Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66485.t1 | XP_013465961.1 | 91.3 | 652 | 43 | 2 | 1 | 638 | 1 | 652 | 1.10E-295 | 1025.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66485.t1 | Q6AWY3 | 47.3 | 518 | 198 | 17 | 123 | 632 | 145 | 595 | 7.7e-83 | 309.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66485.t1 | A0A072VEY4 | 91.3 | 652 | 43 | 2 | 1 | 638 | 1 | 652 | 8.2e-296 | 1025.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene66485.t1 | TF | GRF |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051667 | MS.gene66485 | 0.963151 | 9.81E-122 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66485.t1 | MTR_1g017490 | 95.245 | 652 | 17 | 4 | 1 | 638 | 1 | 652 | 0.0 | 1249 |
| MS.gene66485.t1 | MTR_1g017490 | 96.146 | 519 | 14 | 1 | 126 | 638 | 1 | 519 | 0.0 | 1022 |
| MS.gene66485.t1 | MTR_2g041430 | 58.407 | 113 | 47 | 0 | 130 | 242 | 7 | 119 | 1.62e-40 | 152 |
| MS.gene66485.t1 | MTR_2g041430 | 58.407 | 113 | 47 | 0 | 130 | 242 | 7 | 119 | 1.70e-40 | 152 |
| MS.gene66485.t1 | MTR_2g041430 | 58.407 | 113 | 47 | 0 | 130 | 242 | 7 | 119 | 1.74e-40 | 152 |
| MS.gene66485.t1 | MTR_8g020560 | 55.357 | 112 | 46 | 1 | 131 | 242 | 12 | 119 | 1.63e-39 | 149 |
| MS.gene66485.t1 | MTR_4g125490 | 49.669 | 151 | 66 | 3 | 130 | 279 | 9 | 150 | 2.72e-39 | 150 |
| MS.gene66485.t1 | MTR_0001s0490 | 50.000 | 142 | 57 | 3 | 130 | 271 | 25 | 152 | 6.93e-37 | 141 |
| MS.gene66485.t1 | MTR_5g027030 | 57.522 | 113 | 32 | 2 | 130 | 242 | 16 | 112 | 6.79e-36 | 138 |
| MS.gene66485.t1 | MTR_7g104050 | 55.652 | 115 | 47 | 2 | 128 | 242 | 76 | 186 | 9.46e-33 | 130 |
| MS.gene66485.t1 | MTR_7g104050 | 55.556 | 117 | 44 | 3 | 128 | 242 | 76 | 186 | 1.03e-32 | 130 |
| MS.gene66485.t1 | MTR_3g092330 | 54.783 | 115 | 26 | 3 | 130 | 242 | 113 | 203 | 5.27e-32 | 131 |
| MS.gene66485.t1 | MTR_8g035910 | 42.857 | 112 | 46 | 2 | 131 | 242 | 50 | 143 | 3.99e-20 | 94.0 |
| MS.gene66485.t1 | MTR_8g035910 | 35.878 | 131 | 77 | 4 | 145 | 271 | 243 | 370 | 1.44e-11 | 67.4 |
| MS.gene66485.t1 | MTR_8g035640 | 50.000 | 58 | 25 | 1 | 183 | 236 | 32 | 89 | 2.29e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66485.t1 | AT2G22840 | 38.272 | 648 | 225 | 23 | 27 | 640 | 22 | 528 | 7.55e-92 | 294 |
| MS.gene66485.t1 | AT4G37740 | 38.315 | 629 | 211 | 27 | 32 | 614 | 28 | 525 | 1.05e-84 | 276 |
| MS.gene66485.t1 | AT3G13960 | 51.852 | 135 | 48 | 2 | 130 | 264 | 16 | 133 | 4.10e-37 | 143 |
| MS.gene66485.t1 | AT2G36400 | 56.522 | 115 | 49 | 1 | 128 | 242 | 74 | 187 | 1.46e-33 | 133 |
| MS.gene66485.t1 | AT2G06200 | 45.342 | 161 | 75 | 4 | 130 | 278 | 45 | 204 | 2.55e-32 | 127 |
| MS.gene66485.t1 | AT2G06200 | 45.342 | 161 | 75 | 4 | 130 | 278 | 6 | 165 | 2.77e-32 | 125 |
| MS.gene66485.t1 | AT3G52910 | 50.413 | 121 | 48 | 2 | 128 | 242 | 80 | 194 | 7.11e-31 | 125 |
| MS.gene66485.t1 | AT4G24150 | 48.696 | 115 | 59 | 0 | 128 | 242 | 109 | 223 | 4.31e-26 | 112 |
| MS.gene66485.t1 | AT4G24150 | 44.138 | 145 | 74 | 2 | 101 | 242 | 121 | 261 | 7.78e-26 | 111 |
| MS.gene66485.t1 | AT5G53660 | 43.939 | 132 | 53 | 2 | 124 | 255 | 53 | 163 | 8.70e-24 | 103 |
| MS.gene66485.t1 | AT4G24150 | 45.714 | 140 | 51 | 5 | 128 | 242 | 147 | 286 | 2.12e-23 | 104 |
| MS.gene66485.t1 | AT2G45480 | 49.074 | 108 | 47 | 3 | 134 | 239 | 28 | 129 | 2.83e-22 | 98.6 |
| MS.gene66485.t1 | AT2G45480 | 49.074 | 108 | 47 | 3 | 134 | 239 | 28 | 129 | 1.87e-21 | 98.2 |
| MS.gene66485.t1 | AT2G45480 | 46.479 | 71 | 36 | 2 | 198 | 268 | 306 | 374 | 5.33e-13 | 72.0 |
| MS.gene66485.t1 | AT2G45480 | 49.074 | 108 | 47 | 3 | 134 | 239 | 26 | 127 | 1.87e-21 | 97.8 |
| MS.gene66485.t1 | AT2G45480 | 46.479 | 71 | 36 | 2 | 198 | 268 | 304 | 372 | 5.24e-13 | 72.0 |
| MS.gene66485.t1 | AT2G06200 | 46.237 | 93 | 44 | 2 | 192 | 278 | 1 | 93 | 1.91e-16 | 78.2 |
Find 150 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGAACTCTCCCAAGTTAT+TGG | 0.152774 | 1.4:+5276777 | None:intergenic |
| AAGAATATGAACAACCTTAT+TGG | 0.157641 | 1.4:-5277973 | MS.gene66485:CDS |
| CATAAGACAATGCAGCATTT+TGG | 0.211480 | 1.4:+5280061 | None:intergenic |
| AATAAGGTTGTTCATATTCT+TGG | 0.221832 | 1.4:+5277975 | None:intergenic |
| AACCATCAGTCATGAGATTT+AGG | 0.225448 | 1.4:+5276658 | None:intergenic |
| GTGATCATCATTTGCATTGT+AGG | 0.266573 | 1.4:+5276710 | None:intergenic |
| CTTGGTGGAGTGAGTTTAGA+AGG | 0.269348 | 1.4:-5280348 | MS.gene66485:CDS |
| TCTTCATCTATTGTTGTTCC+TGG | 0.272838 | 1.4:-5278045 | MS.gene66485:CDS |
| TCTGTTCTCCTACACCTTCC+TGG | 0.276185 | 1.4:+5278285 | None:intergenic |
| ATACTACAAAGCAAGCTAAT+TGG | 0.301022 | 1.4:-5276803 | MS.gene66485:CDS |
| CTCCTACACCTTCCTGGTTC+CGG | 0.301178 | 1.4:+5278291 | None:intergenic |
| TCATATTCTTGGAATGTTCT+TGG | 0.302632 | 1.4:+5277986 | None:intergenic |
| ACAGAAAACCTCCACTTTGC+TGG | 0.307229 | 1.4:-5277177 | MS.gene66485:CDS |
| AAGCATTATCTTGTCCAATA+AGG | 0.312606 | 1.4:+5277959 | None:intergenic |
| GAGCCTGCATCTCGGTTTGT+AGG | 0.333439 | 1.4:+5277122 | None:intergenic |
| GTTTGAACAGGTTATAGTTC+TGG | 0.342225 | 1.4:-5279286 | MS.gene66485:intron |
| AGTTTGTGCAATGATCTTCT+AGG | 0.349835 | 1.4:-5276498 | MS.gene66485:CDS |
