Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66054.t1 | KEH22820.1 | 99.3 | 295 | 2 | 0 | 1 | 295 | 1 | 295 | 3.40E-162 | 580.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66054.t1 | Q8GXU5 | 65.1 | 292 | 95 | 3 | 9 | 295 | 17 | 306 | 1.9e-105 | 383.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66054.t1 | A0A072UAH2 | 99.3 | 295 | 2 | 0 | 1 | 295 | 1 | 295 | 2.5e-162 | 580.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050807 | MS.gene66054 | 0.820685 | 6.02E-53 | -1.69E-46 |
| MS.gene051243 | MS.gene66054 | 0.810862 | 9.33E-51 | -1.69E-46 |
| MS.gene052426 | MS.gene66054 | 0.806118 | 9.61E-50 | -1.69E-46 |
| MS.gene053188 | MS.gene66054 | 0.816093 | 6.61E-52 | -1.69E-46 |
| MS.gene054537 | MS.gene66054 | 0.814063 | 1.86E-51 | -1.69E-46 |
| MS.gene05510 | MS.gene66054 | 0.806918 | 6.52E-50 | -1.69E-46 |
| MS.gene058055 | MS.gene66054 | 0.804913 | 1.72E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66054.t1 | MTR_7g059010 | 99.322 | 295 | 2 | 0 | 1 | 295 | 1 | 295 | 0.0 | 605 |
| MS.gene66054.t1 | MTR_7g059010 | 98.983 | 295 | 3 | 0 | 1 | 295 | 18 | 312 | 0.0 | 602 |
| MS.gene66054.t1 | MTR_7g058930 | 76.491 | 285 | 67 | 0 | 11 | 295 | 16 | 300 | 1.08e-166 | 464 |
| MS.gene66054.t1 | MTR_8g075260 | 53.731 | 268 | 111 | 3 | 15 | 274 | 32 | 294 | 2.53e-94 | 287 |
| MS.gene66054.t1 | MTR_2g030510 | 54.286 | 245 | 109 | 1 | 15 | 256 | 47 | 291 | 2.05e-85 | 268 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66054.t1 | AT5G48850 | 65.068 | 292 | 95 | 3 | 9 | 295 | 17 | 306 | 3.49e-134 | 382 |
| MS.gene66054.t1 | AT1G04770 | 58.885 | 287 | 105 | 5 | 19 | 295 | 20 | 303 | 1.39e-115 | 335 |
| MS.gene66054.t1 | AT3G51280 | 55.385 | 260 | 111 | 2 | 19 | 274 | 30 | 288 | 1.46e-93 | 283 |
| MS.gene66054.t1 | AT4G20900 | 53.469 | 245 | 106 | 2 | 10 | 248 | 42 | 284 | 2.64e-84 | 260 |
| MS.gene66054.t1 | AT4G20900 | 50.192 | 261 | 106 | 3 | 10 | 248 | 42 | 300 | 4.45e-80 | 249 |
| MS.gene66054.t1 | AT5G44330 | 52.489 | 221 | 102 | 1 | 24 | 241 | 49 | 269 | 8.47e-68 | 218 |
| MS.gene66054.t1 | AT5G22794 | 65.672 | 67 | 23 | 0 | 96 | 162 | 71 | 137 | 5.39e-23 | 95.1 |
| MS.gene66054.t1 | AT5G22794 | 56.716 | 67 | 22 | 1 | 96 | 162 | 71 | 130 | 2.52e-16 | 76.3 |
Find 49 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTAAGTTTATGGATGATTT+AGG | 0.100877 | 7.3:+45834089 | MS.gene66054:CDS |
| CTTGCCACAGCCTAAGTTTA+TGG | 0.132259 | 7.3:+45834079 | MS.gene66054:CDS |
| CTTTGTCGTCCTTCCATTAA+AGG | 0.194578 | 7.3:-45832149 | None:intergenic |
| CTAAGTTTATGGATGATTTA+GGG | 0.285480 | 7.3:+45834090 | MS.gene66054:CDS |
| GTTATTCATAAGGTTCCTTA+TGG | 0.304411 | 7.3:+45830797 | MS.gene66054:CDS |
| TACCAAGGTGAGGCCTTTAA+TGG | 0.310819 | 7.3:+45832136 | MS.gene66054:CDS |
| AACTTGTTCAAGAATTAAAT+AGG | 0.323980 | 7.3:-45833976 | None:intergenic |
| TTGATGGATTACTTAATGTT+TGG | 0.342938 | 7.3:+45834138 | MS.gene66054:CDS |
| AAGTTGCTATAGTGTACTTT+TGG | 0.357890 | 7.3:+45831542 | MS.gene66054:CDS |
