AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene05761


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05761.t1 MTR_3g465390 96.463 311 11 0 134 444 195 505 0.0 616
MS.gene05761.t1 MTR_3g465390 94.891 137 6 1 1 136 1 137 2.10e-84 268
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05761.t1 AT2G30100 44.078 515 205 11 1 444 1 503 7.05e-128 380

Find 96 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGATTCTATCCTGAGTATT+TGG 0.183465 3.1:+49184228 MS.gene05761:CDS
GTTTACTTCAACGTTGAAAT+TGG 0.187412 3.1:+49181494 MS.gene05761:CDS
AACTGTAAATCTCGGGTTTC+AGG 0.195223 3.1:-49183697 None:intergenic
TATTTCTTTGTATTGGGATA+TGG 0.198899 3.1:+49182073 MS.gene05761:CDS
TTGCTGTTATGCAAGGTTTA+AGG 0.224922 3.1:+49184257 MS.gene05761:CDS
CATTTCCCACAATTGTTTCT+CGG 0.274470 3.1:-49183987 None:intergenic
CTGTAAGCTCAACGTCTTCT+AGG 0.277781 3.1:-49183823 None:intergenic
TTATTAAGAGGTTATATTAA+AGG 0.285799 3.1:+49184157 MS.gene05761:CDS
ACCAAAGGGTATCTTTGTTT+TGG 0.288496 3.1:-49181543 None:intergenic
AGAAGGTTATTTCTTTGTAT+TGG 0.292872 3.1:+49182066 MS.gene05761:CDS
GAAGGTTATTTCTTTGTATT+GGG 0.310032 3.1:+49182067 MS.gene05761:CDS
GGGCATAAGGGTGGACCAAC+GGG 0.334279 3.1:+49182173 MS.gene05761:CDS
TTGTCTGAAGCAAATCTTAT+AGG 0.337040 3.1:+49184334 MS.gene05761:CDS
CGAAGAGGAGGAAGAAGAAA+TGG 0.342195 3.1:+49181707 MS.gene05761:CDS
ATTTCTTTGTATTGGGATAT+GGG 0.350999 3.1:+49182074 MS.gene05761:CDS
TGTAATGAAAATGCTTGAAT+TGG 0.354301 3.1:+49184207 MS.gene05761:CDS
CAAAACCAATTTCAATTAAG+AGG 0.363383 3.1:+49181643 MS.gene05761:CDS
GGTCCACCCTTATGCCCTTC+AGG 0.384519 3.1:-49182167 None:intergenic
AGGAAAAGGATACAGCAATA+TGG 0.396231 3.1:+49184277 MS.gene05761:CDS
CTCGGCCTCGATTCCACGGC+CGG 0.396433 3.1:-49183969 None:intergenic
ATGTTAGAAAATATAAGCTT+TGG 0.401933 3.1:+49184377 MS.gene05761:CDS
TGCAATGACTGCTGTGGTTA+AGG 0.403361 3.1:+49183727 MS.gene05761:CDS
GCGCTGTTAGATTGGTAATT+CGG 0.407641 3.1:+49183660 MS.gene05761:CDS
TTTACTTCAACGTTGAAATT+GGG 0.409802 3.1:+49181495 MS.gene05761:CDS
TTTCATCTTTCGTAGAGCTT+TGG 0.411105 3.1:-49183765 None:intergenic
GCCATCTTGAATCACCCATT+TGG 0.414916 3.1:-49183888 None:intergenic
TGTTAGAAAATATAAGCTTT+GGG 0.415941 3.1:+49184378 MS.gene05761:CDS
CTACCGAGGCGCTGTTAGAT+TGG 0.421073 3.1:+49183652 MS.gene05761:CDS
ACCAAAACAAAGATACCCTT+TGG 0.424739 3.1:+49181542 MS.gene05761:CDS
CGTCGTCGCTCGTCACGAAT+TGG 0.428088 3.1:-49181686 None:intergenic
ATGTACATTTGCGCCGGCCG+TGG 0.434773 3.1:+49183956 MS.gene05761:CDS
TTATGCAAGGTTTAAGGAAA+AGG 0.439391 3.1:+49184263 MS.gene05761:CDS
AGTATGTCATGGTTATTAAG+AGG 0.439547 3.1:+49184145 MS.gene05761:CDS
GGATGATCCTGAAGGGCATA+AGG 0.442350 3.1:+49182160 MS.gene05761:CDS
AGAGATGAATGACCGTCTTT+CGG 0.442501 3.1:+49181797 MS.gene05761:CDS
AACAAGATAACTGTAAATCT+CGG 0.447261 3.1:-49183705 None:intergenic
ATGGAGCGCGATTATCCAAA+TGG 0.455259 3.1:+49183873 MS.gene05761:CDS
GTAATTCGGTTTAGAGAAGC+TGG 0.457189 3.1:+49183674 MS.gene05761:CDS
TTGGTTTATTTCTCTCAAGA+TGG 0.474725 3.1:+49181840 MS.gene05761:CDS
GACCAACGGGGTATCTTGCT+TGG 0.476332 3.1:+49182186 MS.gene05761:CDS
CTCAAGATGGAAGAGATTCA+TGG 0.488781 3.1:+49181853 MS.gene05761:CDS
GTAATGAAAATGCTTGAATT+GGG 0.493351 3.1:+49184208 MS.gene05761:CDS
TGCTTGTTTGTTTGTGCAAG+AGG 0.497745 3.1:+49182109 MS.gene05761:CDS
GAAGAGGAGGAAGAAGAAAT+GGG 0.500918 3.1:+49181708 MS.gene05761:CDS
GATGATCCTGAAGGGCATAA+GGG 0.516218 3.1:+49182161 MS.gene05761:CDS