| TGGAGTGAGTTTAGAAGGTT+TGG | 0.355173 | 1.4:-5280343 | MS.gene66485:CDS |
| TCCTCGAGGAACAATGAATT+CGG | 0.355251 | 1.4:-5277233 | MS.gene66485:CDS |
| ACACCTAACCCCATTTGAAT+AGG | 0.359219 | 1.4:+5276870 | None:intergenic |
| AACTCACACTTTCACCTCTT+AGG | 0.372743 | 1.4:-5276911 | MS.gene66485:CDS |
| CTAATTGGATTCCAATAACT+TGG | 0.378217 | 1.4:-5276788 | MS.gene66485:CDS |
| TTGATTGATGCAGTGGGATG+GGG | 0.381772 | 1.4:-5278348 | MS.gene66485:intron |
| TTGGTGATCTGAGTGAGTTT+TGG | 0.385367 | 1.4:+5277064 | None:intergenic |
| GTGAAGATGAACCGAAGGTT+CGG | 0.390750 | 1.4:+5277150 | None:intergenic |
| TTCCACCAGTGGTGAGAGCC+TGG | 0.403872 | 1.4:+5278151 | None:intergenic |
| CCACAGGCTTTCTTGAACGA+TGG | 0.404313 | 1.4:+5278187 | None:intergenic |
| GAAATAGACCCTATTCAAAT+GGG | 0.406443 | 1.4:-5276879 | MS.gene66485:CDS |
| AGAAATAGACCCTATTCAAA+TGG | 0.409611 | 1.4:-5276880 | MS.gene66485:CDS |
| AAGCCTGTGGAAGGCCAATC+TGG | 0.411103 | 1.4:-5278174 | MS.gene66485:CDS |
| ACCATCAGTCATGAGATTTA+GGG | 0.418748 | 1.4:+5276659 | None:intergenic |
| TGGCCAGATTGGCCTTCCAC+AGG | 0.420452 | 1.4:+5278171 | None:intergenic |
| TCTGGCCAGGCTCTCACCAC+TGG | 0.421683 | 1.4:-5278156 | MS.gene66485:CDS |
| TGAAGATGAACCGAAGGTTC+GGG | 0.426118 | 1.4:+5277151 | None:intergenic |
| TTTGATTGATGCAGTGGGAT+GGG | 0.426520 | 1.4:-5278349 | MS.gene66485:intron |
| AACAACACCGATCCGGAACC+AGG | 0.428029 | 1.4:-5278303 | MS.gene66485:CDS |
| TTGCTGGGAACCCGAACCTT+CGG | 0.432840 | 1.4:-5277161 | MS.gene66485:CDS |
| AATAACTTGGGAGAGTTCAA+TGG | 0.434636 | 1.4:-5276775 | MS.gene66485:CDS |
| TAACTGCACATACATGCATT+TGG | 0.440306 | 1.4:+5279091 | None:intergenic |
| CACCTAACCCCATTTGAATA+GGG | 0.440538 | 1.4:+5276871 | None:intergenic |
| CCTCGAGGAACAATGAATTC+GGG | 0.441663 | 1.4:-5277232 | MS.gene66485:CDS |
| TGGTGAGAGCCTGGCCAGAT+TGG | 0.445236 | 1.4:+5278160 | None:intergenic |
| AAATCTCATGACTGATGGTT+GGG | 0.448530 | 1.4:-5276655 | MS.gene66485:CDS |
| ATGGATGGAGTTGGAACATC+AGG | 0.449683 | 1.4:-5279230 | MS.gene66485:CDS |
| TGTGGAAGGCCAATCTGGCC+AGG | 0.452012 | 1.4:-5278169 | MS.gene66485:CDS |
| AATGCAAATGATGATCACTA+TGG | 0.452218 | 1.4:-5276705 | MS.gene66485:CDS |
| TTACTTAAACAAGAGAGATC+TGG | 0.453042 | 1.4:-5280267 | MS.gene66485:CDS |
| TTCTGCCCTTGGACTACTAC+CGG | 0.453252 | 1.4:+5276548 | None:intergenic |
| AGTAGTAGTAGCTGTATTTG+TGG | 0.454473 | 1.4:+5278128 | None:intergenic |
| GTCCTTCAAAAGACTGCATT+CGG | 0.456928 | 1.4:-5276591 | MS.gene66485:CDS |
| AGAAAAGCCCTTGATTCTGC+TGG | 0.462621 | 1.4:-5279145 | MS.gene66485:CDS |
| CTGCTGCCAACACCATCAAC+AGG | 0.462743 | 1.4:-5277933 | MS.gene66485:intron |
| CAGAAAACCTCCACTTTGCT+GGG | 0.465527 | 1.4:-5277176 | MS.gene66485:CDS |
| TTCTGACCTGTTGATGGTGT+TGG | 0.470559 | 1.4:+5277927 | None:intergenic |
| ATTTCTCTTGATAGCCTAAG+AGG | 0.472531 | 1.4:+5276897 | None:intergenic |
| CCGGTTGGCGATGATCCAAT+TGG | 0.472751 | 1.4:+5276615 | None:intergenic |
| TCTAGAGTGGGTGGCAGCAT+TGG | 0.473483 | 1.4:+5277317 | None:intergenic |
| TCTAGTTACAACAGAAATAC+AGG | 0.475853 | 1.4:-5280018 | MS.gene66485:intron |
| TGGTACAACAACAATGGATC+TGG | 0.476248 | 1.4:-5280291 | MS.gene66485:CDS |
| AGCCTGCATCTCGGTTTGTA+GGG | 0.477728 | 1.4:+5277123 | None:intergenic |
| GGGATGGGGAGGATTCCATC+TGG | 0.478367 | 1.4:-5278334 | MS.gene66485:CDS |
| CTTTGGTTTCAACTCTAGAG+TGG | 0.478958 | 1.4:+5277304 | None:intergenic |
| TGTTTCTAAATGGATCTTGG+TGG | 0.483588 | 1.4:-5280363 | None:intergenic |
| TAGATAAGCCAGCAGAATCA+AGG | 0.485816 | 1.4:+5279137 | None:intergenic |
| ATTCAAATGGGGTTAGGTGT+TGG | 0.489350 | 1.4:-5276867 | MS.gene66485:CDS |
| AGTTCAATGGGTGGTCCACT+TGG | 0.489957 | 1.4:-5276762 | MS.gene66485:CDS |
| AACCACAATAGTCCTCCAAT+TGG | 0.490636 | 1.4:-5276630 | MS.gene66485:CDS |
| CCAATTGGATCATCGCCAAC+CGG | 0.498011 | 1.4:-5276615 | MS.gene66485:CDS |
| AGCTCGACATGCAGTCTGAT+AGG | 0.498577 | 1.4:-5277007 | MS.gene66485:CDS |
| GACCATTCACACCTTCTCAA+TGG | 0.498886 | 1.4:-5279249 | MS.gene66485:CDS |
| GGTGGCAGCATTGGTAGTGC+AGG | 0.500285 | 1.4:+5277326 | None:intergenic |
| GACCCTATTCAAATGGGGTT+AGG | 0.500567 | 1.4:-5276873 | MS.gene66485:CDS |
| TTCAACACCGATGACTTCCT+CGG | 0.501884 | 1.4:-5276970 | MS.gene66485:CDS |
| AACCCTACAAACCGAGATGC+AGG | 0.503273 | 1.4:-5277125 | MS.gene66485:CDS |
| TGATGAACCACTTGGAGTAA+TGG | 0.508265 | 1.4:+5278098 | None:intergenic |
| TTTGGTTTCAACTCTAGAGT+GGG | 0.508283 | 1.4:+5277305 | None:intergenic |
| TGAAGGGTTCAGAAGGGAAT+CGG | 0.508397 | 1.4:+5277199 | None:intergenic |
| AACAATAAAACAACTCAAGA+AGG | 0.516329 | 1.4:-5276525 | MS.gene66485:CDS |
| CAGGCTCTCAGCAATCCCTT+AGG | 0.516400 | 1.4:-5277106 | MS.gene66485:CDS |
| ATTGATGCAGTGGGATGGGG+AGG | 0.517801 | 1.4:-5278345 | MS.gene66485:intron |
| ATACTCGAACAACACCGATC+CGG | 0.522042 | 1.4:-5278310 | MS.gene66485:CDS |
| TATCCAAATCATGTTGGCAT+TGG | 0.526730 | 1.4:+5276270 | None:intergenic |
| AGTCGTCGATAAAATGCCTA+AGG | 0.528289 | 1.4:+5277090 | None:intergenic |
| ATCCATTGAGAAGGTGTGAA+TGG | 0.529637 | 1.4:+5279247 | None:intergenic |
| ATCTGCTTTGATGAACCACT+TGG | 0.531326 | 1.4:+5278090 | None:intergenic |