| AGTACCTACCTGAGCATGTT+TGG | 0.360029 | 7.3:-45830840 | None:intergenic |
| AAGTACACTATAGCAACTTC+TGG | 0.375170 | 7.3:-45831538 | None:intergenic |
| GGATAGTGCTCTAAAGGATA+TGG | 0.385948 | 7.3:+45831591 | MS.gene66054:CDS |
| GCATGTTTGGCTTTGACATA+AGG | 0.405107 | 7.3:-45830827 | None:intergenic |
| TCTCTATCATGTTATTCATA+AGG | 0.406833 | 7.3:+45830787 | MS.gene66054:CDS |
| AGAAGATATTTCCTCAAAGA+TGG | 0.410475 | 7.3:-45834186 | None:intergenic |
| ATTGATTGTTTAGGGAAACT+TGG | 0.415231 | 7.3:+45833818 | MS.gene66054:intron |
| TGTTTAGGGAAACTTGGGTT+GGG | 0.416088 | 7.3:+45833824 | MS.gene66054:intron |
| ATCCATCAATTCCTTTCAAA+AGG | 0.416312 | 7.3:-45834124 | None:intergenic |
| AAGAAGACTTCCCATCTTTG+AGG | 0.419105 | 7.3:+45834175 | MS.gene66054:CDS |
| GGAAGTCTTCTTGATCTAGT+TGG | 0.437256 | 7.3:-45834164 | None:intergenic |
| GGCTAAATTCAAAGCCTTGT+TGG | 0.440956 | 7.3:-45833919 | None:intergenic |
| CAAAGTGGATAGTGCTCTAA+AGG | 0.448477 | 7.3:+45831585 | MS.gene66054:CDS |
| GCAAGAAACAGCAAGACTAT+TGG | 0.460999 | 7.3:+45832213 | MS.gene66054:CDS |
| TTTCTTGCTTGATAGAAACT+TGG | 0.480530 | 7.3:-45832198 | None:intergenic |
| AGATTGTCTCATTAAGCATA+AGG | 0.492447 | 7.3:-45833940 | None:intergenic |
| TGTCAAAGCCAAACATGCTC+AGG | 0.496739 | 7.3:+45830832 | MS.gene66054:CDS |
| ACAAAGACTGCTCGCTCTCA+TGG | 0.512305 | 7.3:+45832166 | MS.gene66054:CDS |
| AATGAGACAATCTCGTTATG+AGG | 0.514397 | 7.3:+45833950 | MS.gene66054:CDS |
| TTGTTTAGGGAAACTTGGGT+TGG | 0.515491 | 7.3:+45833823 | MS.gene66054:intron |
| TCAGAAATGTGGAAGAATAG+AGG | 0.535352 | 7.3:+45832075 | MS.gene66054:intron |
| GAAGATATTTCCTCAAAGAT+GGG | 0.535613 | 7.3:-45834185 | None:intergenic |
| TGTACTTCTTGATCTTTACA+AGG | 0.536497 | 7.3:+45831714 | MS.gene66054:CDS |
| TTGATTGTTTAGGGAAACTT+GGG | 0.545737 | 7.3:+45833819 | MS.gene66054:intron |
| ACATAAGGAGTATCACCATA+AGG | 0.554287 | 7.3:-45830812 | None:intergenic |
| CCTAAATCATCCATAAACTT+AGG | 0.561979 | 7.3:-45834089 | None:intergenic |
| GTATTGAAGAAAAGTTCTAA+AGG | 0.565096 | 7.3:+45830752 | MS.gene66054:CDS |
| GACTTGATTTCATCAGAACC+TGG | 0.565428 | 7.3:-45834014 | None:intergenic |
| AAACTTAGGCTGTGGCAAGT+TGG | 0.567446 | 7.3:-45834075 | None:intergenic |
| TCATCCATAAACTTAGGCTG+TGG | 0.592007 | 7.3:-45834083 | None:intergenic |
| AAACTACATGATGGCTGAGG+TGG | 0.597629 | 7.3:+45833863 | MS.gene66054:CDS |
| GCAAAAGACAAACTACATGA+TGG | 0.600357 | 7.3:+45833854 | MS.gene66054:CDS |
| TTCCATTAAAGGCCTCACCT+TGG | 0.605669 | 7.3:-45832138 | None:intergenic |
| GATAGATGCTGATGCCAACA+AGG | 0.611933 | 7.3:+45833905 | MS.gene66054:CDS |
| AAGGTGAGGCCTTTAATGGA+AGG | 0.621345 | 7.3:+45832140 | MS.gene66054:CDS |
| AATCAATGCTGGAGACAAAG+TGG | 0.650220 | 7.3:+45831570 | MS.gene66054:CDS |
| CATATACAGAGAGAAATGGA+AGG | 0.651435 | 7.3:+45830722 | None:intergenic |
| GACAAACTACATGATGGCTG+AGG | 0.652612 | 7.3:+45833860 | MS.gene66054:CDS |
| AAGCTAAGACTTATCTACCA+AGG | 0.663143 | 7.3:+45832121 | MS.gene66054:CDS |
