Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65835.t1 | RHN61540.1 | 79.6 | 54 | 11 | 0 | 33 | 86 | 74 | 127 | 3.10E-16 | 95.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65835.t1 | Q9LIH6 | 57.4 | 54 | 23 | 0 | 33 | 86 | 172 | 225 | 6.2e-13 | 76.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65835.t1 | A0A072UXG3 | 79.6 | 54 | 11 | 0 | 33 | 86 | 121 | 174 | 2.3e-16 | 95.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053396 | MS.gene65835 | 0.873012 | 2.04E-67 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65835.t1 | MTR_4g074280 | 79.630 | 54 | 11 | 0 | 33 | 86 | 121 | 174 | 5.76e-23 | 95.5 |
| MS.gene65835.t1 | MTR_4g074300 | 68.519 | 54 | 17 | 0 | 33 | 86 | 122 | 175 | 1.90e-19 | 85.9 |
| MS.gene65835.t1 | MTR_4g074330 | 62.963 | 54 | 20 | 0 | 33 | 86 | 144 | 197 | 1.33e-17 | 81.3 |
| MS.gene65835.t1 | MTR_1g090620 | 90.625 | 32 | 3 | 0 | 2 | 33 | 55 | 86 | 3.77e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65835.t1 | AT3G18630 | 57.407 | 54 | 23 | 0 | 33 | 86 | 172 | 225 | 2.84e-15 | 75.1 |
Find 78 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCAACTCAATTGAAATTA+TGG | 0.134418 | 3.2:+9594436 | MS.gene65835:CDS |
| AAGACTCGGGGACGTCTTTA+TGG | 0.233436 | 3.2:+9594477 | MS.gene65835:CDS |
| CTCAAGTACATTCTTCAAAA+TGG | 0.251262 | 3.2:-9591991 | None:intergenic |
| CATAATTTCAATTGAGTTGC+AGG | 0.269649 | 3.2:-9594435 | None:intergenic |
| AGATTAGGACACATTATATT+AGG | 0.275665 | 3.2:+9591720 | MS.gene65835:intron |
| TAAGAAGAGCACACAGGATT+TGG | 0.292178 | 3.2:+9594681 | MS.gene65835:CDS |
| TCTTGAGCAGGAAGCATATA+AGG | 0.293287 | 3.2:+9594368 | MS.gene65835:intron |
| GAGGAGGTTAAGAATGATAT+TGG | 0.297392 | 3.2:+9592011 | MS.gene65835:CDS |
| GCTTCACCAAGTCCAGAATA+AGG | 0.324501 | 3.2:-9591924 | None:intergenic |
| TGCAACTCAATTGAAATTAT+GGG | 0.353224 | 3.2:+9594437 | MS.gene65835:CDS |
| TCTTTATGGTACTGGTGATA+TGG | 0.360936 | 3.2:+9594491 | MS.gene65835:CDS |
| TAAGAATGATATTGGTTGTA+AGG | 0.362595 | 3.2:+9592019 | MS.gene65835:CDS |
| GATGCAGGGCAGCTGGATAC+AGG | 0.367904 | 3.2:+9593479 | MS.gene65835:CDS |
| GGAGATACAACTGAAGGAAT+TGG | 0.373917 | 3.2:+9594702 | MS.gene65835:CDS |
| GATGCACGGCAGTCGGATAC+AGG | 0.375011 | 3.2:+9593524 | MS.gene65835:CDS |
| AATGAAGGGGAGTCGGATGC+AGG | 0.398008 | 3.2:+9593449 | MS.gene65835:CDS |
| GCTATCATTCTCGGTTCCTC+AGG | 0.399999 | 3.2:+9591953 | MS.gene65835:CDS |
| ATGGAGAAGGCATCTGATAA+TGG | 0.413051 | 3.2:+9594396 | MS.gene65835:CDS |
| TCTGGACTTGGTGAAGCAAT+GGG | 0.415496 | 3.2:+9591930 | MS.gene65835:CDS |
| GCAGCTGGATACAGGGCATC+TGG | 0.424953 | 3.2:+9593487 | MS.gene65835:CDS |
| GAATATTGATAAGACTTTGA+AGG | 0.433586 | 3.2:+9591754 | MS.gene65835:CDS |
| AATTATGGGCTGAATCAGTT+GGG | 0.435146 | 3.2:+9594451 | MS.gene65835:CDS |
| TAGGAACCTTATTCTGGACT+TGG | 0.437107 | 3.2:+9591918 | MS.gene65835:intron |
| GATGCAGGGGAGCAAGATGC+AGG | 0.440869 | 3.2:+9593464 | MS.gene65835:CDS |
| TCACTTTGATCAATATTGTC+AGG | 0.442772 | 3.2:+9591796 | MS.gene65835:CDS |
| AAATTATGGGCTGAATCAGT+TGG | 0.456563 | 3.2:+9594450 | MS.gene65835:CDS |
| GGAGCAAGATGCAGGGCAGC+TGG | 0.459296 | 3.2:+9593472 | MS.gene65835:CDS |
| CGGGGACGTCTTTATGGTAC+TGG | 0.462779 | 3.2:+9594483 | MS.gene65835:CDS |
| ACGGTGTCAGCCAATCTTGA+TGG | 0.470478 | 3.2:-9594740 | None:intergenic |
| AGCAATGGGGCTATCATTCT+CGG | 0.477510 | 3.2:+9591944 | MS.gene65835:CDS |
| GGAAGCATATAAGGAGAAGA+TGG | 0.480276 | 3.2:+9594377 | MS.gene65835:intron |
| TTCTGGACTTGGTGAAGCAA+TGG | 0.481020 | 3.2:+9591929 | MS.gene65835:CDS |
| CCGACTCCCCTTCATTCAGC+TGG | 0.484775 | 3.2:-9593442 | None:intergenic |
