Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65947.t1 | XP_003590037.1 | 80.7 | 533 | 7 | 1 | 1 | 437 | 1 | 533 | 1.40E-233 | 818.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65947.t1 | O48639 | 66.1 | 516 | 77 | 3 | 4 | 423 | 5 | 518 | 3.8e-182 | 639.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65947.t1 | A5H2U5 | 80.7 | 533 | 7 | 1 | 1 | 437 | 1 | 533 | 1.0e-233 | 818.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051127 | MS.gene65947 | 0.803246 | 3.82E-49 | -1.69E-46 |
| MS.gene053402 | MS.gene65947 | 0.834619 | 2.70E-56 | -1.69E-46 |
| MS.gene059022 | MS.gene65947 | -0.807218 | 5.63E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65947.t1 | MTR_1g043200 | 97.661 | 342 | 8 | 0 | 96 | 437 | 192 | 533 | 0.0 | 694 |
| MS.gene65947.t1 | MTR_1g043200 | 98.990 | 99 | 1 | 0 | 1 | 99 | 1 | 99 | 6.50e-60 | 204 |
| MS.gene65947.t1 | MTR_1g043220 | 96.460 | 339 | 12 | 0 | 96 | 434 | 192 | 530 | 0.0 | 680 |
| MS.gene65947.t1 | MTR_1g043220 | 96.970 | 99 | 3 | 0 | 1 | 99 | 1 | 99 | 8.08e-59 | 201 |
| MS.gene65947.t1 | MTR_1g043290 | 95.906 | 342 | 14 | 0 | 96 | 437 | 192 | 533 | 0.0 | 649 |
| MS.gene65947.t1 | MTR_1g043290 | 96.970 | 99 | 3 | 0 | 1 | 99 | 1 | 99 | 7.86e-59 | 201 |
| MS.gene65947.t1 | MTR_1g074930 | 79.063 | 363 | 75 | 1 | 70 | 431 | 165 | 527 | 0.0 | 598 |
| MS.gene65947.t1 | MTR_1g074930 | 86.869 | 99 | 13 | 0 | 1 | 99 | 1 | 99 | 5.29e-52 | 183 |
| MS.gene65947.t1 | MTR_3g082700 | 76.730 | 318 | 73 | 1 | 98 | 415 | 195 | 511 | 0.0 | 526 |
| MS.gene65947.t1 | MTR_3g082700 | 82.292 | 96 | 17 | 0 | 4 | 99 | 5 | 100 | 1.09e-45 | 166 |
| MS.gene65947.t1 | MTR_1g069935 | 69.972 | 363 | 104 | 3 | 70 | 431 | 166 | 524 | 1.01e-180 | 514 |
| MS.gene65947.t1 | MTR_1g069935 | 81.250 | 96 | 18 | 0 | 4 | 99 | 5 | 100 | 3.33e-44 | 162 |
| MS.gene65947.t1 | MTR_7g096880 | 76.266 | 316 | 69 | 2 | 100 | 415 | 197 | 506 | 1.84e-178 | 509 |
| MS.gene65947.t1 | MTR_7g096880 | 79.167 | 96 | 20 | 0 | 4 | 99 | 5 | 100 | 1.19e-43 | 160 |
| MS.gene65947.t1 | MTR_7g096870 | 75.455 | 330 | 77 | 2 | 96 | 425 | 193 | 518 | 2.79e-174 | 499 |
| MS.gene65947.t1 | MTR_7g096870 | 79.167 | 96 | 20 | 0 | 4 | 99 | 5 | 100 | 3.47e-44 | 162 |
| MS.gene65947.t1 | MTR_1g074940 | 73.981 | 319 | 66 | 3 | 100 | 415 | 196 | 500 | 3.11e-169 | 485 |
| MS.gene65947.t1 | MTR_1g074940 | 77.083 | 96 | 21 | 1 | 4 | 99 | 5 | 99 | 1.54e-41 | 154 |
| MS.gene65947.t1 | MTR_1g069930 | 62.890 | 353 | 127 | 3 | 70 | 421 | 166 | 515 | 2.64e-156 | 453 |
| MS.gene65947.t1 | MTR_1g069930 | 70.833 | 96 | 28 | 0 | 4 | 99 | 5 | 100 | 4.56e-38 | 145 |
| MS.gene65947.t1 | MTR_1g028600 | 55.015 | 329 | 134 | 4 | 98 | 426 | 192 | 506 | 9.18e-116 | 349 |
| MS.gene65947.t1 | MTR_1g028600 | 75.789 | 95 | 23 | 0 | 5 | 99 | 3 | 97 | 1.41e-40 | 152 |
| MS.gene65947.t1 | MTR_5g068140 | 50.708 | 353 | 148 | 5 | 100 | 436 | 196 | 538 | 2.13e-111 | 339 |
| MS.gene65947.t1 | MTR_5g068140 | 70.707 | 99 | 29 | 0 | 1 | 99 | 1 | 99 | 8.69e-40 | 150 |
| MS.gene65947.t1 | MTR_4g083960 | 53.030 | 330 | 141 | 8 | 105 | 428 | 193 | 514 | 3.73e-111 | 337 |
| MS.gene65947.t1 | MTR_4g083960 | 57.576 | 99 | 40 | 1 | 1 | 99 | 1 | 97 | 1.14e-22 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65947.t1 | AT5G43360 | 76.338 | 355 | 81 | 3 | 70 | 423 | 166 | 518 | 0.0 | 540 |
