AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene052426


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 54 sgRNAs with CRISPR-Local

Find 209 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATAGATTCTAAATGCTTTC+AGG 0.153702 6.1:-74818773 MS.gene052426:intron
GCAGGGGAAGTTGCACATTT+TGG 0.202942 6.1:-74821201 MS.gene052426:intron
TGTTGGCAGAGCTTTGTTAT+TGG 0.269454 6.1:-74818832 MS.gene052426:intron
CTGATGCATTGATCTCCTTC+TGG 0.269494 6.1:+74819584 None:intergenic
TTATGCTTACTAGTTGAATT+AGG 0.274629 6.1:+74821072 None:intergenic
TCTGAATTGATTGATCTCTA+TGG 0.290027 6.1:-74821485 MS.gene052426:intron
GAGATACGCTTGTCATGATT+TGG 0.303110 6.1:+74820477 None:intergenic
TATATGTTGTCTTCCTTTGT+TGG 0.308105 6.1:-74820286 MS.gene052426:CDS
CCAAGAGATACATGGCATTC+TGG 0.323171 6.1:-74821569 MS.gene052426:CDS
CAAATACCATCACATGGATT+TGG 0.338082 6.1:+74820615 None:intergenic
GATGATGTTCCATATGGATA+TGG 0.339974 6.1:-74818633 MS.gene052426:CDS
CAAAGTTGGAAAAGACTGTT+TGG 0.346464 6.1:-74821961 MS.gene052426:CDS
TACTTTGCAATGCTATTGAT+TGG 0.370812 6.1:-74818576 MS.gene052426:CDS
GGGCAACAAAGATTGTTCTA+TGG 0.386886 6.1:-74821541 MS.gene052426:CDS
ATGTGGGCTGGACCAGTGCT+TGG 0.396466 6.1:-74818203 MS.gene052426:CDS
TGTCTTGCCTTCCATACAAT+TGG 0.400690 6.1:+74817818 None:intergenic
CATGTGATGGTATTTGCAAC+AGG 0.432557 6.1:-74820608 MS.gene052426:CDS
GGAACATCATCTTCTTCTGC+TGG 0.439187 6.1:+74818645 None:intergenic
CTGCAGATGGTCACTTGATG+TGG 0.452717 6.1:-74818220 MS.gene052426:intron
ACATATAGCCCCATCAATCC+TGG 0.458090 6.1:+74820302 None:intergenic
GAAGAAGATGATGTTCCATA+TGG 0.466677 6.1:-74818639 MS.gene052426:CDS
TGCTGATAGCTCCAATTGTA+TGG 0.471218 6.1:-74817829 MS.gene052426:CDS
GATCAATGCATCAGAACATC+AGG 0.477126 6.1:-74819575 MS.gene052426:CDS
TTGCAATGCTATTGATTGGA+TGG 0.487844 6.1:-74818572 MS.gene052426:CDS
CCAGAATGCCATGTATCTCT+TGG 0.491441 6.1:+74821569 None:intergenic
GATGGTCACTTGATGTGGGC+TGG 0.502453 6.1:-74818215 MS.gene052426:CDS
TGTGGGCTGGACCAGTGCTT+GGG 0.503046 6.1:-74818202 MS.gene052426:CDS
TACTATTCTGACCCAAGCAC+TGG 0.503124 6.1:+74818191 None:intergenic
CATTAATTTGCAGCTAAGGA+AGG 0.506153 6.1:-74818676 MS.gene052426:intron
TGCAGATGGTCACTTGATGT+GGG 0.517995 6.1:-74818219 MS.gene052426:intron
TTTGTTGGTGTGCAATCAGA+AGG 0.521888 6.1:-74820271 MS.gene052426:intron
CAGAATAGTAAATGAATGGT+TGG 0.523254 6.1:-74818178 MS.gene052426:CDS
TGCTTACTAGTTGAATTAGG+AGG 0.533605 6.1:+74821075 None:intergenic
AAAGTTGGAAAAGACTGTTT+GGG 0.535404 6.1:-74821960 MS.gene052426:CDS
TAGAGATCAATCAATTCAGA+AGG 0.539665 6.1:+74821488 None:intergenic
TTGAGGAGGCATGATGGTAT+TGG 0.539814 6.1:+74820533 None:intergenic
GCATAATCAGCTTCATTACA+TGG 0.539831 6.1:-74821055 MS.gene052426:CDS
ATTAATTTGCAGCTAAGGAA+GGG 0.543167 6.1:-74818675 MS.gene052426:intron
TTCTGATTGCACACCAACAA+AGG 0.551050 6.1:+74820273 None:intergenic
GGGTCAGAATAGTAAATGAA+TGG 0.552152 6.1:-74818182 MS.gene052426:CDS
TACATGGCATTCTGGATGGT+GGG 0.553354 6.1:-74821561 MS.gene052426:CDS
GATAGCTCCAATTGTATGGA+AGG 0.571406 6.1:-74817825 MS.gene052426:CDS
AAAATGTTGAGGAGGCATGA+TGG 0.587527 6.1:+74820527 None:intergenic
GAGATACATGGCATTCTGGA+TGG 0.589052 6.1:-74821565 MS.gene052426:CDS
TTGTGTCAATAGGTAAATGG+TGG 0.592494 6.1:-74820335 MS.gene052426:intron
CTGTTGCAAATACCATCACA+TGG 0.597757 6.1:+74820609 None:intergenic
ATACATGGCATTCTGGATGG+TGG 0.619650 6.1:-74821562 MS.gene052426:CDS
TGAATGAACCAAGAGATACA+TGG 0.628217 6.1:-74821577 MS.gene052426:CDS