| GATACAGGGCATCTGGATGT+AGG | 0.493578 | 3.2:+9593494 | MS.gene65835:CDS |
| GACGCAGACCAGCTGAATGA+AGG | 0.498682 | 3.2:+9593434 | MS.gene65835:CDS |
| AGTGTTGCTTCCATCAAGAT+TGG | 0.500365 | 3.2:+9594730 | MS.gene65835:CDS |
| GTATCCGACTGCCGTGCATC+CGG | 0.506762 | 3.2:-9593521 | None:intergenic |
| GCATCTGGATGTAGGGCAGC+CGG | 0.510669 | 3.2:+9593502 | MS.gene65835:CDS |
| CAAGCGACTAAGAATCTACA+TGG | 0.511335 | 3.2:+9593359 | MS.gene65835:CDS |
| AGTACATTCTTCAAAATGGA+TGG | 0.513241 | 3.2:-9591987 | None:intergenic |
| ATCAGTTGGGGAAAAGACTC+GGG | 0.520712 | 3.2:+9594464 | MS.gene65835:CDS |
| TGGTCTGCGTCCCTCTGCCA+TGG | 0.521247 | 3.2:-9593422 | None:intergenic |
| GGTTGTAAGGTTCTACCTCA+TGG | 0.523538 | 3.2:+9592032 | MS.gene65835:CDS |
| ATGGTAAAGCGCGACAAGCC+AGG | 0.524120 | 3.2:+9594510 | MS.gene65835:CDS |
| AGTTGCAGGATCAACCTCCT+TGG | 0.527395 | 3.2:-9594421 | None:intergenic |
| AATCAGTTGGGGAAAAGACT+CGG | 0.529570 | 3.2:+9594463 | MS.gene65835:CDS |
| ATGAAGGGGAGTCGGATGCA+GGG | 0.537318 | 3.2:+9593450 | MS.gene65835:CDS |
| ACGCAGACCAGCTGAATGAA+GGG | 0.538664 | 3.2:+9593435 | MS.gene65835:CDS |
| GTCGCTTGTTTCAACTTATG+CGG | 0.544680 | 3.2:-9593344 | None:intergenic |
| TGAAGGGGAGTCGGATGCAG+GGG | 0.545352 | 3.2:+9593451 | MS.gene65835:CDS |
| ATACAGGGCATCTGGATGTA+GGG | 0.550689 | 3.2:+9593495 | MS.gene65835:CDS |
| TTTGAAGAATGTACTTGAGG+AGG | 0.565288 | 3.2:+9591995 | MS.gene65835:CDS |
| ATGTAGGGCAGCCGGATGCA+CGG | 0.575761 | 3.2:+9593510 | MS.gene65835:CDS |
| ACGCTACAACACCATGGCAG+AGG | 0.576642 | 3.2:+9593411 | MS.gene65835:CDS |
| CGCTACAACACCATGGCAGA+GGG | 0.584181 | 3.2:+9593412 | MS.gene65835:CDS |
| CCAGCTGAATGAAGGGGAGT+CGG | 0.584342 | 3.2:+9593442 | MS.gene65835:CDS |
| ATGCAGGGCAGCTGGATACA+GGG | 0.585703 | 3.2:+9593480 | MS.gene65835:CDS |
| GTAGAGAGCAAATGCAGCAG+AGG | 0.591348 | 3.2:+9594618 | MS.gene65835:intron |
| CTATCATTCTCGGTTCCTCA+GGG | 0.594726 | 3.2:+9591954 | MS.gene65835:CDS |
| TACTAAAGAAAACTGTGAGA+AGG | 0.596894 | 3.2:+9593286 | MS.gene65835:CDS |
| GAAAACTGTGAGAAGGTCAA+AGG | 0.597308 | 3.2:+9593293 | MS.gene65835:CDS |
| ATGCAGGGGAGCAAGATGCA+GGG | 0.599090 | 3.2:+9593465 | MS.gene65835:CDS |
| TGATGCTCGAGTTGCACGTG+AGG | 0.614438 | 3.2:+9594642 | MS.gene65835:CDS |
| ATGCACGGCAGTCGGATACA+GGG | 0.614645 | 3.2:+9593525 | MS.gene65835:CDS |
| GCAGCCGGATGCACGGCAGT+CGG | 0.617223 | 3.2:+9593517 | MS.gene65835:CDS |
| GGCATCTGATAATGGAACCA+AGG | 0.625874 | 3.2:+9594404 | MS.gene65835:CDS |
| TGCACGTGAGGAATGTCGCA+AGG | 0.630916 | 3.2:+9594654 | MS.gene65835:CDS |
| ATATAAGGAGAAGATGGAGA+AGG | 0.632833 | 3.2:+9594383 | MS.gene65835:CDS |
| CGCAGACCAGCTGAATGAAG+GGG | 0.641381 | 3.2:+9593436 | MS.gene65835:CDS |
| GGCTAATAAGAAGAGCACAC+AGG | 0.656946 | 3.2:+9594675 | MS.gene65835:CDS |
| ATTATGGGCTGAATCAGTTG+GGG | 0.658835 | 3.2:+9594452 | MS.gene65835:CDS |
| GGATTTGGAGATACAACTGA+AGG | 0.659048 | 3.2:+9594696 | MS.gene65835:CDS |
| CTGGACTTGGTGAAGCAATG+GGG | 0.690829 | 3.2:+9591931 | MS.gene65835:CDS |
| TCAGTTGGGGAAAAGACTCG+GGG | 0.699015 | 3.2:+9594465 | MS.gene65835:CDS |
| GATGGAAATCTGACTCCCTG+AGG | 0.707288 | 3.2:-9591969 | None:intergenic |
| GTGATGACGCTACAACACCA+TGG | 0.716250 | 3.2:+9593405 | MS.gene65835:CDS |
| GTTGTAGCGTCATCACTGAG+AGG | 0.716312 | 3.2:-9593398 | None:intergenic |
| ATCTGATAATGGAACCAAGG+AGG | 0.721491 | 3.2:+9594407 | MS.gene65835:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAATCTATAAAATTGATA+TGG | - | chr3.2:9593657-9593676 | None:intergenic | 10.0% |
| !!! | ATATCAATTTTATAGATTTA+AGG | + | chr3.2:9593656-9593675 | MS.gene65835:intron | 10.0% |
