AlfalfaGEDB | MS.gene66005

M. sativa cultivar XinJiangDaYe / MS.gene66005

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030246 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF00139.22

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66005.t1	AET03324.2	81.5	648	65	2	1	648	7	599	4.70E-305	1056.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66005.t1	Q9LXA5	55.0	654	274	11	9	648	4	651	4.4e-195	682.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66005.t1	G7LHU0	81.5	648	65	2	1	648	7	599	3.4e-305	1056.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene000818	MS.gene66005	PPI
MS.gene000819	MS.gene66005	PPI
MS.gene000820	MS.gene66005	PPI
MS.gene000823	MS.gene66005	PPI
MS.gene000832	MS.gene66005	PPI
MS.gene035518	MS.gene66005	PPI
MS.gene055222	MS.gene66005	PPI
MS.gene055229	MS.gene66005	PPI
MS.gene055230	MS.gene66005	PPI
MS.gene46130	MS.gene66005	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66005.t1	MTR_8g067930	79.479	653	127	4	1	648	1	651	0.0	1078
MS.gene66005.t1	MTR_8g067735	76.723	653	145	4	1	648	20	670	0.0	1045
MS.gene66005.t1	MTR_8g067720	77.914	652	138	4	1	648	1	650	0.0	1044
MS.gene66005.t1	MTR_8g067630	77.160	648	93	3	1	648	7	599	0.0	987
MS.gene66005.t1	MTR_8g067690	72.615	650	157	4	1	648	37	667	0.0	941
MS.gene66005.t1	MTR_8g068050	52.923	633	288	9	4	629	17	646	0.0	640
MS.gene66005.t1	MTR_4g093080	47.201	661	315	12	3	643	6	652	0.0	601
MS.gene66005.t1	MTR_4g093070	50.000	588	278	9	66	643	71	652	0.0	545
MS.gene66005.t1	MTR_4g093110	46.584	644	312	15	1	626	1	630	1.63e-175	515
MS.gene66005.t1	MTR_4g093050	48.780	574	281	8	66	631	72	640	1.13e-174	512

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66005.t1	AT5G10530	56.847	628	255	9	9	626	4	625	0.0	708
MS.gene66005.t1	AT5G65600	52.989	619	270	11	23	626	34	646	0.0	638
MS.gene66005.t1	AT2G37710	37.177	581	326	9	65	619	62	629	3.35e-126	388
MS.gene66005.t1	AT3G53810	37.043	629	345	14	22	619	22	630	1.25e-125	387
MS.gene66005.t1	AT4G02420	36.215	671	370	16	9	643	8	656	5.28e-121	375
MS.gene66005.t1	AT5G06740	38.765	583	323	17	65	634	69	630	9.79e-121	374
MS.gene66005.t1	AT5G06740	38.765	583	323	17	65	634	81	642	1.27e-120	374
MS.gene66005.t1	AT4G02410	36.320	625	360	11	22	619	24	637	4.10e-120	372
MS.gene66005.t1	AT5G55830	35.194	645	363	14	22	626	28	657	3.14e-119	370
MS.gene66005.t1	AT4G29050	37.349	581	323	12	64	616	57	624	1.80e-118	368

