AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene053396


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053396.t1 MTR_4g074280 79.630 54 11 0 38 91 121 174 8.51e-23 95.5
MS.gene053396.t1 MTR_4g074300 68.519 54 17 0 38 91 122 175 3.22e-19 85.5
MS.gene053396.t1 MTR_4g074330 62.963 54 20 0 38 91 144 197 2.89e-17 80.5
MS.gene053396.t1 MTR_1g090620 90.625 32 3 0 7 38 55 86 3.17e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053396.t1 AT3G18630 57.407 54 23 0 38 91 172 225 4.37e-15 74.7

Find 84 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGACTCGGGGACGTCTTTA+TGG 0.233436 1.4:-27387160 MS.gene053396:CDS
CTCAAGTACATTCTTCAAAA+TGG 0.251262 1.4:+27389645 None:intergenic
AGATTAGGACACATTATATT+AGG 0.275665 1.4:-27389916 MS.gene053396:CDS
TCTTGAGCAGGAAGCATATA+AGG 0.293287 1.4:-27387269 MS.gene053396:intron
GAGGAGGTTAAGAATGATAT+TGG 0.297392 1.4:-27389625 MS.gene053396:CDS
GATAATTTCAATTGAGTTGC+AGG 0.300222 1.4:+27387202 None:intergenic
TGCAACTCAATTGAAATTAT+CGG 0.315538 1.4:-27387200 MS.gene053396:CDS
GCTTCACCAAGTCCAGAATA+AGG 0.324501 1.4:+27389712 None:intergenic
ATGGAGATACATGCGATTGC+TGG 0.359833 1.4:+27387089 None:intergenic
TCTTTATGGTACTGGTGATA+TGG 0.360936 1.4:-27387146 MS.gene053396:CDS
TAAGAATGATATTGGTTGTA+AGG 0.362595 1.4:-27389617 MS.gene053396:CDS
GATGCAGGGCAGCTGGATAC+AGG 0.367904 1.4:-27388155 MS.gene053396:CDS
GATGCACGGCAGTCGGATAC+AGG 0.375011 1.4:-27388110 MS.gene053396:CDS
AATGAAGGGGAGTCGGATGC+AGG 0.398008 1.4:-27388185 MS.gene053396:CDS
GCTATCATTCTCGGTTCCTC+AGG 0.399999 1.4:-27389683 MS.gene053396:CDS
GCAGAAACATGGCTACTATA+TGG 0.400846 1.4:+27387070 None:intergenic
ATGGAGAAGGCATCTGATAA+TGG 0.413051 1.4:-27387241 MS.gene053396:CDS
TCTGGACTTGGTGAAGCAAT+GGG 0.415496 1.4:-27389706 MS.gene053396:CDS
ATACATGCGATTGCTGGGTC+AGG 0.420610 1.4:+27387095 None:intergenic
GCAGCTGGATACAGGGCATC+TGG 0.424953 1.4:-27388147 MS.gene053396:CDS
GAATATTGATAAGACTTTGA+AGG 0.433586 1.4:-27389882 MS.gene053396:CDS
AATTATCGGCTGAATCAGTT+GGG 0.435146 1.4:-27387186 MS.gene053396:CDS
TAGGAACCTTATTCTGGACT+TGG 0.437107 1.4:-27389718 MS.gene053396:CDS
GATGCAGGGGAGCAAGATGC+AGG 0.440869 1.4:-27388170 MS.gene053396:CDS
TCACTTTGATCAATATTGTC+AGG 0.442772 1.4:-27389840 MS.gene053396:intron
AAATTATCGGCTGAATCAGT+TGG 0.456563 1.4:-27387187 MS.gene053396:CDS
GGAGCAAGATGCAGGGCAGC+TGG 0.459296 1.4:-27388162 MS.gene053396:CDS
CGGGGACGTCTTTATGGTAC+TGG 0.462779 1.4:-27387154 MS.gene053396:CDS
TTCCATCTGTGCAGCAATCC+CGG 0.469928 1.4:+27387048 None:intergenic
ATGGTAAAGCGCTGCAAGCC+AGG 0.473032 1.4:-27387127 MS.gene053396:CDS
AGCAATGGGGCTATCATTCT+CGG 0.477510 1.4:-27389692 MS.gene053396:CDS
GGAAGCATATAAGGAGAAGA+TGG 0.480276 1.4:-27387260 MS.gene053396:CDS
TTCTGGACTTGGTGAAGCAA+TGG 0.481020 1.4:-27389707 MS.gene053396:CDS
TGCCGGGATTGCTGCACAGA+TGG 0.483729 1.4:-27387050 MS.gene053396:CDS
CCGACTCCCCTTCATTCAGC+TGG 0.484775 1.4:+27388192 None:intergenic
GATACAGGGCATCTGGATGT+AGG 0.493578 1.4:-27388140 MS.gene053396:CDS
GACGCAGACCAGCTGAATGA+AGG 0.498682 1.4:-27388200 MS.gene053396:CDS
GATGCAGTGCAGTTGGATCC+AGG 0.503877 1.4:-27388080 MS.gene053396:CDS
GTATCCGACTGCCGTGCATC+CGG 0.506762 1.4:+27388113 None:intergenic
GCATCTGGATGTAGGGCAGC+CGG 0.510669 1.4:-27388132 MS.gene053396:CDS
CAAGCGACTAAGAATCTACA+TGG 0.511335 1.4:-27388275 MS.gene053396:CDS
AGTACATTCTTCAAAATGGA+TGG 0.513241 1.4:+27389649 None:intergenic
TATAGTAGCCATGTTTCTGC+CGG 0.513695 1.4:-27387067 MS.gene053396:CDS
ATCAGTTGGGGAAAAGACTC+GGG 0.520712 1.4:-27387173 MS.gene053396:CDS