| MS.gene65947.t1 | AT5G43360 | 82.292 | 96 | 17 | 0 | 4 | 99 | 5 | 100 | 2.35e-46 | 167 |
| MS.gene65947.t1 | AT3G54700 | 80.247 | 324 | 59 | 2 | 100 | 423 | 197 | 515 | 0.0 | 535 |
| MS.gene65947.t1 | AT3G54700 | 81.250 | 96 | 18 | 0 | 4 | 99 | 5 | 100 | 7.42e-45 | 164 |
| MS.gene65947.t1 | AT3G54700 | 80.247 | 324 | 59 | 2 | 100 | 423 | 197 | 515 | 0.0 | 535 |
| MS.gene65947.t1 | AT3G54700 | 81.250 | 96 | 18 | 0 | 4 | 99 | 5 | 100 | 7.42e-45 | 164 |
| MS.gene65947.t1 | AT5G43350 | 74.648 | 355 | 87 | 3 | 70 | 423 | 166 | 518 | 0.0 | 531 |
| MS.gene65947.t1 | AT5G43350 | 82.292 | 96 | 17 | 0 | 4 | 99 | 5 | 100 | 1.78e-46 | 168 |
| MS.gene65947.t1 | AT2G38940 | 76.947 | 321 | 73 | 1 | 100 | 420 | 197 | 516 | 0.0 | 522 |
| MS.gene65947.t1 | AT2G38940 | 81.250 | 96 | 18 | 0 | 4 | 99 | 5 | 100 | 1.65e-44 | 163 |
| MS.gene65947.t1 | AT2G32830 | 73.333 | 330 | 86 | 2 | 98 | 426 | 195 | 523 | 1.50e-180 | 515 |
| MS.gene65947.t1 | AT2G32830 | 81.720 | 93 | 17 | 0 | 7 | 99 | 8 | 100 | 1.40e-42 | 157 |
| MS.gene65947.t1 | AT5G43370 | 74.085 | 355 | 89 | 3 | 70 | 423 | 166 | 518 | 3.47e-174 | 498 |
| MS.gene65947.t1 | AT5G43370 | 82.292 | 96 | 17 | 0 | 4 | 99 | 5 | 100 | 2.23e-46 | 167 |
| MS.gene65947.t1 | AT5G43370 | 74.085 | 355 | 89 | 3 | 70 | 423 | 166 | 518 | 3.47e-174 | 498 |
| MS.gene65947.t1 | AT5G43370 | 82.292 | 96 | 17 | 0 | 4 | 99 | 5 | 100 | 2.23e-46 | 167 |
| MS.gene65947.t1 | AT5G43340 | 64.706 | 323 | 96 | 3 | 108 | 428 | 205 | 511 | 2.44e-148 | 432 |
| MS.gene65947.t1 | AT5G43340 | 66.667 | 93 | 31 | 0 | 7 | 99 | 9 | 101 | 3.52e-35 | 137 |
| MS.gene65947.t1 | AT1G76430 | 48.328 | 329 | 152 | 9 | 109 | 430 | 201 | 518 | 7.14e-98 | 303 |
| MS.gene65947.t1 | AT1G76430 | 47.917 | 96 | 44 | 1 | 4 | 99 | 3 | 92 | 2.75e-22 | 99.8 |
| MS.gene65947.t1 | AT1G20860 | 49.221 | 321 | 157 | 5 | 116 | 431 | 200 | 519 | 4.66e-96 | 298 |
| MS.gene65947.t1 | AT1G20860 | 48.421 | 95 | 43 | 1 | 5 | 99 | 3 | 91 | 3.62e-22 | 99.4 |
| MS.gene65947.t1 | AT1G20860 | 49.221 | 321 | 157 | 5 | 116 | 431 | 252 | 571 | 1.21e-95 | 299 |
| MS.gene65947.t1 | AT1G20860 | 48.421 | 95 | 43 | 1 | 5 | 99 | 55 | 143 | 3.16e-22 | 99.8 |
| MS.gene65947.t1 | AT4G08895 | 55.714 | 140 | 30 | 1 | 225 | 364 | 23 | 130 | 1.25e-47 | 160 |
| MS.gene65947.t1 | AT4G08878 | 59.091 | 88 | 34 | 1 | 107 | 194 | 185 | 270 | 7.30e-25 | 103 |
| MS.gene65947.t1 | AT4G08878 | 65.714 | 70 | 24 | 0 | 30 | 99 | 13 | 82 | 2.86e-24 | 102 |
Find 99 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATTCTTCTTTGCTAATTT+TGG | 0.173620 | 1.1:-27021332 | MS.gene65947:CDS |
| GCAGTACTGTTCCTGGTTAC+TGG | 0.198938 | 1.1:-27021508 | MS.gene65947:CDS |
| GCCGTGTAACGAGCTGTTTC+TGG | 0.242717 | 1.1:+27021860 | None:intergenic |
| AATTATTCTTTGGTTGGCTT+GGG | 0.264750 | 1.1:-27022318 | MS.gene65947:CDS |
| TGGTTGGCTTGGGGACAAAA+TGG | 0.266103 | 1.1:-27022308 | MS.gene65947:CDS |
| CGACATGGTTGGGCTTTGTT+TGG | 0.280959 | 1.1:-27021692 | MS.gene65947:CDS |
| GGAGCAATTGTTGGTGCATT+TGG | 0.287811 | 1.1:-27021215 | MS.gene65947:CDS |
| GATCCTACCAAGACCGATAA+AGG | 0.287833 | 1.1:-27021167 | MS.gene65947:CDS |
| TGCCTCAATTTGATTATGTT+TGG | 0.291088 | 1.1:-27021946 | MS.gene65947:CDS |
| CTAGCAGGCCAATTATTCTT+TGG | 0.295996 | 1.1:-27022328 | MS.gene65947:CDS |