GTGCAGCCAAATCCATGTGA+TGG 0.636534 6.1:-74820621 MS.gene052426:intron
TGCAAAGTACATAGCTCCTG+TGG 0.637719 6.1:+74818590 None:intergenic
GCACTGTAACCAAAACAGAC+TGG 0.637874 6.1:-74819553 MS.gene052426:CDS
TGTGCATGCAGTGAACCAGA+AGG 0.646240 6.1:-74819599 MS.gene052426:intron
AGAGATCAATCAATTCAGAA+GGG 0.664107 6.1:+74821489 None:intergenic
AAAGACTGTTTGGGAGCACA+TGG 0.665233 6.1:-74821951 MS.gene052426:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTTAAAAATGCAAAAAA+AGG + chr6.1:74819539-74819558 None:intergenic 10.0%
!! ATATTCAATAGAAATAAAAA+GGG + chr6.1:74820140-74820159 None:intergenic 10.0%
!! TATATTCAATAGAAATAAAA+AGG + chr6.1:74820141-74820160 None:intergenic 10.0%
!! TTGAAAAAAATTAAATTTGA+TGG - chr6.1:74818942-74818961 MS.gene052426:intron 10.0%
!!! AATTATTATCTATATTTTTC+AGG - chr6.1:74818673-74818692 MS.gene052426:intron 10.0%
!!! ATTATTATCTATATTTTTCA+GGG - chr6.1:74818674-74818693 MS.gene052426:intron 10.0%
!!! CTCTATTATATATTTAAAAT+AGG - chr6.1:74818486-74818505 MS.gene052426:intron 10.0%
!!! GTATGAATTTTTTAATTTAT+TGG + chr6.1:74820572-74820591 None:intergenic 10.0%
!! ATACTAATATAGTATTTGAT+TGG + chr6.1:74821340-74821359 None:intergenic 15.0%
!! ATTGAAATTTAATTCGATAA+AGG + chr6.1:74817883-74817902 None:intergenic 15.0%
!! TTATAGTAAAAAAATTGCAT+GGG - chr6.1:74817926-74817945 MS.gene052426:intron 15.0%
!! TTTAAATGCAATTATAAAGT+AGG + chr6.1:74819054-74819073 None:intergenic 15.0%
!! TTTATAGTAAAAAAATTGCA+TGG - chr6.1:74817925-74817944 MS.gene052426:intron 15.0%
!!! AAAATTGGTTTTGATTAAAT+TGG - chr6.1:74819615-74819634 MS.gene052426:intron 15.0%
!!! ATTTTTATCGATTTATGTTA+GGG - chr6.1:74819683-74819702 MS.gene052426:intron 15.0%
!!! CTTAAATAAAACATACTTTT+GGG + chr6.1:74819329-74819348 None:intergenic 15.0%
!!! TATTTTTTATGATGATGTTT+TGG - chr6.1:74818154-74818173 MS.gene052426:intron 15.0%
!!! TCTTAAATAAAACATACTTT+TGG + chr6.1:74819330-74819349 None:intergenic 15.0%
!!! TGACATAATTACTTTTTTTT+GGG - chr6.1:74818553-74818572 MS.gene052426:CDS 15.0%
!!! TTATGTTTGTTTATGTATTT+TGG - chr6.1:74820326-74820345 MS.gene052426:CDS 15.0%
!!! TTTTCATATTAAAAATGTCT+CGG - chr6.1:74819956-74819975 MS.gene052426:intron 15.0%
!! AAAAAAAGTAATTATGTCAG+AGG + chr6.1:74818552-74818571 None:intergenic 20.0%
!! AAATAGCTAATCAAGAATTA+AGG + chr6.1:74818139-74818158 None:intergenic 20.0%
!! ACTTTCGAAAATCAAATTTA+AGG + chr6.1:74819825-74819844 None:intergenic 20.0%
!! CAAACATAGAGATTAATAAT+TGG + chr6.1:74818335-74818354 None:intergenic 20.0%
!! TAAGATTATGTTTATAGGAT+AGG + chr6.1:74818859-74818878 None:intergenic 20.0%
!! TCATTGGAAACATATTTATT+AGG + chr6.1:74821381-74821400 None:intergenic 20.0%
!! TTTCATATTAAAAATGTCTC+GGG - chr6.1:74819957-74819976 MS.gene052426:intron 20.0%
!!! AACTTTTTTTTTGTGTCAAT+AGG - chr6.1:74819431-74819450 MS.gene052426:intron 20.0%
!!! ACATATTTTTCTAACTAGTT+TGG - chr6.1:74820366-74820385 MS.gene052426:intron 20.0%
!!! CTGACATAATTACTTTTTTT+TGG - chr6.1:74818552-74818571 MS.gene052426:CDS 20.0%
!!! GATTTTTATCGATTTATGTT+AGG - chr6.1:74819682-74819701 MS.gene052426:intron 20.0%
!!! TTCAATTGCTTTAAAATTGT+CGG + chr6.1:74818412-74818431 None:intergenic 20.0%
!!! TTTTAGTAGAATTGACTTTA+GGG - chr6.1:74819736-74819755 MS.gene052426:intron 20.0%
!!! TTTTTAGTGAAAAGTTTCAT+AGG - chr6.1:74821865-74821884 MS.gene052426:intron 20.0%
! AAATTCATACAAACCAATTG+TGG - chr6.1:74820582-74820601 MS.gene052426:CDS 25.0%
