Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65566.t1 | XP_013445999.1 | 97.3 | 336 | 9 | 0 | 1 | 336 | 51 | 386 | 1.20E-190 | 675.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65566.t1 | A0A072TRK0 | 97.3 | 336 | 9 | 0 | 1 | 336 | 39 | 374 | 8.4e-191 | 675.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050623 | MS.gene65566 | -0.806044 | 9.96E-50 | -1.69E-46 |
| MS.gene054930 | MS.gene65566 | 0.800624 | 1.32E-48 | -1.69E-46 |
| MS.gene05761 | MS.gene65566 | 0.804802 | 1.81E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65566.t1 | MTR_8g064820 | 97.321 | 336 | 9 | 0 | 1 | 336 | 51 | 386 | 0.0 | 684 |
| MS.gene65566.t1 | MTR_8g064820 | 97.321 | 336 | 9 | 0 | 1 | 336 | 39 | 374 | 0.0 | 684 |
| MS.gene65566.t1 | MTR_8g064820 | 97.321 | 336 | 9 | 0 | 1 | 336 | 2 | 337 | 0.0 | 682 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65566.t1 | AT1G70480 | 59.006 | 322 | 117 | 6 | 1 | 319 | 14 | 323 | 4.87e-127 | 367 |
| MS.gene65566.t1 | AT1G70480 | 60.129 | 311 | 109 | 6 | 12 | 319 | 7 | 305 | 2.14e-126 | 365 |
| MS.gene65566.t1 | AT1G23560 | 50.775 | 258 | 126 | 1 | 32 | 288 | 30 | 287 | 2.88e-94 | 283 |
| MS.gene65566.t1 | AT1G23560 | 50.775 | 258 | 126 | 1 | 32 | 288 | 30 | 287 | 2.88e-94 | 283 |
| MS.gene65566.t1 | AT1G23600 | 38.333 | 240 | 131 | 7 | 62 | 286 | 28 | 265 | 2.71e-52 | 174 |
| MS.gene65566.t1 | AT1G23690 | 39.908 | 218 | 118 | 5 | 70 | 275 | 44 | 260 | 5.97e-52 | 173 |
| MS.gene65566.t1 | AT1G23520 | 40.090 | 222 | 121 | 6 | 77 | 287 | 42 | 262 | 1.74e-51 | 171 |
| MS.gene65566.t1 | AT1G23690 | 38.532 | 218 | 116 | 5 | 70 | 275 | 44 | 255 | 4.94e-49 | 165 |
| MS.gene65566.t1 | AT1G23520 | 39.189 | 222 | 117 | 7 | 77 | 287 | 42 | 256 | 8.50e-48 | 162 |
| MS.gene65566.t1 | AT1G23670 | 40.171 | 234 | 124 | 8 | 68 | 287 | 32 | 263 | 2.94e-46 | 158 |
| MS.gene65566.t1 | AT1G23640 | 38.565 | 223 | 123 | 6 | 76 | 286 | 42 | 262 | 3.00e-46 | 158 |
| MS.gene65566.t1 | AT1G23660 | 37.104 | 221 | 127 | 5 | 77 | 286 | 43 | 262 | 3.41e-45 | 155 |
| MS.gene65566.t1 | AT1G23690 | 40.000 | 175 | 96 | 3 | 110 | 275 | 1 | 175 | 1.98e-42 | 145 |
| MS.gene65566.t1 | AT2G27670 | 35.776 | 232 | 136 | 5 | 59 | 278 | 49 | 279 | 2.13e-41 | 146 |
| MS.gene65566.t1 | AT1G23645 | 45.395 | 152 | 77 | 3 | 139 | 286 | 75 | 224 | 7.06e-39 | 137 |
| MS.gene65566.t1 | AT1G23600 | 42.667 | 150 | 84 | 2 | 139 | 286 | 70 | 219 | 1.14e-37 | 134 |
| MS.gene65566.t1 | AT1G23590 | 39.247 | 186 | 95 | 5 | 77 | 249 | 31 | 211 | 1.80e-37 | 134 |
| MS.gene65566.t1 | AT1G23590 | 38.830 | 188 | 97 | 5 | 75 | 249 | 7 | 189 | 2.91e-37 | 132 |
| MS.gene65566.t1 | AT1G23670 | 43.506 | 154 | 82 | 4 | 139 | 287 | 65 | 218 | 1.46e-33 | 124 |
| MS.gene65566.t1 | AT1G23570 | 42.361 | 144 | 77 | 3 | 139 | 278 | 1 | 142 | 8.78e-33 | 120 |
| MS.gene65566.t1 | AT1G23690 | 33.175 | 211 | 94 | 6 | 70 | 275 | 44 | 212 | 2.01e-32 | 120 |