| AAGACTTATCTACCAAGGTG+AGG | 0.669025 | 7.3:+45832126 | MS.gene66054:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTAAAATAAAATAATA+TGG | + | chr7.3:45833568-45833587 | MS.gene66054:intron | 0.0% |
| !!! | TATTATTTTATTTTAAAATT+TGG | - | chr7.3:45833568-45833587 | None:intergenic | 0.0% |
| !! | AAAATCAAATACTATATAAA+AGG | - | chr7.3:45832931-45832950 | None:intergenic | 10.0% |
| !! | AAATTTACTTATATATGAAT+TGG | + | chr7.3:45832904-45832923 | MS.gene66054:intron | 10.0% |
| !! | GAATAACTTAAAAATAAAAA+AGG | - | chr7.3:45831329-45831348 | None:intergenic | 10.0% |
| !!! | AAATACAAAAAATTTGTTTT+AGG | - | chr7.3:45833594-45833613 | None:intergenic | 10.0% |
| !!! | GTTTATCAATATTTTTTTAA+AGG | - | chr7.3:45833416-45833435 | None:intergenic | 10.0% |
| !!! | TTGTAAAAATGATTATTTTT+GGG | + | chr7.3:45833743-45833762 | MS.gene66054:intron | 10.0% |
| !!! | TTTGTAAAAATGATTATTTT+TGG | + | chr7.3:45833742-45833761 | MS.gene66054:intron | 10.0% |
| !! | AATTTAGAGATCAAATTAAA+AGG | - | chr7.3:45830958-45830977 | None:intergenic | 15.0% |
| !! | ACATGTTGTAATATTTATTT+GGG | - | chr7.3:45833371-45833390 | None:intergenic | 15.0% |
| !! | ATTTACACAAAAACTAAATT+AGG | - | chr7.3:45832056-45832075 | None:intergenic | 15.0% |
| !! | ATTTAGAGATCAAATTAAAA+GGG | - | chr7.3:45830957-45830976 | None:intergenic | 15.0% |
| !! | TAAGAAAAATAGTGTATAAT+AGG | - | chr7.3:45831261-45831280 | None:intergenic | 15.0% |
| !! | TTATATTGTTCAAATATTAC+CGG | - | chr7.3:45832428-45832447 | None:intergenic | 15.0% |
| !!! | AACGTAATATTTTAATATCA+AGG | + | chr7.3:45833236-45833255 | MS.gene66054:intron | 15.0% |
| !!! | AATATTTTTGGTACAAAATT+TGG | - | chr7.3:45831191-45831210 | None:intergenic | 15.0% |
| !!! | AATGATTCTTTTTTATATCT+AGG | + | chr7.3:45833776-45833795 | MS.gene66054:intron | 15.0% |
| !!! | ACAATAACTCTTTTAAAATA+GGG | + | chr7.3:45833132-45833151 | MS.gene66054:intron | 15.0% |
| !!! | ATATATAAGTAAATTTTGCA+AGG | - | chr7.3:45832900-45832919 | None:intergenic | 15.0% |
| !!! | CAAATAAATATTTTTACAAG+AGG | + | chr7.3:45833627-45833646 | MS.gene66054:intron | 15.0% |
| !!! | TAATTTTTTAACATTATCAC+CGG | - | chr7.3:45831921-45831940 | None:intergenic | 15.0% |
| !! | AATATAATGAAACACATGTT+TGG | - | chr7.3:45831745-45831764 | None:intergenic | 20.0% |
| !! | ACAACTTTCATATAAAATGT+CGG | + | chr7.3:45832004-45832023 | MS.gene66054:intron | 20.0% |
| !! | ACAATAAGTAAGTACATATA+AGG | + | chr7.3:45833164-45833183 | MS.gene66054:intron | 20.0% |
| !! | AGATAAAGGACTAAATAAAT+AGG | + | chr7.3:45832969-45832988 | MS.gene66054:intron | 20.0% |
| !! | AGGATGAAAAGTAAAAATAT+TGG | - | chr7.3:45832832-45832851 | None:intergenic | 20.0% |
| !! | ATAAAGGACTAAATAAATAG+GGG | + | chr7.3:45832971-45832990 | MS.gene66054:intron | 20.0% |
| !! | CAAAATGTAGTATATTTACA+AGG | - | chr7.3:45832852-45832871 | None:intergenic | 20.0% |
| !! | CAAATAAATATTACAACATG+TGG | + | chr7.3:45833370-45833389 | MS.gene66054:intron | 20.0% |
| !! | CACATGTTGTAATATTTATT+TGG | - | chr7.3:45833372-45833391 | None:intergenic | 20.0% |