| ATAACTTGGGAGAGTTCAAT+GGG | 0.532863 | 1.4:-5276774 | MS.gene66485:CDS |
| TTTCTGTTGTAACTAGACAT+AGG | 0.533184 | 1.4:+5280024 | None:intergenic |
| TATAGTTCTGGAAGCATGCA+TGG | 0.536987 | 1.4:-5279274 | MS.gene66485:CDS |
| TAAATCTCATGACTGATGGT+TGG | 0.537129 | 1.4:-5276656 | MS.gene66485:CDS |
| GGAGAACAGATGGAAAGAAA+TGG | 0.537455 | 1.4:-5278272 | MS.gene66485:CDS |
| ACACCTTCCTGGTTCCGGAT+CGG | 0.539895 | 1.4:+5278296 | None:intergenic |
| TCATCTATTGTTGTTCCTGG+TGG | 0.540775 | 1.4:-5278042 | MS.gene66485:CDS |
| AAATCATGTTGGCATTGGTA+TGG | 0.546597 | 1.4:+5276275 | None:intergenic |
| AATGGGTGGTCCACTTGGAG+AGG | 0.548361 | 1.4:-5276757 | MS.gene66485:CDS |
| CACCAACATCATAACCGCTC+AGG | 0.548639 | 1.4:-5277047 | MS.gene66485:CDS |
| ATTCACACCTTCTCAATGGA+TGG | 0.550208 | 1.4:-5279245 | MS.gene66485:CDS |
| TGTTGTAACTAGACATAGGA+TGG | 0.561408 | 1.4:+5280028 | None:intergenic |
| ACCTTCTCAATGGATGGAGT+TGG | 0.562452 | 1.4:-5279239 | MS.gene66485:CDS |
| TCAGACTGCATGTCGAGCTC+CGG | 0.562970 | 1.4:+5277011 | None:intergenic |
| AGATAAGCCAGCAGAATCAA+GGG | 0.564902 | 1.4:+5279138 | None:intergenic |
| GGAACAACAATAGATGAAGA+AGG | 0.565252 | 1.4:+5278048 | None:intergenic |
| GATCTTCTAGGATCAACTCT+TGG | 0.567836 | 1.4:-5276486 | MS.gene66485:intron |
| ATGAAGTCCGAGGAAGTCAT+CGG | 0.569735 | 1.4:+5276963 | None:intergenic |
| GCCCTAAATCTCATGACTGA+TGG | 0.570545 | 1.4:-5276660 | MS.gene66485:CDS |
| GGCCAGGCTCTCACCACTGG+TGG | 0.570680 | 1.4:-5278153 | MS.gene66485:CDS |
| GGTTTCAACTCTAGAGTGGG+TGG | 0.570696 | 1.4:+5277308 | None:intergenic |
| TGTATTTGTGGTTCCACCAG+TGG | 0.570943 | 1.4:+5278140 | None:intergenic |
| GGAAGGTGTAGGAGAACAGA+TGG | 0.576607 | 1.4:-5278282 | MS.gene66485:CDS |
| CAACACTAGTGAGAGGATGC+AGG | 0.577864 | 1.4:-5277354 | MS.gene66485:CDS |
| AATAAATGGTACAACAACAA+TGG | 0.583357 | 1.4:-5280297 | MS.gene66485:CDS |
| CGTTCAAGAAAGCCTGTGGA+AGG | 0.583949 | 1.4:-5278183 | MS.gene66485:CDS |
| GGATGGGGAGGATTCCATCT+GGG | 0.587603 | 1.4:-5278333 | MS.gene66485:CDS |
| ACTTCAACCATTACTCCAAG+TGG | 0.590678 | 1.4:-5278105 | MS.gene66485:CDS |
| AATGATGATCACTATGGCAG+AGG | 0.596008 | 1.4:-5276699 | MS.gene66485:CDS |
| TAATTGGATTCCAATAACTT+GGG | 0.596671 | 1.4:-5276787 | MS.gene66485:CDS |
| GTTGGCGATGATCCAATTGG+AGG | 0.597813 | 1.4:+5276618 | None:intergenic |
| TCGGGTTCCCAGCAAAGTGG+AGG | 0.601917 | 1.4:+5277169 | None:intergenic |
| ACATACATGCATTTGGTCTG+AGG | 0.603882 | 1.4:+5279098 | None:intergenic |
| TTGGAAACAGTGTTGCCACC+AGG | 0.605229 | 1.4:+5278027 | None:intergenic |
| TTGATCAAAAGTACTGCGAA+AGG | 0.605510 | 1.4:-5278227 | MS.gene66485:CDS |
| TAGCGCCGGTAGTAGTCCAA+GGG | 0.611402 | 1.4:-5276553 | MS.gene66485:CDS |
| GTGTGCAAAGCTAAGAGTGT+TGG | 0.614661 | 1.4:+5278008 | None:intergenic |
| GTAGCGCCGGTAGTAGTCCA+AGG | 0.615873 | 1.4:-5276554 | MS.gene66485:CDS |
| CACCTGAGCGGTTATGATGT+TGG | 0.615910 | 1.4:+5277045 | None:intergenic |
| ATTGCTGAGAGCCTGCATCT+CGG | 0.615994 | 1.4:+5277114 | None:intergenic |
| CTAACATATCCAAATCATGT+TGG | 0.620967 | 1.4:+5276264 | None:intergenic |
| TCCAACTCCATCCATTGAGA+AGG | 0.621452 | 1.4:+5279238 | None:intergenic |
| CACTCTAGAGTTGAAACCAA+AGG | 0.624902 | 1.4:-5277303 | MS.gene66485:CDS |
| CAACATCATAACCGCTCAGG+TGG | 0.625010 | 1.4:-5277044 | MS.gene66485:CDS |
| GTCGTCGATAAAATGCCTAA+GGG | 0.628833 | 1.4:+5277091 | None:intergenic |
| TCACTTTCGAATAGTAGCGC+CGG | 0.636444 | 1.4:-5276567 | MS.gene66485:CDS |
| CCATCGTTCAAGAAAGCCTG+TGG | 0.641306 | 1.4:-5278187 | MS.gene66485:CDS |
| GGTTCGGGTTCCCAGCAAAG+TGG | 0.643195 | 1.4:+5277166 | None:intergenic |
| TTTCTGTGAAGGGTTCAGAA+GGG | 0.643231 | 1.4:+5277193 | None:intergenic |
| CCCGAATTCATTGTTCCTCG+AGG | 0.649213 | 1.4:+5277232 | None:intergenic |
| AGATGAAGAACCTCTCCAAG+TGG | 0.649574 | 1.4:+5276747 | None:intergenic |
| ATCCGGAACCAGGAAGGTGT+AGG | 0.650872 | 1.4:-5278293 | MS.gene66485:CDS |
| AGAATAACAACACTAGTGAG+AGG | 0.653602 | 1.4:-5277361 | MS.gene66485:CDS |
| ACACCGATCCGGAACCAGGA+AGG | 0.656785 | 1.4:-5278299 | MS.gene66485:CDS |
| TGTTGTTCGAGTATCCCAGA+TGG | 0.657354 | 1.4:+5278319 | None:intergenic |
| ATCAGTCATGAGATTTAGGG+CGG | 0.658516 | 1.4:+5276662 | None:intergenic |
| ATCCAATTGGAGGACTATTG+TGG | 0.673816 | 1.4:+5276628 | None:intergenic |
| ACTAGTGAGAGGATGCAGGA+TGG | 0.682389 | 1.4:-5277350 | MS.gene66485:CDS |
| AAATAGACCCTATTCAAATG+GGG | 0.682714 | 1.4:-5276878 | MS.gene66485:CDS |
| CGTGAACGACATGAAGTCCG+AGG | 0.693679 | 1.4:+5276953 | None:intergenic |
| ACTTGGGAGAGTTCAATGGG+TGG | 0.696784 | 1.4:-5276771 | MS.gene66485:CDS |
| ATAGGCATAAGCAAATGATG+AGG | 0.701369 | 1.4:+5279169 | None:intergenic |
| TGCGAAAGGCATATGAACAG+AGG | 0.714010 | 1.4:-5278213 | MS.gene66485:CDS |
| TTTCATATGATGAGTCCTCG+AGG | 0.724605 | 1.4:-5277247 | MS.gene66485:CDS |
| AGTTCTGGAAGCATGCATGG+AGG | 0.751541 | 1.4:-5279271 | MS.gene66485:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTAAAAAATTTATATATTT+TGG | - | chr1.4:5276685-5276704 | MS.gene66485:CDS | 0.0% |
| !!! | AAATTTATATATTTTGGATT+TGG | - | chr1.4:5276691-5276710 | MS.gene66485:CDS | 10.0% |
| !!! | TTTTTATTTATTTTCATGTA+AGG | + | chr1.4:5277124-5277143 | None:intergenic | 10.0% |