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Find 155 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATCACCTCTTTCTTG+GGG	0.597658	8.1:-37048343	MS.gene66005:CDS
AAAGAGGAGCAGGGCCCAGA+AGG	0.492223	8.1:-37048669	MS.gene66005:CDS
AAAGCAGTAGCTGAATTTGG+TGG	0.578861	8.1:+37049264	None:intergenic
AAATAAATGCGAAGAAGAAA+AGG	0.425491	8.1:+37049595	None:intergenic
AACAGTGGTGGCTGGAACCT+TGG	0.297470	8.1:-37048137	MS.gene66005:CDS
AAGATAAGGGGTTGATTGAG+TGG	0.503926	8.1:-37047985	MS.gene66005:CDS
AAGCTAATGGACCATGAGAT+TGG	0.442027	8.1:-37048169	MS.gene66005:CDS
AAGGAACAAGATGAAGATAA+GGG	0.443076	8.1:-37047998	MS.gene66005:CDS
AAGTTAGGTCAAGGCGGGTT+TGG	0.439233	8.1:-37048595	MS.gene66005:CDS
AATAAATGCGAAGAAGAAAA+GGG	0.494016	8.1:+37049596	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAGCAGTAGCTGAATT+TGG	+	chr8.1:37048060-37048079	None:intergenic	30.0%
AAGGAACAAGATGAAGATAA+GGG	-	chr8.1:37049320-37049339	MS.gene66005:CDS	30.0%
AATACTAACAGTCTCTTTAG+GGG	-	chr8.1:37048512-37048531	MS.gene66005:CDS	30.0%
ACTCAAAATGCTTCTGAATA+TGG	-	chr8.1:37047988-37048007	MS.gene66005:CDS	30.0%
ATGGGAATTTAATTCCACTT+TGG	-	chr8.1:37048452-37048471	MS.gene66005:CDS	30.0%
ATGTAGATATAGCAAACTAG+AGG	+	chr8.1:37049030-37049049	None:intergenic	30.0%
CATAGATGAGAATTTGCAAA+AGG	-	chr8.1:37049394-37049413	MS.gene66005:CDS	30.0%
CCAAAAATTTGACAGTATCT+TGG	-	chr8.1:37048289-37048308	MS.gene66005:CDS	30.0%
CTGTGAAGAAAATATCAAGA+GGG	-	chr8.1:37048790-37048809	MS.gene66005:CDS	30.0%
GCTATATCTACATGAAGAAT+GGG	-	chr8.1:37049037-37049056	MS.gene66005:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.1	gene	37047697	37049643	37047697	ID=MS.gene66005
chr8.1	mRNA	37047697	37049643	37047697	ID=MS.gene66005.t1;Parent=MS.gene66005
chr8.1	exon	37047697	37049643	37047697	ID=MS.gene66005.t1.exon1;Parent=MS.gene66005.t1
chr8.1	CDS	37047697	37049643	37047697	ID=cds.MS.gene66005.t1;Parent=MS.gene66005.t1