| !! | CATGTTGTAATATTTATTTG+GGG | - | chr7.3:45833370-45833389 | None:intergenic | 20.0% |
| !! | GATAAAGGACTAAATAAATA+GGG | + | chr7.3:45832970-45832989 | MS.gene66054:intron | 20.0% |
| !! | GATGAAAAGTAAAAATATTG+GGG | - | chr7.3:45832830-45832849 | None:intergenic | 20.0% |
| !! | GATGTTCAATTATCATATTA+TGG | + | chr7.3:45831774-45831793 | MS.gene66054:intron | 20.0% |
| !! | GGATGAAAAGTAAAAATATT+GGG | - | chr7.3:45832831-45832850 | None:intergenic | 20.0% |
| !! | TATATTGTTCAAATATTACC+GGG | - | chr7.3:45832427-45832446 | None:intergenic | 20.0% |
| !! | TGACTTTAAATTGATGTATA+TGG | + | chr7.3:45831032-45831051 | MS.gene66054:intron | 20.0% |
| !! | TTAATATGCATTATTGTATG+TGG | + | chr7.3:45830913-45830932 | MS.gene66054:intron | 20.0% |
| !!! | AACTTGTTCAAGAATTAAAT+AGG | - | chr7.3:45833979-45833998 | None:intergenic | 20.0% |
| !!! | ATTTTGCTTATATTTTGGTA+CGG | + | chr7.3:45831225-45831244 | MS.gene66054:intron | 20.0% |
| !!! | CACAATAACTCTTTTAAAAT+AGG | + | chr7.3:45833131-45833150 | MS.gene66054:intron | 20.0% |
| !!! | CTCAAAAAGACAAATATTTT+TGG | - | chr7.3:45831203-45831222 | None:intergenic | 20.0% |
| !!! | TAATTTACTATTACCTTTTC+AGG | + | chr7.3:45831074-45831093 | MS.gene66054:intron | 20.0% |
| !!! | TTCTACTTTTTTACATTCTT+TGG | + | chr7.3:45831363-45831382 | MS.gene66054:intron | 20.0% |
| ! | AACACTTTGATTGATTGTTT+AGG | + | chr7.3:45833809-45833828 | MS.gene66054:intron | 25.0% |
| ! | AACTTGAATCAACATATGTT+TGG | - | chr7.3:45832306-45832325 | None:intergenic | 25.0% |
| ! | ACAATAAGTAAGTCTATTGA+AGG | + | chr7.3:45833196-45833215 | MS.gene66054:intron | 25.0% |
| ! | ACACTTTGATTGATTGTTTA+GGG | + | chr7.3:45833810-45833829 | MS.gene66054:intron | 25.0% |
| ! | ATGAAAATCAAAAACATTGC+AGG | + | chr7.3:45833438-45833457 | MS.gene66054:intron | 25.0% |
| ! | CAAATTAAAAGGGATAAAGA+TGG | - | chr7.3:45830947-45830966 | None:intergenic | 25.0% |
| ! | CTAAGTTTATGGATGATTTA+GGG | + | chr7.3:45834090-45834109 | MS.gene66054:CDS | 25.0% |
| ! | CTTGTATGATCTATATTGTA+GGG | - | chr7.3:45832460-45832479 | None:intergenic | 25.0% |
| ! | TATGTTATATTGATCAGTTC+TGG | + | chr7.3:45830979-45830998 | MS.gene66054:intron | 25.0% |
| ! | TCTCTATCATGTTATTCATA+AGG | + | chr7.3:45830787-45830806 | MS.gene66054:CDS | 25.0% |
| ! | TTACAATTTCGATACATTGA+GGG | + | chr7.3:45833297-45833316 | MS.gene66054:intron | 25.0% |
| ! | TTTAAAGGTAGTCAATGATT+TGG | - | chr7.3:45833401-45833420 | None:intergenic | 25.0% |
| ! | TTTACAATTTCGATACATTG+AGG | + | chr7.3:45833296-45833315 | MS.gene66054:intron | 25.0% |
| !! | AATGTTTTTCTTCAACACAA+TGG | + | chr7.3:45833695-45833714 | MS.gene66054:intron | 25.0% |
| !! | GTATTGAAGAAAAGTTCTAA+AGG | + | chr7.3:45830752-45830771 | MS.gene66054:CDS | 25.0% |
| !! | TTTTGTGTAAATCAGAAATG+TGG | + | chr7.3:45832064-45832083 | MS.gene66054:intron | 25.0% |
| !!! | ATCTTCTTTTAGAGATCAAT+TGG | + | chr7.3:45834202-45834221 | MS.gene66054:CDS | 25.0% |
| !!! | GAGTCATTTTGCTTATATTT+TGG | + | chr7.3:45831220-45831239 | MS.gene66054:intron | 25.0% |