! AAGTGATGAAAAAAATGTTG+AGG + chr6.1:74819263-74819282 None:intergenic 25.0%
! ATCAATGAAGCATGTTTATT+TGG - chr6.1:74821449-74821468 MS.gene052426:intron 25.0%
! ATGATATAGCTTCAGAAAAA+AGG + chr6.1:74821655-74821674 None:intergenic 25.0%
! ATTATTATGATGTCACAAGA+TGG + chr6.1:74820438-74820457 None:intergenic 25.0%
! CAAAAGACAAAAAGAAAACA+TGG + chr6.1:74820819-74820838 None:intergenic 25.0%
! CACACTAAGATTATGTTTAT+AGG + chr6.1:74818864-74818883 None:intergenic 25.0%
! CATCACAAGTTAGAAATATT+AGG - chr6.1:74819713-74819732 MS.gene052426:intron 25.0%
! GAAAATTTCCCTAGAAAAAA+AGG + chr6.1:74819406-74819425 None:intergenic 25.0%
! GCATTCTAGTAGTTTATTAA+AGG + chr6.1:74818800-74818819 None:intergenic 25.0%
! GTATTGTTATATACAGAGAT+CGG - chr6.1:74818007-74818026 MS.gene052426:intron 25.0%
! TCACATGAAAATCATATGAT+GGG + chr6.1:74819382-74819401 None:intergenic 25.0%
! TCATTTACTATGTGATAAGA+TGG - chr6.1:74820737-74820756 MS.gene052426:intron 25.0%
! TTATGCTTACTAGTTGAATT+AGG + chr6.1:74818707-74818726 None:intergenic 25.0%
! TTCACATGAAAATCATATGA+TGG + chr6.1:74819383-74819402 None:intergenic 25.0%
!! TTTTTGTGTCAATAGGTAAA+TGG - chr6.1:74819438-74819457 MS.gene052426:intron 25.0%
!!! AAGAGCAGCTATTAATTTTT+TGG - chr6.1:74821523-74821542 MS.gene052426:CDS 25.0%
!!! AATTATTGTTTTACCACAAG+TGG + chr6.1:74818102-74818121 None:intergenic 25.0%
!!! ATAATTACTTTTTTTTGGGC+AGG - chr6.1:74818557-74818576 MS.gene052426:CDS 25.0%
!!! ATATCATTAATTTGCAGCTA+AGG - chr6.1:74821096-74821115 MS.gene052426:intron 25.0%
!!! GGATAATTTTGATGTACATT+TGG - chr6.1:74819214-74819233 MS.gene052426:intron 25.0%
!!! GTTTTAGTAGAATTGACTTT+AGG - chr6.1:74819735-74819754 MS.gene052426:intron 25.0%
!!! TAATTACTTTTTTTTGGGCA+GGG - chr6.1:74818558-74818577 MS.gene052426:CDS 25.0%
!!! TCAACATTTTTTTCATCACT+TGG - chr6.1:74819262-74819281 MS.gene052426:intron 25.0%
!!! TTCTTATCATTTTGACAGTA+TGG - chr6.1:74821923-74821942 MS.gene052426:CDS 25.0%
AAAGATTCTAAGCATGTGTT+TGG + chr6.1:74820011-74820030 None:intergenic 30.0%
AAAGTTGGAAAAGACTGTTT+GGG - chr6.1:74817816-74817835 MS.gene052426:CDS 30.0%
AAGCATTATATTACCACTTG+TGG - chr6.1:74818086-74818105 MS.gene052426:intron 30.0%
ACATAAGCTTAAAGTGTGTT+TGG - chr6.1:74819861-74819880 MS.gene052426:intron 30.0%
ACTACATAGGTTAAAACTCT+CGG + chr6.1:74821705-74821724 None:intergenic 30.0%
AGAGATCAATCAATTCAGAA+GGG + chr6.1:74818290-74818309 None:intergenic 30.0%
ATAATACACCTAAGCTTCAT+TGG + chr6.1:74821397-74821416 None:intergenic 30.0%
ATATGTTCTCAAGTAACAAG+AGG + chr6.1:74820352-74820371 None:intergenic 30.0%
ATATGTTTCCAATGAAGCTT+AGG - chr6.1:74821386-74821405 MS.gene052426:intron 30.0%
ATCAAGCCAAATGATTCAAT+CGG - chr6.1:74818374-74818393 MS.gene052426:intron 30.0%
CAGAAAAATATGCAGAAAGA+TGG - chr6.1:74818763-74818782 MS.gene052426:intron 30.0%
CAGAATAGTAAATGAATGGT+TGG - chr6.1:74821598-74821617 MS.gene052426:CDS 30.0%
CATAGATTCTAAATGCTTTC+AGG - chr6.1:74821003-74821022 MS.gene052426:intron 30.0%
CATCATTCAATGAGAAAGTA+TGG - chr6.1:74821233-74821252 MS.gene052426:intron 30.0%
GTCAGAAAAGAAAAAGAAGA+GGG - chr6.1:74821309-74821328 MS.gene052426:intron 30.0%
TACTTTGCAATGCTATTGAT+TGG - chr6.1:74821200-74821219 MS.gene052426:CDS 30.0%
TAGAGATCAATCAATTCAGA+AGG + chr6.1:74818291-74818310 None:intergenic 30.0%
TATATGTTGTCTTCCTTTGT+TGG - chr6.1:74819490-74819509 MS.gene052426:intron 30.0%
TCTGAATTGATTGATCTCTA+TGG - chr6.1:74818291-74818310 MS.gene052426:intron 30.0%