| MS.gene65566.t1 | AT1G23570 | 42.361 | 144 | 77 | 3 | 139 | 278 | 78 | 219 | 2.97e-32 | 121 |
| MS.gene65566.t1 | AT1G23570 | 42.657 | 143 | 76 | 3 | 140 | 278 | 77 | 217 | 8.38e-32 | 120 |
| MS.gene65566.t1 | AT1G23580 | 41.176 | 153 | 84 | 3 | 139 | 287 | 47 | 197 | 6.81e-31 | 116 |
| MS.gene65566.t1 | AT1G23520 | 37.500 | 120 | 65 | 4 | 77 | 187 | 42 | 160 | 1.21e-18 | 82.4 |
| MS.gene65566.t1 | AT1G23510 | 34.058 | 138 | 79 | 4 | 77 | 202 | 46 | 183 | 1.34e-16 | 77.4 |
| MS.gene65566.t1 | AT1G23510 | 33.577 | 137 | 79 | 4 | 78 | 202 | 1 | 137 | 5.19e-16 | 74.7 |
| MS.gene65566.t1 | AT1G23510 | 33.577 | 137 | 79 | 4 | 78 | 202 | 1 | 137 | 5.19e-16 | 74.7 |
Find 74 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCTTTGTTACGGGTTTAA+AGG | 0.177504 | 8.2:+36921344 | None:intergenic |
| CACTATTTCCATTAATGTTT+TGG | 0.211065 | 8.2:-36921927 | MS.gene65566:CDS |
| TTGATCGACCAAAACATTAA+TGG | 0.218609 | 8.2:+36921919 | None:intergenic |
| TCCTCTCAAATACCATGATA+TGG | 0.256091 | 8.2:+36921230 | None:intergenic |
| TTGAAAACTCTTCTATTATC+AGG | 0.264428 | 8.2:+36922300 | None:intergenic |
| ATCTTCAGCAAGCAGCTATT+TGG | 0.282634 | 8.2:-36921970 | MS.gene65566:CDS |
| CTCATATCCTCCTCTGATTC+TGG | 0.288664 | 8.2:+36921155 | None:intergenic |
| CAGCTATTTGGAGATTTCTT+TGG | 0.298357 | 8.2:-36921958 | MS.gene65566:CDS |
| AGTGATATCCAGAAAAGTTT+TGG | 0.302534 | 8.2:-36922020 | MS.gene65566:CDS |
| CATGGAAAGAAAATCCTTCT+TGG | 0.315393 | 8.2:-36922883 | MS.gene65566:CDS |
| CTTTCCTTGAATCTCTTCCT+TGG | 0.317797 | 8.2:+36921122 | None:intergenic |
| ATTGCAGGATCCAATCGTTT+TGG | 0.317967 | 8.2:+36923149 | None:intergenic |
| CAAAACATGAAGGAATGAAT+TGG | 0.343925 | 8.2:-36922979 | MS.gene65566:CDS |
| TCCTTTGTTACGGGTTTAAA+GGG | 0.344218 | 8.2:+36921345 | None:intergenic |
| GAGGTTGCAAAGAGAACCTT+TGG | 0.345597 | 8.2:+36922380 | None:intergenic |
| TGGAGATTTCTTTGGTGGTC+TGG | 0.348608 | 8.2:-36921950 | MS.gene65566:CDS |
| TTGTAATCTTCCTTTGTTAC+GGG | 0.356737 | 8.2:+36921336 | None:intergenic |
| AAAACATGAAGGAATGAATT+GGG | 0.369792 | 8.2:-36922978 | MS.gene65566:CDS |
| GTTGCTTCGTCGACAAATAA+AGG | 0.370008 | 8.2:+36921375 | None:intergenic |
| ACTATATTATATACTGCATC+AGG | 0.370343 | 8.2:+36922330 | None:intergenic |
| GGGAGATCTGTTCAGAGAAA+TGG | 0.373735 | 8.2:-36922956 | MS.gene65566:CDS |
| ACAAGAGGAAAAGGAAGAAT+TGG | 0.378739 | 8.2:-36921306 | MS.gene65566:CDS |
| CTATTTGGAGATTTCTTTGG+TGG | 0.430423 | 8.2:-36921955 | MS.gene65566:CDS |
| ATGGAAAGAAAATCCTTCTT+GGG | 0.431591 | 8.2:-36922882 | MS.gene65566:CDS |
| TATAAGCATTTCAGTTGTCT+TGG | 0.439312 | 8.2:+36921200 | None:intergenic |
| AGTTAGGTTTCCAAAACGAT+TGG | 0.453278 | 8.2:-36923159 | MS.gene65566:CDS |
| GGAGGTGGAGGGACAATGGC+TGG | 0.454095 | 8.2:+36921252 | None:intergenic |
| ATTGTAATCTTCCTTTGTTA+CGG | 0.464373 | 8.2:+36921335 | None:intergenic |