| !! | ATGATATTACATTACATATA+TGG | - | chr1.4:5280286-5280305 | MS.gene66485:CDS | 15.0% |
| !! | TATCTTTGTTAGTATTAATT+AGG | + | chr1.4:5277583-5277602 | None:intergenic | 15.0% |
| !! | TATGTATTTATGAATCTATA+TGG | - | chr1.4:5276723-5276742 | MS.gene66485:CDS | 15.0% |
| !! | TTGCATTATATTAGAAAATA+AGG | - | chr1.4:5277942-5277961 | MS.gene66485:CDS | 15.0% |
| !!! | AGTTATTTTTAACAAAATCA+AGG | + | chr1.4:5278767-5278786 | None:intergenic | 15.0% |
| !!! | ATTTTCTAATATAATGCAAA+GGG | + | chr1.4:5277941-5277960 | None:intergenic | 15.0% |
| !!! | ATTTTTTTTTCCAATCATTT+TGG | - | chr1.4:5277696-5277715 | MS.gene66485:intron | 15.0% |
| !!! | TATTTTCTAATATAATGCAA+AGG | + | chr1.4:5277942-5277961 | None:intergenic | 15.0% |
| !!! | TTGTAATTTTGGTTAATTTA+AGG | - | chr1.4:5277888-5277907 | MS.gene66485:intron | 15.0% |
| !! | AAATCAAATTTGTGTTTGAA+GGG | - | chr1.4:5277967-5277986 | MS.gene66485:CDS | 20.0% |
| !! | ATAAGGTTGTTATAGTTATA+AGG | - | chr1.4:5276772-5276791 | MS.gene66485:CDS | 20.0% |
| !! | ATTTATGAGCTATAATATGT+AGG | - | chr1.4:5277016-5277035 | MS.gene66485:CDS | 20.0% |
| !! | CTAACAAAGATAAACATTAT+TGG | - | chr1.4:5277591-5277610 | MS.gene66485:intron | 20.0% |
| !! | TATAGTACTAATCAATATGT+AGG | - | chr1.4:5278808-5278827 | MS.gene66485:intron | 20.0% |
| !! | TATATTCCGTTATTCATTTA+GGG | - | chr1.4:5279043-5279062 | MS.gene66485:intron | 20.0% |
| !! | TTATATTCCGTTATTCATTT+AGG | - | chr1.4:5279042-5279061 | MS.gene66485:intron | 20.0% |
| !!! | AAAAGCTACAAAATTTTGAT+TGG | - | chr1.4:5277043-5277062 | MS.gene66485:CDS | 20.0% |
| !!! | AAGGATGTTTTTTGTAATTT+TGG | - | chr1.4:5277877-5277896 | MS.gene66485:intron | 20.0% |
| !!! | ATCAACTTTTTTTTGTGTTT+TGG | - | chr1.4:5277262-5277281 | MS.gene66485:CDS | 20.0% |
| !!! | ATGGAAATATATTTTTTGAG+TGG | - | chr1.4:5276828-5276847 | MS.gene66485:CDS | 20.0% |
| !!! | TACATATTGATTAGTACTAT+AGG | + | chr1.4:5278809-5278828 | None:intergenic | 20.0% |
| !!! | TTATTTATTTTCATGTAAGG+AGG | + | chr1.4:5277121-5277140 | None:intergenic | 20.0% |
| !!! | TTTGTTACTTTTGTGTATAA+GGG | - | chr1.4:5279163-5279182 | MS.gene66485:CDS | 20.0% |
| !!! | TTTTGTTACTTTTGTGTATA+AGG | - | chr1.4:5279162-5279181 | MS.gene66485:CDS | 20.0% |
| ! | AACAATAAAACAACTCAAGA+AGG | - | chr1.4:5280107-5280126 | MS.gene66485:CDS | 25.0% |
| ! | AACATTAAACATATCATGTG+AGG | - | chr1.4:5278239-5278258 | MS.gene66485:CDS | 25.0% |
| ! | AAGAATATGAACAACCTTAT+TGG | - | chr1.4:5278659-5278678 | MS.gene66485:intron | 25.0% |
| ! | AATAAATGGTACAACAACAA+TGG | - | chr1.4:5276335-5276354 | MS.gene66485:intron | 25.0% |
| ! | AATAAGGTTGTTCATATTCT+TGG | + | chr1.4:5278660-5278679 | None:intergenic | 25.0% |
| ! | AATCTATATGGTATCCATTT+GGG | - | chr1.4:5276735-5276754 | MS.gene66485:CDS | 25.0% |
| ! | AATCTCACACATTCAATTTA+AGG | + | chr1.4:5277723-5277742 | None:intergenic | 25.0% |
| ! | AATGTACCAAAATTGCAAAA+AGG | - | chr1.4:5277761-5277780 | MS.gene66485:intron | 25.0% |
| ! | AATTTAAGGACCAAAATGAT+TGG | + | chr1.4:5277709-5277728 | None:intergenic | 25.0% |
| ! | ATCCTGAGTCAAAAAATAAA+TGG | - | chr1.4:5276321-5276340 | MS.gene66485:intron | 25.0% |
| ! | ATGTACCAAAATTGCAAAAA+GGG | - | chr1.4:5277762-5277781 | MS.gene66485:intron | 25.0% |
| ! | ATTAATTAGGCAAGGAAAAA+GGG | + | chr1.4:5277570-5277589 | None:intergenic | 25.0% |
| ! | CAAATCAAATTTGTGTTTGA+AGG | - | chr1.4:5277966-5277985 | MS.gene66485:CDS | 25.0% |
| ! | CTTCAAACACAAATTTGATT+TGG | + | chr1.4:5277968-5277987 | None:intergenic | 25.0% |
| ! | TAATTGGATTCCAATAACTT+GGG | - | chr1.4:5279845-5279864 | MS.gene66485:intron | 25.0% |
| ! | TAGAGAATCACAATCAATTA+CGG | + | chr1.4:5278988-5279007 | None:intergenic | 25.0% |
| ! | TAGTTGAAAACTAACAATCA+AGG | + | chr1.4:5278189-5278208 | None:intergenic | 25.0% |
| ! | TATTAATTAGGCAAGGAAAA+AGG | + | chr1.4:5277571-5277590 | None:intergenic | 25.0% |
| ! | TGAAAAAACAAATTGATCGT+TGG | - | chr1.4:5278072-5278091 | MS.gene66485:CDS | 25.0% |
| ! | TTAAGTCATGTCAAGAAAAA+AGG | - | chr1.4:5276861-5276880 | MS.gene66485:CDS | 25.0% |
| ! | TTGTTAGTATTAATTAGGCA+AGG | + | chr1.4:5277578-5277597 | None:intergenic | 25.0% |
| !! | TGTATTTTATGTCTCTATGA+CGG | - | chr1.4:5278944-5278963 | MS.gene66485:intron | 25.0% |
| !!! | AAAGATTCAGATTTTGAAGT+AGG | + | chr1.4:5276533-5276552 | None:intergenic | 25.0% |
| !!! | ACAGATTTTTTAGAGAAAGA+TGG | + | chr1.4:5277081-5277100 | None:intergenic | 25.0% |
| !!! | ATGAAAGATTGATTTTCCTT+TGG | + | chr1.4:5279348-5279367 | None:intergenic | 25.0% |
| !!! | CAGGTACAACATTTTTTTTT+AGG | - | chr1.4:5276633-5276652 | MS.gene66485:CDS | 25.0% |
| !!! | TACCATTTATTTTTTGACTC+AGG | + | chr1.4:5276326-5276345 | None:intergenic | 25.0% |
| !!! | TTGCAATTTTGGTACATTTA+GGG | + | chr1.4:5277759-5277778 | None:intergenic | 25.0% |
| !!! | TTTGCAATTTTGGTACATTT+AGG | + | chr1.4:5277760-5277779 | None:intergenic | 25.0% |
| !!! | TTTTTTTGTTTCTTGTTTGC+AGG | - | chr1.4:5279229-5279248 | MS.gene66485:CDS | 25.0% |
| AAAAAAAGGCTATAGTCTGA+AGG | + | chr1.4:5277210-5277229 | None:intergenic | 30.0% | |