GCATCTAGATGCAGTGCAGT+TGG 0.520962 1.4:-27388087 MS.gene053396:CDS
TGGTCTGCGTCCCTCTGCCA+TGG 0.521247 1.4:+27388212 None:intergenic
GGTTGTAAGGTTCTACCTCA+TGG 0.523538 1.4:-27389604 MS.gene053396:CDS
CAGCAATCCCGGCAGAAACA+TGG 0.526514 1.4:+27387059 None:intergenic
AGTTGCAGGATCAACCTCCT+TGG 0.527395 1.4:+27387216 None:intergenic
TGGAGATACATGCGATTGCT+GGG 0.527838 1.4:+27387090 None:intergenic
AATCAGTTGGGGAAAAGACT+CGG 0.529570 1.4:-27387174 MS.gene053396:CDS
ATGAAGGGGAGTCGGATGCA+GGG 0.537318 1.4:-27388184 MS.gene053396:CDS
ACGCAGACCAGCTGAATGAA+GGG 0.538664 1.4:-27388199 MS.gene053396:CDS
TGAAGGGGAGTCGGATGCAG+GGG 0.545352 1.4:-27388183 MS.gene053396:CDS
ATACAGGGCATCTGGATGTA+GGG 0.550689 1.4:-27388139 MS.gene053396:CDS
TGGGTCAGGGAGGATACACC+TGG 0.562237 1.4:+27387109 None:intergenic
TTTGAAGAATGTACTTGAGG+AGG 0.565288 1.4:-27389641 MS.gene053396:CDS
ATAGTAGCCATGTTTCTGCC+GGG 0.566150 1.4:-27387066 MS.gene053396:CDS
ATGTAGGGCAGCCGGATGCA+CGG 0.575761 1.4:-27388124 MS.gene053396:CDS
ACGCTACAACACCATGGCAG+AGG 0.576642 1.4:-27388223 MS.gene053396:CDS
CGCTACAACACCATGGCAGA+GGG 0.584181 1.4:-27388222 MS.gene053396:CDS
CCAGCTGAATGAAGGGGAGT+CGG 0.584342 1.4:-27388192 MS.gene053396:CDS
TACATGCGATTGCTGGGTCA+GGG 0.585246 1.4:+27387096 None:intergenic
ATGCAGGGCAGCTGGATACA+GGG 0.585703 1.4:-27388154 MS.gene053396:CDS
TTGGATCCAGGTGTTTCACT+AGG 0.589935 1.4:-27388068 MS.gene053396:intron
GTAGAGAGCAAATGCAGCAG+AGG 0.591348 1.4:-27387019 MS.gene053396:CDS
CTATCATTCTCGGTTCCTCA+GGG 0.594726 1.4:-27389682 MS.gene053396:CDS
GAAAACTGTGAGAAGGTCAA+AGG 0.597308 1.4:-27388341 MS.gene053396:CDS
ATGCAGGGGAGCAAGATGCA+GGG 0.599090 1.4:-27388169 MS.gene053396:CDS
TCCTAAAGAAAACTGTGAGA+AGG 0.600517 1.4:-27388348 MS.gene053396:CDS
ATGCACGGCAGTCGGATACA+GGG 0.614645 1.4:-27388109 MS.gene053396:CDS
GCAGCCGGATGCACGGCAGT+CGG 0.617223 1.4:-27388117 MS.gene053396:CDS
GGCATCTGATAATGGAACCA+AGG 0.625874 1.4:-27387233 MS.gene053396:CDS
ATATAAGGAGAAGATGGAGA+AGG 0.632833 1.4:-27387254 MS.gene053396:CDS
CGCAGACCAGCTGAATGAAG+GGG 0.641381 1.4:-27388198 MS.gene053396:CDS
ATTATCGGCTGAATCAGTTG+GGG 0.676802 1.4:-27387185 MS.gene053396:CDS
GCTTTACCTAGTGAAACACC+TGG 0.684772 1.4:+27388062 None:intergenic
CTGGACTTGGTGAAGCAATG+GGG 0.690829 1.4:-27389705 MS.gene053396:CDS
TCAGTTGGGGAAAAGACTCG+GGG 0.699015 1.4:-27387172 MS.gene053396:CDS
ATGCGATTGCTGGGTCAGGG+AGG 0.699744 1.4:+27387099 None:intergenic
GATGGAAATCTGACTCCCTG+AGG 0.707288 1.4:+27389667 None:intergenic
GTGATGACGCTACAACACCA+TGG 0.716250 1.4:-27388229 MS.gene053396:CDS
GTTGTAGCGTCATCACTGAG+AGG 0.716312 1.4:+27388236 None:intergenic
ATCTGATAATGGAACCAAGG+AGG 0.721491 1.4:-27387230 MS.gene053396:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAATCTATAAAATTGATA+TGG + chr1.4:27389173-27389192 None:intergenic 10.0%
!!! ATATCAATTTTATAGATTTA+AGG - chr1.4:27389172-27389191 MS.gene053396:intron 10.0%
!!! TAAATTTTTTATTTTGAAAG+AGG + chr1.4:27389316-27389335 None:intergenic 10.0%
!! AAATTTATAGAATCATCTAA+TGG + chr1.4:27388354-27388373 None:intergenic 15.0%
!! AATAAAATATACTAAAGTGA+CGG - chr1.4:27387763-27387782 MS.gene053396:intron 15.0%
!! ATGAAATTAAATTAAAGTTG+TGG + chr1.4:27387987-27388006 None:intergenic 15.0%
!! ATTAGATGATTCTATAAATT+TGG - chr1.4:27388353-27388372 MS.gene053396:CDS 15.0%
!!! AATCTTAAGATTATTTTCAA+GGG - chr1.4:27389127-27389146 MS.gene053396:intron 15.0%
!!! ACAACTTTAATTTAATTTCA+TGG - chr1.4:27387986-27388005 MS.gene053396:intron 15.0%
!!! ATTTTTAAGAATGAAATGTT+TGG + chr1.4:27387677-27387696 None:intergenic 15.0%