ATAATTCCGTGAAGTGATGA+AGG 0.517473 3.1:-49183914 None:intergenic
ACAAGATAACTGTAAATCTC+GGG 0.519241 3.1:-49183704 None:intergenic
GAGGAAGAAGAAATGGGAGA+TGG 0.520570 3.1:+49181714 MS.gene05761:CDS
GTTTCTCGGCCTCGATTCCA+CGG 0.529276 3.1:-49183973 None:intergenic
GGCAGCCCTTCATCACTTCA+CGG 0.530719 3.1:+49183908 MS.gene05761:CDS
GATAGAGTTGCTGTTATGCA+AGG 0.534593 3.1:+49184250 MS.gene05761:CDS
TAAAGAACTTCAGCTTGTGT+TGG 0.535620 3.1:+49181821 MS.gene05761:CDS
AATGAAGCTTGTTGGTAAAG+AGG 0.535653 3.1:+49184006 MS.gene05761:CDS
TTGTGGGAAATGAAGCTTGT+TGG 0.536960 3.1:+49183998 MS.gene05761:CDS
AGGGCATAAGGGTGGACCAA+CGG 0.542598 3.1:+49182172 MS.gene05761:CDS
AAGCAATTGAAGAGCTTGAG+AGG 0.545075 3.1:+49181745 MS.gene05761:CDS
TGGGATATGGGAGAGAAAGA+TGG 0.545406 3.1:+49182086 MS.gene05761:CDS
CATCCGCTAGAAGATCTGAT+TGG 0.546140 3.1:-49183853 None:intergenic
TTAAGAGGTTATATTAAAGG+TGG 0.550177 3.1:+49184160 MS.gene05761:CDS
CAATCAGATCTTCTAGCGGA+TGG 0.553337 3.1:+49183854 MS.gene05761:CDS
TTGCGCCGGCCGTGGAATCG+AGG 0.555480 3.1:+49183964 MS.gene05761:CDS
GTATCTTGCTTGGAAGATGA+TGG 0.557008 3.1:+49182196 MS.gene05761:CDS
CGGCGCAAATGTACATAGCA+AGG 0.559294 3.1:-49183949 None:intergenic
CTTGCTATGTACATTTGCGC+CGG 0.562871 3.1:+49183950 MS.gene05761:CDS
CGAGGCCGAGAAACAATTGT+GGG 0.568461 3.1:+49183982 MS.gene05761:CDS
GTTTATCCTTCATCAAAGTG+TGG 0.569271 3.1:+49181564 MS.gene05761:CDS
TGGAGCGCGATTATCCAAAT+GGG 0.575865 3.1:+49183874 MS.gene05761:CDS
AGCGAGGCTAATGACACGGT+TGG 0.576710 3.1:+49184093 MS.gene05761:CDS
TCCAAATGGGTGATTCAAGA+TGG 0.579510 3.1:+49183887 MS.gene05761:CDS
ATCTCTTCTAGAACATCAGA+TGG 0.583028 3.1:-49181780 None:intergenic
TTGATGAAGGATAAACCAAA+GGG 0.588202 3.1:-49181557 None:intergenic
GAAGTTCTTTAGCCGAAAGA+CGG 0.590724 3.1:-49181809 None:intergenic
TCTTGTTGCAATGACTGCTG+TGG 0.592096 3.1:+49183721 MS.gene05761:CDS
AGAAGAAGAAAAGTATGTCA+TGG 0.592175 3.1:+49184134 MS.gene05761:CDS
TTTGATGAAGGATAAACCAA+AGG 0.610174 3.1:-49181558 None:intergenic
GCAACTCTATCCAAATACTC+AGG 0.612259 3.1:-49184238 None:intergenic
AAGAGCTTGAGAGGATGACA+AGG 0.621727 3.1:+49181754 MS.gene05761:CDS
CTTGTTGGTAAAGAGGCTGA+TGG 0.624758 3.1:+49184013 MS.gene05761:CDS
GACGAGCGACGACGAAGAGG+AGG 0.626653 3.1:+49181695 MS.gene05761:CDS
CGTGACGAGCGACGACGAAG+AGG 0.634487 3.1:+49181692 MS.gene05761:CDS
TCGAGGCCGAGAAACAATTG+TGG 0.634506 3.1:+49183981 MS.gene05761:CDS
GATCCTGAAGGGCATAAGGG+TGG 0.636589 3.1:+49182164 MS.gene05761:CDS
TTCACGGAATTATTCACGAG+AGG 0.643647 3.1:+49183924 MS.gene05761:CDS
TTCCAAGCAAGATACCCCGT+TGG 0.647584 3.1:-49182188 None:intergenic
GTAGTGAGGATGATCCTGAA+GGG 0.649026 3.1:+49182153 MS.gene05761:CDS
TTACCAATCTAACAGCGCCT+CGG 0.652255 3.1:-49183655 None:intergenic
GTTGGTAAAGAGGCTGATGG+AGG 0.655648 3.1:+49184016 MS.gene05761:CDS
CAACAGCGAGGCTAATGACA+CGG 0.659537 3.1:+49184089 MS.gene05761:CDS
ACATACAAATACACAAGACA+AGG 0.663979 3.1:-49184358 None:intergenic
TGTAGTGAGGATGATCCTGA+AGG 0.681946 3.1:+49182152 MS.gene05761:CDS
ACGTGGGATTGCTTGTAGTG+AGG 0.689857 3.1:+49182139 MS.gene05761:CDS
TAATTCCGTGAAGTGATGAA+GGG 0.690228 3.1:-49183913 None:intergenic
GTACCAATCAGATCTTCTAG+CGG 0.698444 3.1:+49183850 MS.gene05761:CDS
AAGAGGCTGCGTCAACAGCG+AGG 0.712375 3.1:+49184077 MS.gene05761:CDS
GGCATAAGGGTGGACCAACG+GGG 0.714147 3.1:+49182174 MS.gene05761:CDS
AGAGCTTGAGAGGATGACAA+GGG 0.733122 3.1:+49181755 MS.gene05761:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATCTAGTAATATTAATTT+AGG - chr3.1:49183556-49183575 None:intergenic 10.0%