| !!! | GCAATGTTTTTGATTTTCAT+TGG | - | chr7.3:45833438-45833457 | None:intergenic | 25.0% |
| !!! | TCCATGTACGAATATTTTTA+GGG | + | chr7.3:45832533-45832552 | MS.gene66054:intron | 25.0% |
| !!! | TTGAAATTTTGACACATTGA+AGG | - | chr7.3:45833044-45833063 | None:intergenic | 25.0% |
| !!! | TTGATGGATTACTTAATGTT+TGG | + | chr7.3:45834138-45834157 | MS.gene66054:CDS | 25.0% |
| AATCCTTGAATTCAGATTCA+AGG | - | chr7.3:45831289-45831308 | None:intergenic | 30.0% | |
| ACTAACAAAGTACACAATCA+GGG | + | chr7.3:45833268-45833287 | MS.gene66054:intron | 30.0% | |
| ACTAACAAAGTCTACATTCA+GGG | - | chr7.3:45832636-45832655 | None:intergenic | 30.0% | |
| ACTAACAAAGTGGACATTTA+GGG | - | chr7.3:45833073-45833092 | None:intergenic | 30.0% | |
| AGAAGATATTTCCTCAAAGA+TGG | - | chr7.3:45834189-45834208 | None:intergenic | 30.0% | |
| AGATTGTCTCATTAAGCATA+AGG | - | chr7.3:45833943-45833962 | None:intergenic | 30.0% | |
| ATCCATCAATTCCTTTCAAA+AGG | - | chr7.3:45834127-45834146 | None:intergenic | 30.0% | |
| ATTCCTTGAATCTGAATTCA+AGG | + | chr7.3:45831283-45831302 | MS.gene66054:intron | 30.0% | |
| ATTGATTGTTTAGGGAAACT+TGG | + | chr7.3:45833818-45833837 | MS.gene66054:intron | 30.0% | |
| CAGAAAAAAAACAGTATTGC+AGG | - | chr7.3:45832507-45832526 | None:intergenic | 30.0% | |
| CCTAAATCATCCATAAACTT+AGG | - | chr7.3:45834092-45834111 | None:intergenic | 30.0% | |
| CCTAAGTTTATGGATGATTT+AGG | + | chr7.3:45834089-45834108 | MS.gene66054:CDS | 30.0% | |
| CCTACAATATAGATCATACA+AGG | + | chr7.3:45832458-45832477 | MS.gene66054:intron | 30.0% | |
| CCTTGTATGATCTATATTGT+AGG | - | chr7.3:45832461-45832480 | None:intergenic | 30.0% | |
| GAAGATATTTCCTCAAAGAT+GGG | - | chr7.3:45834188-45834207 | None:intergenic | 30.0% | |
| GTTATTCATAAGGTTCCTTA+TGG | + | chr7.3:45830797-45830816 | MS.gene66054:CDS | 30.0% | |
| TCAATGTGTATGAAATCAGT+TGG | + | chr7.3:45831504-45831523 | MS.gene66054:intron | 30.0% | |
| TGCCTGTATTCTGTTATAAA+GGG | - | chr7.3:45831134-45831153 | None:intergenic | 30.0% | |
| TGTACTTCTTGATCTTTACA+AGG | + | chr7.3:45831714-45831733 | MS.gene66054:CDS | 30.0% | |
| TTGATTGTTTAGGGAAACTT+GGG | + | chr7.3:45833819-45833838 | MS.gene66054:intron | 30.0% | |
| TTGCAATTTATCTGCATTCA+GGG | - | chr7.3:45832607-45832626 | None:intergenic | 30.0% | |
| TTGCAATTTCTCTTCATTCA+GGG | + | chr7.3:45832757-45832776 | MS.gene66054:intron | 30.0% | |
| TTTCTTGCTTGATAGAAACT+TGG | - | chr7.3:45832201-45832220 | None:intergenic | 30.0% | |
| TTTGCAATTTATCTGCATTC+AGG | - | chr7.3:45832608-45832627 | None:intergenic | 30.0% | |
| TTTGCAATTTCTCTTCATTC+AGG | + | chr7.3:45832756-45832775 | MS.gene66054:intron | 30.0% | |
| ! | AAGTTGCTATAGTGTACTTT+TGG | + | chr7.3:45831542-45831561 | MS.gene66054:CDS | 30.0% |
| ! | ATTCTTGAACAAGTTTTGCA+AGG | + | chr7.3:45833984-45834003 | MS.gene66054:CDS | 30.0% |
| ! | GAAGCTATCAAATCTTTTAG+AGG | + | chr7.3:45831655-45831674 | MS.gene66054:CDS | 30.0% |
| ! | GTCCATGTACGAATATTTTT+AGG | + | chr7.3:45832532-45832551 | MS.gene66054:intron | 30.0% |