| GGAGATCTGTTCAGAGAAAT+GGG | 0.464902 | 8.2:-36922955 | MS.gene65566:CDS |
| GAAGATCAACCACTTGCCTA+TGG | 0.466344 | 8.2:+36921987 | None:intergenic |
| AATATGTGTACAAGAGGAAA+AGG | 0.468904 | 8.2:-36921315 | MS.gene65566:CDS |
| AGGAAAGCATGGTGAAAACT+TGG | 0.474837 | 8.2:-36921106 | MS.gene65566:CDS |
| CAAGTTTCAAAATATTGTAA+AGG | 0.475448 | 8.2:-36923099 | MS.gene65566:intron |
| CCTCTCAAATACCATGATAT+GGG | 0.484566 | 8.2:+36921231 | None:intergenic |
| CTCAATGTAGAAGTTGATGT+TGG | 0.487073 | 8.2:-36922360 | MS.gene65566:CDS |
| CCGATCCTCACCTCTACTAC+TGG | 0.493061 | 8.2:+36922848 | None:intergenic |
| TACCATGATATGGGAGGTGG+AGG | 0.496174 | 8.2:+36921240 | None:intergenic |
| TGTTATTCGTGTTAGCTATG+AGG | 0.499997 | 8.2:+36921082 | None:intergenic |
| CAGAATCAGAGGAGGATATG+AGG | 0.500535 | 8.2:-36921154 | MS.gene65566:CDS |
| TCCCTCCACCTCCCATATCA+TGG | 0.510199 | 8.2:-36921242 | MS.gene65566:CDS |
| TCAATGTAGAAGTTGATGTT+GGG | 0.514333 | 8.2:-36922359 | MS.gene65566:CDS |
| AAGTTCAAGCAAACCAAGAC+AGG | 0.515646 | 8.2:-36921435 | MS.gene65566:CDS |
| TGAAGGAGCAAGTGCAAGCA+TGG | 0.518952 | 8.2:-36922901 | MS.gene65566:CDS |
| CGAATAACATTAAAGAGAGA+TGG | 0.528311 | 8.2:-36921068 | MS.gene65566:CDS |
| AAATACCATGATATGGGAGG+TGG | 0.553944 | 8.2:+36921237 | None:intergenic |
| CAACATCAACTTCTACATTG+AGG | 0.558943 | 8.2:+36922361 | None:intergenic |
| AAGTCCAAGGAAGAGATTCA+AGG | 0.560700 | 8.2:-36921126 | MS.gene65566:CDS |
| TGCTTCTGAAGCTGAACTGA+AGG | 0.567738 | 8.2:-36922918 | MS.gene65566:CDS |
| TCCCTTTAAACCCGTAACAA+AGG | 0.570918 | 8.2:-36921346 | MS.gene65566:CDS |
| TATGGGAGGTGGAGGGACAA+TGG | 0.588925 | 8.2:+36921248 | None:intergenic |
| GAAGAGATTCAAGGAAAGCA+TGG | 0.592914 | 8.2:-36921117 | MS.gene65566:CDS |
| GATTACAATATGTGTACAAG+AGG | 0.593335 | 8.2:-36921321 | MS.gene65566:CDS |
| AAAATCATTTAGCAGTCTAA+CGG | 0.594873 | 8.2:+36921006 | None:intergenic |
| AGGTTGCAAAGAGAACCTTT+GGG | 0.595888 | 8.2:+36922381 | None:intergenic |
| CTATATTATATACTGCATCA+GGG | 0.600212 | 8.2:+36922331 | None:intergenic |
| TTTATGATGGGTGAATCAGA+GGG | 0.600858 | 8.2:-36923218 | None:intergenic |
| CCCATATCATGGTATTTGAG+AGG | 0.605593 | 8.2:-36921231 | MS.gene65566:CDS |
| AGTAGATTAGCAAAACATGA+AGG | 0.605643 | 8.2:-36922989 | MS.gene65566:CDS |
| TGGCAGGTGAGTGTTCCCAA+AGG | 0.609640 | 8.2:-36922396 | MS.gene65566:intron |
| GGTGGCTTATCAACCCAAGA+AGG | 0.614982 | 8.2:+36922869 | None:intergenic |
| TATATTATATACTGCATCAG+GGG | 0.615285 | 8.2:+36922332 | None:intergenic |
| TGATAAGCCACCAGTAGTAG+AGG | 0.615534 | 8.2:-36922858 | MS.gene65566:intron |
| GCAGAAACTTCCAGAATCAG+AGG | 0.615549 | 8.2:-36921165 | MS.gene65566:CDS |
| ATCCTCACCTCTACTACTGG+TGG | 0.617260 | 8.2:+36922851 | None:intergenic |
| AAACATGAAGGAATGAATTG+GGG | 0.624768 | 8.2:-36922977 | MS.gene65566:CDS |
| AAAATTTGAGGGCTGCTGGA+GGG | 0.625928 | 8.2:-36921403 | MS.gene65566:CDS |