!! AGTAAAAATATATAGATATT+TGG - chr3.1:49182880-49182899 None:intergenic 10.0%
!!! AAAGTTGATTATAATATAAT+TGG + chr3.1:49182372-49182391 MS.gene05761:intron 10.0%
!!! TGATTTTATAAAATTGAATT+TGG + chr3.1:49182700-49182719 MS.gene05761:intron 10.0%
!! TTATTAAGAGGTTATATTAA+AGG + chr3.1:49184157-49184176 MS.gene05761:CDS 15.0%
!!! ACATAATTTAAAATCAAAGT+AGG - chr3.1:49182954-49182973 None:intergenic 15.0%
!! AAATTGAATTTGGTTATGTT+TGG + chr3.1:49182710-49182729 MS.gene05761:intron 20.0%
!! ATGTTAGAAAATATAAGCTT+TGG + chr3.1:49184377-49184396 MS.gene05761:CDS 20.0%
!! TGTTAGAAAATATAAGCTTT+GGG + chr3.1:49184378-49184397 MS.gene05761:CDS 20.0%
!!! AGTTGTATTTAACCAATTTT+TGG + chr3.1:49183334-49183353 MS.gene05761:intron 20.0%
!!! TGTAGTTTGTAAATGAAAAT+TGG - chr3.1:49182851-49182870 None:intergenic 20.0%
!!! TTTAACCAATTTTTGGAATA+AGG + chr3.1:49183341-49183360 MS.gene05761:intron 20.0%
!!! TTTATTATTTAGTTCGAGAA+TGG + chr3.1:49182247-49182266 MS.gene05761:intron 20.0%
!!! TTTTACTCAAATTCAATGAT+GGG + chr3.1:49181589-49181608 MS.gene05761:CDS 20.0%
!!! TTTTTACTCAAATTCAATGA+TGG + chr3.1:49181588-49181607 MS.gene05761:CDS 20.0%
!!! TTTTTCCTCTTAATTGAAAT+TGG - chr3.1:49181651-49181670 None:intergenic 20.0%
! AACAAGATAACTGTAAATCT+CGG - chr3.1:49183708-49183727 None:intergenic 25.0%
! AATTAAGAGGAAAAATTCAG+TGG + chr3.1:49181656-49181675 MS.gene05761:CDS 25.0%
! AGATAAGCTTATGATATTTG+TGG + chr3.1:49183189-49183208 MS.gene05761:intron 25.0%
! ATTTCTTTGTATTGGGATAT+GGG + chr3.1:49182074-49182093 MS.gene05761:CDS 25.0%
! CAAAACCAATTTCAATTAAG+AGG + chr3.1:49181643-49181662 MS.gene05761:CDS 25.0%
! CAAATATCATAAGCTTATCT+AGG - chr3.1:49183189-49183208 None:intergenic 25.0%
! CATATCCTTATTCCAAAAAT+TGG - chr3.1:49183349-49183368 None:intergenic 25.0%
! GTAATGAAAATGCTTGAATT+GGG + chr3.1:49184208-49184227 MS.gene05761:CDS 25.0%
! TATTTCTTTGTATTGGGATA+TGG + chr3.1:49182073-49182092 MS.gene05761:CDS 25.0%
! TGTAATGAAAATGCTTGAAT+TGG + chr3.1:49184207-49184226 MS.gene05761:CDS 25.0%
! TTAAGAGGTTATATTAAAGG+TGG + chr3.1:49184160-49184179 MS.gene05761:CDS 25.0%
! TTTACTTCAACGTTGAAATT+GGG + chr3.1:49181495-49181514 MS.gene05761:CDS 25.0%
!! AAGTTGATTATGGAAAAACA+TGG + chr3.1:49181972-49181991 MS.gene05761:intron 25.0%
!! ATCATCAGTTATTTGTTAGA+AGG + chr3.1:49183593-49183612 MS.gene05761:intron 25.0%
!! TTTTTGATCATTGTCATAAG+TGG + chr3.1:49182622-49182641 MS.gene05761:intron 25.0%
!!! AGAAGGTTATTTCTTTGTAT+TGG + chr3.1:49182066-49182085 MS.gene05761:CDS 25.0%
!!! ATTGGTTTTGCTACAAATAA+AGG - chr3.1:49181633-49181652 None:intergenic 25.0%
!!! GAAGGTTATTTCTTTGTATT+GGG + chr3.1:49182067-49182086 MS.gene05761:CDS 25.0%
!!! TAACATTTTGATTGTGTTGA+TGG + chr3.1:49182300-49182319 MS.gene05761:intron 25.0%
!!! TTATGCCATTTTGTTTTCAT+GGG + chr3.1:49183284-49183303 MS.gene05761:intron 25.0%
!!! TTGGTTTTGCTACAAATAAA+GGG - chr3.1:49181632-49181651 None:intergenic 25.0%
!!! TTTATGCCATTTTGTTTTCA+TGG + chr3.1:49183283-49183302 MS.gene05761:intron 25.0%
!!! TTTTGGAATAAGGATATGTT+TGG + chr3.1:49183351-49183370 MS.gene05761:intron 25.0%
AAAAATCCACACTTTGATGA+AGG - chr3.1:49181573-49181592 None:intergenic 30.0%
AAAAGCTCCAATTCTATGTT+TGG - chr3.1:49182606-49182625 None:intergenic 30.0%
AAAATGGCATAAAGTGCATA+TGG - chr3.1:49183276-49183295 None:intergenic 30.0%
AAACTAGAGCTTCTATGAAT+TGG + chr3.1:49183145-49183164 MS.gene05761:intron 30.0%