| !!! | TAAATTTTTTATTTTGAAAG+AGG | - | chr3.2:9593798-9593817 | None:intergenic | 10.0% |
| !! | AAATTTATAGAATCATCTAA+TGG | - | chr3.2:9592840-9592859 | None:intergenic | 15.0% |
| !! | AATAAAATATACTAAAGTGA+CGG | + | chr3.2:9592249-9592268 | MS.gene65835:intron | 15.0% |
| !! | ATTAGATGATTCTATAAATT+TGG | + | chr3.2:9592839-9592858 | MS.gene65835:intron | 15.0% |
| !!! | AATCTTAAGATTATTTTCAA+GGG | + | chr3.2:9593611-9593630 | MS.gene65835:intron | 15.0% |
| !!! | ACAACTTAAATTTAATTTCA+GGG | + | chr3.2:9592472-9592491 | MS.gene65835:intron | 15.0% |
| !!! | ATTTTTAAGAATGAAATGTT+TGG | - | chr3.2:9592163-9592182 | None:intergenic | 15.0% |
| !!! | CACTTTAGTATATTTTATTA+CGG | - | chr3.2:9592248-9592267 | None:intergenic | 15.0% |
| !!! | TAATCTTAAGATTATTTTCA+AGG | + | chr3.2:9593610-9593629 | MS.gene65835:intron | 15.0% |
| !! | AAAAAAGTGATTTCTTTGAA+TGG | + | chr3.2:9592196-9592215 | MS.gene65835:intron | 20.0% |
| !! | ATAATACACCAAATATAGTA+AGG | - | chr3.2:9592623-9592642 | None:intergenic | 20.0% |
| !! | ATCTATAAAATTGATATGGA+AGG | - | chr3.2:9593653-9593672 | None:intergenic | 20.0% |
| !! | ATTACTAAACAAAAGTTCAA+GGG | - | chr3.2:9593038-9593057 | None:intergenic | 20.0% |
| !! | TAATACACCAAATATAGTAA+GGG | - | chr3.2:9592622-9592641 | None:intergenic | 20.0% |
| !! | TATTACTAAACAAAAGTTCA+AGG | - | chr3.2:9593039-9593058 | None:intergenic | 20.0% |
| !! | TCTATAGAAATGTTAGAAAT+TGG | + | chr3.2:9592099-9592118 | MS.gene65835:intron | 20.0% |
| !! | TTAAGATTATGATCATGATT+AGG | - | chr3.2:9593599-9593618 | None:intergenic | 20.0% |
| !! | TTAGAACATTAATTAGTGTA+TGG | - | chr3.2:9593178-9593197 | None:intergenic | 20.0% |
| !!! | AATTTTATAGATTTAAGGCT+GGG | + | chr3.2:9593661-9593680 | MS.gene65835:intron | 20.0% |
| !!! | CACAACTTAAATTTAATTTC+AGG | + | chr3.2:9592471-9592490 | MS.gene65835:intron | 20.0% |
| !!! | CTATATTCTCTTATGTTTTT+TGG | + | chr3.2:9593251-9593270 | MS.gene65835:intron | 20.0% |
| !!! | CTGAAATTAAATTTAAGTTG+TGG | - | chr3.2:9592473-9592492 | None:intergenic | 20.0% |
| !!! | CTTTTTTGCAAAAAATTGAA+AGG | - | chr3.2:9592222-9592241 | None:intergenic | 20.0% |
| !!! | GCATATAATTTTCAATTTTG+CGG | + | chr3.2:9594069-9594088 | MS.gene65835:intron | 20.0% |
| !!! | GTGCAGTTAATTATTTTTTT+GGG | - | chr3.2:9593872-9593891 | None:intergenic | 20.0% |
| !!! | TAACAAATGTGTTTTTGTTT+TGG | + | chr3.2:9593115-9593134 | MS.gene65835:intron | 20.0% |
| !!! | TCTTTTACATATTGAATTTG+AGG | + | chr3.2:9593067-9593086 | MS.gene65835:intron | 20.0% |
| !!! | TTAAATTGTTTCTATACGAA+TGG | + | chr3.2:9591586-9591605 | MS.gene65835:intron | 20.0% |
| !!! | TTTTTTATTTTGAAAGAGGA+AGG | - | chr3.2:9593794-9593813 | None:intergenic | 20.0% |
| ! | AAAATGACCCTTACTATATT+TGG | + | chr3.2:9592612-9592631 | MS.gene65835:intron | 25.0% |
| ! | AGATTAGGACACATTATATT+AGG | + | chr3.2:9591720-9591739 | MS.gene65835:intron | 25.0% |
| ! | ATTCACAATTAAAGCATACA+TGG | + | chr3.2:9592294-9592313 | MS.gene65835:intron | 25.0% |
| ! | ATTCTTATGTAAGGAATAGT+TGG | - | chr3.2:9593771-9593790 | None:intergenic | 25.0% |
| ! | GAATATTGATAAGACTTTGA+AGG | + | chr3.2:9591754-9591773 | MS.gene65835:CDS | 25.0% |
| ! | TGCAACTCAATTGAAATTAT+GGG | + | chr3.2:9594437-9594456 | MS.gene65835:CDS | 25.0% |
| ! | TTCTTATGTAAGGAATAGTT+GGG | - | chr3.2:9593770-9593789 | None:intergenic | 25.0% |
| ! | TTCTTTATTGAATCAGATTG+CGG | + | chr3.2:9594104-9594123 | MS.gene65835:intron | 25.0% |
| ! | TTGAATAAATTGTGCATGTT+GGG | + | chr3.2:9594156-9594175 | MS.gene65835:intron | 25.0% |
| ! | TTGGAGTAAATGATTCAATT+CGG | + | chr3.2:9592858-9592877 | MS.gene65835:intron | 25.0% |