| AAATAGACCCTATTCAAATG+GGG | - | chr1.4:5279754-5279773 | MS.gene66485:intron | 30.0% | |
| AAGCATTATCTTGTCCAATA+AGG | + | chr1.4:5278676-5278695 | None:intergenic | 30.0% | |
| AATGCAAATGATGATCACTA+TGG | - | chr1.4:5279927-5279946 | MS.gene66485:intron | 30.0% | |
| ACAGTATTCAACAAACATCA+AGG | + | chr1.4:5277328-5277347 | None:intergenic | 30.0% | |
| ACATAAAATACATGATGCCA+CGG | + | chr1.4:5278936-5278955 | None:intergenic | 30.0% | |
| AGAAATAGACCCTATTCAAA+TGG | - | chr1.4:5279752-5279771 | MS.gene66485:intron | 30.0% | |
| AGAGCACACAACAAAAAAAA+AGG | + | chr1.4:5277224-5277243 | None:intergenic | 30.0% | |
| ATACTACAAAGCAAGCTAAT+TGG | - | chr1.4:5279829-5279848 | MS.gene66485:intron | 30.0% | |
| ATCTATATGGTATCCATTTG+GGG | - | chr1.4:5276736-5276755 | MS.gene66485:CDS | 30.0% | |
| ATTAAACATATCATGTGAGG+TGG | - | chr1.4:5278242-5278261 | MS.gene66485:CDS | 30.0% | |
| ATTGCAAGAAATGTACCAAA+CGG | - | chr1.4:5279088-5279107 | MS.gene66485:intron | 30.0% | |
| CATCAAGGTAAAGTCAAAAA+AGG | + | chr1.4:5277313-5277332 | None:intergenic | 30.0% | |
| CTAATTGGATTCCAATAACT+TGG | - | chr1.4:5279844-5279863 | MS.gene66485:intron | 30.0% | |
| GAAATAGACCCTATTCAAAT+GGG | - | chr1.4:5279753-5279772 | MS.gene66485:intron | 30.0% | |
| GAATCTATATGGTATCCATT+TGG | - | chr1.4:5276734-5276753 | MS.gene66485:CDS | 30.0% | |
| GATTCATTCAAAAGTCAATG+TGG | - | chr1.4:5278022-5278041 | MS.gene66485:CDS | 30.0% | |
| GGGGAGCTAAAAAATTTATA+AGG | - | chr1.4:5276755-5276774 | MS.gene66485:CDS | 30.0% | |
| TAATCTAATCACATTCCGTT+TGG | + | chr1.4:5279106-5279125 | None:intergenic | 30.0% | |
| TCATATTCTTGGAATGTTCT+TGG | + | chr1.4:5278649-5278668 | None:intergenic | 30.0% | |
| TCTAGTTACAACAGAAATAC+AGG | - | chr1.4:5276614-5276633 | MS.gene66485:CDS | 30.0% | |
| TGTACCAAAATTGCAAAAAG+GGG | - | chr1.4:5277763-5277782 | MS.gene66485:intron | 30.0% | |
| TGTAGTCCCTAAATGAATAA+CGG | + | chr1.4:5279052-5279071 | None:intergenic | 30.0% | |
| TGTCAAGAAAAAAGGAACAT+AGG | - | chr1.4:5276869-5276888 | MS.gene66485:CDS | 30.0% | |
| TGTGTATAAGGGATAAATTC+AGG | - | chr1.4:5279174-5279193 | MS.gene66485:CDS | 30.0% | |
| TGTTTCTTATAGTTTAGTGC+AGG | + | chr1.4:5277812-5277831 | None:intergenic | 30.0% | |
| TTACTTAAACAAGAGAGATC+TGG | - | chr1.4:5276365-5276384 | MS.gene66485:intron | 30.0% | |
| TTGTTGAATACTGTTTGAAC+AGG | - | chr1.4:5277334-5277353 | MS.gene66485:CDS | 30.0% | |
| TTTCTGTTGTAACTAGACAT+AGG | + | chr1.4:5276611-5276630 | None:intergenic | 30.0% | |
| ! | ATAAGACAATGCAGCATTTT+GGG | + | chr1.4:5276573-5276592 | None:intergenic | 30.0% |
| ! | CTTATCTTCTTCCTGTTTTA+GGG | - | chr1.4:5276938-5276957 | MS.gene66485:CDS | 30.0% |
| ! | TCTTATCTTCTTCCTGTTTT+AGG | - | chr1.4:5276937-5276956 | MS.gene66485:CDS | 30.0% |
| ! | TTTTTGCACAGTATACTAGA+GGG | - | chr1.4:5276978-5276997 | MS.gene66485:CDS | 30.0% |
| !! | ATGTTTTTGATTGATGCAGT+GGG | - | chr1.4:5278278-5278297 | MS.gene66485:CDS | 30.0% |
| !! | TATGTTTTTGATTGATGCAG+TGG | - | chr1.4:5278277-5278296 | MS.gene66485:CDS | 30.0% |
| !! | TGAAAGTGTGAGTTTTTCAT+TGG | + | chr1.4:5279715-5279734 | None:intergenic | 30.0% |
| !!! | AAATTTTTTAGCTCCCCAAA+TGG | + | chr1.4:5276752-5276771 | None:intergenic | 30.0% |
| !!! | ACTACACTTTTTTCTTCTGA+TGG | - | chr1.4:5276479-5276498 | MS.gene66485:intron | 30.0% |
| AAATCTCATGACTGATGGTT+GGG | - | chr1.4:5279977-5279996 | MS.gene66485:intron | 35.0% | |
| AAATTGCAAAAAGGGGCTAA+TGG | - | chr1.4:5277770-5277789 | MS.gene66485:intron | 35.0% | |
| AACCATCAGTCATGAGATTT+AGG | + | chr1.4:5279977-5279996 | None:intergenic | 35.0% | |
| AATAACTTGGGAGAGTTCAA+TGG | - | chr1.4:5279857-5279876 | MS.gene66485:intron | 35.0% | |
| ACCATCAGTCATGAGATTTA+GGG | + | chr1.4:5279976-5279995 | None:intergenic | 35.0% | |
| AGAATAACAACACTAGTGAG+AGG | - | chr1.4:5279271-5279290 | MS.gene66485:CDS | 35.0% | |
| AGTAGTAGTAGCTGTATTTG+TGG | + | chr1.4:5278507-5278526 | None:intergenic | 35.0% | |
| AGTTTGTGCAATGATCTTCT+AGG | - | chr1.4:5280134-5280153 | MS.gene66485:CDS | 35.0% | |
| ATAACTTGGGAGAGTTCAAT+GGG | - | chr1.4:5279858-5279877 | MS.gene66485:intron | 35.0% | |
| ATACTTCCTTTACTCCTTAG+AGG | - | chr1.4:5280174-5280193 | MS.gene66485:CDS | 35.0% | |
| ATAGGCATAAGCAAATGATG+AGG | + | chr1.4:5277466-5277485 | None:intergenic | 35.0% | |
| ATATGTGAATTGTTACGCTG+TGG | + | chr1.4:5278002-5278021 | None:intergenic | 35.0% | |
| ATGTAAGGAGGATGTAGAAA+AGG | + | chr1.4:5277109-5277128 | None:intergenic | 35.0% | |
| ATTGAACTCTCCCAAGTTAT+TGG | + | chr1.4:5279858-5279877 | None:intergenic | 35.0% | |
| CTTGACAAGAGATACATTCA+AGG | - | chr1.4:5277858-5277877 | MS.gene66485:intron | 35.0% | |
| GGAACAACAATAGATGAAGA+AGG | + | chr1.4:5278587-5278606 | None:intergenic | 35.0% | |
| GTATGATTCTACAGTACTGT+TGG | - | chr1.4:5276794-5276813 | MS.gene66485:CDS | 35.0% | |
| GTGATCATCATTTGCATTGT+AGG | + | chr1.4:5279925-5279944 | None:intergenic | 35.0% | |
| GTTGTAGATCAGTTTAGTCT+TGG | + | chr1.4:5277839-5277858 | None:intergenic | 35.0% | |
| GTTTGAACAGGTTATAGTTC+TGG | - | chr1.4:5277346-5277365 | MS.gene66485:CDS | 35.0% | |
| TAAATCTCATGACTGATGGT+TGG | - | chr1.4:5279976-5279995 | MS.gene66485:intron | 35.0% | |