TGAAGCTTAGGTGTATTATT+TGG - chr6.1:74821398-74821417 MS.gene052426:intron 30.0%
TGATGAAAAAAATGTTGAGG+AGG + chr6.1:74819260-74819279 None:intergenic 30.0%
TGGAAAAAACCATATCCATA+TGG + chr6.1:74821155-74821174 None:intergenic 30.0%
TTAAGCAATGTTGTCAAAAC+TGG + chr6.1:74820716-74820735 None:intergenic 30.0%
TTCCATCTTGTTCATGTTAT+GGG - chr6.1:74821256-74821275 MS.gene052426:intron 30.0%
TTCTAATGCACAACAACTAA+TGG - chr6.1:74821896-74821915 MS.gene052426:intron 30.0%
TTTAGCATGTATTTAGTGTG+CGG - chr6.1:74819587-74819606 MS.gene052426:CDS 30.0%
! AAATCATATGATGGGAGAAA+AGG + chr6.1:74819374-74819393 None:intergenic 30.0%
! ACGATATGATGTGTTTTCAT+TGG + chr6.1:74819004-74819023 None:intergenic 30.0%
! AGGTTCATATTTTATCTGCT+TGG - chr6.1:74819188-74819207 MS.gene052426:intron 30.0%
! ATGTCTTCAATTTGAAGTGT+TGG + chr6.1:74821729-74821748 None:intergenic 30.0%
! CATATTTTATCTGCTTGGTT+GGG - chr6.1:74819193-74819212 MS.gene052426:intron 30.0%
! CTTAGAATCTTTTCTCCAAA+AGG - chr6.1:74820019-74820038 MS.gene052426:intron 30.0%
! GTTATTGCAACATTTTCAAC+AGG - chr6.1:74820980-74820999 MS.gene052426:intron 30.0%
! TCATATTTTATCTGCTTGGT+TGG - chr6.1:74819192-74819211 MS.gene052426:intron 30.0%
! TGTGTTTTATATTGCATCCA+TGG + chr6.1:74820047-74820066 None:intergenic 30.0%
!! ATTAATTTGCAGCTAAGGAA+GGG - chr6.1:74821101-74821120 MS.gene052426:intron 30.0%
!! ATTTTAAGTCCAGGATTGAT+GGG - chr6.1:74819465-74819484 MS.gene052426:intron 30.0%
!!! AATTACTTTTTTTTGGGCAG+GGG - chr6.1:74818559-74818578 MS.gene052426:CDS 30.0%
!!! CATGTGAACCTTTTTTTCTA+GGG - chr6.1:74819395-74819414 MS.gene052426:intron 30.0%
!!! TCATGTGAACCTTTTTTTCT+AGG - chr6.1:74819394-74819413 MS.gene052426:intron 30.0%
AAACCAATTGTGGTTCAACT+TGG - chr6.1:74820592-74820611 MS.gene052426:CDS 35.0%
AACACTACTGTCTTCAATGT+TGG - chr6.1:74820903-74820922 MS.gene052426:intron 35.0%
AACTTAACCAGAGAAGAAAC+CGG - chr6.1:74820485-74820504 MS.gene052426:CDS 35.0%
ACAAAACTGTGAATCAACTG+TGG - chr6.1:74820629-74820648 MS.gene052426:intron 35.0%
AGTAGTCTATTGACCATAAG+TGG + chr6.1:74818054-74818073 None:intergenic 35.0%
ATTATGATGTCACAAGATGG+TGG + chr6.1:74820435-74820454 None:intergenic 35.0%
CAAAAATTTGATTGCGAACG+TGG - chr6.1:74819983-74820002 MS.gene052426:intron 35.0%
CAAAGTTGGAAAAGACTGTT+TGG - chr6.1:74817815-74817834 MS.gene052426:CDS 35.0%
CAAATACCATCACATGGATT+TGG + chr6.1:74819164-74819183 None:intergenic 35.0%
CATGGTTCAATTCGTCTAAT+CGG - chr6.1:74820522-74820541 MS.gene052426:CDS 35.0%
CGTCAGAAAAGAAAAAGAAG+AGG - chr6.1:74821308-74821327 MS.gene052426:intron 35.0%
GAAGAAGATGATGTTCCATA+TGG - chr6.1:74821137-74821156 MS.gene052426:intron 35.0%
GATGATGTTCCATATGGATA+TGG - chr6.1:74821143-74821162 MS.gene052426:intron 35.0%
GCAATTGAACTATGACTTGA+AGG - chr6.1:74818423-74818442 MS.gene052426:intron 35.0%
GCATAATCAGCTTCATTACA+TGG - chr6.1:74818721-74818740 MS.gene052426:intron 35.0%
GGGTCAGAATAGTAAATGAA+TGG - chr6.1:74821594-74821613 MS.gene052426:CDS 35.0%
GTAGTCTATTGACCATAAGT+GGG + chr6.1:74818053-74818072 None:intergenic 35.0%
GTCATTGTCAGTGTTTCATA+GGG - chr6.1:74821840-74821859 MS.gene052426:intron 35.0%
GTTCAACCGATTGAATCATT+TGG + chr6.1:74818383-74818402 None:intergenic 35.0%
GTTCCATCTTGTTCATGTTA+TGG - chr6.1:74821255-74821274 MS.gene052426:intron 35.0%
TAGTCTATTGACCATAAGTG+GGG + chr6.1:74818052-74818071 None:intergenic 35.0%
TAGTGTGCGGTGATAAAAAT+TGG - chr6.1:74819600-74819619 MS.gene052426:intron 35.0%