| CTCAAATACCATGATATGGG+AGG | 0.639863 | 8.2:+36921234 | None:intergenic |
| ATATGAGGCTGAAAAGTCCA+AGG | 0.654650 | 8.2:-36921139 | MS.gene65566:CDS |
| ATATTATATACTGCATCAGG+GGG | 0.664252 | 8.2:+36922333 | None:intergenic |
| ATGATGGGTGAATCAGAGGG+TGG | 0.670961 | 8.2:-36923215 | MS.gene65566:CDS |
| AACATGAAGGAATGAATTGG+GGG | 0.686683 | 8.2:-36922976 | MS.gene65566:CDS |
| TGATGAGGGCCATAGGCAAG+TGG | 0.689944 | 8.2:-36921996 | MS.gene65566:CDS |
| GAAACTTCCAGAATCAGAGG+AGG | 0.702560 | 8.2:-36921162 | MS.gene65566:CDS |
| ACCATGATATGGGAGGTGGA+GGG | 0.711287 | 8.2:+36921241 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATGAAGTTTAAATCAAT+AGG | + | chr8.2:36921674-36921693 | None:intergenic | 15.0% |
| !!! | AATTCTAATTCTTCAATTTT+AGG | + | chr8.2:36922506-36922525 | None:intergenic | 15.0% |
| !!! | TTCAAATTATTTATTTTAGC+AGG | + | chr8.2:36922021-36922040 | None:intergenic | 15.0% |
| !! | ACAAAAAATTTAGATATTGC+AGG | + | chr8.2:36921095-36921114 | None:intergenic | 20.0% |
| !! | ATCCATTCATTATAAGAAAA+AGG | + | chr8.2:36922363-36922382 | None:intergenic | 20.0% |
| !! | ATTATTTCAATTCTTCTTGA+AGG | + | chr8.2:36921765-36921784 | None:intergenic | 20.0% |
| !! | CAAGTTTCAAAATATTGTAA+AGG | - | chr8.2:36921127-36921146 | MS.gene65566:CDS | 20.0% |
| !! | TCAAAATTGTCCAATAAATA+TGG | + | chr8.2:36922387-36922406 | None:intergenic | 20.0% |
| !!! | ATATTTATTGGACAATTTTG+AGG | - | chr8.2:36922386-36922405 | MS.gene65566:CDS | 20.0% |
| !!! | ATCATACACACATTTTTTAA+CGG | - | chr8.2:36922533-36922552 | MS.gene65566:intron | 20.0% |
| !!! | ATCCTTTTTCTTATAATGAA+TGG | - | chr8.2:36922358-36922377 | MS.gene65566:CDS | 20.0% |
| !!! | ATTCTAAATGATGTTTTTCT+TGG | - | chr8.2:36922177-36922196 | MS.gene65566:intron | 20.0% |
| !!! | CATAAATGAAGTATCTAATA+AGG | - | chr8.2:36921688-36921707 | MS.gene65566:intron | 20.0% |
| ! | AAAACATGAAGGAATGAATT+GGG | - | chr8.2:36921248-36921267 | MS.gene65566:CDS | 25.0% |
| ! | ACTATATTATATACTGCATC+AGG | + | chr8.2:36921899-36921918 | None:intergenic | 25.0% |
| ! | AGGATTCATGAAAAAATTTG+AGG | - | chr8.2:36922811-36922830 | MS.gene65566:intron | 25.0% |
| ! | ATTGTAATCTTCCTTTGTTA+CGG | + | chr8.2:36922894-36922913 | None:intergenic | 25.0% |
| ! | CTATATTATATACTGCATCA+GGG | + | chr8.2:36921898-36921917 | None:intergenic | 25.0% |
| ! | GGATTCATGAAAAAATTTGA+GGG | - | chr8.2:36922812-36922831 | MS.gene65566:intron | 25.0% |
| ! | TATATTATATACTGCATCAG+GGG | + | chr8.2:36921897-36921916 | None:intergenic | 25.0% |
| ! | TTACTGAAACAGAAGATTAT+TGG | - | chr8.2:36921439-36921458 | MS.gene65566:CDS | 25.0% |
| ! | TTGAAAACTCTTCTATTATC+AGG | + | chr8.2:36921929-36921948 | None:intergenic | 25.0% |
| !! | CACTATTTCCATTAATGTTT+TGG | - | chr8.2:36922299-36922318 | MS.gene65566:CDS | 25.0% |
| !! | TACTTTTCATCCAACAAAAA+AGG | - | chr8.2:36922732-36922751 | MS.gene65566:intron | 25.0% |
