AlfalfaGEDB | MS.gene66010

M. sativa cultivar XinJiangDaYe / MS.gene66010

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030246 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF00139.22

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66010.t1	XP_003628861.1	90	651	59	4	1	645	1	651	0.00E+00	1139.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66010.t1	Q9LXA5	58.5	650	258	8	6	645	4	651	2.4e-201	703.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66010.t1	G7LIH1	90.0	651	59	4	1	645	1	651	0.0e+00	1139.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene000818	MS.gene66010	PPI
MS.gene000819	MS.gene66010	PPI
MS.gene000820	MS.gene66010	PPI
MS.gene000823	MS.gene66010	PPI
MS.gene000826	MS.gene66010	PPI
MS.gene000829	MS.gene66010	PPI
MS.gene000830	MS.gene66010	PPI
MS.gene000832	MS.gene66010	PPI
MS.gene035518	MS.gene66010	PPI
MS.gene055222	MS.gene66010	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66010.t1	MTR_8g067930	93.702	651	35	4	1	645	1	651	0.0	1247
MS.gene66010.t1	MTR_8g067735	84.485	651	95	4	1	645	20	670	0.0	1129
MS.gene66010.t1	MTR_8g067720	79.416	651	127	4	1	645	1	650	0.0	1068
MS.gene66010.t1	MTR_8g067690	78.503	628	114	3	20	645	59	667	0.0	1007
MS.gene66010.t1	MTR_8g067630	75.159	628	99	3	19	645	28	599	0.0	971
MS.gene66010.t1	MTR_8g068050	53.145	636	281	10	3	626	16	646	0.0	641
MS.gene66010.t1	MTR_4g093080	49.454	641	293	10	4	623	7	637	0.0	613
MS.gene66010.t1	MTR_4g093040	49.224	644	287	14	19	633	31	663	0.0	540
MS.gene66010.t1	MTR_4g093070	49.400	583	279	9	60	632	71	647	0.0	539
MS.gene66010.t1	MTR_4g093040	51.190	588	253	12	71	633	3	581	2.28e-179	521

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66010.t1	AT5G10530	58.626	626	249	7	6	624	4	626	0.0	744
MS.gene66010.t1	AT5G65600	53.710	620	266	10	20	624	34	647	0.0	644
MS.gene66010.t1	AT3G53810	37.520	621	355	10	18	616	21	630	2.09e-128	394
MS.gene66010.t1	AT2G37710	37.966	590	322	11	54	616	57	629	1.37e-127	392
MS.gene66010.t1	AT5G06740	36.641	655	369	18	10	640	9	641	7.46e-125	384
MS.gene66010.t1	AT5G06740	36.641	655	369	18	10	640	21	653	9.20e-125	384
MS.gene66010.t1	AT4G02420	35.881	641	367	10	5	616	7	632	1.06e-121	376
MS.gene66010.t1	AT4G02410	35.795	623	368	9	18	616	23	637	2.62e-121	375
MS.gene66010.t1	AT4G29050	37.716	578	320	10	61	612	60	623	5.91e-121	374
MS.gene66010.t1	AT4G29050	37.716	578	320	10	61	612	74	637	8.15e-121	374