!!! CACTTTAGTATATTTTATTA+CGG + chr1.4:27387762-27387781 None:intergenic 15.0%
!!! TAATCTTAAGATTATTTTCA+AGG - chr1.4:27389126-27389145 MS.gene053396:intron 15.0%
!! AAAAAAGTGATTTCTTTGAA+TGG - chr1.4:27387710-27387729 MS.gene053396:intron 20.0%
!! ATAATACACCAAATATAGTA+AGG + chr1.4:27388137-27388156 None:intergenic 20.0%
!! ATCTATAAAATTGATATGGA+AGG + chr1.4:27389169-27389188 None:intergenic 20.0%
!! ATTACTAAACAAAAGTTCAA+GGG + chr1.4:27388554-27388573 None:intergenic 20.0%
!! CTATACGAATAGATTAAATA+TGG - chr1.4:27387078-27387097 MS.gene053396:CDS 20.0%
!! TAATACACCAAATATAGTAA+GGG + chr1.4:27388136-27388155 None:intergenic 20.0%
!! TATTACTAAACAAAAGTTCA+AGG + chr1.4:27388555-27388574 None:intergenic 20.0%
!! TCTATAGAAATGTTAGAAAT+TGG - chr1.4:27387613-27387632 MS.gene053396:intron 20.0%
!! TTAAGATTATGATCATGATT+AGG + chr1.4:27389115-27389134 None:intergenic 20.0%
!! TTAGAACATTAATTAGTGTA+TGG + chr1.4:27388694-27388713 None:intergenic 20.0%
!!! AATTTTATAGATTTAAGGCT+GGG - chr1.4:27389177-27389196 MS.gene053396:intron 20.0%
!!! CTATATTCTCTTATGTTTTT+TGG - chr1.4:27388767-27388786 MS.gene053396:intron 20.0%
!!! CTTTTTTACAAAAAATTGAG+AGG + chr1.4:27387736-27387755 None:intergenic 20.0%
!!! GCATATAATTTTCAATTTTG+CGG - chr1.4:27389587-27389606 MS.gene053396:CDS 20.0%
!!! GTGCAGTTAATTATTTTTTT+GGG + chr1.4:27389390-27389409 None:intergenic 20.0%
!!! TAACAAATGTGTTTTTGTTT+TGG - chr1.4:27388631-27388650 MS.gene053396:intron 20.0%
!!! TCTTTTACATATTGAATTTG+AGG - chr1.4:27388583-27388602 MS.gene053396:intron 20.0%
!!! TTTTTTATTTTGAAAGAGGA+AGG + chr1.4:27389312-27389331 None:intergenic 20.0%
! AAAATGACCCTTACTATATT+TGG - chr1.4:27388126-27388145 MS.gene053396:CDS 25.0%
! AGATTAGGACACATTATATT+AGG - chr1.4:27387234-27387253 MS.gene053396:CDS 25.0%
! ATTCACAATTAAAGCATACA+TGG - chr1.4:27387808-27387827 MS.gene053396:intron 25.0%
! ATTCTTATGTAAGGAATAGT+TGG + chr1.4:27389289-27389308 None:intergenic 25.0%
! GAATATTGATAAGACTTTGA+AGG - chr1.4:27387268-27387287 MS.gene053396:intron 25.0%
! TGCAACTCAATTGAAATTAT+CGG - chr1.4:27389950-27389969 MS.gene053396:intron 25.0%
! TTCTTATGTAAGGAATAGTT+GGG + chr1.4:27389288-27389307 None:intergenic 25.0%
! TTGAATAAATTGTGCATGTT+GGG - chr1.4:27389674-27389693 MS.gene053396:CDS 25.0%
! TTGGAGTAAATGATTCAATT+CGG - chr1.4:27388372-27388391 MS.gene053396:intron 25.0%
!! ATAATTTTCAATTTTGCGGA+TGG - chr1.4:27389591-27389610 MS.gene053396:CDS 25.0%
!! TAAGAATGATATTGGTTGTA+AGG - chr1.4:27387533-27387552 MS.gene053396:intron 25.0%
!! TCTATAGAAGCTTTAATCAA+TGG + chr1.4:27387601-27387620 None:intergenic 25.0%
!!! AAAGTTGGATTTTTTTGATC+TGG - chr1.4:27387204-27387223 MS.gene053396:CDS 25.0%
!!! AAATGTGTTTTTGTTTTGGT+TGG - chr1.4:27388635-27388654 MS.gene053396:intron 25.0%
!!! AAGTTGGATTTTTTTGATCT+GGG - chr1.4:27387205-27387224 MS.gene053396:CDS 25.0%
!!! CAATTTTATAGATTTAAGGC+TGG - chr1.4:27389176-27389195 MS.gene053396:intron 25.0%
!!! GATAATTATCATGGTTTTAC+TGG - chr1.4:27387340-27387359 MS.gene053396:intron 25.0%
!!! GATTTTGATTTTGGTCTTTT+AGG - chr1.4:27387413-27387432 MS.gene053396:intron 25.0%
!!! GGTGCAGTTAATTATTTTTT+TGG + chr1.4:27389391-27389410 None:intergenic 25.0%
!!! GGTTAGTTTGATAATTATCA+TGG - chr1.4:27387331-27387350 MS.gene053396:intron 25.0%
!!! TACTTCACTGATTTTGATTT+TGG - chr1.4:27387404-27387423 MS.gene053396:intron 25.0%
!!! TCAAGTACTGATTGAATTTT+GGG - chr1.4:27387146-27387165 MS.gene053396:CDS 25.0%
AAATGAGTGAACAACAGAAA+GGG + chr1.4:27387902-27387921 None:intergenic 30.0%
AGTACATTCTTCAAAATGGA+TGG + chr1.4:27387504-27387523 None:intergenic 30.0%