Gene Sequence

>MS.gene66005

ATGGCTCCTAGTTTCTATACCGTTTCCCTTTTCTTCTTCGCATTTATTTTCTTTACTTTCCCTTCAAATTCAATTCACTTCCAAATTACCAGTTTTAATCCTAATGATGCAAACATACTCTACCAAGGTTCAGCAGCACCACGAGATGGAAAAGTTGATTTTAACATTTATGAAATTGAAAAGTATCCATTTCAAGTTGGACGGGCCATGTATTCCAAAGAGGTGTTACTTTGGGATTCAAAAACAGGTCAAGTCACTGATTTCAAAACCCATTACACTTTTATCATTGACACTCAAAATGCTTCTGAATATGGTCATGGACTTGCCTTTTTCATGGCTCCTTTTGGTTTTGAAATTCCACCAAATTCAGCTACTGCTTTTTTGGGCCTATTTAACACGACAACTAAGGTTTCATCTAGTAATCAAATTGTTCTGGTGGAGTTTGATTCTTATATAAATGGTAAATGGGGTGAGACAACGGAGCATGTGGGAATCAACATTAATTCAATCATTACATCGGTGTCAACACCTTGGAATGCAAGTTTACATAGTGGAGACATTGCTGAGGTATGGATTAGTTTCAATTCTACAACCAAAAATTTGACAGTATCTTGGAAATACCAAAGAACTTCTAATCCTCAAGAGAAAACTAGCCTTTCATATGAAATTGATTTAATTAAGGTTTTGCCTGAGTGGGTTACCATAGGATTTTCTGCTTCAATAGGTAACATAAGAGAATTAAATACTCTTTTGTCATGGGAATTTAATTCCACTTTGGAGAAAAGTGATGATAATAAAGAGACAAGATTAGTTATAATACTAACAGTCTCTTTAGGGGTTGTAATTATAGGAGTGGGAGCATTGGTAGCATATGTAATACTTCGTAGGAAAATAAAGAGAAGTAAAATGCAAAAAGATGTTATTCATTTAACCTCAATGAATCATGACCTTGAAAGAGGAGCAGGGCCCAGAAGGTTTACCTATGAAGAACTTGATATGGCAACCAACAACTTCACCAGTGATCGAAAGTTAGGTCAAGGCGGGTTTGGAGCGGTTTATAAAGGTTACTTTGCTGATTTAGATTTACAAGTTGCTGTGAAGAAAATATCAAGAGGGTCAAGACAAGGTAAGAAAGAGTATGTAACTGAAGTTAAAGTCATTAGTCAACTGAGACATAGGAATCTTGTGAAGCTCTTAGGTTGGTGCCATGACAAAGGTGAGTTTCTACTTGTTTATGAGTTCATGCCAAATGGTAGTCTTGATTCTCATTTATTTGGTAAAAGATCACCTCTTTCTTGGGGTGTAAGGCACAAAATAACTCTTGGATTGGCCTCTAGTTTGCTATATCTACATGAAGAATGGGAGAGGTGTGTGGTACATAGGGATATTAAATCAAGTAATGTTATGCTAGATTCTAGTTTCAATGTTAAGCTTGGTGACTTTGGGTTGGCTAAGCTAATGGACCATGAGATTGGACCCCAAACAACAGTGGTGGCTGGAACCTTGGGCTATTTGGCGCCAGAATACGCAAGTACAGGTAAGGCTAGGAAAGAGTCGGATGTATATAGTTTTGGGGTTGTTGTCTTGGAGATCACAACTGGAAGGAAAGCTGTTGAAGTAACGAAGGAACAAGATGAAGATAAGGGGTTGATTGAGTGGGTTTGGGATCATTATGGAAGAGGAGAACTACTTGTGACCATAGATGAGAATTTGCAAAAGGATTTTGATGTGAAACAAGCAGAGTGTTTGTTGATTGTTGGATTATGGTGTGCTCATCCTGATGTAAATCTTAGACCAACAATTAGACAAGCAATTCAAGTGCTTAATTTTGAGGTTGCCTTGCCAAATCTTCCACCAAAGAAGCCTGTTGCAACTTATCTTGCTCCTGCAACACCTATAAGCTCAGAAGAAGCTTCCATAACCACGAGCCTAGAGAATGGTCGTTAA

Protein sequence

>MS.gene66005.t1

MAPSFYTVSLFFFAFIFFTFPSNSIHFQITSFNPNDANILYQGSAAPRDGKVDFNIYEIEKYPFQVGRAMYSKEVLLWDSKTGQVTDFKTHYTFIIDTQNASEYGHGLAFFMAPFGFEIPPNSATAFLGLFNTTTKVSSSNQIVLVEFDSYINGKWGETTEHVGININSIITSVSTPWNASLHSGDIAEVWISFNSTTKNLTVSWKYQRTSNPQEKTSLSYEIDLIKVLPEWVTIGFSASIGNIRELNTLLSWEFNSTLEKSDDNKETRLVIILTVSLGVVIIGVGALVAYVILRRKIKRSKMQKDVIHLTSMNHDLERGAGPRRFTYEELDMATNNFTSDRKLGQGGFGAVYKGYFADLDLQVAVKKISRGSRQGKKEYVTEVKVISQLRHRNLVKLLGWCHDKGEFLLVYEFMPNGSLDSHLFGKRSPLSWGVRHKITLGLASSLLYLHEEWERCVVHRDIKSSNVMLDSSFNVKLGDFGLAKLMDHEIGPQTTVVAGTLGYLAPEYASTGKARKESDVYSFGVVVLEITTGRKAVEVTKEQDEDKGLIEWVWDHYGRGELLVTIDENLQKDFDVKQAECLLIVGLWCAHPDVNLRPTIRQAIQVLNFEVALPNLPPKKPVATYLAPATPISSEEASITTSLENGR