| TAACTGCACATACATGCATT+TGG | + | chr1.4:5277544-5277563 | None:intergenic | 35.0% | |
| TAAGGACTATAGTGATAGCA+AGG | - | chr1.4:5277906-5277925 | MS.gene66485:intron | 35.0% | |
| TGATGTCATCAACTCATCAT+TGG | - | chr1.4:5278211-5278230 | MS.gene66485:CDS | 35.0% | |
| TGTTGTAACTAGACATAGGA+TGG | + | chr1.4:5276607-5276626 | None:intergenic | 35.0% | |
| TTCTTCATCTTGTTCCTCTA+AGG | + | chr1.4:5280191-5280210 | None:intergenic | 35.0% | |
| ! | AAACAAATTAGAGTGTCACG+AGG | - | chr1.4:5278880-5278899 | MS.gene66485:intron | 35.0% |
| ! | AACAAATTAGAGTGTCACGA+GGG | - | chr1.4:5278881-5278900 | MS.gene66485:intron | 35.0% |
| ! | ATTTCTCTTGATAGCCTAAG+AGG | + | chr1.4:5279738-5279757 | None:intergenic | 35.0% |
| ! | CATAAGACAATGCAGCATTT+TGG | + | chr1.4:5276574-5276593 | None:intergenic | 35.0% |
| ! | GCAGTACTTTTGATCAACAA+CGG | + | chr1.4:5278402-5278421 | None:intergenic | 35.0% |
| ! | GTTTTTGCACAGTATACTAG+AGG | - | chr1.4:5276977-5276996 | MS.gene66485:CDS | 35.0% |
| ! | TCTTCATCTATTGTTGTTCC+TGG | - | chr1.4:5278587-5278606 | MS.gene66485:intron | 35.0% |
| ! | TTAGCCCCTTTTTGCAATTT+TGG | + | chr1.4:5277770-5277789 | None:intergenic | 35.0% |
| !! | GTTTTATTGTTTTCTGCCCT+TGG | + | chr1.4:5280098-5280117 | None:intergenic | 35.0% |
| !! | TGTGAGTTTTTCATTGGTTG+CGG | + | chr1.4:5279709-5279728 | None:intergenic | 35.0% |
| !! | TTGATCAAAAGTACTGCGAA+AGG | - | chr1.4:5278405-5278424 | MS.gene66485:intron | 35.0% |
| !! | TTTGGTTTCAACTCTAGAGT+GGG | + | chr1.4:5279330-5279349 | None:intergenic | 35.0% |
| AAAACCCATCTCCCTAAAAC+AGG | + | chr1.4:5276952-5276971 | None:intergenic | 40.0% | |
| AAACATATCATGTGAGGTGG+TGG | - | chr1.4:5278245-5278264 | MS.gene66485:CDS | 40.0% | |
| AACCACAATAGTCCTCCAAT+TGG | - | chr1.4:5280002-5280021 | MS.gene66485:intron | 40.0% | |
| AACTCACACTTTCACCTCTT+AGG | - | chr1.4:5279721-5279740 | MS.gene66485:intron | 40.0% | |
| AATGATGATCACTATGGCAG+AGG | - | chr1.4:5279933-5279952 | MS.gene66485:intron | 40.0% | |
| ACACCTAACCCCATTTGAAT+AGG | + | chr1.4:5279765-5279784 | None:intergenic | 40.0% | |
| ACATACATGCATTTGGTCTG+AGG | + | chr1.4:5277537-5277556 | None:intergenic | 40.0% | |
| ACTTCAACCATTACTCCAAG+TGG | - | chr1.4:5278527-5278546 | MS.gene66485:intron | 40.0% | |
| AGAATTGTGACTGAACATCG+TGG | - | chr1.4:5279016-5279035 | MS.gene66485:intron | 40.0% | |
| AGATAAGCCAGCAGAATCAA+GGG | + | chr1.4:5277497-5277516 | None:intergenic | 40.0% | |
| AGTCGTCGATAAAATGCCTA+AGG | + | chr1.4:5279545-5279564 | None:intergenic | 40.0% | |
| ATCAGTCATGAGATTTAGGG+CGG | + | chr1.4:5279973-5279992 | None:intergenic | 40.0% | |
| ATCCAATTGGAGGACTATTG+TGG | + | chr1.4:5280007-5280026 | None:intergenic | 40.0% | |
| ATCTGCTTTGATGAACCACT+TGG | + | chr1.4:5278545-5278564 | None:intergenic | 40.0% | |
| ATTCAAATGGGGTTAGGTGT+TGG | - | chr1.4:5279765-5279784 | MS.gene66485:intron | 40.0% | |
| ATTCACACCTTCTCAATGGA+TGG | - | chr1.4:5277387-5277406 | MS.gene66485:intron | 40.0% | |
| CACCTAACCCCATTTGAATA+GGG | + | chr1.4:5279764-5279783 | None:intergenic | 40.0% | |
| GATTCTACAGTACTGTTGGA+GGG | - | chr1.4:5276798-5276817 | MS.gene66485:CDS | 40.0% | |
| GGAGAACAGATGGAAAGAAA+TGG | - | chr1.4:5278360-5278379 | MS.gene66485:intron | 40.0% | |
| GGTTGAAAACATGTCATGTG+AGG | - | chr1.4:5278093-5278112 | MS.gene66485:CDS | 40.0% | |
| GTCCTTCAAAAGACTGCATT+CGG | - | chr1.4:5280041-5280060 | MS.gene66485:CDS | 40.0% | |
| GTCGTCGATAAAATGCCTAA+GGG | + | chr1.4:5279544-5279563 | None:intergenic | 40.0% | |
| TAGATAAGCCAGCAGAATCA+AGG | + | chr1.4:5277498-5277517 | None:intergenic | 40.0% | |
| TCCTCGAGGAACAATGAATT+CGG | - | chr1.4:5279399-5279418 | MS.gene66485:intron | 40.0% | |
| TGAAAACATGTCATGTGAGG+TGG | - | chr1.4:5278096-5278115 | MS.gene66485:CDS | 40.0% | |
| TGATGAACCACTTGGAGTAA+TGG | + | chr1.4:5278537-5278556 | None:intergenic | 40.0% | |
| TGATTCTACAGTACTGTTGG+AGG | - | chr1.4:5276797-5276816 | MS.gene66485:CDS | 40.0% | |
| TGGAGTGAGTTTAGAAGGTT+TGG | - | chr1.4:5276289-5276308 | MS.gene66485:CDS | 40.0% | |
| TGGTACAACAACAATGGATC+TGG | - | chr1.4:5276341-5276360 | MS.gene66485:intron | 40.0% | |
| TGTGAGGTGGAGTAGTAATA+TGG | - | chr1.4:5278109-5278128 | MS.gene66485:CDS | 40.0% | |
| TTTCATATGATGAGTCCTCG+AGG | - | chr1.4:5279385-5279404 | MS.gene66485:intron | 40.0% | |
| TTTCTGTGAAGGGTTCAGAA+GGG | + | chr1.4:5279442-5279461 | None:intergenic | 40.0% | |
| TTTGATTGATGCAGTGGGAT+GGG | - | chr1.4:5278283-5278302 | MS.gene66485:CDS | 40.0% | |
| ! | AAAGTGGAGGTTTTCTGTGA+AGG | + | chr1.4:5279453-5279472 | None:intergenic | 40.0% |
| ! | AAGTGGAGGTTTTCTGTGAA+GGG | + | chr1.4:5279452-5279471 | None:intergenic | 40.0% |
| ! | ATCCATTGAGAAGGTGTGAA+TGG | + | chr1.4:5277388-5277407 | None:intergenic | 40.0% |
| ! | ATCCGAATGCAGTCTTTTGA+AGG | + | chr1.4:5280046-5280065 | None:intergenic | 40.0% |
| ! | CTTGTTCCTCTAAGGAGTAA+AGG | + | chr1.4:5280183-5280202 | None:intergenic | 40.0% |
| ! | CTTTGGTTTCAACTCTAGAG+TGG | + | chr1.4:5279331-5279350 | None:intergenic | 40.0% |
| ! | GAATCAAGGGCTTTTCTGAT+AGG | + | chr1.4:5277484-5277503 | None:intergenic | 40.0% |