ATGAATGATTGAAGTCCTTA+AGG - chr1.4:27388658-27388677 MS.gene053396:intron 30.0%
ATTAGCACTATAAGCTCAAT+TGG + chr1.4:27388499-27388518 None:intergenic 30.0%
CTCAAGTACATTCTTCAAAA+TGG + chr1.4:27387508-27387527 None:intergenic 30.0%
GACAATGCATAAAATATGCA+AGG + chr1.4:27389448-27389467 None:intergenic 30.0%
GTTGAATAAATTGTGCATGT+TGG - chr1.4:27389673-27389692 MS.gene053396:CDS 30.0%
GTTTATTCTAAATGCAGAGT+GGG - chr1.4:27387873-27387892 MS.gene053396:intron 30.0%
TCACTTTGATCAATATTGTC+AGG - chr1.4:27387310-27387329 MS.gene053396:intron 30.0%
TCATGGCAATCTTGAAAAAT+GGG - chr1.4:27387563-27387582 MS.gene053396:intron 30.0%
TGTGAACACATTATGAAGTT+AGG - chr1.4:27387845-27387864 MS.gene053396:intron 30.0%
TGTTTATTCTAAATGCAGAG+TGG - chr1.4:27387872-27387891 MS.gene053396:intron 30.0%
TTATTCAACATTCCTGTGAA+AGG + chr1.4:27389662-27389681 None:intergenic 30.0%
! GAACTTCTAATCAAGAGTAT+TGG - chr1.4:27388060-27388079 MS.gene053396:intron 30.0%
! GATAATTTCAATTGAGTTGC+AGG + chr1.4:27389951-27389970 None:intergenic 30.0%
! TAATTAACTGCACCTCTTTT+TGG - chr1.4:27389397-27389416 MS.gene053396:intron 30.0%
! TTACTGAATTTTGTTCTCAC+AGG - chr1.4:27388016-27388035 MS.gene053396:intron 30.0%
!! AAGATTATTTTCAAGGGCAA+GGG - chr1.4:27389133-27389152 MS.gene053396:intron 30.0%
!! CATTTTGAAGAATGTACTTG+AGG - chr1.4:27387506-27387525 MS.gene053396:intron 30.0%
!! GATTTGTGGTTTTTGAAAGT+TGG - chr1.4:27387189-27387208 MS.gene053396:CDS 30.0%
!! TAAGATTATTTTCAAGGGCA+AGG - chr1.4:27389132-27389151 MS.gene053396:intron 30.0%
!! TATGCGAACTTTAAAACAGA+CGG + chr1.4:27388721-27388740 None:intergenic 30.0%
!! TTGTAACTAGCTTTCAATTC+AGG - chr1.4:27388181-27388200 MS.gene053396:CDS 30.0%
!!! CAAGTACTGATTGAATTTTG+GGG - chr1.4:27387147-27387166 MS.gene053396:CDS 30.0%
!!! GTCAAGTACTGATTGAATTT+TGG - chr1.4:27387145-27387164 MS.gene053396:CDS 30.0%
!!! TATGTTTTTTGGACAGATCA+TGG - chr1.4:27388778-27388797 MS.gene053396:intron 30.0%
AATACTCGACATTGTTGTAG+AGG + chr1.4:27389511-27389530 None:intergenic 35.0%
ACAAGAATCCTTCCAATAGT+AGG - chr1.4:27389347-27389366 MS.gene053396:intron 35.0%
AGAGGAAGGATTCTTATGTA+AGG + chr1.4:27389298-27389317 None:intergenic 35.0%
AGTCATAAACTGTTTGTGCA+TGG - chr1.4:27388091-27388110 MS.gene053396:CDS 35.0%
ATATAAGGAGAAGATGGAGA+AGG - chr1.4:27389896-27389915 MS.gene053396:CDS 35.0%
ATTGGAAGGATTCTTGTCTA+GGG + chr1.4:27389344-27389363 None:intergenic 35.0%
CAAATGAGTGAACAACAGAA+AGG + chr1.4:27387903-27387922 None:intergenic 35.0%
CTCATGGCAATCTTGAAAAA+TGG - chr1.4:27387562-27387581 MS.gene053396:intron 35.0%
GAAGCATAAGAGCAAGTATA+TGG + chr1.4:27388529-27388548 None:intergenic 35.0%
GAGGAGGTTAAGAATGATAT+TGG - chr1.4:27387525-27387544 MS.gene053396:intron 35.0%
GCAAATGCACATGCAAATAT+AGG - chr1.4:27388223-27388242 MS.gene053396:CDS 35.0%
TATGGTGTACATGTTCCTTA+AGG + chr1.4:27388676-27388695 None:intergenic 35.0%
TATTGGAAGGATTCTTGTCT+AGG + chr1.4:27389345-27389364 None:intergenic 35.0%
TCCTAAAGAAAACTGTGAGA+AGG - chr1.4:27388802-27388821 MS.gene053396:intron 35.0%
TGCATAAAATATGCAAGGTC+CGG + chr1.4:27389443-27389462 None:intergenic 35.0%
TGTTGCAATTACTATCTCAG+TGG - chr1.4:27389565-27389584 MS.gene053396:intron 35.0%
TTTGAAGAATGTACTTGAGG+AGG - chr1.4:27387509-27387528 MS.gene053396:intron 35.0%
! AAATTATCGGCTGAATCAGT+TGG - chr1.4:27389963-27389982 MS.gene053396:intron 35.0%
! AATTATCGGCTGAATCAGTT+GGG - chr1.4:27389964-27389983 MS.gene053396:intron 35.0%
! ACCTTCTCACAGTTTTCTTT+AGG + chr1.4:27388806-27388825 None:intergenic 35.0%