| !! | ATAATTTTCAATTTTGCGGA+TGG | + | chr3.2:9594073-9594092 | MS.gene65835:intron | 25.0% |
| !! | TAAGAATGATATTGGTTGTA+AGG | + | chr3.2:9592019-9592038 | MS.gene65835:CDS | 25.0% |
| !! | TCTATAGAAGCTTTAATCAA+TGG | - | chr3.2:9592087-9592106 | None:intergenic | 25.0% |
| !!! | AAAGTTGGATTTTTTTGATC+TGG | + | chr3.2:9591690-9591709 | MS.gene65835:intron | 25.0% |
| !!! | AAATGTGTTTTTGTTTTGGT+TGG | + | chr3.2:9593119-9593138 | MS.gene65835:intron | 25.0% |
| !!! | AAGTTGGATTTTTTTGATCT+GGG | + | chr3.2:9591691-9591710 | MS.gene65835:intron | 25.0% |
| !!! | CAATTTTATAGATTTAAGGC+TGG | + | chr3.2:9593660-9593679 | MS.gene65835:intron | 25.0% |
| !!! | GATAATTATCATGGTTTTAC+TGG | + | chr3.2:9591826-9591845 | MS.gene65835:intron | 25.0% |
| !!! | GATTTTGATTTTGGTCTTTT+AGG | + | chr3.2:9591899-9591918 | MS.gene65835:intron | 25.0% |
| !!! | GGTGCAGTTAATTATTTTTT+TGG | - | chr3.2:9593873-9593892 | None:intergenic | 25.0% |
| !!! | GGTTAGTTTGATAATTATCA+TGG | + | chr3.2:9591817-9591836 | MS.gene65835:intron | 25.0% |
| !!! | TACTTCACTGATTTTGATTT+TGG | + | chr3.2:9591890-9591909 | MS.gene65835:intron | 25.0% |
| AAATGAGTGAACAACAGAAA+GGG | - | chr3.2:9592388-9592407 | None:intergenic | 30.0% | |
| AATACTCAACATTGTTGTAG+AGG | - | chr3.2:9593993-9594012 | None:intergenic | 30.0% | |
| AGTACATTCTTCAAAATGGA+TGG | - | chr3.2:9591990-9592009 | None:intergenic | 30.0% | |
| ATGAATGATTGAAGTCCTTA+AGG | + | chr3.2:9593142-9593161 | MS.gene65835:intron | 30.0% | |
| ATTAGCACTATAAGCTCAAT+TGG | - | chr3.2:9592985-9593004 | None:intergenic | 30.0% | |
| CTCAAGTACATTCTTCAAAA+TGG | - | chr3.2:9591994-9592013 | None:intergenic | 30.0% | |
| CTGCAACTCAATTGAAATTA+TGG | + | chr3.2:9594436-9594455 | MS.gene65835:CDS | 30.0% | |
| GACAATGCATAAAATATGCA+AGG | - | chr3.2:9593930-9593949 | None:intergenic | 30.0% | |
| GTTGAATAAATTGTGCATGT+TGG | + | chr3.2:9594155-9594174 | MS.gene65835:intron | 30.0% | |
| GTTTATTCTAAATGCAGAGT+GGG | + | chr3.2:9592359-9592378 | MS.gene65835:intron | 30.0% | |
| TACTAAAGAAAACTGTGAGA+AGG | + | chr3.2:9593286-9593305 | MS.gene65835:CDS | 30.0% | |
| TCACTTTGATCAATATTGTC+AGG | + | chr3.2:9591796-9591815 | MS.gene65835:CDS | 30.0% | |
| TCATGGCAATCTTGAAAAAT+GGG | + | chr3.2:9592049-9592068 | MS.gene65835:CDS | 30.0% | |
| TGTGAACACATTATGAAGTT+AGG | + | chr3.2:9592331-9592350 | MS.gene65835:intron | 30.0% | |
| TGTTTATTCTAAATGCAGAG+TGG | + | chr3.2:9592358-9592377 | MS.gene65835:intron | 30.0% | |
| TTATTCAACATTCCTGTGAA+AGG | - | chr3.2:9594144-9594163 | None:intergenic | 30.0% | |
| ! | CATAATTTCAATTGAGTTGC+AGG | - | chr3.2:9594438-9594457 | None:intergenic | 30.0% |
| ! | GTTGAGTATTGTCAACTATT+TGG | + | chr3.2:9594003-9594022 | MS.gene65835:intron | 30.0% |
| ! | TAATTAACTGCACCTCTTTT+TGG | + | chr3.2:9593879-9593898 | MS.gene65835:intron | 30.0% |
| ! | TCAAGTCCTGATTGAATTTT+GGG | + | chr3.2:9591631-9591650 | MS.gene65835:intron | 30.0% |
| ! | TTACTGAATTTTGTTCTCAC+AGG | + | chr3.2:9592502-9592521 | MS.gene65835:intron | 30.0% |
| !! | AAGATTATTTTCAAGGGCAA+GGG | + | chr3.2:9593617-9593636 | MS.gene65835:intron | 30.0% |
| !! | CATTTTGAAGAATGTACTTG+AGG | + | chr3.2:9591992-9592011 | MS.gene65835:CDS | 30.0% |
| !! | GATTTGTGGTTTTTGAAAGT+TGG | + | chr3.2:9591675-9591694 | MS.gene65835:intron | 30.0% |
| !! | TAAGATTATTTTCAAGGGCA+AGG | + | chr3.2:9593616-9593635 | MS.gene65835:intron | 30.0% |
| !! | TATGCGAACTTTAAAACAGA+CGG | - | chr3.2:9593205-9593224 | None:intergenic | 30.0% |
| !! | TTGTAACTAGCTTTCAATTC+AGG | + | chr3.2:9592667-9592686 | MS.gene65835:intron | 30.0% |
| !!! | TATGTTTTTTGGACAGATCA+TGG | + | chr3.2:9593262-9593281 | MS.gene65835:intron | 30.0% |