| CAAGCCAACCAAAGAATAAT+TGG | 0.296172 | 1.1:+27022320 | None:intergenic |
| ACACTTGGTGGAAGTGTTCC+TGG | 0.300768 | 1.1:+27022388 | None:intergenic |
| AGTAAGAAAGATAACAGAAT+TGG | 0.306707 | 1.1:-27021377 | MS.gene65947:CDS |
| TCAGTCATGTCTGGAGAATT+AGG | 0.311053 | 1.1:-27022574 | None:intergenic |
| CAATTATTCTTTGGTTGGCT+TGG | 0.312479 | 1.1:-27022319 | MS.gene65947:CDS |
| TCCCTTGTCACAAAGTTGTT+AGG | 0.314005 | 1.1:-27022445 | MS.gene65947:CDS |
| ACAACAAATGTTGTAGCATT+TGG | 0.334728 | 1.1:+27021308 | None:intergenic |
| GTTATGCACTTTACTTGTTC+CGG | 0.355959 | 1.1:-27021078 | MS.gene65947:CDS |
| GTTCCTGGTCTTGTTGGATT+TGG | 0.357998 | 1.1:+27022403 | None:intergenic |
| TTCTTACTCCAATGATCATA+TGG | 0.361816 | 1.1:+27021392 | None:intergenic |
| AAAGGGTATCCAACTGGTAT+TGG | 0.365619 | 1.1:-27021149 | MS.gene65947:CDS |
| ATAAAATGACTAGTGATAAA+AGG | 0.372330 | 1.1:-27021751 | MS.gene65947:CDS |
| CTTGGTGTGATCAACTTTGT+TGG | 0.383711 | 1.1:-27021104 | MS.gene65947:CDS |
| GCGTTGTGCAGTACTGTTCC+TGG | 0.385561 | 1.1:-27021515 | MS.gene65947:CDS |
| GGAAGTGTTCCTGGTCTTGT+TGG | 0.393755 | 1.1:+27022397 | None:intergenic |
| AGTGTTCAAGCAGCTGTAAC+AGG | 0.394001 | 1.1:-27022370 | MS.gene65947:CDS |
| TGGATACCCTTTATCGGTCT+TGG | 0.398885 | 1.1:+27021160 | None:intergenic |
| TTCACTACAATTGTAATAGC+TGG | 0.400613 | 1.1:-27022508 | MS.gene65947:CDS |
| CCCTTGTCACAAAGTTGTTA+GGG | 0.410280 | 1.1:-27022444 | MS.gene65947:CDS |
| TGGAGACTTATTCTTATGTT+CGG | 0.411605 | 1.1:-27021926 | MS.gene65947:CDS |
| ACCAGTTGGATACCCTTTAT+CGG | 0.412868 | 1.1:+27021154 | None:intergenic |
| GTCACTCAGCAAGAAGGATC+AGG | 0.421052 | 1.1:-27020996 | MS.gene65947:CDS |
| TCAGCTGCCGCTGGAAAGGC+AGG | 0.422195 | 1.1:-27021236 | MS.gene65947:CDS |
| AAGGGTATCCAACTGGTATT+GGG | 0.427208 | 1.1:-27021148 | MS.gene65947:CDS |
| TTGGTGTGATCAACTTTGTT+GGG | 0.429517 | 1.1:-27021103 | MS.gene65947:CDS |
| AGCTGCGGCGGATATGTCTA+AGG | 0.440399 | 1.1:-27021813 | MS.gene65947:CDS |
| TGTTTGGAACATGCAGTACT+TGG | 0.440697 | 1.1:-27021676 | MS.gene65947:CDS |
| TCGTTTCGCTATTCAAATGA+TGG | 0.440848 | 1.1:-27021456 | MS.gene65947:CDS |
| ATTCGCAAAACGACATGGTT+GGG | 0.441758 | 1.1:-27021702 | MS.gene65947:CDS |
| TACAATTGTAATAGCTGGAA+TGG | 0.442664 | 1.1:-27022503 | MS.gene65947:CDS |
| GTAAGAAAGATAACAGAATT+GGG | 0.443072 | 1.1:-27021376 | MS.gene65947:CDS |
| CAGGCCAATTATTCTTTGGT+TGG | 0.445254 | 1.1:-27022324 | MS.gene65947:CDS |
| GTAACAAATTCAGTCATGTC+TGG | 0.451043 | 1.1:-27022583 | None:intergenic |
| GGTTGGCTTGGGGACAAAAT+GGG | 0.456779 | 1.1:-27022307 | MS.gene65947:CDS |
| CTATTACAATTGTAGTGAAA+TGG | 0.457116 | 1.1:+27022512 | None:intergenic |
| GTAACAGGTGTTGCACTTGT+TGG | 0.458063 | 1.1:-27022355 | MS.gene65947:CDS |
| CACGGAATCTCAGCTGCCGC+TGG | 0.459217 | 1.1:-27021245 | MS.gene65947:CDS |
| TTGCCATACCATATGATCAT+TGG | 0.461981 | 1.1:-27021400 | MS.gene65947:CDS |
| GGCAGCTGAGATTCCGTGAC+AGG | 0.468128 | 1.1:+27021250 | None:intergenic |
| AAGAACTCTCTTATCATGCT+TGG | 0.472490 | 1.1:-27021122 | MS.gene65947:CDS |
| ACCGATAAAGGGTATCCAAC+TGG | 0.474139 | 1.1:-27021155 | MS.gene65947:CDS |
| TGTTCCTGGTTACTGGTTCA+CGG | 0.475880 | 1.1:-27021501 | MS.gene65947:CDS |
| GTTACAGCTGCTTGAACACT+TGG | 0.480934 | 1.1:+27022373 | None:intergenic |
| CAGTAGTACGTCAATGCAGC+TGG | 0.487577 | 1.1:+27021896 | None:intergenic |