| ! | GTTTTGTGAAGATGAACCGA+AGG | + | chr1.4:5279490-5279509 | None:intergenic | 40.0% |
| ! | TCATCTATTGTTGTTCCTGG+TGG | - | chr1.4:5278590-5278609 | MS.gene66485:intron | 40.0% |
| ! | TGGTGATCTGAGTGAGTTTT+GGG | + | chr1.4:5279570-5279589 | None:intergenic | 40.0% |
| ! | TTTTCTGTGAAGGGTTCAGA+AGG | + | chr1.4:5279443-5279462 | None:intergenic | 40.0% |
| !! | CACTCTAGAGTTGAAACCAA+AGG | - | chr1.4:5279329-5279348 | MS.gene66485:intron | 40.0% |
| !! | CTAGTTTTCTGACCTGTTGA+TGG | + | chr1.4:5278714-5278733 | None:intergenic | 40.0% |
| !! | GATCTTCTAGGATCAACTCT+TGG | - | chr1.4:5280146-5280165 | MS.gene66485:CDS | 40.0% |
| !! | TATAGTTCTGGAAGCATGCA+TGG | - | chr1.4:5277358-5277377 | MS.gene66485:CDS | 40.0% |
| !! | TTGGTGATCTGAGTGAGTTT+TGG | + | chr1.4:5279571-5279590 | None:intergenic | 40.0% |
| !! | TTTTGATTGATGCAGTGGGA+TGG | - | chr1.4:5278282-5278301 | MS.gene66485:CDS | 40.0% |
| !!! | TCTTCCTGTTTTAGGGAGAT+GGG | - | chr1.4:5276945-5276964 | MS.gene66485:CDS | 40.0% |
| !!! | TTCTTCCTGTTTTAGGGAGA+TGG | - | chr1.4:5276944-5276963 | MS.gene66485:CDS | 40.0% |
| ACAGAAAACCTCCACTTTGC+TGG | - | chr1.4:5279455-5279474 | MS.gene66485:intron | 45.0% | |
| ACCTTCTCAATGGATGGAGT+TGG | - | chr1.4:5277393-5277412 | MS.gene66485:intron | 45.0% | |
| AGAAAAGCCCTTGATTCTGC+TGG | - | chr1.4:5277487-5277506 | MS.gene66485:intron | 45.0% | |
| AGATGAAGAACCTCTCCAAG+TGG | + | chr1.4:5279888-5279907 | None:intergenic | 45.0% | |
| ATACTCGAACAACACCGATC+CGG | - | chr1.4:5278322-5278341 | MS.gene66485:CDS | 45.0% | |
| ATGAAGTCCGAGGAAGTCAT+CGG | + | chr1.4:5279672-5279691 | None:intergenic | 45.0% | |
| ATGGATGGAGTTGGAACATC+AGG | - | chr1.4:5277402-5277421 | MS.gene66485:intron | 45.0% | |
| CAGAAAACCTCCACTTTGCT+GGG | - | chr1.4:5279456-5279475 | MS.gene66485:intron | 45.0% | |
| CCTCGAGGAACAATGAATTC+GGG | - | chr1.4:5279400-5279419 | MS.gene66485:intron | 45.0% | |
| CTTGGTGGAGTGAGTTTAGA+AGG | - | chr1.4:5276284-5276303 | MS.gene66485:CDS | 45.0% | |
| GACCATTCACACCTTCTCAA+TGG | - | chr1.4:5277383-5277402 | MS.gene66485:CDS | 45.0% | |
| GACCCTATTCAAATGGGGTT+AGG | - | chr1.4:5279759-5279778 | MS.gene66485:intron | 45.0% | |
| GCCCTAAATCTCATGACTGA+TGG | - | chr1.4:5279972-5279991 | MS.gene66485:intron | 45.0% | |
| GTGAAGATGAACCGAAGGTT+CGG | + | chr1.4:5279485-5279504 | None:intergenic | 45.0% | |
| TCACTTTCGAATAGTAGCGC+CGG | - | chr1.4:5280065-5280084 | MS.gene66485:CDS | 45.0% | |
| TCCAACTCCATCCATTGAGA+AGG | + | chr1.4:5277397-5277416 | None:intergenic | 45.0% | |
| TGAAGATGAACCGAAGGTTC+GGG | + | chr1.4:5279484-5279503 | None:intergenic | 45.0% | |
| TGAAGGGTTCAGAAGGGAAT+CGG | + | chr1.4:5279436-5279455 | None:intergenic | 45.0% | |
| TGTATTTGTGGTTCCACCAG+TGG | + | chr1.4:5278495-5278514 | None:intergenic | 45.0% | |
| TGTTGTTCGAGTATCCCAGA+TGG | + | chr1.4:5278316-5278335 | None:intergenic | 45.0% | |
| TTCAACACCGATGACTTCCT+CGG | - | chr1.4:5279662-5279681 | MS.gene66485:intron | 45.0% | |
| TTGATTGATGCAGTGGGATG+GGG | - | chr1.4:5278284-5278303 | MS.gene66485:CDS | 45.0% | |
| TTGCAAAAAGGGGCTAATGG+AGG | - | chr1.4:5277773-5277792 | MS.gene66485:intron | 45.0% | |
| ! | ACTGTTGGAGGGTCTTTTCA+TGG | - | chr1.4:5276809-5276828 | MS.gene66485:CDS | 45.0% |
| ! | GTGTGCAAAGCTAAGAGTGT+TGG | + | chr1.4:5278627-5278646 | None:intergenic | 45.0% |
| ! | TGCGAAAGGCATATGAACAG+AGG | - | chr1.4:5278419-5278438 | MS.gene66485:intron | 45.0% |
| !! | GAGTTTTTCATTGGTTGCGG+AGG | + | chr1.4:5279706-5279725 | None:intergenic | 45.0% |
| !! | TGCAGTCTTTTGAAGGACTC+CGG | + | chr1.4:5280039-5280058 | None:intergenic | 45.0% |
| !! | TTCTGACCTGTTGATGGTGT+TGG | + | chr1.4:5278708-5278727 | None:intergenic | 45.0% |
| AACCCTACAAACCGAGATGC+AGG | - | chr1.4:5279507-5279526 | MS.gene66485:intron | 50.0% | |
| ACTAGTGAGAGGATGCAGGA+TGG | - | chr1.4:5279282-5279301 | MS.gene66485:intron | 50.0% | |
| ACTTGGGAGAGTTCAATGGG+TGG | - | chr1.4:5279861-5279880 | MS.gene66485:intron | 50.0% | |
| AGCTCGACATGCAGTCTGAT+AGG | - | chr1.4:5279625-5279644 | MS.gene66485:intron | 50.0% | |
| AGTTCAATGGGTGGTCCACT+TGG | - | chr1.4:5279870-5279889 | MS.gene66485:intron | 50.0% | |
| ATTGCTGAGAGCCTGCATCT+CGG | + | chr1.4:5279521-5279540 | None:intergenic | 50.0% | |
| CAACACTAGTGAGAGGATGC+AGG | - | chr1.4:5279278-5279297 | MS.gene66485:CDS | 50.0% | |
| CAACATCATAACCGCTCAGG+TGG | - | chr1.4:5279588-5279607 | MS.gene66485:intron | 50.0% | |
| CACCAACATCATAACCGCTC+AGG | - | chr1.4:5279585-5279604 | MS.gene66485:intron | 50.0% | |
| CACCTGAGCGGTTATGATGT+TGG | + | chr1.4:5279590-5279609 | None:intergenic | 50.0% | |
| CCAATTGGATCATCGCCAAC+CGG | - | chr1.4:5280017-5280036 | MS.gene66485:intron | 50.0% | |
| CCACAGGCTTTCTTGAACGA+TGG | + | chr1.4:5278448-5278467 | None:intergenic | 50.0% | |
| CCATCGTTCAAGAAAGCCTG+TGG | - | chr1.4:5278445-5278464 | MS.gene66485:intron | 50.0% | |
| CCCGAATTCATTGTTCCTCG+AGG | + | chr1.4:5279403-5279422 | None:intergenic | 50.0% | |
| CGTTCAAGAAAGCCTGTGGA+AGG | - | chr1.4:5278449-5278468 | MS.gene66485:intron | 50.0% | |
| GCCAAGAAAAACCACCTGAG+CGG | + | chr1.4:5279602-5279621 | None:intergenic | 50.0% | |