AAATGGCATAAAGTGCATAT+GGG - chr3.1:49183275-49183294 None:intergenic 30.0%
ACAAGATAACTGTAAATCTC+GGG - chr3.1:49183707-49183726 None:intergenic 30.0%
ACATACAAATACACAAGACA+AGG - chr3.1:49184361-49184380 None:intergenic 30.0%
AGTATGTCATGGTTATTAAG+AGG + chr3.1:49184145-49184164 MS.gene05761:CDS 30.0%
ATTATGGAAAAACATGGTGT+TGG + chr3.1:49181978-49181997 MS.gene05761:intron 30.0%
ATTGGTTAAGGAAAGAGAAT+AGG + chr3.1:49181895-49181914 MS.gene05761:intron 30.0%
CACCATTTCTAAACTCAAAA+AGG - chr3.1:49183016-49183035 None:intergenic 30.0%
CTAACAAATAACTGATGATC+AGG - chr3.1:49183592-49183611 None:intergenic 30.0%
GTTTACTTCAACGTTGAAAT+TGG + chr3.1:49181494-49181513 MS.gene05761:CDS 30.0%
TAAGGAAACTATGGAGTTAA+TGG + chr3.1:49181923-49181942 MS.gene05761:intron 30.0%
TAGTTTGAAAAGTTGCTTCT+AGG - chr3.1:49183131-49183150 None:intergenic 30.0%
TGTTGATCTTCTTGTTGATA+TGG + chr3.1:49182007-49182026 MS.gene05761:intron 30.0%
TTATGCAAGGTTTAAGGAAA+AGG + chr3.1:49184263-49184282 MS.gene05761:CDS 30.0%
TTCTCAATCATACTAAAACC+AGG - chr3.1:49182050-49182069 None:intergenic 30.0%
TTGAGTTTAGAAATGGTGTT+TGG + chr3.1:49183018-49183037 MS.gene05761:intron 30.0%
TTGATGAAGGATAAACCAAA+GGG - chr3.1:49181560-49181579 None:intergenic 30.0%
TTGGTTAAGGAAAGAGAATA+GGG + chr3.1:49181896-49181915 MS.gene05761:intron 30.0%
TTTGATGAAGGATAAACCAA+AGG - chr3.1:49181561-49181580 None:intergenic 30.0%
! AAAGATGAAAAGTTTTGCGA+GGG + chr3.1:49183778-49183797 MS.gene05761:CDS 30.0%
! AGAAAAGTAGCTTTTGCTTT+AGG - chr3.1:49182789-49182808 None:intergenic 30.0%
! AGAAGAAGAAAAGTATGTCA+TGG + chr3.1:49184134-49184153 MS.gene05761:CDS 30.0%
! ATCAAAGTAGGACATTTTAC+TGG - chr3.1:49182942-49182961 None:intergenic 30.0%
! TATTTGTTAGAAGGATGACT+CGG + chr3.1:49183602-49183621 MS.gene05761:intron 30.0%
! TTAATGGTTGCTATTATGTG+TGG + chr3.1:49181939-49181958 MS.gene05761:intron 30.0%
! TTGGTTTATTTCTCTCAAGA+TGG + chr3.1:49181840-49181859 MS.gene05761:CDS 30.0%
! TTGTCTGAAGCAAATCTTAT+AGG + chr3.1:49184334-49184353 MS.gene05761:CDS 30.0%
!! GGCATAGATGTTTTGTTAAT+TGG + chr3.1:49182513-49182532 MS.gene05761:intron 30.0%
!! TACTGGTTTCTTTGCATTAA+TGG - chr3.1:49182925-49182944 None:intergenic 30.0%
!!! TATGCCATTTTGTTTTCATG+GGG + chr3.1:49183285-49183304 MS.gene05761:intron 30.0%
!!! TGCCTTTTTGAGTTTAGAAA+TGG + chr3.1:49183011-49183030 MS.gene05761:intron 30.0%
!!! TGGTTTTAGTATGATTGAGA+AGG + chr3.1:49182049-49182068 MS.gene05761:intron 30.0%
AAGAAGAGCTTATGACTTAG+TGG + chr3.1:49183075-49183094 MS.gene05761:intron 35.0%
ACCAAAACAAAGATACCCTT+TGG + chr3.1:49181542-49181561 MS.gene05761:CDS 35.0%
ACTAAGTCATAAGCTCTTCT+TGG - chr3.1:49183076-49183095 None:intergenic 35.0%
AGGAAAAGGATACAGCAATA+TGG + chr3.1:49184277-49184296 MS.gene05761:CDS 35.0%
ATAAGCGCTTGTCATATAAC+TGG + chr3.1:49183402-49183421 MS.gene05761:intron 35.0%
ATAATTCCGTGAAGTGATGA+AGG - chr3.1:49183917-49183936 None:intergenic 35.0%
CATTTGTGCTTCACAAAAAG+AGG + chr3.1:49184060-49184079 MS.gene05761:CDS 35.0%
CTCCAATTCTATGTTTGGAT+GGG - chr3.1:49182601-49182620 None:intergenic 35.0%
GTTTATCCTTCATCAAAGTG+TGG + chr3.1:49181564-49181583 MS.gene05761:CDS 35.0%
TAAAGAACTTCAGCTTGTGT+TGG + chr3.1:49181821-49181840 MS.gene05761:CDS 35.0%
TAATTCCGTGAAGTGATGAA+GGG - chr3.1:49183916-49183935 None:intergenic 35.0%
TACCCATCCAAACATAGAAT+TGG + chr3.1:49182596-49182615 MS.gene05761:intron 35.0%