! GTCGAGTATTGTCAACTATT+TGG - chr1.4:27389521-27389540 MS.gene053396:intron 35.0%
! TCTGTCCTTTTTCTTGTACT+AGG - chr1.4:27389247-27389266 MS.gene053396:intron 35.0%
!! AACTAGCTTTCAATTCAGGT+AGG - chr1.4:27388185-27388204 MS.gene053396:CDS 35.0%
!! ATGTTTGTTTTCTCTTGAGC+AGG - chr1.4:27389869-27389888 MS.gene053396:CDS 35.0%
!! ATTGAATTTTGGGGATCTGA+AGG - chr1.4:27387156-27387175 MS.gene053396:CDS 35.0%
!! GAATTGACTTGTGTTTGACT+TGG - chr1.4:27387123-27387142 MS.gene053396:CDS 35.0%
!! GTCTTTTAGGAACCTTATTC+TGG - chr1.4:27387426-27387445 MS.gene053396:intron 35.0%
!! TCTTTATGGTACTGGTGATA+TGG - chr1.4:27390004-27390023 MS.gene053396:intron 35.0%
!! TTGAATTTTGGGGATCTGAA+GGG - chr1.4:27387157-27387176 MS.gene053396:CDS 35.0%
!!! ATCATCCACTTTTTCATCTG+TGG + chr1.4:27388836-27388855 None:intergenic 35.0%
!!! CATTTTTCAAGATTGCCATG+AGG + chr1.4:27387564-27387583 None:intergenic 35.0%
!!! TTTTTTGGGTGTATACCCAT+AGG + chr1.4:27389376-27389395 None:intergenic 35.0%
AAGGTCCACAGATGAAAAAG+TGG - chr1.4:27388828-27388847 MS.gene053396:intron 40.0%
AATCAGTTGGGGAAAAGACT+CGG - chr1.4:27389976-27389995 MS.gene053396:intron 40.0%
ACGATCATAGAGAAGAAGGA+AGG - chr1.4:27388277-27388296 MS.gene053396:CDS 40.0%
AGATGAGATGAAATCGACGT+AGG - chr1.4:27388607-27388626 MS.gene053396:intron 40.0%
AGTATGCGCAGGAGAAAATT+CGG - chr1.4:27388323-27388342 MS.gene053396:CDS 40.0%
ATAGGTCTCCTACTATTGGA+AGG + chr1.4:27389358-27389377 None:intergenic 40.0%
CAAGACGATCATAGAGAAGA+AGG - chr1.4:27388273-27388292 MS.gene053396:CDS 40.0%
CAAGCGACTAAGAATCTACA+TGG - chr1.4:27388875-27388894 MS.gene053396:intron 40.0%
CATAAAATATGCAAGGTCCG+GGG + chr1.4:27389441-27389460 None:intergenic 40.0%
CGATCATAGAGAAGAAGGAA+GGG - chr1.4:27388278-27388297 MS.gene053396:CDS 40.0%
GAAAACTGTGAGAAGGTCAA+AGG - chr1.4:27388809-27388828 MS.gene053396:intron 40.0%
GATCATAGAGAAGAAGGAAG+GGG - chr1.4:27388279-27388298 MS.gene053396:CDS 40.0%
GCAGAAACATGGCTACTATA+TGG + chr1.4:27390083-27390102 None:intergenic 40.0%
GCATAAAATATGCAAGGTCC+GGG + chr1.4:27389442-27389461 None:intergenic 40.0%
TAGGAACCTTATTCTGGACT+TGG - chr1.4:27387432-27387451 MS.gene053396:intron 40.0%
TCCAATAGTAGGAGACCTAT+GGG - chr1.4:27389358-27389377 MS.gene053396:intron 40.0%
TCTTAGTTTCCACCTTTCAC+AGG - chr1.4:27389647-27389666 MS.gene053396:CDS 40.0%
TCTTGAAAAATGGGATGTGC+AGG - chr1.4:27387572-27387591 MS.gene053396:intron 40.0%
TGTTCACTCATTTGTGCAGA+TGG - chr1.4:27387909-27387928 MS.gene053396:intron 40.0%
TTCAACATTCCTGTGAAAGG+TGG + chr1.4:27389659-27389678 None:intergenic 40.0%
TTCCAATAGTAGGAGACCTA+TGG - chr1.4:27389357-27389376 MS.gene053396:intron 40.0%
! ATTATCGGCTGAATCAGTTG+GGG - chr1.4:27389965-27389984 MS.gene053396:intron 40.0%
! GGAAGCATATAAGGAGAAGA+TGG - chr1.4:27389890-27389909 MS.gene053396:CDS 40.0%
! TATAGTAGCCATGTTTCTGC+CGG - chr1.4:27390083-27390102 MS.gene053396:intron 40.0%
! TCTTGAGCAGGAAGCATATA+AGG - chr1.4:27389881-27389900 MS.gene053396:CDS 40.0%
!! AGTGACGGATTTCAGATTTG+TGG - chr1.4:27387778-27387797 MS.gene053396:intron 40.0%
!! ATCTGATAATGGAACCAAGG+AGG - chr1.4:27389920-27389939 MS.gene053396:intron 40.0%
!! ATGGAGAAGGCATCTGATAA+TGG - chr1.4:27389909-27389928 MS.gene053396:CDS 40.0%
!!! AAGGGTGTTTTGTGGATTTG+TGG - chr1.4:27387175-27387194 MS.gene053396:CDS 40.0%
ACCCATAGGTCTCCTACTAT+TGG + chr1.4:27389362-27389381 None:intergenic 45.0%
AGCAATGGGGCTATCATTCT+CGG - chr1.4:27387458-27387477 MS.gene053396:intron 45.0%
ATCAGTTGGGGAAAAGACTC+GGG - chr1.4:27389977-27389996 MS.gene053396:intron 45.0%