| GTTGGCGATGATCCAATTGG+AGG | + | chr1.4:5280017-5280036 | None:intergenic | 50.0% | |
| TCTGTTCTCCTACACCTTCC+TGG | + | chr1.4:5278350-5278369 | None:intergenic | 50.0% | |
| TGTCTCTATGACGGCTGTTG+AGG | - | chr1.4:5278953-5278972 | MS.gene66485:intron | 50.0% | |
| TTCTGCCCTTGGACTACTAC+CGG | + | chr1.4:5280087-5280106 | None:intergenic | 50.0% | |
| TTGGAAACAGTGTTGCCACC+AGG | + | chr1.4:5278608-5278627 | None:intergenic | 50.0% | |
| ! | ACCGCTCAGGTGGTTTTTCT+TGG | - | chr1.4:5279598-5279617 | MS.gene66485:intron | 50.0% |
| ! | AGCCTGCATCTCGGTTTGTA+GGG | + | chr1.4:5279512-5279531 | None:intergenic | 50.0% |
| ! | CTCAGGTGGTTTTTCTTGGC+CGG | - | chr1.4:5279602-5279621 | MS.gene66485:intron | 50.0% |
| ! | GGAAGGTGTAGGAGAACAGA+TGG | - | chr1.4:5278350-5278369 | MS.gene66485:intron | 50.0% |
| !! | AGTTCTGGAAGCATGCATGG+AGG | - | chr1.4:5277361-5277380 | MS.gene66485:CDS | 50.0% |
| !! | GGTTTCAACTCTAGAGTGGG+TGG | + | chr1.4:5279327-5279346 | None:intergenic | 50.0% |
| !! | GTCTTTTGAAGGACTCCGGT+TGG | + | chr1.4:5280035-5280054 | None:intergenic | 50.0% |
| AACAACACCGATCCGGAACC+AGG | - | chr1.4:5278329-5278348 | MS.gene66485:CDS | 55.0% | |
| AAGCCTGTGGAAGGCCAATC+TGG | - | chr1.4:5278458-5278477 | MS.gene66485:intron | 55.0% | |
| AATGGGTGGTCCACTTGGAG+AGG | - | chr1.4:5279875-5279894 | MS.gene66485:intron | 55.0% | |
| ACACCTTCCTGGTTCCGGAT+CGG | + | chr1.4:5278339-5278358 | None:intergenic | 55.0% | |
| ACGGCTCAGATCATAGTCGC+GGG | + | chr1.4:5278917-5278936 | None:intergenic | 55.0% | |
| ATTGATGCAGTGGGATGGGG+AGG | - | chr1.4:5278287-5278306 | MS.gene66485:CDS | 55.0% | |
| CACGGCTCAGATCATAGTCG+CGG | + | chr1.4:5278918-5278937 | None:intergenic | 55.0% | |
| CAGGCTCTCAGCAATCCCTT+AGG | - | chr1.4:5279526-5279545 | MS.gene66485:intron | 55.0% | |
| CCGGTTGGCGATGATCCAAT+TGG | + | chr1.4:5280020-5280039 | None:intergenic | 55.0% | |
| CGTGAACGACATGAAGTCCG+AGG | + | chr1.4:5279682-5279701 | None:intergenic | 55.0% | |
| CTCCTACACCTTCCTGGTTC+CGG | + | chr1.4:5278344-5278363 | None:intergenic | 55.0% | |
| CTGCTGCCAACACCATCAAC+AGG | - | chr1.4:5278699-5278718 | MS.gene66485:intron | 55.0% | |
| GGATGGGGAGGATTCCATCT+GGG | - | chr1.4:5278299-5278318 | MS.gene66485:CDS | 55.0% | |
| TCAGACTGCATGTCGAGCTC+CGG | + | chr1.4:5279624-5279643 | None:intergenic | 55.0% | |
| TTGCTGGGAACCCGAACCTT+CGG | - | chr1.4:5279471-5279490 | MS.gene66485:intron | 55.0% | |
| ! | ATCCGGAACCAGGAAGGTGT+AGG | - | chr1.4:5278339-5278358 | MS.gene66485:intron | 55.0% |
| ! | GAGCCTGCATCTCGGTTTGT+AGG | + | chr1.4:5279513-5279532 | None:intergenic | 55.0% |
| ! | TCTAGAGTGGGTGGCAGCAT+TGG | + | chr1.4:5279318-5279337 | None:intergenic | 55.0% |
| !! | TAGCGCCGGTAGTAGTCCAA+GGG | - | chr1.4:5280079-5280098 | MS.gene66485:CDS | 55.0% |
| ACACCGATCCGGAACCAGGA+AGG | - | chr1.4:5278333-5278352 | MS.gene66485:CDS | 60.0% | |
| CGCGACTATGATCTGAGCCG+TGG | - | chr1.4:5278916-5278935 | MS.gene66485:intron | 60.0% | |
| GGGATGGGGAGGATTCCATC+TGG | - | chr1.4:5278298-5278317 | MS.gene66485:CDS | 60.0% | |
| TCGGGTTCCCAGCAAAGTGG+AGG | + | chr1.4:5279466-5279485 | None:intergenic | 60.0% | |
| TGGTGAGAGCCTGGCCAGAT+TGG | + | chr1.4:5278475-5278494 | None:intergenic | 60.0% | |
| TGTGGAAGGCCAATCTGGCC+AGG | - | chr1.4:5278463-5278482 | MS.gene66485:intron | 60.0% | |
| TTCCACCAGTGGTGAGAGCC+TGG | + | chr1.4:5278484-5278503 | None:intergenic | 60.0% | |
| ! | GGTTCGGGTTCCCAGCAAAG+TGG | + | chr1.4:5279469-5279488 | None:intergenic | 60.0% |
| !! | GGTGGCAGCATTGGTAGTGC+AGG | + | chr1.4:5279309-5279328 | None:intergenic | 60.0% |
| !! | GTAGCGCCGGTAGTAGTCCA+AGG | - | chr1.4:5280078-5280097 | MS.gene66485:CDS | 60.0% |
| !! | TGGCCAGATTGGCCTTCCAC+AGG | + | chr1.4:5278464-5278483 | None:intergenic | 60.0% |
| TCTGGCCAGGCTCTCACCAC+TGG | - | chr1.4:5278476-5278495 | MS.gene66485:intron | 65.0% | |
| GGCCAGGCTCTCACCACTGG+TGG | - | chr1.4:5278479-5278498 | MS.gene66485:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 5276278 | 5280376 | 5276278 | ID=MS.gene66485 |
| chr1.4 | mRNA | 5276278 | 5280376 | 5276278 | ID=MS.gene66485.t1;Parent=MS.gene66485 |
| chr1.4 | exon | 5280019 | 5280376 | 5280019 | ID=MS.gene66485.t1.exon1;Parent=MS.gene66485.t1 |
| chr1.4 | CDS | 5280019 | 5280376 | 5280019 | ID=cds.MS.gene66485.t1;Parent=MS.gene66485.t1 |
| chr1.4 | exon | 5279104 | 5279298 | 5279104 | ID=MS.gene66485.t1.exon2;Parent=MS.gene66485.t1 |
| chr1.4 | CDS | 5279104 | 5279298 | 5279104 | ID=cds.MS.gene66485.t1;Parent=MS.gene66485.t1 |
| chr1.4 | exon | 5277934 | 5278357 | 5277934 | ID=MS.gene66485.t1.exon3;Parent=MS.gene66485.t1 |
| chr1.4 | CDS | 5277934 | 5278357 | 5277934 | ID=cds.MS.gene66485.t1;Parent=MS.gene66485.t1 |
| chr1.4 | exon | 5276487 | 5277403 | 5276487 | ID=MS.gene66485.t1.exon4;Parent=MS.gene66485.t1 |
| chr1.4 | CDS | 5276487 | 5277403 | 5276487 | ID=cds.MS.gene66485.t1;Parent=MS.gene66485.t1 |
| chr1.4 | exon | 5276278 | 5276315 | 5276278 | ID=MS.gene66485.t1.exon5;Parent=MS.gene66485.t1 |
| chr1.4 | CDS | 5276278 | 5276315 | 5276278 | ID=cds.MS.gene66485.t1;Parent=MS.gene66485.t1 |
| Gene Sequence |
| Protein sequence |