TTGAAAAGTTGCTTCTAGGT+CGG - chr3.1:49183127-49183146 None:intergenic 35.0%
TTGATCATTGTCATAAGTGG+TGG + chr3.1:49182625-49182644 MS.gene05761:intron 35.0%
TTTCATCTTTCGTAGAGCTT+TGG - chr3.1:49183768-49183787 None:intergenic 35.0%
! CATTTCCCACAATTGTTTCT+CGG - chr3.1:49183990-49184009 None:intergenic 35.0%
! CTCTTTTTGTGAAGCACAAA+TGG - chr3.1:49184062-49184081 None:intergenic 35.0%
! CTTGTTGATATGGATTGTGT+TGG + chr3.1:49182017-49182036 MS.gene05761:intron 35.0%
! GAAAGATGAAAAGTTTTGCG+AGG + chr3.1:49183777-49183796 MS.gene05761:CDS 35.0%
! TTGCTGTTATGCAAGGTTTA+AGG + chr3.1:49184257-49184276 MS.gene05761:CDS 35.0%
! TTGGGTGAAGAAGTTGATTA+TGG + chr3.1:49181962-49181981 MS.gene05761:intron 35.0%
!! AATGAAGCTTGTTGGTAAAG+AGG + chr3.1:49184006-49184025 MS.gene05761:CDS 35.0%
!! ATCTCTTCTAGAACATCAGA+TGG - chr3.1:49181783-49181802 None:intergenic 35.0%
!! GAAAGAGAATAGGGTTGATA+AGG + chr3.1:49181905-49181924 MS.gene05761:intron 35.0%
!! TAGGGTTGATAAGGAAACTA+TGG + chr3.1:49181914-49181933 MS.gene05761:intron 35.0%
!! TGGAGGTTTTTGATTGGTTA+AGG + chr3.1:49181883-49181902 MS.gene05761:intron 35.0%
!! TGTGTTGATGGTTGATCATT+TGG + chr3.1:49182312-49182331 MS.gene05761:intron 35.0%
!! TGTTTTGTTAATTGGAGTCG+TGG + chr3.1:49182521-49182540 MS.gene05761:intron 35.0%
!!! ACCAAAGGGTATCTTTGTTT+TGG - chr3.1:49181546-49181565 None:intergenic 35.0%
AAAACATCTATGCCCGTGTT+TGG - chr3.1:49182507-49182526 None:intergenic 40.0%
AACTGTAAATCTCGGGTTTC+AGG - chr3.1:49183700-49183719 None:intergenic 40.0%
AAGAGATTCATGGTGTGCTT+TGG + chr3.1:49181863-49181882 MS.gene05761:intron 40.0%
AAGCAATTGAAGAGCTTGAG+AGG + chr3.1:49181745-49181764 MS.gene05761:CDS 40.0%
AAGTGCATATGGGACATCAT+AGG - chr3.1:49183265-49183284 None:intergenic 40.0%
AATGCTAACCACACACTAAC+TGG - chr3.1:49182671-49182690 None:intergenic 40.0%
AGAGATGAATGACCGTCTTT+CGG + chr3.1:49181797-49181816 MS.gene05761:CDS 40.0%
ATGTTTGGATGGGTATAAGC+AGG - chr3.1:49182591-49182610 None:intergenic 40.0%
CTCAAGATGGAAGAGATTCA+TGG + chr3.1:49181853-49181872 MS.gene05761:CDS 40.0%
CTTATACTCAACTCAAGTCG+AGG + chr3.1:49182812-49182831 MS.gene05761:intron 40.0%
GAAGAGGAGGAAGAAGAAAT+GGG + chr3.1:49181708-49181727 MS.gene05761:CDS 40.0%
GAAGTTCTTTAGCCGAAAGA+CGG - chr3.1:49181812-49181831 None:intergenic 40.0%
GCAACTCTATCCAAATACTC+AGG - chr3.1:49184241-49184260 None:intergenic 40.0%
GCTCCAATTCTATGTTTGGA+TGG - chr3.1:49182602-49182621 None:intergenic 40.0%
GGGATTCTATCCTGAGTATT+TGG + chr3.1:49184228-49184247 MS.gene05761:CDS 40.0%
GGTATAAGCAGGAAAGACAA+AGG - chr3.1:49182580-49182599 None:intergenic 40.0%
GTAATTCGGTTTAGAGAAGC+TGG + chr3.1:49183674-49183693 MS.gene05761:CDS 40.0%
GTACATTTCCAGTTAGTGTG+TGG + chr3.1:49182660-49182679 MS.gene05761:intron 40.0%
GTACCAATCAGATCTTCTAG+CGG + chr3.1:49183850-49183869 MS.gene05761:CDS 40.0%
GTATCTTGCTTGGAAGATGA+TGG + chr3.1:49182196-49182215 MS.gene05761:CDS 40.0%
TCATGGGGCAGATAAGAATA+GGG + chr3.1:49183300-49183319 MS.gene05761:intron 40.0%
TCCAAATGGGTGATTCAAGA+TGG + chr3.1:49183887-49183906 MS.gene05761:CDS 40.0%
TCTGCCCCATGAAAACAAAA+TGG - chr3.1:49183292-49183311 None:intergenic 40.0%
TGCTTGTTTGTTTGTGCAAG+AGG + chr3.1:49182109-49182128 MS.gene05761:CDS 40.0%
TTCACGGAATTATTCACGAG+AGG + chr3.1:49183924-49183943 MS.gene05761:CDS 40.0%
TTCATGGGGCAGATAAGAAT+AGG + chr3.1:49183299-49183318 MS.gene05761:intron 40.0%
TTGTGGGAAATGAAGCTTGT+TGG + chr3.1:49183998-49184017 MS.gene05761:CDS 40.0%
