AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene051667

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051667.t1 MTR_1g017490 95.712 653 14 4 1 639 1 653 0.0 1260
MS.gene051667.t1 MTR_1g017490 96.731 520 11 1 126 639 1 520 0.0 1032
MS.gene051667.t1 MTR_2g041430 58.407 113 47 0 130 242 7 119 1.10e-40 152
MS.gene051667.t1 MTR_2g041430 58.407 113 47 0 130 242 7 119 1.29e-40 152
MS.gene051667.t1 MTR_2g041430 58.407 113 47 0 130 242 7 119 1.36e-40 152
MS.gene051667.t1 MTR_4g125490 54.478 134 50 3 130 262 9 132 5.15e-40 152
MS.gene051667.t1 MTR_8g020560 55.357 112 46 1 131 242 12 119 1.25e-39 149
MS.gene051667.t1 MTR_0001s0490 51.825 137 49 3 130 266 25 144 9.02e-37 140
MS.gene051667.t1 MTR_5g027030 58.407 113 31 2 130 242 16 112 2.38e-36 139
MS.gene051667.t1 MTR_7g104050 55.556 117 44 3 128 242 76 186 1.51e-32 130
MS.gene051667.t1 MTR_7g104050 55.652 115 47 2 128 242 76 186 1.54e-32 129
MS.gene051667.t1 MTR_3g092330 54.783 115 26 3 130 242 113 203 4.73e-32 131
MS.gene051667.t1 MTR_8g035910 44.248 113 43 4 131 242 50 143 2.87e-20 94.4
MS.gene051667.t1 MTR_8g035910 35.878 131 77 4 145 271 243 370 1.71e-11 67.0
MS.gene051667.t1 MTR_8g035640 50.000 58 25 1 183 236 32 89 2.30e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051667.t1 AT2G22840 39.073 604 198 21 27 597 22 488 3.95e-91 292
MS.gene051667.t1 AT4G37740 38.315 629 211 27 32 614 28 525 8.46e-85 276
MS.gene051667.t1 AT3G13960 58.407 113 43 1 130 242 16 124 3.61e-41 154
MS.gene051667.t1 AT2G36400 57.391 115 48 1 128 242 74 187 6.09e-34 134
MS.gene051667.t1 AT2G06200 45.342 161 75 4 130 278 45 204 1.94e-32 127
MS.gene051667.t1 AT2G06200 45.342 161 75 4 130 278 6 165 2.08e-32 125
MS.gene051667.t1 AT3G52910 51.240 121 47 2 128 242 80 194 3.03e-31 126
MS.gene051667.t1 AT4G24150 48.696 115 59 0 128 242 109 223 5.01e-26 111
MS.gene051667.t1 AT4G24150 48.696 115 59 0 128 242 147 261 9.90e-26 111
MS.gene051667.t1 AT5G53660 43.939 132 53 2 124 255 53 163 7.83e-24 103
MS.gene051667.t1 AT4G24150 45.714 140 51 5 128 242 147 286 1.78e-23 104
MS.gene051667.t1 AT2G45480 49.074 108 47 3 134 239 28 129 2.11e-22 98.6
MS.gene051667.t1 AT2G45480 49.074 108 47 3 134 239 28 129 1.39e-21 98.2
MS.gene051667.t1 AT2G45480 46.479 71 36 2 198 268 306 374 4.62e-13 72.0
MS.gene051667.t1 AT2G45480 49.074 108 47 3 134 239 26 127 1.42e-21 98.2
MS.gene051667.t1 AT2G45480 46.479 71 36 2 198 268 304 372 4.75e-13 72.0
MS.gene051667.t1 AT2G06200 46.237 93 44 2 192 278 1 93 1.67e-16 78.2

Find 149 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGAACTCTCCCAAGTTAT+TGG 0.152774 1.3:+5112458 None:intergenic