| TTCTTAATCCCAATACCAGT+TGG | 0.488319 | 1.1:+27021140 | None:intergenic |
| TTTACTTGTTCCGGAATCAA+AGG | 0.491533 | 1.1:-27021069 | MS.gene65947:CDS |
| GGCACTAACAATGATGCTGC+TGG | 0.492284 | 1.1:+27021965 | None:intergenic |
| AATCTCAGCTGCCGCTGGAA+AGG | 0.496144 | 1.1:-27021240 | MS.gene65947:CDS |
| GCACTTGTTGGAACACTAGC+AGG | 0.499060 | 1.1:-27022343 | MS.gene65947:CDS |
| CAGCTGCATTGACGTACTAC+TGG | 0.499570 | 1.1:-27021895 | MS.gene65947:CDS |
| GGTAGCATTTATCGATTACA+TGG | 0.501537 | 1.1:-27021480 | MS.gene65947:CDS |
| TTACTTGTTCCGGAATCAAA+GGG | 0.501725 | 1.1:-27021068 | MS.gene65947:CDS |
| ATTATTCTTTGGTTGGCTTG+GGG | 0.503981 | 1.1:-27022317 | MS.gene65947:CDS |
| ACAATTGTAATAGCTGGAAT+GGG | 0.504066 | 1.1:-27022502 | MS.gene65947:CDS |
| ATCCTACCAAGACCGATAAA+GGG | 0.505979 | 1.1:-27021166 | MS.gene65947:CDS |
| CGTTTCGCTATTCAAATGAT+GGG | 0.506889 | 1.1:-27021455 | MS.gene65947:CDS |
| AATTCGCAAAACGACATGGT+TGG | 0.511343 | 1.1:-27021703 | MS.gene65947:CDS |
| GGAAAGGCAGGAGCAATTGT+TGG | 0.523447 | 1.1:-27021224 | MS.gene65947:CDS |
| AGTGATAAAAGGAATAGTTA+TGG | 0.524232 | 1.1:-27021740 | MS.gene65947:CDS |
| CTCCAAACATAATCAAATTG+AGG | 0.545090 | 1.1:+27021944 | None:intergenic |
| AGTTGAACTTGAAGTTGAAG+AGG | 0.547307 | 1.1:-27021783 | MS.gene65947:CDS |
| CCCTAACAACTTTGTGACAA+GGG | 0.549878 | 1.1:+27022444 | None:intergenic |
| GGAATCAAAGGGAAAATCGT+TGG | 0.559818 | 1.1:-27021057 | MS.gene65947:CDS |
| ACTTGAAGTTGAAGAGGAGA+AGG | 0.567678 | 1.1:-27021777 | MS.gene65947:CDS |
| ACTCCAATGATCATATGGTA+TGG | 0.568949 | 1.1:+27021397 | None:intergenic |
| GAATGAAGGAGAAAGTGTTG+AGG | 0.572253 | 1.1:-27021018 | MS.gene65947:CDS |
| ACAGCTGCTTGAACACTTGG+TGG | 0.576896 | 1.1:+27022376 | None:intergenic |
| TCACTCAGCAAGAAGGATCA+GGG | 0.579055 | 1.1:-27020995 | MS.gene65947:CDS |
| AGGTTAAGGTCAACCTGTCA+CGG | 0.579119 | 1.1:-27021263 | MS.gene65947:CDS |
| AAATCGTTGGAGGAGTTGAG+TGG | 0.580671 | 1.1:-27021044 | MS.gene65947:CDS |
| GAGTTGAGTGGAGAGAATGA+AGG | 0.588163 | 1.1:-27021032 | MS.gene65947:CDS |
| CAGGTTGACCTTAACCTAGC+CGG | 0.591908 | 1.1:+27021269 | None:intergenic |
| AGAAATGAATGCAATTCATG+AGG | 0.592937 | 1.1:-27021570 | MS.gene65947:CDS |
| TCCCTAACAACTTTGTGACA+AGG | 0.594495 | 1.1:+27022443 | None:intergenic |
| GCCAGAAACAGCTCGTTACA+CGG | 0.595760 | 1.1:-27021861 | MS.gene65947:CDS |
| CGCAATCGGATGGATCCCTC+CGG | 0.601936 | 1.1:-27021597 | MS.gene65947:CDS |
| GTTGAGGTCACTCAGCAAGA+AGG | 0.603143 | 1.1:-27021002 | MS.gene65947:CDS |
| TACCCTTTATCGGTCTTGGT+AGG | 0.605944 | 1.1:+27021164 | None:intergenic |
| GCTACCGTGAACCAGTAACC+AGG | 0.610535 | 1.1:+27021497 | None:intergenic |
| ATCAAAGGGAAAATCGTTGG+AGG | 0.621552 | 1.1:-27021054 | MS.gene65947:CDS |
| AGTGCTTAATGCACTAGATG+TGG | 0.623842 | 1.1:-27022551 | MS.gene65947:CDS |
| TACAACATTTGTTGTACCTG+CGG | 0.625308 | 1.1:-27021300 | MS.gene65947:CDS |
| AAGCAATTCGCAAAACGACA+TGG | 0.630348 | 1.1:-27021707 | MS.gene65947:CDS |
| GAACCAAATCCAACAAGACC+AGG | 0.636167 | 1.1:-27022406 | MS.gene65947:CDS |
| GAACGCGAAACAAGCTGCGG+CGG | 0.641195 | 1.1:-27021825 | MS.gene65947:CDS |
| CACTCAGCAAGAAGGATCAG+GGG | 0.650090 | 1.1:-27020994 | MS.gene65947:CDS |
| AATTGCTCCTGCCTTTCCAG+CGG | 0.674047 | 1.1:+27021229 | None:intergenic |
| GTAGCATTTATCGATTACAT+GGG | 0.679017 | 1.1:-27021479 | MS.gene65947:CDS |