ATGGAGATACATGCGATTGC+TGG + chr1.4:27390064-27390083 None:intergenic 45.0%
CTATCATTCTCGGTTCCTCA+GGG - chr1.4:27387468-27387487 MS.gene053396:intron 45.0%
GAGCGCCTAGTACAAGAAAA+AGG + chr1.4:27389255-27389274 None:intergenic 45.0%
GCTTCACCAAGTCCAGAATA+AGG + chr1.4:27387441-27387460 None:intergenic 45.0%
GCTTTACCTAGTGAAACACC+TGG + chr1.4:27389091-27389110 None:intergenic 45.0%
GGTTGTAAGGTTCTACCTCA+TGG - chr1.4:27387546-27387565 MS.gene053396:intron 45.0%
TGGAGATACATGCGATTGCT+GGG + chr1.4:27390063-27390082 None:intergenic 45.0%
TTGGATCCAGGTGTTTCACT+AGG - chr1.4:27389082-27389101 MS.gene053396:intron 45.0%
! ATACAGGGCATCTGGATGTA+GGG - chr1.4:27389011-27389030 MS.gene053396:intron 45.0%
! ATAGTAGCCATGTTTCTGCC+GGG - chr1.4:27390084-27390103 MS.gene053396:intron 45.0%
! TGATCTGGGTGTTGCAGATT+AGG - chr1.4:27387219-27387238 MS.gene053396:CDS 45.0%
!! ACTGCACCTCTTTTTGGTAG+TGG - chr1.4:27389403-27389422 MS.gene053396:intron 45.0%
!! GGCATCTGATAATGGAACCA+AGG - chr1.4:27389917-27389936 MS.gene053396:CDS 45.0%
!! TCTGGACTTGGTGAAGCAAT+GGG - chr1.4:27387444-27387463 MS.gene053396:intron 45.0%
!! TTCTGGACTTGGTGAAGCAA+TGG - chr1.4:27387443-27387462 MS.gene053396:intron 45.0%
AAGACTCGGGGACGTCTTTA+TGG - chr1.4:27389990-27390009 MS.gene053396:intron 50.0%
ACGCAGACCAGCTGAATGAA+GGG - chr1.4:27388951-27388970 MS.gene053396:intron 50.0%
AGTTGCAGGATCAACCTCCT+TGG + chr1.4:27389937-27389956 None:intergenic 50.0%
ATACATGCGATTGCTGGGTC+AGG + chr1.4:27390058-27390077 None:intergenic 50.0%
GATGGAAATCTGACTCCCTG+AGG + chr1.4:27387486-27387505 None:intergenic 50.0%
GATGTGGGAATAGTATGCGC+AGG - chr1.4:27388312-27388331 MS.gene053396:CDS 50.0%
GCATCTAGATGCAGTGCAGT+TGG - chr1.4:27389063-27389082 MS.gene053396:intron 50.0%
GCTATCATTCTCGGTTCCTC+AGG - chr1.4:27387467-27387486 MS.gene053396:intron 50.0%
GTAGAGAGCAAATGCAGCAG+AGG - chr1.4:27390131-27390150 MS.gene053396:intron 50.0%
GTTGTAGCGTCATCACTGAG+AGG + chr1.4:27388917-27388936 None:intergenic 50.0%
TACATGCGATTGCTGGGTCA+GGG + chr1.4:27390057-27390076 None:intergenic 50.0%
TCAGTTGGGGAAAAGACTCG+GGG - chr1.4:27389978-27389997 MS.gene053396:intron 50.0%
TGAGCTTAGCTCAGCTGGTT+GGG + chr1.4:27389470-27389489 None:intergenic 50.0%
TTCCATCTGTGCAGCAATCC+CGG + chr1.4:27390105-27390124 None:intergenic 50.0%
! AAGGGGTCGTGTTTCTGATG+TGG - chr1.4:27388296-27388315 MS.gene053396:CDS 50.0%
! AGGGGTCGTGTTTCTGATGT+GGG - chr1.4:27388297-27388316 MS.gene053396:CDS 50.0%
! GATACAGGGCATCTGGATGT+AGG - chr1.4:27389010-27389029 MS.gene053396:intron 50.0%
! GTGATGACGCTACAACACCA+TGG - chr1.4:27388921-27388940 MS.gene053396:intron 50.0%
!! CTGGACTTGGTGAAGCAATG+GGG - chr1.4:27387445-27387464 MS.gene053396:intron 50.0%
!!! ACCTCTTTTTGGTAGTGGCC+GGG - chr1.4:27389408-27389427 MS.gene053396:intron 50.0%
!!! CACCTCTTTTTGGTAGTGGC+CGG - chr1.4:27389407-27389426 MS.gene053396:intron 50.0%
!!! GGGATCTGAAGGGTGTTTTG+TGG - chr1.4:27387167-27387186 MS.gene053396:CDS 50.0%
AATGAAGGGGAGTCGGATGC+AGG - chr1.4:27388965-27388984 MS.gene053396:intron 55.0%
ACGCTACAACACCATGGCAG+AGG - chr1.4:27388927-27388946 MS.gene053396:intron 55.0%
ATGAAGGGGAGTCGGATGCA+GGG - chr1.4:27388966-27388985 MS.gene053396:intron 55.0%
ATGCACGGCAGTCGGATACA+GGG - chr1.4:27389041-27389060 MS.gene053396:intron 55.0%
ATGCAGGGCAGCTGGATACA+GGG - chr1.4:27388996-27389015 MS.gene053396:intron 55.0%
ATGCAGGGGAGCAAGATGCA+GGG - chr1.4:27388981-27389000 MS.gene053396:intron 55.0%
CAGCAATCCCGGCAGAAACA+TGG + chr1.4:27390094-27390113 None:intergenic 55.0%
CCAGCTGAATGAAGGGGAGT+CGG - chr1.4:27388958-27388977 MS.gene053396:intron 55.0%