! GATAGAGTTGCTGTTATGCA+AGG + chr3.1:49184250-49184269 MS.gene05761:CDS 40.0%
! GCGCTGTTAGATTGGTAATT+CGG + chr3.1:49183660-49183679 MS.gene05761:CDS 40.0%
! GGTTGCTATTATGTGTGGTT+GGG + chr3.1:49181944-49181963 MS.gene05761:intron 40.0%
! TGGTTGCTATTATGTGTGGT+TGG + chr3.1:49181943-49181962 MS.gene05761:intron 40.0%
!! TTTGCATGTGTTTGGTTCTG+CGG + chr3.1:49182345-49182364 MS.gene05761:intron 40.0%
!!! ACTCGGATGATTTGTTTTCC+AGG + chr3.1:49183619-49183638 MS.gene05761:intron 40.0%
!!! ATGATTTGTTTTCCAGGCTG+AGG + chr3.1:49183625-49183644 MS.gene05761:intron 40.0%
!!! GTGCTTTGGAGGTTTTTGAT+TGG + chr3.1:49181877-49181896 MS.gene05761:intron 40.0%
!!! TGATTTGTTTTCCAGGCTGA+GGG + chr3.1:49183626-49183645 MS.gene05761:intron 40.0%
AAGAGCTTGAGAGGATGACA+AGG + chr3.1:49181754-49181773 MS.gene05761:CDS 45.0%
ACCAAACACATGCAAAGCGA+AGG - chr3.1:49182341-49182360 None:intergenic 45.0%
AGAGCTTGAGAGGATGACAA+GGG + chr3.1:49181755-49181774 MS.gene05761:CDS 45.0%
AGATTCATGGTGTGCTTTGG+AGG + chr3.1:49181866-49181885 MS.gene05761:intron 45.0%
ATCTATGCCCGTGTTTGGTT+CGG - chr3.1:49182502-49182521 None:intergenic 45.0%
ATGGAGCGCGATTATCCAAA+TGG + chr3.1:49183873-49183892 MS.gene05761:CDS 45.0%
CAACTCAAGTCGAGGTTTGA+AGG + chr3.1:49182820-49182839 MS.gene05761:intron 45.0%
CAATCAGATCTTCTAGCGGA+TGG + chr3.1:49183854-49183873 MS.gene05761:CDS 45.0%
CATCCGCTAGAAGATCTGAT+TGG - chr3.1:49183856-49183875 None:intergenic 45.0%
CCAAACACATGCAAAGCGAA+GGG - chr3.1:49182340-49182359 None:intergenic 45.0%
CGAAGAGGAGGAAGAAGAAA+TGG + chr3.1:49181707-49181726 MS.gene05761:CDS 45.0%
CTGTAAGCTCAACGTCTTCT+AGG - chr3.1:49183826-49183845 None:intergenic 45.0%
GAGGAAGAAGAAATGGGAGA+TGG + chr3.1:49181714-49181733 MS.gene05761:CDS 45.0%
GCCATCTTGAATCACCCATT+TGG - chr3.1:49183891-49183910 None:intergenic 45.0%
GCTTATCTAGGCGAGCATAT+AGG - chr3.1:49183177-49183196 None:intergenic 45.0%
GTAGTGAGGATGATCCTGAA+GGG + chr3.1:49182153-49182172 MS.gene05761:CDS 45.0%
TCTTGTTGCAATGACTGCTG+TGG + chr3.1:49183721-49183740 MS.gene05761:CDS 45.0%
TGCAATGACTGCTGTGGTTA+AGG + chr3.1:49183727-49183746 MS.gene05761:CDS 45.0%
TGGAGCGCGATTATCCAAAT+GGG + chr3.1:49183874-49183893 MS.gene05761:CDS 45.0%
TGGGATATGGGAGAGAAAGA+TGG + chr3.1:49182086-49182105 MS.gene05761:CDS 45.0%
TGTAGTGAGGATGATCCTGA+AGG + chr3.1:49182152-49182171 MS.gene05761:CDS 45.0%
TTACCAATCTAACAGCGCCT+CGG - chr3.1:49183658-49183677 None:intergenic 45.0%
! ATGAAAAGTTTTGCGAGGGC+TGG + chr3.1:49183782-49183801 MS.gene05761:CDS 45.0%
! CTTGCTATGTACATTTGCGC+CGG + chr3.1:49183950-49183969 MS.gene05761:CDS 45.0%
! CTTGTTGGTAAAGAGGCTGA+TGG + chr3.1:49184013-49184032 MS.gene05761:CDS 45.0%
! GATGATCCTGAAGGGCATAA+GGG + chr3.1:49182161-49182180 MS.gene05761:CDS 45.0%
! TGAAAAGTTTTGCGAGGGCT+GGG + chr3.1:49183783-49183802 MS.gene05761:CDS 45.0%
!! AGCTTTGCTGTTAGCCTCTT+TGG + chr3.1:49183239-49183258 MS.gene05761:intron 45.0%
!! ATTTGTTTTCCAGGCTGAGG+GGG + chr3.1:49183628-49183647 MS.gene05761:intron 45.0%
!! GATTGTGTTGGTTTGAGACC+TGG + chr3.1:49182029-49182048 MS.gene05761:intron 45.0%
!! GATTTGTTTTCCAGGCTGAG+GGG + chr3.1:49183627-49183646 MS.gene05761:intron 45.0%
!! TGACAAGCACTTCTGAGACT+AGG - chr3.1:49183499-49183518 None:intergenic 45.0%
!!! TGCAAGAGGTTTTGAGACGT+GGG + chr3.1:49182123-49182142 MS.gene05761:CDS 45.0%
ACGTGGGATTGCTTGTAGTG+AGG + chr3.1:49182139-49182158 MS.gene05761:CDS 50.0%