| !!! | TCATGGTTTTACTGGTTTTT+AGG | + | chr3.2:9591834-9591853 | MS.gene65835:intron | 30.0% |
| ACAAGAATCCTTCCAATAGT+AGG | + | chr3.2:9593829-9593848 | MS.gene65835:intron | 35.0% | |
| AGAGGAAGGATTCTTATGTA+AGG | - | chr3.2:9593780-9593799 | None:intergenic | 35.0% | |
| AGTCATAAACTGTTTGTGCA+TGG | + | chr3.2:9592577-9592596 | MS.gene65835:intron | 35.0% | |
| ATATAAGGAGAAGATGGAGA+AGG | + | chr3.2:9594383-9594402 | MS.gene65835:CDS | 35.0% | |
| ATTGGAAGGATTCTTGTCTA+GGG | - | chr3.2:9593826-9593845 | None:intergenic | 35.0% | |
| CAAATGAGTGAACAACAGAA+AGG | - | chr3.2:9592389-9592408 | None:intergenic | 35.0% | |
| CTCATGGCAATCTTGAAAAA+TGG | + | chr3.2:9592048-9592067 | MS.gene65835:CDS | 35.0% | |
| GAGGAGGTTAAGAATGATAT+TGG | + | chr3.2:9592011-9592030 | MS.gene65835:CDS | 35.0% | |
| GCAAATGCACATGCAAATAT+AGG | + | chr3.2:9592709-9592728 | MS.gene65835:intron | 35.0% | |
| TATGGTGTACATGTTCCTTA+AGG | - | chr3.2:9593160-9593179 | None:intergenic | 35.0% | |
| TATTGGAAGGATTCTTGTCT+AGG | - | chr3.2:9593827-9593846 | None:intergenic | 35.0% | |
| TGCATAAAATATGCAAGGTC+CGG | - | chr3.2:9593925-9593944 | None:intergenic | 35.0% | |
| TGTTGCAATTACTATCTCAG+TGG | + | chr3.2:9594047-9594066 | MS.gene65835:intron | 35.0% | |
| TTTGAAGAATGTACTTGAGG+AGG | + | chr3.2:9591995-9592014 | MS.gene65835:CDS | 35.0% | |
| ! | AAATTATGGGCTGAATCAGT+TGG | + | chr3.2:9594450-9594469 | MS.gene65835:CDS | 35.0% |
| ! | AATTATGGGCTGAATCAGTT+GGG | + | chr3.2:9594451-9594470 | MS.gene65835:CDS | 35.0% |
| ! | CAAGTCCTGATTGAATTTTG+GGG | + | chr3.2:9591632-9591651 | MS.gene65835:intron | 35.0% |
| ! | GAACTTCTCATCAAGAGTAT+TGG | + | chr3.2:9592546-9592565 | MS.gene65835:intron | 35.0% |
| ! | GTCAAGTCCTGATTGAATTT+TGG | + | chr3.2:9591630-9591649 | MS.gene65835:intron | 35.0% |
| ! | TCTGTCCTTTTTCTTGTACT+AGG | + | chr3.2:9593729-9593748 | MS.gene65835:intron | 35.0% |
| !! | AACTAGCTTTCAATTCAGGT+AGG | + | chr3.2:9592671-9592690 | MS.gene65835:intron | 35.0% |
| !! | ATGTTTGTTTTCTCTTGAGC+AGG | + | chr3.2:9594356-9594375 | MS.gene65835:intron | 35.0% |
| !! | ATTGAATTTTGGGGATCTGA+AGG | + | chr3.2:9591641-9591660 | MS.gene65835:intron | 35.0% |
| !! | GAATTGACTTGTGTTTGACT+TGG | + | chr3.2:9591608-9591627 | MS.gene65835:intron | 35.0% |
| !! | GTCTTTTAGGAACCTTATTC+TGG | + | chr3.2:9591912-9591931 | MS.gene65835:intron | 35.0% |
| !! | TCTTTATGGTACTGGTGATA+TGG | + | chr3.2:9594491-9594510 | MS.gene65835:CDS | 35.0% |
| !! | TTGAATTTTGGGGATCTGAA+GGG | + | chr3.2:9591642-9591661 | MS.gene65835:intron | 35.0% |
| !!! | ATCATCCACTTTTTCATCTG+TGG | - | chr3.2:9593320-9593339 | None:intergenic | 35.0% |
| !!! | CATTTTTCAAGATTGCCATG+AGG | - | chr3.2:9592050-9592069 | None:intergenic | 35.0% |
| !!! | TTTTTTGGGTGTATACCCAT+AGG | - | chr3.2:9593858-9593877 | None:intergenic | 35.0% |
| AAGGTCCACAGATGAAAAAG+TGG | + | chr3.2:9593312-9593331 | MS.gene65835:CDS | 40.0% | |
| AATCAGTTGGGGAAAAGACT+CGG | + | chr3.2:9594463-9594482 | MS.gene65835:CDS | 40.0% | |
| ACGATCATAGAGAAGAAGGA+AGG | + | chr3.2:9592763-9592782 | MS.gene65835:intron | 40.0% | |
| AGATGAGATGAAATCGACGT+AGG | + | chr3.2:9593091-9593110 | MS.gene65835:intron | 40.0% | |
| AGTATGCGCAGGAGAAAATT+CGG | + | chr3.2:9592809-9592828 | MS.gene65835:intron | 40.0% | |
| ATAGGTCTCCTACTATTGGA+AGG | - | chr3.2:9593840-9593859 | None:intergenic | 40.0% | |
| ATGGAGATACATGTGATTGC+TGG | - | chr3.2:9594551-9594570 | None:intergenic | 40.0% | |
| CAAGACGATCATAGAGAAGA+AGG | + | chr3.2:9592759-9592778 | MS.gene65835:intron | 40.0% | |