TATAAGACATGATTGCATGC+AGG + chr6.1:74820075-74820094 None:intergenic 35.0%
TCGATTCAACTGGTTGAATT+AGG + chr6.1:74820683-74820702 None:intergenic 35.0%
TCGTCTAATCGGTTAAACTA+GGG - chr6.1:74820533-74820552 MS.gene052426:CDS 35.0%
TGAATGAACCAAGAGATACA+TGG - chr6.1:74818199-74818218 MS.gene052426:CDS 35.0%
TGACATGTGACAATAACTGT+TGG - chr6.1:74820927-74820946 MS.gene052426:intron 35.0%
TGCTTACTAGTTGAATTAGG+AGG + chr6.1:74818704-74818723 None:intergenic 35.0%
TGGAAATATTGTTCTGCAGA+TGG - chr6.1:74821543-74821562 MS.gene052426:CDS 35.0%
TGTCATTGTCAGTGTTTCAT+AGG - chr6.1:74821839-74821858 MS.gene052426:intron 35.0%
TTCGTCTAATCGGTTAAACT+AGG - chr6.1:74820532-74820551 MS.gene052426:CDS 35.0%
TTGTGTCAATAGGTAAATGG+TGG - chr6.1:74819441-74819460 MS.gene052426:intron 35.0%
! GATGTGTTTTCATTGGATGT+CGG + chr6.1:74818997-74819016 None:intergenic 35.0%
! TTGCAATGCTATTGATTGGA+TGG - chr6.1:74821204-74821223 MS.gene052426:intron 35.0%
!! AATCAACTAGTCTTCTAGGT+TGG + chr6.1:74820660-74820679 None:intergenic 35.0%
!! AGTAGAATTGACTTTAGGGT+TGG - chr6.1:74819740-74819759 MS.gene052426:intron 35.0%
!! CATTAATTTGCAGCTAAGGA+AGG - chr6.1:74821100-74821119 MS.gene052426:intron 35.0%
!! CATTTTAAGTCCAGGATTGA+TGG - chr6.1:74819464-74819483 MS.gene052426:intron 35.0%
!! GATTTTCGAAAGTACAATCG+TGG - chr6.1:74819832-74819851 MS.gene052426:intron 35.0%
!! GCTTTAAAATTGTCGGTTCA+CGG + chr6.1:74818405-74818424 None:intergenic 35.0%
!! TAGGAATCAACTAGTCTTCT+AGG + chr6.1:74820664-74820683 None:intergenic 35.0%
!! TTGAAGTGTTGGTACTACAT+AGG + chr6.1:74821718-74821737 None:intergenic 35.0%
!! TTTTAAGTCCAGGATTGATG+GGG - chr6.1:74819466-74819485 MS.gene052426:intron 35.0%
!!! TGATGTTTTGGTCAACTACA+AGG - chr6.1:74818166-74818185 MS.gene052426:CDS 35.0%
!!! TTCCATTTTGTTTTTGCCAC+AGG - chr6.1:74821170-74821189 MS.gene052426:intron 35.0%
ATTCAACCAGTTGAATCGAC+CGG - chr6.1:74820684-74820703 MS.gene052426:intron 40.0%
CATGTGATGGTATTTGCAAC+AGG - chr6.1:74819168-74819187 MS.gene052426:intron 40.0%
CATGTTATGGGCATCATACT+TGG - chr6.1:74821268-74821287 MS.gene052426:intron 40.0%
CGATTAGACGAATTGAACCA+TGG + chr6.1:74820524-74820543 None:intergenic 40.0%
CTCCTGTGGCAAAAACAAAA+TGG + chr6.1:74821175-74821194 None:intergenic 40.0%
CTGTTGCAAATACCATCACA+TGG + chr6.1:74819170-74819189 None:intergenic 40.0%
GAGATACGCTTGTCATGATT+TGG + chr6.1:74819302-74819321 None:intergenic 40.0%
GATAGCTCCAATTGTATGGA+AGG - chr6.1:74821951-74821970 MS.gene052426:CDS 40.0%
GATCAATGCATCAGAACATC+AGG - chr6.1:74820201-74820220 MS.gene052426:intron 40.0%
GGGCAACAAAGATTGTTCTA+TGG - chr6.1:74818235-74818254 MS.gene052426:intron 40.0%
TCAACTGAGTTATGTTCACG+AGG + chr6.1:74817977-74817996 None:intergenic 40.0%
TGCCCATAACATGAACAAGA+TGG + chr6.1:74821261-74821280 None:intergenic 40.0%
TGCTGATAGCTCCAATTGTA+TGG - chr6.1:74821947-74821966 MS.gene052426:CDS 40.0%
TGTCTTGCCTTCCATACAAT+TGG + chr6.1:74821961-74821980 None:intergenic 40.0%
TTCTGATTGCACACCAACAA+AGG + chr6.1:74819506-74819525 None:intergenic 40.0%
TTTGTTGGTGTGCAATCAGA+AGG - chr6.1:74819505-74819524 MS.gene052426:intron 40.0%
! AAAATGTTGAGGAGGCATGA+TGG + chr6.1:74819252-74819271 None:intergenic 40.0%
! ATTGCATCCATGGTTCCTTT+TGG + chr6.1:74820037-74820056 None:intergenic 40.0%
! CTATGACTTGAAGGTCTTGT+TGG - chr6.1:74818432-74818451 MS.gene052426:intron 40.0%
! CTTTTCTCCAAAAGGAACCA+TGG - chr6.1:74820027-74820046 MS.gene052426:intron 40.0%