| !! | TGAATGGATTCCATATTTAT+TGG | - | chr8.2:36922374-36922393 | MS.gene65566:CDS | 25.0% |
| !!! | ACAATATTTTGAAACTTGTG+AGG | + | chr8.2:36921125-36921144 | None:intergenic | 25.0% |
| !!! | AGATATACATCCTTTTTTGT+TGG | + | chr8.2:36922745-36922764 | None:intergenic | 25.0% |
| !!! | ATCTTACTGCTACTTAATTT+TGG | - | chr8.2:36922761-36922780 | MS.gene65566:intron | 25.0% |
| !!! | ATTCTTCAATTTTAGGTAGT+TGG | + | chr8.2:36922499-36922518 | None:intergenic | 25.0% |
| !!! | TGAATAGGATTGATTTTCTT+TGG | - | chr8.2:36921402-36921421 | MS.gene65566:CDS | 25.0% |
| !!! | TTAAAGAGAGATGGATTTTA+AGG | - | chr8.2:36923167-36923186 | MS.gene65566:CDS | 25.0% |
| AAACATGAAGGAATGAATTG+GGG | - | chr8.2:36921249-36921268 | MS.gene65566:CDS | 30.0% | |
| AAGGCATATGAAAGTTAAGT+AGG | + | chr8.2:36921746-36921765 | None:intergenic | 30.0% | |
| AATATGTGTACAAGAGGAAA+AGG | - | chr8.2:36922911-36922930 | MS.gene65566:CDS | 30.0% | |
| ACAGAAATGATTACTCTGTA+AGG | - | chr8.2:36922331-36922350 | MS.gene65566:CDS | 30.0% | |
| AGTAGATTAGCAAAACATGA+AGG | - | chr8.2:36921237-36921256 | MS.gene65566:CDS | 30.0% | |
| ATATTATATACTGCATCAGG+GGG | + | chr8.2:36921896-36921915 | None:intergenic | 30.0% | |
| ATGGAAAGAAAATCCTTCTT+GGG | - | chr8.2:36921344-36921363 | MS.gene65566:CDS | 30.0% | |
| CAAAACATGAAGGAATGAAT+TGG | - | chr8.2:36921247-36921266 | MS.gene65566:CDS | 30.0% | |
| CCAGAAAGAATGAAAAAGTT+AGG | - | chr8.2:36921051-36921070 | MS.gene65566:CDS | 30.0% | |
| CGAATAACATTAAAGAGAGA+TGG | - | chr8.2:36923158-36923177 | MS.gene65566:CDS | 30.0% | |
| GATTACAATATGTGTACAAG+AGG | - | chr8.2:36922905-36922924 | MS.gene65566:CDS | 30.0% | |
| TATAAGCATTTCAGTTGTCT+TGG | + | chr8.2:36923029-36923048 | None:intergenic | 30.0% | |
| TCGTAGTAACAAACAATCAA+CGG | + | chr8.2:36922667-36922686 | None:intergenic | 30.0% | |
| TTGATCGACCAAAACATTAA+TGG | + | chr8.2:36922310-36922329 | None:intergenic | 30.0% | |
| TTGTAATCTTCCTTTGTTAC+GGG | + | chr8.2:36922893-36922912 | None:intergenic | 30.0% | |
| ! | AAATGATGTTTTTCTTGGTC+AGG | - | chr8.2:36922182-36922201 | MS.gene65566:intron | 30.0% |
| ! | AGTGATATCCAGAAAAGTTT+TGG | - | chr8.2:36922206-36922225 | MS.gene65566:intron | 30.0% |
| ! | GTCTCAGTAAATGTTTCTTT+TGG | - | chr8.2:36921810-36921829 | MS.gene65566:intron | 30.0% |
| !! | ATTTGTTTCTATGACACCAA+GGG | + | chr8.2:36922641-36922660 | None:intergenic | 30.0% |
| !! | GTACTCATAAGTTTTAGTGT+CGG | - | chr8.2:36921602-36921621 | MS.gene65566:intron | 30.0% |
| !! | TCAATGTAGAAGTTGATGTT+GGG | - | chr8.2:36921867-36921886 | MS.gene65566:intron | 30.0% |
| !! | TTGGTGTCATAGAAACAAAT+GGG | - | chr8.2:36922641-36922660 | MS.gene65566:intron | 30.0% |
| !!! | AGAAAAGTTTTGGTTGATGA+GGG | - | chr8.2:36922216-36922235 | MS.gene65566:intron | 30.0% |
| !!! | CCTAACTTTTTCATTCTTTC+TGG | + | chr8.2:36921054-36921073 | None:intergenic | 30.0% |