CGCAGACCAGCTGAATGAAG+GGG - chr1.4:27388952-27388971 MS.gene053396:intron 55.0%
CGCTACAACACCATGGCAGA+GGG - chr1.4:27388928-27388947 MS.gene053396:intron 55.0%
CGGGGACGTCTTTATGGTAC+TGG - chr1.4:27389996-27390015 MS.gene053396:intron 55.0%
GACGCAGACCAGCTGAATGA+AGG - chr1.4:27388950-27388969 MS.gene053396:intron 55.0%
GATGCAGTGCAGTTGGATCC+AGG - chr1.4:27389070-27389089 MS.gene053396:intron 55.0%
GTGAGCTTAGCTCAGCTGGT+TGG + chr1.4:27389471-27389490 None:intergenic 55.0%
!! ATGGTAAAGCGCTGCAAGCC+AGG - chr1.4:27390023-27390042 MS.gene053396:intron 55.0%
!!! CCTCTTTTTGGTAGTGGCCG+GGG - chr1.4:27389409-27389428 MS.gene053396:intron 55.0%
AAGGTCCGGGGTTCAAACCC+CGG + chr1.4:27389429-27389448 None:intergenic 60.0%
ATGCGATTGCTGGGTCAGGG+AGG + chr1.4:27390054-27390073 None:intergenic 60.0%
ATGTAGGGCAGCCGGATGCA+CGG - chr1.4:27389026-27389045 MS.gene053396:intron 60.0%
CCAGCTGAGCTAAGCTCACG+AGG - chr1.4:27389472-27389491 MS.gene053396:intron 60.0%
CCCCGGCCACTACCAAAAAG+AGG + chr1.4:27389412-27389431 None:intergenic 60.0%
CCGACTCCCCTTCATTCAGC+TGG + chr1.4:27388961-27388980 None:intergenic 60.0%
CCTCGTGAGCTTAGCTCAGC+TGG + chr1.4:27389475-27389494 None:intergenic 60.0%
GATGCACGGCAGTCGGATAC+AGG - chr1.4:27389040-27389059 MS.gene053396:intron 60.0%
GATGCAGGGCAGCTGGATAC+AGG - chr1.4:27388995-27389014 MS.gene053396:intron 60.0%
GATGCAGGGGAGCAAGATGC+AGG - chr1.4:27388980-27388999 MS.gene053396:intron 60.0%
GCATCTGGATGTAGGGCAGC+CGG - chr1.4:27389018-27389037 MS.gene053396:intron 60.0%
GTATCCGACTGCCGTGCATC+CGG + chr1.4:27389040-27389059 None:intergenic 60.0%
TGAAGGGGAGTCGGATGCAG+GGG - chr1.4:27388967-27388986 MS.gene053396:intron 60.0%
TGCCGGGATTGCTGCACAGA+TGG - chr1.4:27390100-27390119 MS.gene053396:intron 60.0%
TGGGTCAGGGAGGATACACC+TGG + chr1.4:27390044-27390063 None:intergenic 60.0%
! GCAGCTGGATACAGGGCATC+TGG - chr1.4:27389003-27389022 MS.gene053396:intron 60.0%
AGTGGCCGGGGTTTGAACCC+CGG - chr1.4:27389421-27389440 MS.gene053396:intron 65.0%
GGAGCAAGATGCAGGGCAGC+TGG - chr1.4:27388988-27389007 MS.gene053396:intron 65.0%
TGGTCTGCGTCCCTCTGCCA+TGG + chr1.4:27388941-27388960 None:intergenic 65.0%
GCAGCCGGATGCACGGCAGT+CGG - chr1.4:27389033-27389052 MS.gene053396:intron 70.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 27387015 27390157 27387015 ID=MS.gene053396
chr1.4 mRNA 27387015 27390157 27387015 ID=MS.gene053396.t1;Parent=MS.gene053396
chr1.4 exon 27390140 27390157 27390140 ID=MS.gene053396.t1.exon1;Parent=MS.gene053396.t1
chr1.4 CDS 27390140 27390157 27390140 ID=cds.MS.gene053396.t1;Parent=MS.gene053396.t1
chr1.4 exon 27389841 27389936 27389841 ID=MS.gene053396.t1.exon2;Parent=MS.gene053396.t1
chr1.4 CDS 27389841 27389936 27389841 ID=cds.MS.gene053396.t1;Parent=MS.gene053396.t1
chr1.4 exon 27389579 27389737 27389579 ID=MS.gene053396.t1.exon3;Parent=MS.gene053396.t1
chr1.4 CDS 27389579 27389737 27389579 ID=cds.MS.gene053396.t1;Parent=MS.gene053396.t1
chr1.4 exon 27388069 27388378 27388069 ID=MS.gene053396.t1.exon4;Parent=MS.gene053396.t1
chr1.4 CDS 27388069 27388378 27388069 ID=cds.MS.gene053396.t1;Parent=MS.gene053396.t1
chr1.4 exon 27387371 27387375 27387371 ID=MS.gene053396.t1.exon5;Parent=MS.gene053396.t1
chr1.4 CDS 27387371 27387375 27387371 ID=cds.MS.gene053396.t1;Parent=MS.gene053396.t1
chr1.4 exon 27387015 27387281 27387015 ID=MS.gene053396.t1.exon6;Parent=MS.gene053396.t1
chr1.4 CDS 27387015 27387281 27387015 ID=cds.MS.gene053396.t1;Parent=MS.gene053396.t1
Gene Sequence

>MS.gene053396