| CAAGCGACTAAGAATCTACA+TGG | + | chr3.2:9593359-9593378 | MS.gene65835:CDS | 40.0% | |
| CAGATCCCCAAAATTCAATC+AGG | - | chr3.2:9591640-9591659 | None:intergenic | 40.0% | |
| CATAAAATATGCAAGGTCCG+GGG | - | chr3.2:9593923-9593942 | None:intergenic | 40.0% | |
| CGATCATAGAGAAGAAGGAA+GGG | + | chr3.2:9592764-9592783 | MS.gene65835:intron | 40.0% | |
| CTGAAGCATAAGAGCAAGTA+TGG | - | chr3.2:9593015-9593034 | None:intergenic | 40.0% | |
| GAAAACTGTGAGAAGGTCAA+AGG | + | chr3.2:9593293-9593312 | MS.gene65835:CDS | 40.0% | |
| GATCATAGAGAAGAAGGAAG+GGG | + | chr3.2:9592765-9592784 | MS.gene65835:intron | 40.0% | |
| GCAGAAACATGGCTACTATA+TGG | - | chr3.2:9594570-9594589 | None:intergenic | 40.0% | |
| GCATAAAATATGCAAGGTCC+GGG | - | chr3.2:9593924-9593943 | None:intergenic | 40.0% | |
| GGAGATACAACTGAAGGAAT+TGG | + | chr3.2:9594702-9594721 | MS.gene65835:CDS | 40.0% | |
| GGATTTGGAGATACAACTGA+AGG | + | chr3.2:9594696-9594715 | MS.gene65835:CDS | 40.0% | |
| GTCGCTTGTTTCAACTTATG+CGG | - | chr3.2:9593347-9593366 | None:intergenic | 40.0% | |
| TAGGAACCTTATTCTGGACT+TGG | + | chr3.2:9591918-9591937 | MS.gene65835:intron | 40.0% | |
| TCCAATAGTAGGAGACCTAT+GGG | + | chr3.2:9593840-9593859 | MS.gene65835:intron | 40.0% | |
| TCTTAGTTTCCACCTTTCAC+AGG | + | chr3.2:9594129-9594148 | MS.gene65835:intron | 40.0% | |
| TCTTGAAAAATGGGATGTGC+AGG | + | chr3.2:9592058-9592077 | MS.gene65835:CDS | 40.0% | |
| TGGAGATACATGTGATTGCT+GGG | - | chr3.2:9594550-9594569 | None:intergenic | 40.0% | |
| TGTTCACTCATTTGTGCAGA+TGG | + | chr3.2:9592395-9592414 | MS.gene65835:intron | 40.0% | |
| TTCAACATTCCTGTGAAAGG+TGG | - | chr3.2:9594141-9594160 | None:intergenic | 40.0% | |
| TTCCAATAGTAGGAGACCTA+TGG | + | chr3.2:9593839-9593858 | MS.gene65835:intron | 40.0% | |
| ! | ATTATGGGCTGAATCAGTTG+GGG | + | chr3.2:9594452-9594471 | MS.gene65835:CDS | 40.0% |
| ! | GGAAGCATATAAGGAGAAGA+TGG | + | chr3.2:9594377-9594396 | MS.gene65835:intron | 40.0% |
| ! | TAAGAAGAGCACACAGGATT+TGG | + | chr3.2:9594681-9594700 | MS.gene65835:CDS | 40.0% |
| ! | TATAGTAGCCATGTTTCTGC+CGG | + | chr3.2:9594570-9594589 | MS.gene65835:intron | 40.0% |
| ! | TCTTGAGCAGGAAGCATATA+AGG | + | chr3.2:9594368-9594387 | MS.gene65835:intron | 40.0% |
| !! | AGGGTGTTTTTGTGGATTTG+TGG | + | chr3.2:9591661-9591680 | MS.gene65835:intron | 40.0% |
| !! | AGTGACGGATTTCAGATTTG+TGG | + | chr3.2:9592264-9592283 | MS.gene65835:intron | 40.0% |
| !! | AGTGTTGCTTCCATCAAGAT+TGG | + | chr3.2:9594730-9594749 | MS.gene65835:CDS | 40.0% |
| !! | ATCTGATAATGGAACCAAGG+AGG | + | chr3.2:9594407-9594426 | MS.gene65835:CDS | 40.0% |
| !! | ATGGAGAAGGCATCTGATAA+TGG | + | chr3.2:9594396-9594415 | MS.gene65835:CDS | 40.0% |
| ACCCATAGGTCTCCTACTAT+TGG | - | chr3.2:9593844-9593863 | None:intergenic | 45.0% | |
| AGCAATGGGGCTATCATTCT+CGG | + | chr3.2:9591944-9591963 | MS.gene65835:CDS | 45.0% | |
| ATACATGTGATTGCTGGGTC+AGG | - | chr3.2:9594545-9594564 | None:intergenic | 45.0% | |
| ATCAGTTGGGGAAAAGACTC+GGG | + | chr3.2:9594464-9594483 | MS.gene65835:CDS | 45.0% | |
| CTATCATTCTCGGTTCCTCA+GGG | + | chr3.2:9591954-9591973 | MS.gene65835:CDS | 45.0% | |
| GAGCGCCTAGTACAAGAAAA+AGG | - | chr3.2:9593737-9593756 | None:intergenic | 45.0% | |
| GCTTCACCAAGTCCAGAATA+AGG | - | chr3.2:9591927-9591946 | None:intergenic | 45.0% | |
| GGTTGTAAGGTTCTACCTCA+TGG | + | chr3.2:9592032-9592051 | MS.gene65835:CDS | 45.0% | |
| TACATGTGATTGCTGGGTCA+GGG | - | chr3.2:9594544-9594563 | None:intergenic | 45.0% | |
| TGATCTGGGTCTTGCAGATT+AGG | + | chr3.2:9591705-9591724 | MS.gene65835:intron | 45.0% | |
| ! | ATACAGGGCATCTGGATGTA+GGG | + | chr3.2:9593495-9593514 | MS.gene65835:CDS | 45.0% |