| !!! | TTTTTTCATGAATCCTGTCT+TGG | + | chr8.2:36922807-36922826 | None:intergenic | 30.0% |
| AACATGAAGGAATGAATTGG+GGG | - | chr8.2:36921250-36921269 | MS.gene65566:CDS | 35.0% | |
| ACAAGAGGAAAAGGAAGAAT+TGG | - | chr8.2:36922920-36922939 | MS.gene65566:CDS | 35.0% | |
| AGTTAGGTTTCCAAAACGAT+TGG | - | chr8.2:36921067-36921086 | MS.gene65566:CDS | 35.0% | |
| ATAAGTCTGCTCAATGTGTT+TGG | - | chr8.2:36921979-36921998 | MS.gene65566:CDS | 35.0% | |
| CAACATCAACTTCTACATTG+AGG | + | chr8.2:36921868-36921887 | None:intergenic | 35.0% | |
| CAGCTATTTGGAGATTTCTT+TGG | - | chr8.2:36922268-36922287 | MS.gene65566:intron | 35.0% | |
| CATGGAAAGAAAATCCTTCT+TGG | - | chr8.2:36921343-36921362 | MS.gene65566:CDS | 35.0% | |
| CCTCTCAAATACCATGATAT+GGG | + | chr8.2:36922998-36923017 | None:intergenic | 35.0% | |
| CTATTTGGAGATTTCTTTGG+TGG | - | chr8.2:36922271-36922290 | MS.gene65566:intron | 35.0% | |
| TAAACCATTAGCCATAGCAT+AGG | + | chr8.2:36921165-36921184 | None:intergenic | 35.0% | |
| TAGTCATCAATCCTATGCTA+TGG | - | chr8.2:36921151-36921170 | MS.gene65566:CDS | 35.0% | |
| TCCTCTCAAATACCATGATA+TGG | + | chr8.2:36922999-36923018 | None:intergenic | 35.0% | |
| TCCTTTGTTACGGGTTTAAA+GGG | + | chr8.2:36922884-36922903 | None:intergenic | 35.0% | |
| TGTTATTCGTGTTAGCTATG+AGG | + | chr8.2:36923147-36923166 | None:intergenic | 35.0% | |
| TTCCTTTGTTACGGGTTTAA+AGG | + | chr8.2:36922885-36922904 | None:intergenic | 35.0% | |
| ! | CAGTAAATGTTTCTTTTGGC+AGG | - | chr8.2:36921814-36921833 | MS.gene65566:intron | 35.0% |
| ! | CTCATCAACCAAAACTTTTC+TGG | + | chr8.2:36922217-36922236 | None:intergenic | 35.0% |
| !! | CATTTGTTTCTATGACACCA+AGG | + | chr8.2:36922642-36922661 | None:intergenic | 35.0% |
| !! | CTCAATGTAGAAGTTGATGT+TGG | - | chr8.2:36921866-36921885 | MS.gene65566:intron | 35.0% |
| !! | CTTGGTGTCATAGAAACAAA+TGG | - | chr8.2:36922640-36922659 | MS.gene65566:intron | 35.0% |
| !!! | CAGAAAAGTTTTGGTTGATG+AGG | - | chr8.2:36922215-36922234 | MS.gene65566:intron | 35.0% |
| AAATACCATGATATGGGAGG+TGG | + | chr8.2:36922992-36923011 | None:intergenic | 40.0% | |
| AAGTCCAAGGAAGAGATTCA+AGG | - | chr8.2:36923100-36923119 | MS.gene65566:CDS | 40.0% | |
| AAGTTCAAGCAAACCAAGAC+AGG | - | chr8.2:36922791-36922810 | MS.gene65566:intron | 40.0% | |
| AGGTTGCAAAGAGAACCTTT+GGG | + | chr8.2:36921848-36921867 | None:intergenic | 40.0% | |
| ATATGAGGCTGAAAAGTCCA+AGG | - | chr8.2:36923087-36923106 | MS.gene65566:intron | 40.0% | |
| ATCTTCAGCAAGCAGCTATT+TGG | - | chr8.2:36922256-36922275 | MS.gene65566:intron | 40.0% | |
| CAATCCTATGCTATGGCTAA+TGG | - | chr8.2:36921158-36921177 | MS.gene65566:CDS | 40.0% | |
| CACCTCTCTTATAAGACTCT+TGG | - | chr8.2:36922424-36922443 | MS.gene65566:intron | 40.0% | |
| CCCATATCATGGTATTTGAG+AGG | - | chr8.2:36922995-36923014 | MS.gene65566:CDS | 40.0% | |
| CTCAAATACCATGATATGGG+AGG | + | chr8.2:36922995-36923014 | None:intergenic | 40.0% | |