| !! | CAGTCTATGTTGTTTCATAT+TGG | + | chr7.3:45831835-45831854 | MS.gene66054:intron | 30.0% |
| !!! | CCATGTACGAATATTTTTAG+GGG | + | chr7.3:45832534-45832553 | MS.gene66054:intron | 30.0% |
| AACAGAATACAGGCAGTAAA+AGG | + | chr7.3:45831139-45831158 | MS.gene66054:intron | 35.0% | |
| AAGCTAAGACTTATCTACCA+AGG | + | chr7.3:45832121-45832140 | MS.gene66054:CDS | 35.0% | |
| AAGTACACTATAGCAACTTC+TGG | - | chr7.3:45831541-45831560 | None:intergenic | 35.0% | |
| AATAGGGGTAATAGTCACTT+TGG | + | chr7.3:45832986-45833005 | MS.gene66054:intron | 35.0% | |
| AATGAGACAATCTCGTTATG+AGG | + | chr7.3:45833950-45833969 | MS.gene66054:CDS | 35.0% | |
| ACTAACAGAGTCTACATTCA+GGG | - | chr7.3:45832700-45832719 | None:intergenic | 35.0% | |
| ACTAACGAAGTTTGCATTCA+GGG | - | chr7.3:45832668-45832687 | None:intergenic | 35.0% | |
| ATGTGTATGAAATCAGTTGG+TGG | + | chr7.3:45831507-45831526 | MS.gene66054:intron | 35.0% | |
| CCCCTAAAAATATTCGTACA+TGG | - | chr7.3:45832537-45832556 | None:intergenic | 35.0% | |
| CTCCAATATGAGTGAGATAA+AGG | + | chr7.3:45832955-45832974 | MS.gene66054:intron | 35.0% | |
| CTCCCTTTATAACAGAATAC+AGG | + | chr7.3:45831129-45831148 | MS.gene66054:intron | 35.0% | |
| CTGCCTGTATTCTGTTATAA+AGG | - | chr7.3:45831135-45831154 | None:intergenic | 35.0% | |
| CTTTATCTCACTCATATTGG+AGG | - | chr7.3:45832957-45832976 | None:intergenic | 35.0% | |
| GACTAACAAAGTACACAATC+AGG | + | chr7.3:45833267-45833286 | MS.gene66054:intron | 35.0% | |
| GACTAACAAAGTCTACATTC+AGG | - | chr7.3:45832637-45832656 | None:intergenic | 35.0% | |
| GACTAACAAAGTGGACATTT+AGG | - | chr7.3:45833074-45833093 | None:intergenic | 35.0% | |
| GCAAAAGACAAACTACATGA+TGG | + | chr7.3:45833854-45833873 | MS.gene66054:CDS | 35.0% | |
| GTCCTTTATCTCACTCATAT+TGG | - | chr7.3:45832960-45832979 | None:intergenic | 35.0% | |
| TCAGAAATGTGGAAGAATAG+AGG | + | chr7.3:45832075-45832094 | MS.gene66054:intron | 35.0% | |
| TTACTTTGTCACTCCTGAAA+AGG | - | chr7.3:45831090-45831109 | None:intergenic | 35.0% | |
| ! | TGCTATAGTGTACTTTTGGA+AGG | + | chr7.3:45831546-45831565 | MS.gene66054:CDS | 35.0% |
| !! | ACATAAGGAGTATCACCATA+AGG | - | chr7.3:45830815-45830834 | None:intergenic | 35.0% |
| !! | GACCTTTTGAAAGGAATTGA+TGG | + | chr7.3:45834122-45834141 | MS.gene66054:CDS | 35.0% |
| !! | GTAGTTTGTCTTTTGCATGT+AGG | - | chr7.3:45833850-45833869 | None:intergenic | 35.0% |
| !!! | CTTGATGATGACCTTTTGAA+AGG | + | chr7.3:45834113-45834132 | MS.gene66054:CDS | 35.0% |
| !!! | GACTGTTTTGACTAACAAAG+TGG | - | chr7.3:45833083-45833102 | None:intergenic | 35.0% |
| !!! | TGACACTATTGTTTTAGTCC+CGG | + | chr7.3:45832406-45832425 | MS.gene66054:intron | 35.0% |
| AAGAAGACTTCCCATCTTTG+AGG | + | chr7.3:45834175-45834194 | MS.gene66054:CDS | 40.0% | |
| AAGACTTATCTACCAAGGTG+AGG | + | chr7.3:45832126-45832145 | MS.gene66054:CDS | 40.0% | |
| AATCAATGCTGGAGACAAAG+TGG | + | chr7.3:45831570-45831589 | MS.gene66054:CDS | 40.0% | |
| ACATTGCAGGTATATTTGCG+AGG | + | chr7.3:45833451-45833470 | MS.gene66054:intron | 40.0% | |