! GAACCAAGTTGAACCACAAT+TGG + chr6.1:74820598-74820617 None:intergenic 40.0%
! GATGTTTTGCCAGTCTGTTT+TGG + chr6.1:74820235-74820254 None:intergenic 40.0%
!! AATGGTGGCATTTTAAGTCC+AGG - chr6.1:74819456-74819475 MS.gene052426:intron 40.0%
!! TGTTGGCAGAGCTTTGTTAT+TGG - chr6.1:74820944-74820963 MS.gene052426:intron 40.0%
!!! AAGTTGCACATTTTGGAGCA+GGG - chr6.1:74818582-74818601 MS.gene052426:CDS 40.0%
!!! GGTGTTTTGAGAGTTAGCAT+GGG - chr6.1:74817846-74817865 MS.gene052426:intron 40.0%
!!! TGGTGTTTTGAGAGTTAGCA+TGG - chr6.1:74817845-74817864 MS.gene052426:intron 40.0%
ACATATAGCCCCATCAATCC+TGG + chr6.1:74819477-74819496 None:intergenic 45.0%
ATACATGGCATTCTGGATGG+TGG - chr6.1:74818214-74818233 MS.gene052426:CDS 45.0%
CCAAGAGATACATGGCATTC+TGG - chr6.1:74818207-74818226 MS.gene052426:CDS 45.0%
CCAGAATGCCATGTATCTCT+TGG + chr6.1:74818210-74818229 None:intergenic 45.0%
GAGATACATGGCATTCTGGA+TGG - chr6.1:74818211-74818230 MS.gene052426:CDS 45.0%
GCACTGTAACCAAAACAGAC+TGG - chr6.1:74820223-74820242 MS.gene052426:intron 45.0%
GGAACATCATCTTCTTCTGC+TGG + chr6.1:74821134-74821153 None:intergenic 45.0%
TACATGGCATTCTGGATGGT+GGG - chr6.1:74818215-74818234 MS.gene052426:CDS 45.0%
TACTATTCTGACCCAAGCAC+TGG + chr6.1:74821588-74821607 None:intergenic 45.0%
TGCAAAGTACATAGCTCCTG+TGG + chr6.1:74821189-74821208 None:intergenic 45.0%
TGCAGATGGTCACTTGATGT+GGG - chr6.1:74821557-74821576 MS.gene052426:CDS 45.0%
TTGTCAAAACTGGACCGAAC+CGG + chr6.1:74820706-74820725 None:intergenic 45.0%
! AAAGACTGTTTGGGAGCACA+TGG - chr6.1:74817825-74817844 MS.gene052426:CDS 45.0%
! CTGATGCATTGATCTCCTTC+TGG + chr6.1:74820195-74820214 None:intergenic 45.0%
! TTGAGGAGGCATGATGGTAT+TGG + chr6.1:74819246-74819265 None:intergenic 45.0%
!!! GAAGTTGCACATTTTGGAGC+AGG - chr6.1:74818581-74818600 MS.gene052426:CDS 45.0%
!!! GGTCTTGTTGGTTCGTTTTC+TGG - chr6.1:74818444-74818463 MS.gene052426:intron 45.0%
!!! TCTATTATATATTTAAAATA+GGG - chr6.1:74818487-74818506 MS.gene052426:intron 5.0%
ACCAGTTGAATCGACCGGTT+CGG - chr6.1:74820689-74820708 MS.gene052426:intron 50.0%
CTGCAGATGGTCACTTGATG+TGG - chr6.1:74821556-74821575 MS.gene052426:CDS 50.0%
GTGCAGCCAAATCCATGTGA+TGG - chr6.1:74819155-74819174 MS.gene052426:intron 50.0%
TGTGCATGCAGTGAACCAGA+AGG - chr6.1:74820177-74820196 MS.gene052426:intron 50.0%
! AGAGATCGGTGTTCGAACCT+CGG - chr6.1:74818021-74818040 MS.gene052426:intron 50.0%
! GCAGGGGAAGTTGCACATTT+TGG - chr6.1:74818575-74818594 MS.gene052426:CDS 50.0%
!! AGTCTCACCGGTTTCTTCTC+TGG + chr6.1:74820495-74820514 None:intergenic 50.0%
ATTCAATGCCCGCTGCCTGT+CGG - chr6.1:74821749-74821768 MS.gene052426:intron 55.0%
CCATGGCTCAGAAGTCTCAC+CGG + chr6.1:74820507-74820526 None:intergenic 55.0%
GATGGTCACTTGATGTGGGC+TGG - chr6.1:74821561-74821580 MS.gene052426:CDS 55.0%
! AAGTGTCGTGTCACACCGAC+AGG + chr6.1:74821767-74821786 None:intergenic 55.0%
! ACCGAACCGGTCGATTCAAC+TGG + chr6.1:74820693-74820712 None:intergenic 55.0%
CCATAAGTGGGGTGTGTCCG+AGG + chr6.1:74818041-74818060 None:intergenic 60.0%
CCGGTGAGACTTCTGAGCCA+TGG - chr6.1:74820504-74820523 MS.gene052426:CDS 60.0%
CCTCGGACACACCCCACTTA+TGG - chr6.1:74818038-74818057 MS.gene052426:intron 60.0%
!! ATGTGGGCTGGACCAGTGCT+TGG - chr6.1:74821573-74821592 MS.gene052426:CDS 60.0%
!! TGTGGGCTGGACCAGTGCTT+GGG - chr6.1:74821574-74821593 MS.gene052426:CDS 60.0%
CGTGTCACACCGACAGGCAG+CGG + chr6.1:74821761-74821780 None:intergenic 65.0%