| CTTTCCTTGAATCTCTTCCT+TGG | + | chr8.2:36923107-36923126 | None:intergenic | 40.0% | |
| GAAGAGATTCAAGGAAAGCA+TGG | - | chr8.2:36923109-36923128 | MS.gene65566:CDS | 40.0% | |
| GGAGATCTGTTCAGAGAAAT+GGG | - | chr8.2:36921271-36921290 | MS.gene65566:CDS | 40.0% | |
| GTTGCTTCGTCGACAAATAA+AGG | + | chr8.2:36922854-36922873 | None:intergenic | 40.0% | |
| TCCCTTTAAACCCGTAACAA+AGG | - | chr8.2:36922880-36922899 | MS.gene65566:CDS | 40.0% | |
| TCTTTAACCTGTTCCTGTCT+AGG | - | chr8.2:36921497-36921516 | MS.gene65566:intron | 40.0% | |
| TGAAAAAATTTGAGGGCTGC+TGG | - | chr8.2:36922819-36922838 | MS.gene65566:intron | 40.0% | |
| ! | ACACTGACAATCTGAAGTGT+CGG | - | chr8.2:36921635-36921654 | MS.gene65566:intron | 40.0% |
| ! | AGGAAAGCATGGTGAAAACT+TGG | - | chr8.2:36923120-36923139 | MS.gene65566:CDS | 40.0% |
| ! | ATTGCAGGATCCAATCGTTT+TGG | + | chr8.2:36921080-36921099 | None:intergenic | 40.0% |
| ! | GTCCAAGAGTCTTATAAGAG+AGG | + | chr8.2:36922429-36922448 | None:intergenic | 40.0% |
| !! | AGTTTTAGTGTCGGACACTT+AGG | - | chr8.2:36921611-36921630 | MS.gene65566:intron | 40.0% |
| AAAAATTTGAGGGCTGCTGG+AGG | - | chr8.2:36922822-36922841 | MS.gene65566:intron | 45.0% | |
| AAAATTTGAGGGCTGCTGGA+GGG | - | chr8.2:36922823-36922842 | MS.gene65566:intron | 45.0% | |
| CAGAATCAGAGGAGGATATG+AGG | - | chr8.2:36923072-36923091 | MS.gene65566:intron | 45.0% | |
| CTCATATCCTCCTCTGATTC+TGG | + | chr8.2:36923074-36923093 | None:intergenic | 45.0% | |
| GAAACTTCCAGAATCAGAGG+AGG | - | chr8.2:36923064-36923083 | MS.gene65566:intron | 45.0% | |
| GAAGATCAACCACTTGCCTA+TGG | + | chr8.2:36922242-36922261 | None:intergenic | 45.0% | |
| GAGGTTGCAAAGAGAACCTT+TGG | + | chr8.2:36921849-36921868 | None:intergenic | 45.0% | |
| GCAGAAACTTCCAGAATCAG+AGG | - | chr8.2:36923061-36923080 | MS.gene65566:intron | 45.0% | |
| GGGAGATCTGTTCAGAGAAA+TGG | - | chr8.2:36921270-36921289 | MS.gene65566:CDS | 45.0% | |
| TGATAAGCCACCAGTAGTAG+AGG | - | chr8.2:36921368-36921387 | MS.gene65566:CDS | 45.0% | |
| ! | TGGAGATTTCTTTGGTGGTC+TGG | - | chr8.2:36922276-36922295 | MS.gene65566:intron | 45.0% |
| !! | AGGAAGCACTGCTACATACA+AGG | - | chr8.2:36921517-36921536 | MS.gene65566:intron | 45.0% |
| !! | TGCTTCTGAAGCTGAACTGA+AGG | - | chr8.2:36921308-36921327 | MS.gene65566:CDS | 45.0% |
| !!! | TTTTGGTTGATGAGGGCCAT+AGG | - | chr8.2:36922223-36922242 | MS.gene65566:intron | 45.0% |
| ACCATGATATGGGAGGTGGA+GGG | + | chr8.2:36922988-36923007 | None:intergenic | 50.0% | |
| AGTGCTTCCTAGACAGGAAC+AGG | + | chr8.2:36921507-36921526 | None:intergenic | 50.0% | |
| ATCCTCACCTCTACTACTGG+TGG | + | chr8.2:36921378-36921397 | None:intergenic | 50.0% | |
| CCAAGGGACGATGTTGTGAT+TGG | + | chr8.2:36922625-36922644 | None:intergenic | 50.0% | |
| CCAATCACAACATCGTCCCT+TGG | - | chr8.2:36922622-36922641 | MS.gene65566:intron | 50.0% | |