AAGAATATGAACAACCTTAT+TGG 0.157641 1.3:-5113653 MS.gene051667:CDS
CATAAGACAATGCAGCATTT+TGG 0.211480 1.3:+5115747 None:intergenic
AATAAGGTTGTTCATATTCT+TGG 0.221832 1.3:+5113655 None:intergenic
AACCATCAGTCATGAGATTT+AGG 0.225448 1.3:+5112339 None:intergenic
GTGATCATCATTTGCATTGT+AGG 0.266573 1.3:+5112391 None:intergenic
CTTGGTGGAGTGAGTTTAGA+AGG 0.269348 1.3:-5116034 MS.gene051667:CDS
TCTTCATCTATTGTTGTTCC+TGG 0.272838 1.3:-5113725 MS.gene051667:CDS
TCTGTTCTCCTACACCTTCC+TGG 0.276185 1.3:+5113965 None:intergenic
ATACTACAAAGCAAGCTAAT+TGG 0.301022 1.3:-5112484 MS.gene051667:CDS
CTCCTACACCTTCCTGGTTC+CGG 0.301178 1.3:+5113971 None:intergenic
ACAGAAAACCTCCACTTTGC+TGG 0.307229 1.3:-5112858 MS.gene051667:CDS
AAGCATTATCTTGTCCAATA+AGG 0.312606 1.3:+5113639 None:intergenic
GAGCCTGCATCTCGGTTTGT+AGG 0.333439 1.3:+5112803 None:intergenic
ATACTTCCTTTACTCCTTAG+TGG 0.341502 1.3:-5112139 None:intergenic
GTTTGAACAGGTTATAGTTC+TGG 0.342225 1.3:-5114968 MS.gene051667:intron
AGTTTGTGCAATGATCTTCT+AGG 0.349835 1.3:-5112179 MS.gene051667:CDS
TGGAGTGAGTTTAGAAGGTT+TGG 0.355173 1.3:-5116029 MS.gene051667:CDS
TCCTCGAGGAACAATGAATT+CGG 0.355251 1.3:-5112914 MS.gene051667:CDS
TCATATTCTTGGAATGTTCC+TGG 0.358480 1.3:+5113666 None:intergenic
ACACCTAACCCCATTTGAAT+AGG 0.359219 1.3:+5112551 None:intergenic
AACTCACACTTTCACCTCTT+AGG 0.372743 1.3:-5112592 MS.gene051667:CDS
CGCTCTTAGCTTTGCACACC+AGG 0.373444 1.3:-5113684 MS.gene051667:CDS
CTAATTGGATTCCAATAACT+TGG 0.378217 1.3:-5112469 MS.gene051667:CDS
TTGATTGATGCAGTGGGATG+GGG 0.381772 1.3:-5114028 MS.gene051667:intron
TTGGTGATCTGAGTGAGTTT+TGG 0.385367 1.3:+5112745 None:intergenic
GTGAAGATGAACCGAAGGTT+CGG 0.390750 1.3:+5112831 None:intergenic
TTCCACCAGTGGTGAGAGCC+TGG 0.403872 1.3:+5113831 None:intergenic
CCACAGGCTTTCTTGAACGA+TGG 0.404313 1.3:+5113867 None:intergenic
GAAATAGACCCTATTCAAAT+GGG 0.406443 1.3:-5112560 MS.gene051667:CDS
AGAAATAGACCCTATTCAAA+TGG 0.409611 1.3:-5112561 MS.gene051667:CDS
AAGCCTGTGGAAGGCCAATC+TGG 0.411103 1.3:-5113854 MS.gene051667:CDS
ACCATCAGTCATGAGATTTA+GGG 0.418748 1.3:+5112340 None:intergenic
TGGCCAGATTGGCCTTCCAC+AGG 0.420452 1.3:+5113851 None:intergenic
TCTGGCCAGGCTCTCACCAC+TGG 0.421683 1.3:-5113836 MS.gene051667:CDS
TGAAGATGAACCGAAGGTTC+GGG 0.426118 1.3:+5112832 None:intergenic
TTTGATTGATGCAGTGGGAT+GGG 0.426520 1.3:-5114029 MS.gene051667:intron
AACAACACCGATCCGGAACC+AGG 0.428029 1.3:-5113983 MS.gene051667:CDS
TTGCTGGGAACCCGAACCTT+CGG 0.432840 1.3:-5112842 MS.gene051667:CDS
AATAACTTGGGAGAGTTCAA+TGG 0.434636 1.3:-5112456 MS.gene051667:CDS
TAACTGCACATACATGCATT+TGG 0.440306 1.3:+5114773 None:intergenic