CAACAGCGAGGCTAATGACA+CGG + chr3.1:49184089-49184108 MS.gene05761:CDS 50.0%
CCCTTCGCTTTGCATGTGTT+TGG + chr3.1:49182337-49182356 MS.gene05761:intron 50.0%
CGAGGCCGAGAAACAATTGT+GGG + chr3.1:49183982-49184001 MS.gene05761:CDS 50.0%
CGGCGCAAATGTACATAGCA+AGG - chr3.1:49183952-49183971 None:intergenic 50.0%
TCGAGGCCGAGAAACAATTG+TGG + chr3.1:49183981-49184000 MS.gene05761:CDS 50.0%
TGGGACATCATAGGCCAAAG+AGG - chr3.1:49183256-49183275 None:intergenic 50.0%
TTCCAAGCAAGATACCCCGT+TGG - chr3.1:49182191-49182210 None:intergenic 50.0%
! GGATGATCCTGAAGGGCATA+AGG + chr3.1:49182160-49182179 MS.gene05761:CDS 50.0%
! GTTGGTAAAGAGGCTGATGG+AGG + chr3.1:49184016-49184035 MS.gene05761:CDS 50.0%
!!! GTGCAAGAGGTTTTGAGACG+TGG + chr3.1:49182122-49182141 MS.gene05761:CDS 50.0%
AGCGAGGCTAATGACACGGT+TGG + chr3.1:49184093-49184112 MS.gene05761:CDS 55.0%
AGGGCATAAGGGTGGACCAA+CGG + chr3.1:49182172-49182191 MS.gene05761:CDS 55.0%
CCCTCCAACCGAACCAAACA+CGG + chr3.1:49182491-49182510 MS.gene05761:intron 55.0%
CCTCCAACCGAACCAAACAC+GGG + chr3.1:49182492-49182511 MS.gene05761:intron 55.0%
GGCAGCCCTTCATCACTTCA+CGG + chr3.1:49183908-49183927 MS.gene05761:CDS 55.0%
GTTTCTCGGCCTCGATTCCA+CGG - chr3.1:49183976-49183995 None:intergenic 55.0%
! GACCAACGGGGTATCTTGCT+TGG + chr3.1:49182186-49182205 MS.gene05761:CDS 55.0%
! GATCCTGAAGGGCATAAGGG+TGG + chr3.1:49182164-49182183 MS.gene05761:CDS 55.0%
!! ATGCCCGTGTTTGGTTCGGT+TGG - chr3.1:49182498-49182517 None:intergenic 55.0%
!! CCGTGTTTGGTTCGGTTGGA+GGG - chr3.1:49182494-49182513 None:intergenic 55.0%
!! CTACCGAGGCGCTGTTAGAT+TGG + chr3.1:49183652-49183671 MS.gene05761:CDS 55.0%
AAGAGGCTGCGTCAACAGCG+AGG + chr3.1:49184077-49184096 MS.gene05761:CDS 60.0%
CGTCGTCGCTCGTCACGAAT+TGG - chr3.1:49181689-49181708 None:intergenic 60.0%
GGCATAAGGGTGGACCAACG+GGG + chr3.1:49182174-49182193 MS.gene05761:CDS 60.0%
GGGCATAAGGGTGGACCAAC+GGG + chr3.1:49182173-49182192 MS.gene05761:CDS 60.0%
GGTCCACCCTTATGCCCTTC+AGG - chr3.1:49182170-49182189 None:intergenic 60.0%
! ATGTACATTTGCGCCGGCCG+TGG + chr3.1:49183956-49183975 MS.gene05761:CDS 60.0%
!! CCCGTGTTTGGTTCGGTTGG+AGG - chr3.1:49182495-49182514 None:intergenic 60.0%
CGTGACGAGCGACGACGAAG+AGG + chr3.1:49181692-49181711 MS.gene05761:CDS 65.0%
GACGAGCGACGACGAAGAGG+AGG + chr3.1:49181695-49181714 MS.gene05761:CDS 65.0%
CAGGCTGAGGGGGACTACCG+AGG + chr3.1:49183638-49183657 MS.gene05761:intron 70.0%
CTCGGCCTCGATTCCACGGC+CGG - chr3.1:49183972-49183991 None:intergenic 70.0%
CTCGGTAGTCCCCCTCAGCC+TGG - chr3.1:49183640-49183659 None:intergenic 70.0%
! TTGCGCCGGCCGTGGAATCG+AGG + chr3.1:49183964-49183983 MS.gene05761:CDS 70.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 49181477 49184417 49181477 ID=MS.gene05761
chr3.1 mRNA 49181477 49184417 49181477 ID=MS.gene05761.t1;Parent=MS.gene05761
chr3.1 exon 49181477 49181874 49181477 ID=MS.gene05761.t1.exon1;Parent=MS.gene05761.t1
chr3.1 CDS 49181477 49181874 49181477 ID=cds.MS.gene05761.t1;Parent=MS.gene05761.t1
chr3.1 exon 49182058 49182217 49182058 ID=MS.gene05761.t1.exon2;Parent=MS.gene05761.t1
chr3.1 CDS 49182058 49182217 49182058 ID=cds.MS.gene05761.t1;Parent=MS.gene05761.t1
chr3.1 exon 49183641 49184417 49183641 ID=MS.gene05761.t1.exon3;Parent=MS.gene05761.t1
chr3.1 CDS 49183641 49184417 49183641 ID=cds.MS.gene05761.t1;Parent=MS.gene05761.t1
Gene Sequence

>MS.gene05761