| CCAGTAGTAGAGGTGAGGAT+CGG | - | chr8.2:36921378-36921397 | MS.gene65566:CDS | 50.0% | |
| CTAAAACGACACAGACACGC+AGG | - | chr8.2:36921542-36921561 | MS.gene65566:intron | 50.0% | |
| GAGGTGAGGATCGGTTGAAT+AGG | - | chr8.2:36921387-36921406 | MS.gene65566:CDS | 50.0% | |
| GGTGGCTTATCAACCCAAGA+AGG | + | chr8.2:36921360-36921379 | None:intergenic | 50.0% | |
| TACCATGATATGGGAGGTGG+AGG | + | chr8.2:36922989-36923008 | None:intergenic | 50.0% | |
| TGAAGGAGCAAGTGCAAGCA+TGG | - | chr8.2:36921325-36921344 | MS.gene65566:CDS | 50.0% | |
| TGTAGCAGTGCTTCCTAGAC+AGG | + | chr8.2:36921513-36921532 | None:intergenic | 50.0% | |
| !!! | CTGCGTGTCTGTGTCGTTTT+AGG | + | chr8.2:36921544-36921563 | None:intergenic | 50.0% |
| AGCCACCAGTAGTAGAGGTG+AGG | - | chr8.2:36921373-36921392 | MS.gene65566:CDS | 55.0% | |
| CCGATCCTCACCTCTACTAC+TGG | + | chr8.2:36921381-36921400 | None:intergenic | 55.0% | |
| TATGGGAGGTGGAGGGACAA+TGG | + | chr8.2:36922981-36923000 | None:intergenic | 55.0% | |
| TCCCTCCACCTCCCATATCA+TGG | - | chr8.2:36922984-36923003 | MS.gene65566:CDS | 55.0% | |
| TGATGAGGGCCATAGGCAAG+TGG | - | chr8.2:36922230-36922249 | MS.gene65566:intron | 55.0% | |
| TGGCAGGTGAGTGTTCCCAA+AGG | - | chr8.2:36921830-36921849 | MS.gene65566:intron | 55.0% | |
| !! | CTGAAGTGTCGGCGCTACAT+AGG | - | chr8.2:36921646-36921665 | MS.gene65566:intron | 55.0% |
| ACGACACAGACACGCAGGCA+TGG | - | chr8.2:36921547-36921566 | MS.gene65566:intron | 60.0% | |
| CGACACAGACACGCAGGCAT+GGG | - | chr8.2:36921548-36921567 | MS.gene65566:intron | 60.0% | |
| GGAGGTGGAGGGACAATGGC+TGG | + | chr8.2:36922977-36922996 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 36921014 | 36923234 | 36921014 | ID=MS.gene65566 |
| chr8.2 | mRNA | 36921014 | 36923234 | 36921014 | ID=MS.gene65566.t1;Parent=MS.gene65566 |
| chr8.2 | exon | 36923100 | 36923234 | 36923100 | ID=MS.gene65566.t1.exon1;Parent=MS.gene65566.t1 |
| chr8.2 | CDS | 36923100 | 36923234 | 36923100 | ID=cds.MS.gene65566.t1;Parent=MS.gene65566.t1 |
| chr8.2 | exon | 36922859 | 36923020 | 36922859 | ID=MS.gene65566.t1.exon2;Parent=MS.gene65566.t1 |
| chr8.2 | CDS | 36922859 | 36923020 | 36922859 | ID=cds.MS.gene65566.t1;Parent=MS.gene65566.t1 |
| chr8.2 | exon | 36922290 | 36922412 | 36922290 | ID=MS.gene65566.t1.exon3;Parent=MS.gene65566.t1 |
| chr8.2 | CDS | 36922290 | 36922412 | 36922290 | ID=cds.MS.gene65566.t1;Parent=MS.gene65566.t1 |
| chr8.2 | exon | 36921901 | 36922044 | 36921901 | ID=MS.gene65566.t1.exon4;Parent=MS.gene65566.t1 |
| chr8.2 | CDS | 36921901 | 36922044 | 36921901 | ID=cds.MS.gene65566.t1;Parent=MS.gene65566.t1 |
| chr8.2 | exon | 36921014 | 36921460 | 36921014 | ID=MS.gene65566.t1.exon5;Parent=MS.gene65566.t1 |
| chr8.2 | CDS | 36921014 | 36921460 | 36921014 | ID=cds.MS.gene65566.t1;Parent=MS.gene65566.t1 |
| Gene Sequence |
| Protein sequence |