| TAAGAACGCGAAACAAGCTG+CGG | 0.705027 | 1.1:-27021828 | MS.gene65947:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATTTGATCACAAATATA+AGG | - | chr1.1:27021549-27021568 | MS.gene65947:CDS | 15.0% |
| !! | ATAAAATGACTAGTGATAAA+AGG | - | chr1.1:27021806-27021825 | MS.gene65947:CDS | 20.0% |
| ! | AGTAAGAAAGATAACAGAAT+TGG | - | chr1.1:27022180-27022199 | MS.gene65947:intron | 25.0% |
| ! | AGTGATAAAAGGAATAGTTA+TGG | - | chr1.1:27021817-27021836 | MS.gene65947:CDS | 25.0% |
| ! | CTATTACAATTGTAGTGAAA+TGG | + | chr1.1:27021048-27021067 | None:intergenic | 25.0% |
| ! | GTAAGAAAGATAACAGAATT+GGG | - | chr1.1:27022181-27022200 | MS.gene65947:intron | 25.0% |
| ! | TATGCTAACAAAAAAACTAG+AGG | - | chr1.1:27021448-27021467 | MS.gene65947:CDS | 25.0% |
| !! | ACATTCTTCTTTGCTAATTT+TGG | - | chr1.1:27022225-27022244 | MS.gene65947:intron | 25.0% |
| !! | ATGGGAAGAAAAAAAGTATA+TGG | - | chr1.1:27021268-27021287 | MS.gene65947:CDS | 25.0% |
| ACAACAAATGTTGTAGCATT+TGG | + | chr1.1:27022252-27022271 | None:intergenic | 30.0% | |
| ACAATTGTAATAGCTGGAAT+GGG | - | chr1.1:27021055-27021074 | MS.gene65947:CDS | 30.0% | |
| AGAAATGAATGCAATTCATG+AGG | - | chr1.1:27021987-27022006 | MS.gene65947:CDS | 30.0% | |
| CTCCAAACATAATCAAATTG+AGG | + | chr1.1:27021616-27021635 | None:intergenic | 30.0% | |
| TAATATACCAAAACCTTGCA+TGG | + | chr1.1:27021497-27021516 | None:intergenic | 30.0% | |
| TACAATTGTAATAGCTGGAA+TGG | - | chr1.1:27021054-27021073 | MS.gene65947:CDS | 30.0% | |
| TGCCTCAATTTGATTATGTT+TGG | - | chr1.1:27021611-27021630 | MS.gene65947:CDS | 30.0% | |
| TGGAGACTTATTCTTATGTT+CGG | - | chr1.1:27021631-27021650 | MS.gene65947:CDS | 30.0% | |
| TGGTTTAACTCTTATTCTCA+TGG | - | chr1.1:27021288-27021307 | MS.gene65947:CDS | 30.0% | |
| TTCACTACAATTGTAATAGC+TGG | - | chr1.1:27021049-27021068 | MS.gene65947:CDS | 30.0% | |
| TTCTTACTCCAATGATCATA+TGG | + | chr1.1:27022168-27022187 | None:intergenic | 30.0% | |
| TTTAACTCTTATTCTCATGG+TGG | - | chr1.1:27021291-27021310 | MS.gene65947:CDS | 30.0% | |
| ! | ATTGCATTCATTTCTTTTGC+CGG | + | chr1.1:27021982-27022001 | None:intergenic | 30.0% |
| ! | GTAGCATTTATCGATTACAT+GGG | - | chr1.1:27022078-27022097 | MS.gene65947:intron | 30.0% |
| !! | AATTATTCTTTGGTTGGCTT+GGG | - | chr1.1:27021239-27021258 | MS.gene65947:CDS | 30.0% |
| !! | ATGCAAGGTTTTGGTATATT+AGG | - | chr1.1:27021496-27021515 | MS.gene65947:CDS | 30.0% |
| !! | CACTTTGTTTCTTTAGGTTT+TGG | - | chr1.1:27021371-27021390 | MS.gene65947:CDS | 30.0% |
| AAGAACTCTCTTATCATGCT+TGG | - | chr1.1:27022435-27022454 | MS.gene65947:CDS | 35.0% | |
| ACATGATTGTAGCTGAAAGA+GGG | + | chr1.1:27021423-27021442 | None:intergenic | 35.0% | |
| ACTCCAATGATCATATGGTA+TGG | + | chr1.1:27022163-27022182 | None:intergenic | 35.0% | |
| AGTTGAACTTGAAGTTGAAG+AGG | - | chr1.1:27021774-27021793 | MS.gene65947:CDS | 35.0% | |
| CAAGCCAACCAAAGAATAAT+TGG | + | chr1.1:27021240-27021259 | None:intergenic | 35.0% | |
| CGTTTCGCTATTCAAATGAT+GGG | - | chr1.1:27022102-27022121 | MS.gene65947:intron | 35.0% | |
| GTTATGCACTTTACTTGTTC+CGG | - | chr1.1:27022479-27022498 | MS.gene65947:CDS | 35.0% | |
| TCGTTTCGCTATTCAAATGA+TGG | - | chr1.1:27022101-27022120 | MS.gene65947:intron | 35.0% | |
| TTACTTGTTCCGGAATCAAA+GGG | - | chr1.1:27022489-27022508 | MS.gene65947:CDS | 35.0% | |