| ACCGAACATGATATTGACAC+CGG | + | chr7.3:45831899-45831918 | MS.gene66054:intron | 40.0% | |
| CAAAGTGGATAGTGCTCTAA+AGG | + | chr7.3:45831585-45831604 | MS.gene66054:CDS | 40.0% | |
| CTTTGTCGTCCTTCCATTAA+AGG | - | chr7.3:45832152-45832171 | None:intergenic | 40.0% | |
| GACTAACAGAGTCTACATTC+AGG | - | chr7.3:45832701-45832720 | None:intergenic | 40.0% | |
| GACTAACGAAGTTTGCATTC+AGG | - | chr7.3:45832669-45832688 | None:intergenic | 40.0% | |
| GACTTGATTTCATCAGAACC+TGG | - | chr7.3:45834017-45834036 | None:intergenic | 40.0% | |
| GCAAGAAACAGCAAGACTAT+TGG | + | chr7.3:45832213-45832232 | MS.gene66054:CDS | 40.0% | |
| GCCATGTGTCATGTCATATA+AGG | - | chr7.3:45831972-45831991 | None:intergenic | 40.0% | |
| GCCTTATATGACATGACACA+TGG | + | chr7.3:45831968-45831987 | MS.gene66054:intron | 40.0% | |
| GGAAGTCTTCTTGATCTAGT+TGG | - | chr7.3:45834167-45834186 | None:intergenic | 40.0% | |
| GGCTACAAGCAAAAACAAAG+TGG | + | chr7.3:45833648-45833667 | MS.gene66054:intron | 40.0% | |
| TCATCCATAAACTTAGGCTG+TGG | - | chr7.3:45834086-45834105 | None:intergenic | 40.0% | |
| TGTTTAGGGAAACTTGGGTT+GGG | + | chr7.3:45833824-45833843 | MS.gene66054:intron | 40.0% | |
| TTGTTTAGGGAAACTTGGGT+TGG | + | chr7.3:45833823-45833842 | MS.gene66054:intron | 40.0% | |
| ! | ACCGGTGTCAATATCATGTT+CGG | - | chr7.3:45831903-45831922 | None:intergenic | 40.0% |
| ! | AGTCACTTTAGTCCCTGAAT+CGG | + | chr7.3:45832561-45832580 | MS.gene66054:intron | 40.0% |
| ! | AGTCACTTTAGTCCCTGAAT+GGG | - | chr7.3:45832580-45832561 | None:intergenic | 40.0% |
| ! | GACTACTTGCTACACATTCA+GGG | - | chr7.3:45833013-45833032 | None:intergenic | 40.0% |
| ! | GGCTAAATTCAAAGCCTTGT+TGG | - | chr7.3:45833922-45833941 | None:intergenic | 40.0% |
| ! | TAGTCACTTTAGTCCCTGAA+TGG | - | chr7.3:45832579-45832560 | None:intergenic | 40.0% |
| ! | TGACTACTTGCTACACATTC+AGG | - | chr7.3:45833014-45833033 | None:intergenic | 40.0% |
| !! | ATCATGTTCGGTGTCTGTAT+CGG | - | chr7.3:45831891-45831910 | None:intergenic | 40.0% |
| !! | GCATGTTTGGCTTTGACATA+AGG | - | chr7.3:45830830-45830849 | None:intergenic | 40.0% |
| !! | GGATAGTGCTCTAAAGGATA+TGG | + | chr7.3:45831591-45831610 | MS.gene66054:CDS | 40.0% |
| !! | TTTTGGAAGGCAATCAATGC+TGG | + | chr7.3:45831559-45831578 | MS.gene66054:CDS | 40.0% |
| !!! | GCTTATATTTTGGTACGGAG+AGG | + | chr7.3:45831230-45831249 | MS.gene66054:intron | 40.0% |
| AAACTACATGATGGCTGAGG+TGG | + | chr7.3:45833863-45833882 | MS.gene66054:CDS | 45.0% | |
| AAACTTAGGCTGTGGCAAGT+TGG | - | chr7.3:45834078-45834097 | None:intergenic | 45.0% | |
| AAAGCCAAACATGCTCAGGT+AGG | + | chr7.3:45830836-45830855 | MS.gene66054:intron | 45.0% | |
| AAGGTGAGGCCTTTAATGGA+AGG | + | chr7.3:45832140-45832159 | MS.gene66054:CDS | 45.0% | |
| ACTTTAGTCCCTGAATCGGA+AGG | + | chr7.3:45832565-45832584 | MS.gene66054:intron | 45.0% | |
| AGTACCTACCTGAGCATGTT+TGG | - | chr7.3:45830843-45830862 | None:intergenic | 45.0% | |