ATGATTCAAATTGTTCTTGTATATAAGTCATTATCATGACAAACACTTGTCAATAAGCTGTTTCTATACGAATAGATTAAATATGGTTAAATTGTTTCTATACGAATTGAATTGACTTGTGTTTGACTTGGTCAAGTACTGATTGAATTTTGGGGATCTGAAGGGTGTTTTGTGGATTTGTGGTTTTTGAAAGTTGGATTTTTTTGATCTGGGTGTTGCAGATTAGGACACATTATATTAGGAAAGCTCATGAGAATATTGATAAGACTTTGAAGGCTTCTGAGATTATATTGTCTCACTTTGATCAATATTGTCAGGTTAGTTTGATAATTATCATGGTTTTACTGGTTTTTACGCTGATTTATGCTATATATTGTCTCTCTTTCTTTTACTTCACTGATTTTGATTTTGGTCTTTTAGGAACCTTATTCTGGACTTGGTGAAGCAATGGGGCTATCATTCTCGGTTCCTCAGGGAGTCAGATTTCCATCCATTTTGAAGAATGTACTTGAGGAGGTTAAGAATGATATTGGTTGTAAGGTTCTACCTCATGGCAATCTTGAAAAATGGGATGTGCAGGTAACCATTGATTAAAGCTTCTATAGAAATGTTAGAAATTGGTTATTTTGACATTGTGATCATTCTTTAAAGAATCTTGTCCAAACATTTCATTCTTAAAAATATTTATTTTATGCAAAAAAGTGATTTCTTTGAATGGCCTCTCAATTTTTTGTAAAAAAGAATCCGTAATAAAATATACTAAAGTGACGGATTTCAGATTTGTGGACTAGTCATTCACAATTAAAGCATACATGGTTAGTGAAAGCATTTGTGAACACATTATGAAGTTAGGAAATTGTTTATTCTAAATGCAGAGTGGGTTTCCCTTTCTGTTGTTCACTCATTTGTGCAGATGGTTTAACATGTGACTTTAAGTAGTAAATTTTGTTTTTCAAAAATATTCTCTGACCACAACTTTAATTTAATTTCATGGAGCTCTCTTACTGAATTTTGTTCTCACAGGTTAGATATTTTACATTTCTGTGAACTTCTAATCAAGAGTATTGGTGACTTAAAGTCATAAACTGTTTGTGCATGGTGATCTTGTATGAAAATGACCCTTACTATATTTGGTGTATTATGTTAGTATACTAGTATTTTGTAAGTTGTAACTAGCTTTCAATTCAGGTAGGATATATGAAGATAATGCAAATGCACATGCAAATATAGGCTACGAACAATTCACAAATGCTGTTATCAAGACGATCATAGAGAAGAAGGAAGGGGTCGTGTTTCTGATGTGGGAATAGTATGCGCAGGAGAAAATTCGGTACTGCCATTAGATGATTCTATAAATTTGGAGTAAATGATTCAATTCGGTATGAAATCACATAGTGATGACGAAGATAGTGATTCGTTTTGAAGTGAAAATTTTATATTCAATTGAATGTTAAATTTGAATTTAAATCTACAATGATTATCCAATTGAGCTTATAGTGCTAATTTATATACCATATACTTGCTCTTATGCTTCAGCCCTTGAACTTTTGTTTAGTAATAAATATATCTCTTTTACATATTGAATTTGAGGAAGATGAGATGAAATCGACGTAGGTTAACAAATGTGTTTTTGTTTTGGTTGGATGAATGATTGAAGTCCTTAAGGAACATGTACACCATACACTAATTAATGTTCTAAAATACCGTCTGTTTTAAAGTTCGCATATATTTTTTGTTGTTTCTCATTATCAACTATATTCTCTTATGTTTTTTGGACAGATCATGGCTCCTAAAGAAAACTGTGAGAAGGTCAAAGGTCCACAGATGAAAAAGTGGATGATTATGCTGCATAAGTTGAAACAAGCGACTAAGAATCTACATGGATTAGCTTCGAAGTCGCCTCTCAGTGATGACGCTACAACACCATGGCAGAGGGACGCAGACCAGCTGAATGAAGGGGAGTCGGATGCAGGGGAGCAAGATGCAGGGCAGCTGGATACAGGGCATCTGGATGTAGGGCAGCCGGATGCACGGCAGTCGGATACAGGGCATCTAGATGCAGTGCAGTTGGATCCAGGTGTTTCACTAGGTAAAGCACCTAATCATGATCATAATCTTAAGATTATTTTCAAGGGCAAGGGCTCAAAGCAGCCTTCCATATCAATTTTATAGATTTAAGGCTGGGTGTAGATTTGTTGCTCAAAAATATATGTTTTTGTTCTTAGATTATAGTCTGTCCTTTTTCTTGTACTAGGCGCTCACATATAATGCCCAACTATTCCTTACATAAGAATCCTTCCTCTTTCAAAATAAAAAATTTAAAAATCCCTAGACAAGAATCCTTCCAATAGTAGGAGACCTATGGGTATACACCCAAAAAAATAATTAACTGCACCTCTTTTTGGTAGTGGCCGGGGTTTGAACCCCGGACCTTGCATATTTTATGCATTGTCCCAACCAGCTGAGCTAAGCTCACGAGGACAATTAACTGCACCTCTACAACAATGTCGAGTATTGTCAACTATTTGGTGTTACTTCTATGTGAACTAATGTTGCAATTACTATCTCAGTGGCATATAATTTTCAATTTTGCGGATGGAAGTTGCTTTCTTTATTGAATCAGATTGCAGACTCTTAGTTTCCACCTTTCACAGGAATGTTGAATAAATTGTGCATGTTGGGTATCTTATTTGATTACACTATATTATTATTTGTTCAAATAATAATTAATTTTGTTTATTTAAAGTTTTTTTTTGTATGTATGCTCTAGTCATCATATAAGAATGTGTATGTTTGTATGCTTTTGATTGCTAAGTAATTTCATACATCGTGTGACAGCTTAAATGTAATATGTATGTTTGTTTTCTCTTGAGCAGGAAGCATATAAGGAGAAGATGGAGAAGGCATCTGATAATGGAACCAAGGAGGTTGATCCTGCAACTCAATTGAAATTATCGGCTGAATCAGTTGGGGAAAAGACTCGGGGACGTCTTTATGGTACTGGTGATATGGTAAAGCGCTGCAAGCCAGGTGTATCCTCCCTGACCCAGCAATCGCATGTATCTCCATATAGTAGCCATGTTTCTGCCGGGATTGCTGCACAGATGGAAGCAATTGTAGAGAGCAAATGCAGCAGAGGATGA

Protein sequence

>MS.gene053396.t1

MIQIVLIRTHYIRKAHENIDKTLKASEIILSHFDQYCQEPYSGLGEAMGLSFSVPQGVRFPSILKNVLEEVKNDIGCKVLPHGNLEKWDVQIMAPKENCEKVKGPQMKKWMIMLHKLKQATKNLHGLASKSPLSDDATTPWQRDADQLNEGESDAGEQDAGQLDTGHLDVGQPDARQSDTGHLDAVQLDPGVSLECEAYKEKMEKASDNGTKEVDPATQLKLSAESVGEKTRGRLYGTGDMVKRCKPGVSSLTQQSHVSPYSSHVSAGIAAQMEAIVESKCSRG