| TTCTTAATCCCAATACCAGT+TGG | + | chr1.1:27022420-27022439 | None:intergenic | 35.0% | |
| TTGCCATACCATATGATCAT+TGG | - | chr1.1:27022157-27022176 | MS.gene65947:intron | 35.0% | |
| TTGGTGTGATCAACTTTGTT+GGG | - | chr1.1:27022454-27022473 | MS.gene65947:CDS | 35.0% | |
| TTTACTTGTTCCGGAATCAA+AGG | - | chr1.1:27022488-27022507 | MS.gene65947:CDS | 35.0% | |
| ! | AACGATTTTCCCTTTGATTC+CGG | + | chr1.1:27022501-27022520 | None:intergenic | 35.0% |
| ! | CAATTATTCTTTGGTTGGCT+TGG | - | chr1.1:27021238-27021257 | MS.gene65947:CDS | 35.0% |
| ! | CAGTCAGAATCTTTTCCAAA+AGG | - | chr1.1:27021927-27021946 | MS.gene65947:CDS | 35.0% |
| ! | GGTAGCATTTATCGATTACA+TGG | - | chr1.1:27022077-27022096 | MS.gene65947:intron | 35.0% |
| ! | TGGCAACACTTTGTTTCTTT+AGG | - | chr1.1:27021365-27021384 | MS.gene65947:CDS | 35.0% |
| ! | TTGCGCTAAAAATGTCCTTT+TGG | + | chr1.1:27021945-27021964 | None:intergenic | 35.0% |
| !! | ATCAAGTCCAAAGAGTGTTA+TGG | - | chr1.1:27021345-27021364 | MS.gene65947:CDS | 35.0% |
| !! | ATGCAGTACTTGGTTTTTGT+TGG | - | chr1.1:27021891-27021910 | MS.gene65947:CDS | 35.0% |
| !! | ATTATTCTTTGGTTGGCTTG+GGG | - | chr1.1:27021240-27021259 | MS.gene65947:CDS | 35.0% |
| !! | CAAGGTTTTGGTATATTAGG+TGG | - | chr1.1:27021499-27021518 | MS.gene65947:CDS | 35.0% |
| !! | TACAACATTTGTTGTACCTG+CGG | - | chr1.1:27022257-27022276 | MS.gene65947:intron | 35.0% |
| !! | TGGAATTGTTGCTTTGATTG+TGG | - | chr1.1:27021522-27021541 | MS.gene65947:CDS | 35.0% |
| !!! | AAGGACATTTTTAGCGCAAT+CGG | - | chr1.1:27021946-27021965 | MS.gene65947:CDS | 35.0% |
| !!! | TGTTTCTTTAGGTTTTGGCT+TGG | - | chr1.1:27021376-27021395 | MS.gene65947:CDS | 35.0% |
| !!! | TTTAGGTTTTGGCTTGGTTT+TGG | - | chr1.1:27021382-27021401 | MS.gene65947:CDS | 35.0% |
| !!! | TTTTGGCTTGGTTTTGGTAT+TGG | - | chr1.1:27021388-27021407 | MS.gene65947:CDS | 35.0% |
| AAGCAATTCGCAAAACGACA+TGG | - | chr1.1:27021850-27021869 | MS.gene65947:CDS | 40.0% | |
| AATTCGCAAAACGACATGGT+TGG | - | chr1.1:27021854-27021873 | MS.gene65947:CDS | 40.0% | |
| ACCAGTTGGATACCCTTTAT+CGG | + | chr1.1:27022406-27022425 | None:intergenic | 40.0% | |
| ACTTGAAGTTGAAGAGGAGA+AGG | - | chr1.1:27021780-27021799 | MS.gene65947:CDS | 40.0% | |
| AGTGCTTAATGCACTAGATG+TGG | - | chr1.1:27021006-27021025 | MS.gene65947:CDS | 40.0% | |
| AGTGTTGCCATAACACTCTT+TGG | + | chr1.1:27021355-27021374 | None:intergenic | 40.0% | |
| ATCAAAGGGAAAATCGTTGG+AGG | - | chr1.1:27022503-27022522 | MS.gene65947:CDS | 40.0% | |
| ATCCTACCAAGACCGATAAA+GGG | - | chr1.1:27022391-27022410 | MS.gene65947:CDS | 40.0% | |
| ATTCGCAAAACGACATGGTT+GGG | - | chr1.1:27021855-27021874 | MS.gene65947:CDS | 40.0% | |
| CAGGCCAATTATTCTTTGGT+TGG | - | chr1.1:27021233-27021252 | MS.gene65947:CDS | 40.0% | |
| CCCTAACAACTTTGTGACAA+GGG | + | chr1.1:27021116-27021135 | None:intergenic | 40.0% | |
| CCCTTGTCACAAAGTTGTTA+GGG | - | chr1.1:27021113-27021132 | MS.gene65947:CDS | 40.0% | |
| CTAGCAGGCCAATTATTCTT+TGG | - | chr1.1:27021229-27021248 | MS.gene65947:CDS | 40.0% | |
| GACATGATTGTAGCTGAAAG+AGG | + | chr1.1:27021424-27021443 | None:intergenic | 40.0% | |
| GGAATCAAAGGGAAAATCGT+TGG | - | chr1.1:27022500-27022519 | MS.gene65947:CDS | 40.0% | |
| TCCCTAACAACTTTGTGACA+AGG | + | chr1.1:27021117-27021136 | None:intergenic | 40.0% | |