CACCTAACCCCATTTGAATA+GGG 0.440538 1.3:+5112552 None:intergenic
CCTCGAGGAACAATGAATTC+GGG 0.441663 1.3:-5112913 MS.gene051667:CDS
AGTAGTAGCAGCTGTATTTG+TGG 0.442455 1.3:+5113808 None:intergenic
TGGTGAGAGCCTGGCCAGAT+TGG 0.445236 1.3:+5113840 None:intergenic
AAATCTCATGACTGATGGTT+GGG 0.448530 1.3:-5112336 MS.gene051667:CDS
ATGGATGGAGTTGGAACATC+AGG 0.449683 1.3:-5114912 MS.gene051667:CDS
TGTGGAAGGCCAATCTGGCC+AGG 0.452012 1.3:-5113849 MS.gene051667:CDS
AATGCAAATGATGATCACTA+TGG 0.452218 1.3:-5112386 MS.gene051667:CDS
TTACTTAAACAAGAGAGATC+TGG 0.453042 1.3:-5115953 MS.gene051667:CDS
TTCTGCCCTTGGACTACTAC+CGG 0.453252 1.3:+5112229 None:intergenic
GTCCTTCAAAAGACTGCATT+CGG 0.456928 1.3:-5112272 MS.gene051667:CDS
AGAAAAGCCCTTGATTCTGC+TGG 0.462621 1.3:-5114827 MS.gene051667:CDS
CTGCTGCCAACACCATCAAC+AGG 0.462743 1.3:-5113613 MS.gene051667:intron
CAGAAAACCTCCACTTTGCT+GGG 0.465527 1.3:-5112857 MS.gene051667:CDS
TTCTGACCTGTTGATGGTGT+TGG 0.470559 1.3:+5113607 None:intergenic
ATTTCTCTTGATAGCCTAAG+AGG 0.472531 1.3:+5112578 None:intergenic
CCGGTTGGCGATGATCCAAT+TGG 0.472751 1.3:+5112296 None:intergenic
TCTAGAGTGGGTGGCAGCAT+TGG 0.473483 1.3:+5112998 None:intergenic
TCTAGTTACAACAGAAATAC+AGG 0.475853 1.3:-5115704 MS.gene051667:intron
TGGTACAACAACAATGGATC+TGG 0.476248 1.3:-5115977 MS.gene051667:CDS
AGCCTGCATCTCGGTTTGTA+GGG 0.477728 1.3:+5112804 None:intergenic
GGGATGGGGAGGATTCCATC+TGG 0.478367 1.3:-5114014 MS.gene051667:CDS
CTTTGGTTTCAACTCTAGAG+TGG 0.478958 1.3:+5112985 None:intergenic
TGTTTCTAAATGGATCTTGG+TGG 0.483588 1.3:-5116049 None:intergenic
TAGATAAGCCAGCAGAATCA+AGG 0.485816 1.3:+5114819 None:intergenic
ATTCAAATGGGGTTAGGTGT+TGG 0.489350 1.3:-5112548 MS.gene051667:CDS
AGTTCAATGGGTGGTCCACT+TGG 0.489957 1.3:-5112443 MS.gene051667:CDS
CTTGTTCCACTAAGGAGTAA+AGG 0.497238 1.3:+5112133 None:intergenic
AATCACAATAGTCCTCCAAT+TGG 0.497889 1.3:-5112311 MS.gene051667:CDS
CCAATTGGATCATCGCCAAC+CGG 0.498011 1.3:-5112296 MS.gene051667:CDS
AGCTCGACATGCAGTCTGAT+AGG 0.498577 1.3:-5112688 MS.gene051667:CDS
GACCATTCACACCTTCTCAA+TGG 0.498886 1.3:-5114931 MS.gene051667:CDS
GGTGGCAGCATTGGTAGTGC+AGG 0.500285 1.3:+5113007 None:intergenic
GACCCTATTCAAATGGGGTT+AGG 0.500567 1.3:-5112554 MS.gene051667:CDS
TTCAACACCGATGACTTCCT+CGG 0.501884 1.3:-5112651 MS.gene051667:CDS
AACCCTACAAACCGAGATGC+AGG 0.503273 1.3:-5112806 MS.gene051667:CDS
TGATGAACCACTTGGAGTAA+TGG 0.508265 1.3:+5113778 None:intergenic
TTTGGTTTCAACTCTAGAGT+GGG 0.508283 1.3:+5112986 None:intergenic
TGAAGGGTTCAGAAGGGAAT+CGG 0.508397 1.3:+5112880 None:intergenic
AACAATAAAACAACTCAAGA+AGG 0.516329 1.3:-5112206 MS.gene051667:CDS