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Find 148 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAACACCTCTTTCTTG+GGG	0.587540	8.1:+37006744	MS.gene66010:CDS
AAACTAATGGACCATGAACT+TGG	0.407618	8.1:+37006918	MS.gene66010:CDS
AAAGAGAAGTGAAAAGCAAA+AGG	0.394219	8.1:+37006356	MS.gene66010:CDS
AAAGAGGAGCAGGGCCAAGA+AGG	0.500525	8.1:+37006418	MS.gene66010:CDS
AAATCAACTTCTCCATCAAC+TGG	0.461610	8.1:-37005604	None:intergenic
AACTAATGGACCATGAACTT+GGG	0.583162	8.1:+37006919	MS.gene66010:CDS
AACTCCTCTGGTGGCTTGAT+GGG	0.378931	8.1:+37005820	MS.gene66010:CDS
AACTTGGGCCTCAAACAACG+GGG	0.727611	8.1:+37006934	MS.gene66010:CDS
AAGAGAAGGGAATGATTGAG+TGG	0.552583	8.1:+37007102	MS.gene66010:CDS
AAGATTATTTACTTCTCCAA+TGG	0.485018	8.1:-37006184	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAGAAGTGAAAAGCAAA+AGG	+	chr8.1:37006356-37006375	MS.gene66010:CDS	30.0%
AAGGAAAAAGATGAAGAGAA+GGG	+	chr8.1:37007089-37007108	MS.gene66010:CDS	30.0%
AAGTGAAGAAAATGAAGAAG+AGG	-	chr8.1:37005504-37005523	None:intergenic	30.0%
AATTCAAGTGCTTAATTTCG+AGG	+	chr8.1:37007277-37007296	MS.gene66010:CDS	30.0%
AGTGAAGAAAATGAAGAAGA+GGG	-	chr8.1:37005503-37005522	None:intergenic	30.0%
ATTTATGAGTTCATGCCAAA+TGG	+	chr8.1:37006696-37006715	MS.gene66010:CDS	30.0%
CAAGAATTTGACTGTATCTT+GGG	+	chr8.1:37006050-37006069	MS.gene66010:CDS	30.0%
CACTTACAAAGAACTTGATT+TGG	+	chr8.1:37006443-37006462	MS.gene66010:CDS	30.0%
GCTTCATTTGGATTAAAACT+AGG	-	chr8.1:37005556-37005575	None:intergenic	30.0%
GCTTTATCTACATGAAGAAT+GGG	+	chr8.1:37006806-37006825	MS.gene66010:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.1	gene	37005475	37007412	37005475	ID=MS.gene66010
chr8.1	mRNA	37005475	37007412	37005475	ID=MS.gene66010.t1;Parent=MS.gene66010
chr8.1	exon	37005475	37007412	37005475	ID=MS.gene66010.t1.exon1;Parent=MS.gene66010.t1
chr8.1	CDS	37005475	37007412	37005475	ID=cds.MS.gene66010.t1;Parent=MS.gene66010.t1