| ! | ATAGTAGCCATGTTTCTGCC+GGG | + | chr3.2:9594571-9594590 | MS.gene65835:intron | 45.0% |
| ! | GCTTTATCTAGTGAAGCACC+TGG | - | chr3.2:9593575-9593594 | None:intergenic | 45.0% |
| ! | GGCTAATAAGAAGAGCACAC+AGG | + | chr3.2:9594675-9594694 | MS.gene65835:CDS | 45.0% |
| !! | ACTGCACCTCTTTTTGGTAG+TGG | + | chr3.2:9593885-9593904 | MS.gene65835:intron | 45.0% |
| !! | GGCATCTGATAATGGAACCA+AGG | + | chr3.2:9594404-9594423 | MS.gene65835:CDS | 45.0% |
| !! | TCTGGACTTGGTGAAGCAAT+GGG | + | chr3.2:9591930-9591949 | MS.gene65835:CDS | 45.0% |
| !! | TTCTGGACTTGGTGAAGCAA+TGG | + | chr3.2:9591929-9591948 | MS.gene65835:CDS | 45.0% |
| !!! | GGATCTGAAGGGTGTTTTTG+TGG | + | chr3.2:9591653-9591672 | MS.gene65835:intron | 45.0% |
| AAGACTCGGGGACGTCTTTA+TGG | + | chr3.2:9594477-9594496 | MS.gene65835:CDS | 50.0% | |
| ACGCAGACCAGCTGAATGAA+GGG | + | chr3.2:9593435-9593454 | MS.gene65835:CDS | 50.0% | |
| AGTTGCAGGATCAACCTCCT+TGG | - | chr3.2:9594424-9594443 | None:intergenic | 50.0% | |
| GATGGAAATCTGACTCCCTG+AGG | - | chr3.2:9591972-9591991 | None:intergenic | 50.0% | |
| GATGTGGGAATAGTATGCGC+AGG | + | chr3.2:9592798-9592817 | MS.gene65835:intron | 50.0% | |
| GCATCTAGATGCAGTGCAGT+TGG | + | chr3.2:9593547-9593566 | MS.gene65835:intron | 50.0% | |
| GCTATCATTCTCGGTTCCTC+AGG | + | chr3.2:9591953-9591972 | MS.gene65835:CDS | 50.0% | |
| GTAGAGAGCAAATGCAGCAG+AGG | + | chr3.2:9594618-9594637 | MS.gene65835:intron | 50.0% | |
| GTTGTAGCGTCATCACTGAG+AGG | - | chr3.2:9593401-9593420 | None:intergenic | 50.0% | |
| TCAGTTGGGGAAAAGACTCG+GGG | + | chr3.2:9594465-9594484 | MS.gene65835:CDS | 50.0% | |
| TGAGCTTAGCTCAGCTGGTT+GGG | - | chr3.2:9593952-9593971 | None:intergenic | 50.0% | |
| ! | AAGGGGTCGTGTTTCTGATG+TGG | + | chr3.2:9592782-9592801 | MS.gene65835:intron | 50.0% |
| ! | AGGGGTCGTGTTTCTGATGT+GGG | + | chr3.2:9592783-9592802 | MS.gene65835:intron | 50.0% |
| ! | GATACAGGGCATCTGGATGT+AGG | + | chr3.2:9593494-9593513 | MS.gene65835:CDS | 50.0% |
| ! | GTGATGACGCTACAACACCA+TGG | + | chr3.2:9593405-9593424 | MS.gene65835:CDS | 50.0% |
| !! | CTGGACTTGGTGAAGCAATG+GGG | + | chr3.2:9591931-9591950 | MS.gene65835:CDS | 50.0% |
| !!! | ACCTCTTTTTGGTAGTGGCC+GGG | + | chr3.2:9593890-9593909 | MS.gene65835:intron | 50.0% |
| !!! | CACCTCTTTTTGGTAGTGGC+CGG | + | chr3.2:9593889-9593908 | MS.gene65835:intron | 50.0% |
| AATGAAGGGGAGTCGGATGC+AGG | + | chr3.2:9593449-9593468 | MS.gene65835:CDS | 55.0% | |
| ACGCTACAACACCATGGCAG+AGG | + | chr3.2:9593411-9593430 | MS.gene65835:CDS | 55.0% | |
| ATGAAGGGGAGTCGGATGCA+GGG | + | chr3.2:9593450-9593469 | MS.gene65835:CDS | 55.0% | |
| ATGCACGGCAGTCGGATACA+GGG | + | chr3.2:9593525-9593544 | MS.gene65835:CDS | 55.0% | |
| ATGCAGGGCAGCTGGATACA+GGG | + | chr3.2:9593480-9593499 | MS.gene65835:CDS | 55.0% | |
| ATGCAGGGGAGCAAGATGCA+GGG | + | chr3.2:9593465-9593484 | MS.gene65835:CDS | 55.0% | |
| ATGGTAAAGCGCGACAAGCC+AGG | + | chr3.2:9594510-9594529 | MS.gene65835:CDS | 55.0% | |
| ATGTGATTGCTGGGTCAGGG+AGG | - | chr3.2:9594541-9594560 | None:intergenic | 55.0% | |
| CAGCAATCCCGGCAGAAACA+TGG | - | chr3.2:9594581-9594600 | None:intergenic | 55.0% | |
| CCAGCTGAATGAAGGGGAGT+CGG | + | chr3.2:9593442-9593461 | MS.gene65835:CDS | 55.0% | |
| CGCAGACCAGCTGAATGAAG+GGG | + | chr3.2:9593436-9593455 | MS.gene65835:CDS | 55.0% | |
| CGCTACAACACCATGGCAGA+GGG | + | chr3.2:9593412-9593431 | MS.gene65835:CDS | 55.0% | |
| CGGGGACGTCTTTATGGTAC+TGG | + | chr3.2:9594483-9594502 | MS.gene65835:CDS | 55.0% | |
| GACGCAGACCAGCTGAATGA+AGG | + | chr3.2:9593434-9593453 | MS.gene65835:CDS | 55.0% | |