| TCCCTTGTCACAAAGTTGTT+AGG | - | chr1.1:27021112-27021131 | MS.gene65947:CDS | 40.0% | |
| ! | AGATTTTTCCGGCTAGGTTA+AGG | - | chr1.1:27022280-27022299 | MS.gene65947:intron | 40.0% |
| ! | CATTCATTTCTTTTGCCGGA+GGG | + | chr1.1:27021978-27021997 | None:intergenic | 40.0% |
| ! | CTTGGTGTGATCAACTTTGT+TGG | - | chr1.1:27022453-27022472 | MS.gene65947:CDS | 40.0% |
| ! | GCTGGATTTTCTTCAAAGGT+GGG | + | chr1.1:27021577-27021596 | None:intergenic | 40.0% |
| ! | GTTTTTGCCATGCAAGGTTT+TGG | - | chr1.1:27021487-27021506 | MS.gene65947:CDS | 40.0% |
| ! | TGCTGCTGGATTTTCTTCAA+AGG | + | chr1.1:27021581-27021600 | None:intergenic | 40.0% |
| ! | TGCTGGATTTTCTTCAAAGG+TGG | + | chr1.1:27021578-27021597 | None:intergenic | 40.0% |
| ! | TGTTTGGAACATGCAGTACT+TGG | - | chr1.1:27021881-27021900 | MS.gene65947:CDS | 40.0% |
| !! | AAAGGGTATCCAACTGGTAT+TGG | - | chr1.1:27022408-27022427 | MS.gene65947:CDS | 40.0% |
| !! | AAGGGTATCCAACTGGTATT+GGG | - | chr1.1:27022409-27022428 | MS.gene65947:CDS | 40.0% |
| !! | GAATGAAGGAGAAAGTGTTG+AGG | - | chr1.1:27022539-27022558 | MS.gene65947:CDS | 40.0% |
| !! | GGTTTTGGTATATTAGGTGG+TGG | - | chr1.1:27021502-27021521 | MS.gene65947:CDS | 40.0% |
| !!! | ACATTTTTAGCGCAATCGGA+TGG | - | chr1.1:27021950-27021969 | MS.gene65947:CDS | 40.0% |
| AAATCGTTGGAGGAGTTGAG+TGG | - | chr1.1:27022513-27022532 | MS.gene65947:CDS | 45.0% | |
| AGGTTAAGGTCAACCTGTCA+CGG | - | chr1.1:27022294-27022313 | MS.gene65947:intron | 45.0% | |
| AGTGTTCAAGCAGCTGTAAC+AGG | - | chr1.1:27021187-27021206 | MS.gene65947:CDS | 45.0% | |
| GAACCAAATCCAACAAGACC+AGG | - | chr1.1:27021151-27021170 | MS.gene65947:CDS | 45.0% | |
| GAGTTGAGTGGAGAGAATGA+AGG | - | chr1.1:27022525-27022544 | MS.gene65947:CDS | 45.0% | |
| GATCCTACCAAGACCGATAA+AGG | - | chr1.1:27022390-27022409 | MS.gene65947:CDS | 45.0% | |
| GGAGCAATTGTTGGTGCATT+TGG | - | chr1.1:27022342-27022361 | MS.gene65947:CDS | 45.0% | |
| GTTACAGCTGCTTGAACACT+TGG | + | chr1.1:27021187-27021206 | None:intergenic | 45.0% | |
| TAAGAACGCGAAACAAGCTG+CGG | - | chr1.1:27021729-27021748 | MS.gene65947:CDS | 45.0% | |
| TACCCTTTATCGGTCTTGGT+AGG | + | chr1.1:27022396-27022415 | None:intergenic | 45.0% | |
| TCACTCAGCAAGAAGGATCA+GGG | - | chr1.1:27022562-27022581 | MS.gene65947:CDS | 45.0% | |
| TGGATACCCTTTATCGGTCT+TGG | + | chr1.1:27022400-27022419 | None:intergenic | 45.0% | |
| ! | GCATTCATTTCTTTTGCCGG+AGG | + | chr1.1:27021979-27021998 | None:intergenic | 45.0% |
| ! | GTAACAGGTGTTGCACTTGT+TGG | - | chr1.1:27021202-27021221 | MS.gene65947:CDS | 45.0% |
| ! | GTGGTATGTTCTGTTGCTTC+AGG | - | chr1.1:27021310-27021329 | MS.gene65947:CDS | 45.0% |
| ! | GTTGCTTCAGGACTCTCTTT+TGG | - | chr1.1:27021322-27021341 | MS.gene65947:CDS | 45.0% |
| ! | TGTACCTGCGGAGATTTTTC+CGG | - | chr1.1:27022269-27022288 | MS.gene65947:intron | 45.0% |
| !! | ACCGATAAAGGGTATCCAAC+TGG | - | chr1.1:27022402-27022421 | MS.gene65947:CDS | 45.0% |
| !! | GTTCCTGGTCTTGTTGGATT+TGG | + | chr1.1:27021157-27021176 | None:intergenic | 45.0% |
| !! | TGTTCCTGGTTACTGGTTCA+CGG | - | chr1.1:27022056-27022075 | MS.gene65947:intron | 45.0% |
| !!! | TGGCTTGGTTTTGGTATTGG+TGG | - | chr1.1:27021391-27021410 | MS.gene65947:CDS | 45.0% |
| AATTGCTCCTGCCTTTCCAG+CGG | + | chr1.1:27022331-27022350 | None:intergenic | 50.0% | |