Gene Sequence

>MS.gene66010

ATGGCTTCCAGTTTCTCTATCCTTCCCCTCTTCTTCATTTTCTTCACTTTCACTGCTAATTCAATTCACTTCCAAATTCCTAGTTTTAATCCAAATGAAGCCAACATAATCTACCAAGGTTCTGCAGCACCAGTTGATGGAGAAGTTGATTTCAACATCAATAATTATGTATGTCAAGTTGGATGGGCCATGTATTCCAAAAAGGTATTACTTTGGGACTCAAAAACAGGTCAACTCACTGACTTCACAACTCATTACACTTTTATCATCAACACTCAAGATAGACCTTCATATGGCCATGGACTTGCCTTTTTCTTAGCTGCTTATGGATTTGAAATCCCACCTAACTCCTCTGGTGGCTTGATGGGTCTATTTAACACCACAACAATGCTTTCATCTAGTAACCAAATTGTTCATGTCGAGTTTGATTCGTACCCAAATGTTGAATGGGATGAGACAACACAACATGTGGGAATCAACAATAATTCAATCAAATCATCGATATCAACACCTTGGAATGCAAGTTTACACAGTGGAGACACTGCTGAGGTATGGATTAGGTACAATTCTACAACCAAGAATTTGACTGTATCTTGGGAATATCAAACCACCTCTAGTCCTCAAGAAAAAACTAATCTTTCATATCAAATTGATTTGATGAAAGTTTTACCTGAATGGGTTACAATTGGATTTTCTGCAGCAACTGGTTCCATTGGAGAAGTAAATAATCTTTTGTCATGGGAATTTAGTTCCACTTTGGAGAAAAGTGATGATAGTAATAGTAAAGAGACAAGATTAGTTGTGATACTAACAGTCTCTTTGGGGATTGTAATTATAGGAGTGGGAGCATTGGTAGCATATGTAATACTAAAGAGGAAAAGAAAGAGAAGTGAAAAGCAAAAGGAAGAGGCTATGCATTTGACTTCAATGAATGATGACCTTGAAAGAGGAGCAGGGCCAAGAAGGTTCACTTACAAAGAACTTGATTTGGCAACCAATAACTTCTCTAAGGATAGAAAGTTGGGTCAAGGTGGGTTTGGAGCGGTTTATAAAGGTTACTTTGCTGATTTAGATTTACAAGTTGCTGTGAAGAAAATATCAAGAGGATCAAGACAAGGTAAGAAAGAGTATGTCACTGAAGTTAAAGTCATTAGTCAACTGAGACATAGGAATCTTGTGAAGCTCTTAGGTTGGTGCCATGACAAAGGTGAGTTTCTACTTATTTATGAGTTCATGCCAAATGGTAGTCTTGATTCTCATTTATTTGGTAAAAGAACACCTCTTTCTTGGGGTTTAAGGCACAAAATAACTCTTGGATTGGCCTCCGGTTTGCTTTATCTACATGAAGAATGGGAGAGGTGTGTGGTACATAGGGATATTAAATCAAGTAATGTTATGTTAGATTCTAGTTTTAATGTCAAGCTTGGTGATTTTGGGTTGGCTAAACTAATGGACCATGAACTTGGGCCTCAAACAACGGGGCTGGCCGGAACATTCGGATATCTTGCACCAGAATATGTGAGTACAGGTAGGGCAAGTAAAGAGTCGGATGTGTATAGTTTTGGCATAGTTGTCTTGGAGATAACTACTGGTAAGAAAGCTACTGAAGTTATGAAGGAAAAAGATGAAGAGAAGGGAATGATTGAGTGGGTTTGGGATCATTATGGAAGAGAAGAACTACTTGTGGCCATGGATGAGAATTTGAGGAAAGATTTTGATGAGAAACAAGTAGAGTGCTTGATGATTGTTGGATTATGGTGTGCTCATCCTGATGTTAGTCTAAGACCATCAATTAGACAAGCAATTCAAGTGCTTAATTTCGAGGTTTCCATGCCAAAACTTCCACCAAAAAGGCCAGTTGCAACCTATCATGCTCCTACGCCATCTGTAAGCTCCGTAGAAGCTTCCATAACCAATAGCCTTCAAGATGGTCGTTAA

Protein sequence

>MS.gene66010.t1

MASSFSILPLFFIFFTFTANSIHFQIPSFNPNEANIIYQGSAAPVDGEVDFNINNYVCQVGWAMYSKKVLLWDSKTGQLTDFTTHYTFIINTQDRPSYGHGLAFFLAAYGFEIPPNSSGGLMGLFNTTTMLSSSNQIVHVEFDSYPNVEWDETTQHVGINNNSIKSSISTPWNASLHSGDTAEVWIRYNSTTKNLTVSWEYQTTSSPQEKTNLSYQIDLMKVLPEWVTIGFSAATGSIGEVNNLLSWEFSSTLEKSDDSNSKETRLVVILTVSLGIVIIGVGALVAYVILKRKRKRSEKQKEEAMHLTSMNDDLERGAGPRRFTYKELDLATNNFSKDRKLGQGGFGAVYKGYFADLDLQVAVKKISRGSRQGKKEYVTEVKVISQLRHRNLVKLLGWCHDKGEFLLIYEFMPNGSLDSHLFGKRTPLSWGLRHKITLGLASGLLYLHEEWERCVVHRDIKSSNVMLDSSFNVKLGDFGLAKLMDHELGPQTTGLAGTFGYLAPEYVSTGRASKESDVYSFGIVVLEITTGKKATEVMKEKDEEKGMIEWVWDHYGREELLVAMDENLRKDFDEKQVECLMIVGLWCAHPDVSLRPSIRQAIQVLNFEVSMPKLPPKRPVATYHAPTPSVSSVEASITNSLQDGR