| GATGCAGTGCAGTTGGATCC+AGG | + | chr3.2:9593554-9593573 | MS.gene65835:intron | 55.0% | |
| GTGAGCTTAGCTCAGCTGGT+TGG | - | chr3.2:9593953-9593972 | None:intergenic | 55.0% | |
| TGCACGTGAGGAATGTCGCA+AGG | + | chr3.2:9594654-9594673 | MS.gene65835:CDS | 55.0% | |
| TGCCATCTGTGCAGCAATCC+CGG | - | chr3.2:9594592-9594611 | None:intergenic | 55.0% | |
| ! | TGATGCTCGAGTTGCACGTG+AGG | + | chr3.2:9594642-9594661 | MS.gene65835:CDS | 55.0% |
| !!! | CCTCTTTTTGGTAGTGGCCG+GGG | + | chr3.2:9593891-9593910 | MS.gene65835:intron | 55.0% |
| AAGGTCCGGGGTTCAAACCC+CGG | - | chr3.2:9593911-9593930 | None:intergenic | 60.0% | |
| ATGTAGGGCAGCCGGATGCA+CGG | + | chr3.2:9593510-9593529 | MS.gene65835:CDS | 60.0% | |
| CCAGCTGAGCTAAGCTCACG+AGG | + | chr3.2:9593954-9593973 | MS.gene65835:intron | 60.0% | |
| CCCCGGCCACTACCAAAAAG+AGG | - | chr3.2:9593894-9593913 | None:intergenic | 60.0% | |
| CCGACTCCCCTTCATTCAGC+TGG | - | chr3.2:9593445-9593464 | None:intergenic | 60.0% | |
| CCTCGTGAGCTTAGCTCAGC+TGG | - | chr3.2:9593957-9593976 | None:intergenic | 60.0% | |
| GATGCACGGCAGTCGGATAC+AGG | + | chr3.2:9593524-9593543 | MS.gene65835:CDS | 60.0% | |
| GATGCAGGGCAGCTGGATAC+AGG | + | chr3.2:9593479-9593498 | MS.gene65835:CDS | 60.0% | |
| GATGCAGGGGAGCAAGATGC+AGG | + | chr3.2:9593464-9593483 | MS.gene65835:CDS | 60.0% | |
| GCATCTGGATGTAGGGCAGC+CGG | + | chr3.2:9593502-9593521 | MS.gene65835:CDS | 60.0% | |
| GTATCCGACTGCCGTGCATC+CGG | - | chr3.2:9593524-9593543 | None:intergenic | 60.0% | |
| TGAAGGGGAGTCGGATGCAG+GGG | + | chr3.2:9593451-9593470 | MS.gene65835:CDS | 60.0% | |
| TGCCGGGATTGCTGCACAGA+TGG | + | chr3.2:9594587-9594606 | MS.gene65835:intron | 60.0% | |
| TGGGTCAGGGAGGATACACC+TGG | - | chr3.2:9594531-9594550 | None:intergenic | 60.0% | |
| ! | GCAGCTGGATACAGGGCATC+TGG | + | chr3.2:9593487-9593506 | MS.gene65835:CDS | 60.0% |
| AGTGGCCGGGGTTTGAACCC+CGG | + | chr3.2:9593903-9593922 | MS.gene65835:intron | 65.0% | |
| GGAGCAAGATGCAGGGCAGC+TGG | + | chr3.2:9593472-9593491 | MS.gene65835:CDS | 65.0% | |
| TGGTCTGCGTCCCTCTGCCA+TGG | - | chr3.2:9593425-9593444 | None:intergenic | 65.0% | |
| GCAGCCGGATGCACGGCAGT+CGG | + | chr3.2:9593517-9593536 | MS.gene65835:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 9591582 | 9594756 | 9591582 | ID=MS.gene65835 |
| chr3.2 | mRNA | 9591582 | 9594756 | 9591582 | ID=MS.gene65835.t1;Parent=MS.gene65835 |
| chr3.2 | exon | 9591582 | 9591584 | 9591582 | ID=MS.gene65835.t1.exon1;Parent=MS.gene65835.t1 |
| chr3.2 | CDS | 9591582 | 9591584 | 9591582 | ID=cds.MS.gene65835.t1;Parent=MS.gene65835.t1 |
| chr3.2 | exon | 9591722 | 9591817 | 9591722 | ID=MS.gene65835.t1.exon2;Parent=MS.gene65835.t1 |
| chr3.2 | CDS | 9591722 | 9591817 | 9591722 | ID=cds.MS.gene65835.t1;Parent=MS.gene65835.t1 |
| chr3.2 | exon | 9591921 | 9592079 | 9591921 | ID=MS.gene65835.t1.exon3;Parent=MS.gene65835.t1 |
| chr3.2 | CDS | 9591921 | 9592079 | 9591921 | ID=cds.MS.gene65835.t1;Parent=MS.gene65835.t1 |
| chr3.2 | exon | 9593278 | 9593559 | 9593278 | ID=MS.gene65835.t1.exon4;Parent=MS.gene65835.t1 |
| chr3.2 | CDS | 9593278 | 9593559 | 9593278 | ID=cds.MS.gene65835.t1;Parent=MS.gene65835.t1 |
| chr3.2 | exon | 9594378 | 9594533 | 9594378 | ID=MS.gene65835.t1.exon5;Parent=MS.gene65835.t1 |
| chr3.2 | CDS | 9594378 | 9594533 | 9594378 | ID=cds.MS.gene65835.t1;Parent=MS.gene65835.t1 |
| chr3.2 | exon | 9594622 | 9594756 | 9594622 | ID=MS.gene65835.t1.exon6;Parent=MS.gene65835.t1 |
| chr3.2 | CDS | 9594622 | 9594756 | 9594622 | ID=cds.MS.gene65835.t1;Parent=MS.gene65835.t1 |
| Gene Sequence |
| Protein sequence |