| ACAGCTGCTTGAACACTTGG+TGG | + | chr1.1:27021184-27021203 | None:intergenic | 50.0% | |
| CACTCAGCAAGAAGGATCAG+GGG | - | chr1.1:27022563-27022582 | MS.gene65947:CDS | 50.0% | |
| CAGTAGTACGTCAATGCAGC+TGG | + | chr1.1:27021664-27021683 | None:intergenic | 50.0% | |
| GCAGTACTGTTCCTGGTTAC+TGG | - | chr1.1:27022049-27022068 | MS.gene65947:intron | 50.0% | |
| GCCAGAAACAGCTCGTTACA+CGG | - | chr1.1:27021696-27021715 | MS.gene65947:CDS | 50.0% | |
| GGAAAGGCAGGAGCAATTGT+TGG | - | chr1.1:27022333-27022352 | MS.gene65947:CDS | 50.0% | |
| GGCACTAACAATGATGCTGC+TGG | + | chr1.1:27021595-27021614 | None:intergenic | 50.0% | |
| GTCACTCAGCAAGAAGGATC+AGG | - | chr1.1:27022561-27022580 | MS.gene65947:CDS | 50.0% | |
| GTTGAGGTCACTCAGCAAGA+AGG | - | chr1.1:27022555-27022574 | MS.gene65947:CDS | 50.0% | |
| ! | CAGCTGCATTGACGTACTAC+TGG | - | chr1.1:27021662-27021681 | MS.gene65947:CDS | 50.0% |
| ! | CAGGTTGACCTTAACCTAGC+CGG | + | chr1.1:27022291-27022310 | None:intergenic | 50.0% |
| ! | GCACTTGTTGGAACACTAGC+AGG | - | chr1.1:27021214-27021233 | MS.gene65947:CDS | 50.0% |
| !! | ACACTTGGTGGAAGTGTTCC+TGG | + | chr1.1:27021172-27021191 | None:intergenic | 50.0% |
| !! | CGACATGGTTGGGCTTTGTT+TGG | - | chr1.1:27021865-27021884 | MS.gene65947:CDS | 50.0% |
| !! | GGAAGTGTTCCTGGTCTTGT+TGG | + | chr1.1:27021163-27021182 | None:intergenic | 50.0% |
| !! | GGTTGGCTTGGGGACAAAAT+GGG | - | chr1.1:27021250-27021269 | MS.gene65947:CDS | 50.0% |
| !! | TGGTTGGCTTGGGGACAAAA+TGG | - | chr1.1:27021249-27021268 | MS.gene65947:CDS | 50.0% |
| !!! | GCTGCTGTTTTTGCCATGCA+AGG | - | chr1.1:27021481-27021500 | MS.gene65947:CDS | 50.0% |
| AATCTCAGCTGCCGCTGGAA+AGG | - | chr1.1:27022317-27022336 | MS.gene65947:CDS | 55.0% | |
| AGCTGCGGCGGATATGTCTA+AGG | - | chr1.1:27021744-27021763 | MS.gene65947:CDS | 55.0% | |
| CTAGCCGGAAAAATCTCCGC+AGG | + | chr1.1:27022276-27022295 | None:intergenic | 55.0% | |
| GCGTTGTGCAGTACTGTTCC+TGG | - | chr1.1:27022042-27022061 | MS.gene65947:intron | 55.0% | |
| GCTACCGTGAACCAGTAACC+AGG | + | chr1.1:27022063-27022082 | None:intergenic | 55.0% | |
| ! | CTGCGGAGATTTTTCCGGCT+AGG | - | chr1.1:27022274-27022293 | MS.gene65947:intron | 55.0% |
| ! | GCCGTGTAACGAGCTGTTTC+TGG | + | chr1.1:27021700-27021719 | None:intergenic | 55.0% |
| CGCAATCGGATGGATCCCTC+CGG | - | chr1.1:27021960-27021979 | MS.gene65947:CDS | 60.0% | |
| GAACGCGAAACAAGCTGCGG+CGG | - | chr1.1:27021732-27021751 | MS.gene65947:CDS | 60.0% | |
| GGCAGCTGAGATTCCGTGAC+AGG | + | chr1.1:27022310-27022329 | None:intergenic | 60.0% | |
| CACGGAATCTCAGCTGCCGC+TGG | - | chr1.1:27022312-27022331 | MS.gene65947:CDS | 65.0% | |
| TCAGCTGCCGCTGGAAAGGC+AGG | - | chr1.1:27022321-27022340 | MS.gene65947:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 27020989 | 27022590 | 27020989 | ID=MS.gene65947 |
| chr1.1 | mRNA | 27020989 | 27022590 | 27020989 | ID=MS.gene65947.t1;Parent=MS.gene65947 |
| chr1.1 | exon | 27022297 | 27022590 | 27022297 | ID=MS.gene65947.t1.exon1;Parent=MS.gene65947.t1 |
| chr1.1 | CDS | 27022297 | 27022590 | 27022297 | ID=cds.MS.gene65947.t1;Parent=MS.gene65947.t1 |
| chr1.1 | exon | 27020989 | 27022008 | 27020989 | ID=MS.gene65947.t1.exon2;Parent=MS.gene65947.t1 |
| chr1.1 | CDS | 27020989 | 27022008 | 27020989 | ID=cds.MS.gene65947.t1;Parent=MS.gene65947.t1 |
| Gene Sequence |
| Protein sequence |