CAGGCTCTCAGCAATCCCTT+AGG 0.516400 1.3:-5112787 MS.gene051667:CDS
ATTGATGCAGTGGGATGGGG+AGG 0.517801 1.3:-5114025 MS.gene051667:intron
ATACTCGAACAACACCGATC+CGG 0.522042 1.3:-5113990 MS.gene051667:CDS
AGTCGTCGATAAAATGCCTA+AGG 0.528289 1.3:+5112771 None:intergenic
ATCCATTGAGAAGGTGTGAA+TGG 0.529637 1.3:+5114929 None:intergenic
ATCTGCTTTGATGAACCACT+TGG 0.531326 1.3:+5113770 None:intergenic
ATAACTTGGGAGAGTTCAAT+GGG 0.532863 1.3:-5112455 MS.gene051667:CDS
TTTCTGTTGTAACTAGACAT+AGG 0.533184 1.3:+5115710 None:intergenic
TATAGTTCTGGAAGCATGCA+TGG 0.536987 1.3:-5114956 MS.gene051667:CDS
TAAATCTCATGACTGATGGT+TGG 0.537129 1.3:-5112337 MS.gene051667:CDS
GGAGAACAGATGGAAAGAAA+TGG 0.537455 1.3:-5113952 MS.gene051667:CDS
ACACCTTCCTGGTTCCGGAT+CGG 0.539895 1.3:+5113976 None:intergenic
TCATCTATTGTTGTTCCTGG+TGG 0.540775 1.3:-5113722 MS.gene051667:CDS
AATGGGTGGTCCACTTGGAG+AGG 0.548361 1.3:-5112438 MS.gene051667:CDS
CACCAACATCATAACCGCTC+AGG 0.548639 1.3:-5112728 MS.gene051667:CDS
ATTCACACCTTCTCAATGGA+TGG 0.550208 1.3:-5114927 MS.gene051667:CDS
TGTTGTAACTAGACATAGGA+TGG 0.561408 1.3:+5115714 None:intergenic
ACCTTCTCAATGGATGGAGT+TGG 0.562452 1.3:-5114921 MS.gene051667:CDS
TCAGACTGCATGTCGAGCTC+CGG 0.562970 1.3:+5112692 None:intergenic
AGATAAGCCAGCAGAATCAA+GGG 0.564902 1.3:+5114820 None:intergenic
GGAACAACAATAGATGAAGA+AGG 0.565252 1.3:+5113728 None:intergenic
GATCTTCTAGGATCAACTCT+TGG 0.567836 1.3:-5112167 MS.gene051667:CDS
ATGAAGTCCGAGGAAGTCAT+CGG 0.569735 1.3:+5112644 None:intergenic
GCCCTAAATCTCATGACTGA+TGG 0.570545 1.3:-5112341 MS.gene051667:CDS
GGCCAGGCTCTCACCACTGG+TGG 0.570680 1.3:-5113833 MS.gene051667:CDS
GGTTTCAACTCTAGAGTGGG+TGG 0.570696 1.3:+5112989 None:intergenic
TGTATTTGTGGTTCCACCAG+TGG 0.570943 1.3:+5113820 None:intergenic
GGAAGGTGTAGGAGAACAGA+TGG 0.576607 1.3:-5113962 MS.gene051667:CDS
CAACACTAGTGAGAGGATGC+AGG 0.577864 1.3:-5113035 MS.gene051667:CDS
AATAAATGGTACAACAACAA+TGG 0.583357 1.3:-5115983 MS.gene051667:CDS
CGTTCAAGAAAGCCTGTGGA+AGG 0.583949 1.3:-5113863 MS.gene051667:CDS
GGATGGGGAGGATTCCATCT+GGG 0.587603 1.3:-5114013 MS.gene051667:CDS
GTGTGCAAAGCTAAGAGCGT+TGG 0.589886 1.3:+5113688 None:intergenic
ACTTCAACCATTACTCCAAG+TGG 0.590678 1.3:-5113785 MS.gene051667:CDS
AATGATGATCACTATGGCAG+AGG 0.596008 1.3:-5112380 MS.gene051667:CDS
TAATTGGATTCCAATAACTT+GGG 0.596671 1.3:-5112468 MS.gene051667:CDS
GTTGGCGATGATCCAATTGG+AGG 0.597813 1.3:+5112299 None:intergenic
TCGGGTTCCCAGCAAAGTGG+AGG 0.601917 1.3:+5112850 None:intergenic
ACATACATGCATTTGGTCTG+AGG 0.603882 1.3:+5114780 None:intergenic
TTGGAAACAGTGTTGCCACC+AGG 0.605229 1.3:+5113707 None:intergenic