ATGGCTTATGCAAATGGGTTTACTTCAACGTTGAAATTGGGTTTTGTGTTTTCATCTCAAATTTCACCAAAACAAAGATACCCTTTGGTTTATCCTTCATCAAAGTGTGGATTTTTACTCAAATTCAATGATGGGTCATTCAAATATCAAAACCCTTTATTTGTAGCAAAACCAATTTCAATTAAGAGGAAAAATTCAGTGGAACTTGACCAATTCGTGACGAGCGACGACGAAGAGGAGGAAGAAGAAATGGGAGATGGATTCTTAGAAGCAATTGAAGAGCTTGAGAGGATGACAAGGGAACCATCTGATGTTCTAGAAGAGATGAATGACCGTCTTTCGGCTAAAGAACTTCAGCTTGTGTTGGTTTATTTCTCTCAAGATGGAAGAGATTCATGGTGTGCTTTGGAGGTTTTTGATTGGTTAAGGAAAGAGAATAGGGTTGATAAGGAAACTATGGAGTTAATGGTTGCTATTATGTGTGGTTGGGTGAAGAAGTTGATTATGGAAAAACATGGTGTTGGTGATGTTGTTGATCTTCTTGTTGATATGGATTGTGTTGGTTTGAGACCTGGTTTTAGTATGATTGAGAAGGTTATTTCTTTGTATTGGGATATGGGAGAGAAAGATGGTGCTTGTTTGTTTGTGCAAGAGGTTTTGAGACGTGGGATTGCTTGTAGTGAGGATGATCCTGAAGGGCATAAGGGTGGACCAACGGGGTATCTTGCTTGGAAGATGATGGTAAGAATTTGATAGTTATTGTCTATGTTTTTATTATTTAGTTCGAGAATGGAAAATTTGAATGATTGTGTCTTGTGTTGTATAACATTTTGATTGTGTTGATGGTTGATCATTTGGTTCCCTTCGCTTTGCATGTGTTTGGTTCTGCGGTGACAAAGTTGATTATAATATAATTGGTTTTGATTAAAAGTTAGTTTAACATAACGTCATTTATGTATGAATAATGTATGAGAAAACTGTTCTTTATCAATTCATTACAAACTCGAATTTGAGCCCTCCAACCGAACCAAACACGGGCATAGATGTTTTGTTAATTGGAGTCGTGGTGTTTTTGAATTGCTTGTTTTGCATTGTTATTGCCTTTGTCTTTCCTGCTTATACCCATCCAAACATAGAATTGGAGCTTTTTGATCATTGTCATAAGTGGTGGAATAGCTTGATTGTACATTTCCAGTTAGTGTGTGGTTAGCATTTGACAAACTTGATTTTATAAAATTGAATTTGGTTATGTTTGGCTGTATTTACTTTAAAAGCAAGTTTGATCAAAAACTTAGCTCAATTTTTTCTTCCTAAAGCAAAAGCTACTTTTCTTTACTTATACTCAACTCAAGTCGAGGTTTGAAGGTAGAACCAATTTTCATTTACAAACTACAAAGTAACCAAATATCTATATATTTTTACTAAAATCACAACAGTAGTTAAAACCATTAATGCAAAGAAACCAGTAAAATGTCCTACTTTGATTTTAAATTATGTTTCGATACTAGCTGCAAGTGCTTCTCTATAAAAATAATGCCTTTTTGAGTTTAGAAATGGTGTTTGGATTATTTAATTGTATATAGTTCTAGAATTGCTCCAAGAAGAGCTTATGACTTAGTGGCAACTATCATCGAAACACAGAATTAGCCGACCTAGAAGCAACTTTTCAAACTAGAGCTTCTATGAATTGGTCTTCTCCTATATGCTCGCCTAGATAAGCTTATGATATTTGTGGTTAGAGCACTTTGCGACTCATATAGTTAGCTTTGCTGTTAGCCTCTTTGGCCTATGATGTCCCATATGCACTTTATGCCATTTTGTTTTCATGGGGCAGATAAGAATAGGGATTTTTTTATCAGTTGTATTTAACCAATTTTTGGAATAAGGATATGTTTGGATAAACTATTAAATTAAACGCTTATAGCATAAGCGCTTGTCATATAACTGGTTATTTTTATGACAAGATAAAATAAAGTCAAAATGTTTTCATGTAAGTTATAAGTTATTTTCATACGCTGTCCTAGTCTCAGAAGTGCTTGTCAGTAGATGAGCTGAAATAAGTCAATCAAAATAGATCCTAAATTAATATTACTAGATTTATATCGCAGTTTTCCTGATCATCAGTTATTTGTTAGAAGGATGACTCGGATGATTTGTTTTCCAGGCTGAGGGGGACTACCGAGGCGCTGTTAGATTGGTAATTCGGTTTAGAGAAGCTGGCCTGAAACCCGAGATTTACAGTTATCTTGTTGCAATGACTGCTGTGGTTAAGGAGCTCAATGAGTTAGCCAAAGCTCTACGAAAGATGAAAAGTTTTGCGAGGGCTGGGTTGATAACTGAATTCGACCTAGAAGACGTTGAGCTTACAGAAAAGTACCAATCAGATCTTCTAGCGGATGGAGCGCGATTATCCAAATGGGTGATTCAAGATGGCAGCCCTTCATCACTTCACGGAATTATTCACGAGAGGCTCCTTGCTATGTACATTTGCGCCGGCCGTGGAATCGAGGCCGAGAAACAATTGTGGGAAATGAAGCTTGTTGGTAAAGAGGCTGATGGAGGTCTCTACGACATTGTTCTAGCCATTTGTGCTTCACAAAAAGAGGCTGCGTCAACAGCGAGGCTAATGACACGGTTGGAAGTTGCGAGCTCGCAGCAGAAGAAGAAAAGTATGTCATGGTTATTAAGAGGTTATATTAAAGGTGGTCATTTTAGTGAAGCAGCAGAGACTGTAATGAAAATGCTTGAATTGGGATTCTATCCTGAGTATTTGGATAGAGTTGCTGTTATGCAAGGTTTAAGGAAAAGGATACAGCAATATGGAAATTTAGATCTTTATATCAAGCTTTGCAAGTCATTGTCTGAAGCAAATCTTATAGGACCTTGTCTTGTGTATTTGTATGTTAGAAAATATAAGCTTTGGGTTGTGAAAATGATCTAA

Protein sequence

>MS.gene05761.t1

MAYANGFTSTLKLGFVFSSQISPKQRYPLVYPSSKCGFLLKFNDGSFKYQNPLFVAKPISIKRKNSVELDQFVTSDDEEEEEEMGDGFLEAIEELERMTREPSDVLEEMNDRLSAKELQLVLVYFSQDGRDSCMIEKVISLYWDMGEKDGACLFVQEVLRRGIACSEDDPEGHKGGPTGYLAWKMMAEGDYRGAVRLVIRFREAGLKPEIYSYLVAMTAVVKELNELAKALRKMKSFARAGLITEFDLEDVELTEKYQSDLLADGARLSKWVIQDGSPSSLHGIIHERLLAMYICAGRGIEAEKQLWEMKLVGKEADGGLYDIVLAICASQKEAASTARLMTRLEVASSQQKKKSMSWLLRGYIKGGHFSEAAETVMKMLELGFYPEYLDRVAVMQGLRKRIQQYGNLDLYIKLCKSLSEANLIGPCLVYLYVRKYKLWVVKMI