GTGTCACACCGACAGGCAGC+GGG + chr6.1:74821760-74821779 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 74817802 74821996 74817802 ID=MS.gene052426
chr6.1 mRNA 74817802 74821996 74817802 ID=MS.gene052426.t1;Parent=MS.gene052426
chr6.1 exon 74821923 74821996 74821923 ID=MS.gene052426.t1.exon1;Parent=MS.gene052426.t1
chr6.1 CDS 74821923 74821996 74821923 ID=cds.MS.gene052426.t1;Parent=MS.gene052426.t1
chr6.1 exon 74821486 74821645 74821486 ID=MS.gene052426.t1.exon2;Parent=MS.gene052426.t1
chr6.1 CDS 74821486 74821645 74821486 ID=cds.MS.gene052426.t1;Parent=MS.gene052426.t1
chr6.1 exon 74821195 74821219 74821195 ID=MS.gene052426.t1.exon3;Parent=MS.gene052426.t1
chr6.1 CDS 74821195 74821219 74821195 ID=cds.MS.gene052426.t1;Parent=MS.gene052426.t1
chr6.1 exon 74821014 74821103 74821014 ID=MS.gene052426.t1.exon4;Parent=MS.gene052426.t1
chr6.1 CDS 74821014 74821103 74821014 ID=cds.MS.gene052426.t1;Parent=MS.gene052426.t1
chr6.1 exon 74820466 74820637 74820466 ID=MS.gene052426.t1.exon5;Parent=MS.gene052426.t1
chr6.1 CDS 74820466 74820637 74820466 ID=cds.MS.gene052426.t1;Parent=MS.gene052426.t1
chr6.1 exon 74820272 74820345 74820272 ID=MS.gene052426.t1.exon6;Parent=MS.gene052426.t1
chr6.1 CDS 74820272 74820345 74820272 ID=cds.MS.gene052426.t1;Parent=MS.gene052426.t1
chr6.1 exon 74819541 74819610 74819541 ID=MS.gene052426.t1.exon7;Parent=MS.gene052426.t1
chr6.1 CDS 74819541 74819610 74819541 ID=cds.MS.gene052426.t1;Parent=MS.gene052426.t1
chr6.1 exon 74818774 74818845 74818774 ID=MS.gene052426.t1.exon8;Parent=MS.gene052426.t1
chr6.1 CDS 74818774 74818845 74818774 ID=cds.MS.gene052426.t1;Parent=MS.gene052426.t1
chr6.1 exon 74818549 74818685 74818549 ID=MS.gene052426.t1.exon9;Parent=MS.gene052426.t1
chr6.1 CDS 74818549 74818685 74818549 ID=cds.MS.gene052426.t1;Parent=MS.gene052426.t1
chr6.1 exon 74818163 74818236 74818163 ID=MS.gene052426.t1.exon10;Parent=MS.gene052426.t1
chr6.1 CDS 74818163 74818236 74818163 ID=cds.MS.gene052426.t1;Parent=MS.gene052426.t1
chr6.1 exon 74817802 74817857 74817802 ID=MS.gene052426.t1.exon11;Parent=MS.gene052426.t1
chr6.1 CDS 74817802 74817857 74817802 ID=cds.MS.gene052426.t1;Parent=MS.gene052426.t1
Gene Sequence

>MS.gene052426

GTTTTAAAGCATGCAAAGTTGGAAAAGACTGTTTGGGAGCACATGGTGTTTTGAGAGTTAGCATGGGTTGCTTTGTATCCTTTATCGAATTAAATTTCAATTATGTGCATATATCTAGTCTAGTTTATAGTAAAAAAATTGCATGGGTTGCATAATAAGAATTATATTACGTCCTCGTGAACATAACTCAGTTGACATGAACAATGTATTGTTATATACAGAGATCGGTGTTCGAACCTCGGACACACCCCACTTATGGTCAATAGACTACTTAACAAAAAAAAAAGCATTATATTACCACTTGTGGTAAAACAATAATTATTATTAAAGTGTACCTTAATTCTTGATTAGCTATTTTTTATGATGATGTTTTGGTCAACTACAAGGACTTCTAAATTGAATGAACCAAGAGATACATGGCATTCTGGATGGTGGGCAACAAAGATTGTTCTATGGATTATATTGACAATCTTTACATTTTTACTCCCTTCTGAATTGATTGATCTCTATGGTTAGTAAATTTTGTCTCTCCAATTATTAATCTCTATGTTTGTAAATGTTTAAAAGACTGAATCAAGCCAAATGATTCAATCGGTTGAACCGTGAACCGACAATTTTAAAGCAATTGAACTATGACTTGAAGGTCTTGTTGGTTCGTTTTCTGGTTCAGTTTTAAAGTCATTGCTCTATTATATATTTAAAATAGGGAGAATTTTTTTTTTTGATGTTATCTTATTATTTGTCATTCCTCTGACATAATTACTTTTTTTTGGGCAGGGGAAGTTGCACATTTTGGAGCAGGGTATACTTTTCATTCTCGTATAAATGATTTAATCATATTATTTGTTGTAAATTGATAATTGAATGTTTTAATTATTATCTATATTTTTCAGGGTTTTCCTCCTAATTCAACTAGTAAGCATAATCAGCTTCATTACATGGCTAAATGATTGTTTTGCATCAGAAAAATATGCAGAAAGATGGTATAGTTTTCTCCTTTAATAAACTACTAGAATGCAAGTTCATCAACTTCATTTGTGATATGATGCATTATCCTATCCTATAAACATAATCTTAGTGTGTTAATTTTTTTGTATATTTTTAACATTTTTTAAAATTATAAATTATACACATCTTTTTTTGAAAAAAATTAAATTTGATGGTGATGCACTGTCACTAAATTAGTTGAACACCGACATCCAATGAAAACACATCATATCGTCACAGAAGTCTACTTTCGTCACACATGCCTACTTTATAATTGCATTTAAAAATAACTGCAACATATCTTCTTCTTTTTTAATTTTAAATATATTTTCTTTACTAACATTTCTAACAATTACTTAAATTTTTGTGCAGCCAAATCCATGTGATGGTATTTGCAACAGGTTCATATTTTATCTGCTTGGTTGGGATAATTTTGATGTACATTTGGTATGCACCAATACCATCATGCCTCCTCAACATTTTTTTCATCACTTGGACTTTAGTACTTCTCCAAATCATGACAAGCGTATCTCTTCACCCAAAAGTATGTTTTATTTAAGAGTCATTTATTTGTTCAACTCACCTTTTCTCCCATCATATGATTTTCATGTGAACCTTTTTTTCTAGGGAAATTTTCATGTGAACTTTTTTTTTGTGTCAATAGGTAAATGGTGGCATTTTAAGTCCAGGATTGATGGGGCTATATGTTGTCTTCCTTTGTTGGTGTGCAATCAGAAGGCAAGACTACCTTTTTTTGCATTTTTAAATTTCATATAGTTGAACATGTAGCTTATAATTTTTAGCATGTATTTAGTGTGCGGTGATAAAAATTGGTTTTGATTAAATTGGTTTTATAAAATTGATTTTTGTGATACATTGACTGAAAAAAAAATGATTTTTATCGATTTATGTTAGGGTTGTTTGCATCACAAGTTAGAAATATTAGGTTTTAGTAGAATTGACTTTAGGGTTGGAGTCAATTCTAATTTGAAAGTCAAATATAAAAAATTATGATCAAATCATGTTTGACTAACCTTAAATTTGATTTTCGAAAGTACAATCGTGGAAACGAACATAAGCTTAAAGTGTGTTTGGAACAAAGCGCGTTTAGAAAAAACACTGTAAGAAATCACGTCAACATAAAAGATTAGTTTTGTAGCTTCTACGTTTTCATATTAAAAATGTCTCGGGATACAAAAATTTGATTGCGAACGTGGTTCCAAACACATGCTTAGAATCTTTTCTCCAAAAGGAACCATGGATGCAATATAAAACACAAAATACCTGCATGCAATCATGTCTTATATTTTTAAATTTTAATTTATTGTTCATTTATTGCTTCAATGTTCCCTTTTTATTTCTATTGAATATAAATGTCAGAACATATTTGTGCATGCAGTGAACCAGAAGGAGATCAATGCATCAGAACATCAGGCACTGTAACCAAAACAGACTGGCAAAACATCATTGTAATATTTCTTCTTTCATGCTCTACTCAAATTCTAACTAAATGTTAGAACTATAAATCTACAAATATTTATGTTTGTTTATGTATTTTGGCCTCTTGTTACTTGAGAACATATTTTTCTAACTAGTTTGGCATAATATGCAAAATATCTTAGTCTCATGTCTTCAATCATTTTCCACCATCTTGTGACATCATAATAATATCTATTATAATAATCAATATTGTCATAACTTAACCAGAGAAGAAACCGGTGAGACTTCTGAGCCATGGTTCAATTCGTCTAATCGGTTAAACTAGGGTTGAATCAAATGACCAATAAATTAAAAAATTCATACAAACCAATTGTGGTTCAACTTGGTTCGATCTAGCTCTACAAAACTGTGAATCAACTGTGGTTGAACCAACCTAGAAGACTAGTTGATTCCTAATTCAACCAGTTGAATCGACCGGTTCGGTCCAGTTTTGACAACATTGCTTAAGTCATTTACTATGTGATAAGATGGTAAAATATGATTAGATGTTTGTTGTAAACTTGTTTACACACTCTAGAGTTCTTAAACCATGTTTTCTTTTTGTCTTTTGTTGTCATTGTACATTCTTTTTTGAAGCACATATATAAGATTTATTTTTATAAAACACATGATCTAACACTACTGTCTTCAATGTTGGCTGACATGTGACAATAACTGTTGGCAGAGCTTTGTTATTGGAATACTAGCAATAGTTATTGCAACATTTTCAACAGGCATAGATTCTAAATGCTTTCAGGTTTGTTTCAATATTAAAATCAAACTTTTGAATTTTAATATCATGTTTCTGCAATACAACATATCTGACACATATCATTAATTTGCAGCTAAGGAAGGGTGATAAACCAGCAGAAGAAGATGATGTTCCATATGGATATGGTTTTTTCCATTTTGTTTTTGCCACAGGAGCTATGTACTTTGCAATGCTATTGATTGGATGGAATACTCATCATTCAATGAGAAAGTATGGTTCCATCTTGTTCATGTTATGGGCATCATACTTGGTTTTTTAAGTTTTGTTTCGTCAGAAAAGAAAAAGAAGAGGGAAAATCCAATCAAATACTATATTAGTATATACAAATCTAGATGCAACCTAATAAATATGTTTCCAATGAAGCTTAGGTGTATTATTTGGCTGACATTATAGACTAGTATTATTAGTCATCAATGAAGCATGTTTATTTGGTGTTGACTTTTCTTTATTTTATTTTGTTGATAATTGACTCTATCTTGCATTAAGAGCAGCTATTAATTTTTTGGAAATATTGTTCTGCAGATGGTCACTTGATGTGGGCTGGACCAGTGCTTGGGTCAGAATAGTAAATGAATGGTTGGCAGTCTGTGTATACTGTAAGTTTTTTTTCTTCCTTTTTTCTGAAGCTATATCATATCATCAATCAAAAATAAAAATTGAATCCGAGAGTTTTAACCTATGTAGTACCAACACTTCAAATTGAAGACATATTCAATGCCCGCTGCCTGTCGGTGTGACACGACACTTAACACATAGTTACATTCAATTACTTTACTTTCATTTTTTAAACTACTATTGTTGTCATTGTCAGTGTTTCATAGGGTTTTTTTAGTGAAAAGTTTCATAGGTTCTATTGTTCTAATGCACAACAACTAATGGAAGCTTCTTATCATTTTGACAGTATGGATGCTGATAGCTCCAATTGTATGGAAGGCAAGACAGACTGAATCTACATGA

Protein sequence

>MS.gene052426.t1

VLKHAKLEKTVWEHMVFUELAWVAFYFLUUCFGQLQGLLNUMNQEIHGILDGGQQRLFYGLYUQSLHFYSLLNULISMGKLHILEQGFSSUFNUUAUSASLHGUMIVLHQKNMQKDAKSMUWYLQQVHILSAWLGUFUCTFGMHQYHHASSTFFSSLGLUYFSKSUQAYLFTQKUMVAFUVQDUWGYMLSSFVGVQSEVNQKEINASEHQALUPKQTGKTSLALLLEYUQULLQHFQQAUILNAFSUGRVINQQKKMMFHMDMVFSILFLPQELCTLQCYULDGILIIQUENGHLMWAGPVLGSEUUMNGWQSVYTYGCUULQLYGRQDRLNLH