| ATTGCAAAACAGTCCCTGCA+TGG | - | chr7.3:45832744-45832763 | None:intergenic | 45.0% | |
| CTTGCCACAGCCTAAGTTTA+TGG | + | chr7.3:45834079-45834098 | MS.gene66054:CDS | 45.0% | |
| CTTTAGTCCCTGAATCGGAA+GGG | + | chr7.3:45832566-45832585 | MS.gene66054:intron | 45.0% | |
| GACAAACTACATGATGGCTG+AGG | + | chr7.3:45833860-45833879 | MS.gene66054:CDS | 45.0% | |
| GACTACTCGTCACTCATTCA+GGG | + | chr7.3:45833328-45833347 | MS.gene66054:intron | 45.0% | |
| GATAGATGCTGATGCCAACA+AGG | + | chr7.3:45833905-45833924 | MS.gene66054:CDS | 45.0% | |
| TACCAAGGTGAGGCCTTTAA+TGG | + | chr7.3:45832136-45832155 | MS.gene66054:CDS | 45.0% | |
| TCCCTGAAATTGACCATGCA+GGG | + | chr7.3:45832728-45832747 | MS.gene66054:intron | 45.0% | |
| TCCCTGCATGGTCAATTTCA+GGG | - | chr7.3:45832732-45832751 | None:intergenic | 45.0% | |
| TGACTACTCGTCACTCATTC+AGG | + | chr7.3:45833327-45833346 | MS.gene66054:intron | 45.0% | |
| TGTCAAAGCCAAACATGCTC+AGG | + | chr7.3:45830832-45830851 | MS.gene66054:CDS | 45.0% | |
| TTCCATTAAAGGCCTCACCT+TGG | - | chr7.3:45832141-45832160 | None:intergenic | 45.0% | |
| ! | GTTTTGCAAGGAAAGCTTCC+AGG | + | chr7.3:45833996-45834015 | MS.gene66054:CDS | 45.0% |
| !!! | ATTAAAAACATATTTTTATA+AGG | + | chr7.3:45833480-45833499 | MS.gene66054:intron | 5.0% |
| ACAAAGACTGCTCGCTCTCA+TGG | + | chr7.3:45832166-45832185 | MS.gene66054:CDS | 50.0% | |
| CTTTAGTCCCTGAATGGGAG+AGG | - | chr7.3:45832798-45832817 | None:intergenic | 50.0% | |
| GACGAATCCCTTCCGATTCA+GGG | - | chr7.3:45832576-45832595 | None:intergenic | 50.0% | |
| GACGAATCCTCTCCCATTCA+GGG | + | chr7.3:45832788-45832807 | MS.gene66054:intron | 50.0% | |
| GTCCCTGAAATTGACCATGC+AGG | + | chr7.3:45832727-45832746 | MS.gene66054:intron | 50.0% | |
| GTCCCTGCATGGTCAATTTC+AGG | - | chr7.3:45832733-45832752 | None:intergenic | 50.0% | |
| TGACGAATCCCTTCCGATTC+AGG | - | chr7.3:45832577-45832596 | None:intergenic | 50.0% | |
| TGACGAATCCTCTCCCATTC+AGG | + | chr7.3:45832787-45832806 | MS.gene66054:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 45830737 | 45834232 | 45830737 | ID=MS.gene66054 |
| chr7.3 | mRNA | 45830737 | 45834232 | 45830737 | ID=MS.gene66054.t1;Parent=MS.gene66054 |
| chr7.3 | exon | 45830737 | 45830853 | 45830737 | ID=MS.gene66054.t1.exon1;Parent=MS.gene66054.t1 |
| chr7.3 | CDS | 45830737 | 45830853 | 45830737 | ID=cds.MS.gene66054.t1;Parent=MS.gene66054.t1 |
| chr7.3 | exon | 45831523 | 45831735 | 45831523 | ID=MS.gene66054.t1.exon2;Parent=MS.gene66054.t1 |
| chr7.3 | CDS | 45831523 | 45831735 | 45831523 | ID=cds.MS.gene66054.t1;Parent=MS.gene66054.t1 |
| chr7.3 | exon | 45832079 | 45832234 | 45832079 | ID=MS.gene66054.t1.exon3;Parent=MS.gene66054.t1 |
| chr7.3 | CDS | 45832079 | 45832234 | 45832079 | ID=cds.MS.gene66054.t1;Parent=MS.gene66054.t1 |
| chr7.3 | exon | 45833831 | 45834232 | 45833831 | ID=MS.gene66054.t1.exon4;Parent=MS.gene66054.t1 |
| chr7.3 | CDS | 45833831 | 45834232 | 45833831 | ID=cds.MS.gene66054.t1;Parent=MS.gene66054.t1 |
| Gene Sequence |
| Protein sequence |