TTGATCAAAAGTACTGCGAA+AGG 0.605510 1.3:-5113907 MS.gene051667:CDS
TAGCGCCGGTAGTAGTCCAA+GGG 0.611402 1.3:-5112234 MS.gene051667:CDS
GTAGCGCCGGTAGTAGTCCA+AGG 0.615873 1.3:-5112235 MS.gene051667:CDS
CACCTGAGCGGTTATGATGT+TGG 0.615910 1.3:+5112726 None:intergenic
ATTGCTGAGAGCCTGCATCT+CGG 0.615994 1.3:+5112795 None:intergenic
TCCAACTCCATCCATTGAGA+AGG 0.621452 1.3:+5114920 None:intergenic
CACTCTAGAGTTGAAACCAA+AGG 0.624902 1.3:-5112984 MS.gene051667:CDS
CAACATCATAACCGCTCAGG+TGG 0.625010 1.3:-5112725 MS.gene051667:CDS
GTCGTCGATAAAATGCCTAA+GGG 0.628833 1.3:+5112772 None:intergenic
TCACTTTCGAATAGTAGCGC+CGG 0.636444 1.3:-5112248 MS.gene051667:CDS
CCATCGTTCAAGAAAGCCTG+TGG 0.641306 1.3:-5113867 MS.gene051667:CDS
GGTTCGGGTTCCCAGCAAAG+TGG 0.643195 1.3:+5112847 None:intergenic
TTTCTGTGAAGGGTTCAGAA+GGG 0.643231 1.3:+5112874 None:intergenic
CCCGAATTCATTGTTCCTCG+AGG 0.649213 1.3:+5112913 None:intergenic
AGATGAAGAACCTCTCCAAG+TGG 0.649574 1.3:+5112428 None:intergenic
ATCCGGAACCAGGAAGGTGT+AGG 0.650872 1.3:-5113973 MS.gene051667:CDS
ATAGGTAAAAGCAAATGATG+AGG 0.652672 1.3:+5114851 None:intergenic
AGAATAACAACACTAGTGAG+AGG 0.653602 1.3:-5113042 MS.gene051667:CDS
ACACCGATCCGGAACCAGGA+AGG 0.656785 1.3:-5113979 MS.gene051667:CDS
TGTTGTTCGAGTATCCCAGA+TGG 0.657354 1.3:+5113999 None:intergenic
ATCAGTCATGAGATTTAGGG+CGG 0.658516 1.3:+5112343 None:intergenic
ACTAGTGAGAGGATGCAGGA+TGG 0.682389 1.3:-5113031 MS.gene051667:CDS
AAATAGACCCTATTCAAATG+GGG 0.682714 1.3:-5112559 MS.gene051667:CDS
CGTGAACGACATGAAGTCCG+AGG 0.693679 1.3:+5112634 None:intergenic
ACTTGGGAGAGTTCAATGGG+TGG 0.696784 1.3:-5112452 MS.gene051667:CDS
TGCGAAAGGCATATGAACAG+AGG 0.714010 1.3:-5113893 MS.gene051667:CDS
TTTCATATGATGAGTCCTCG+AGG 0.724605 1.3:-5112928 MS.gene051667:CDS
AGTTCTGGAAGCATGCATGG+AGG 0.751541 1.3:-5114953 MS.gene051667:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAAAAAATTTATATATTT+TGG - chr1.3:5112549-5112568 MS.gene051667:CDS 0.0%
!!! AAATTTATATATTTTGGATT+TGG - chr1.3:5112555-5112574 MS.gene051667:CDS 10.0%
!!! TTTTTATTTATTTTCATGTA+AGG + chr1.3:5112988-5113007 None:intergenic 10.0%
!! TATCTTTGTTAGTATTAATT+AGG + chr1.3:5113451-5113470 None:intergenic 15.0%
!! TATGTATTTATGAATCTATA+TGG - chr1.3:5112587-5112606 MS.gene051667:CDS 15.0%
!! TTGCATTATATTAGAAAATA+AGG - chr1.3:5113819-5113838 MS.gene051667:CDS 15.0%
!!! AGTTATTTTTAACAAAATCA+AGG + chr1.3:5114637-5114656 None:intergenic 15.0%
!!! ATTTTCTAATATAATGCAAA+GGG + chr1.3:5113818-5113837 None:intergenic 15.0%
!!! TATTTTCTAATATAATGCAA+AGG + chr1.3:5113819-5113838 None:intergenic 15.0%
!!! TATTTTTTTTCCAATCATTT+TGG - chr1.3:5113562-5113581 MS.gene051667:intron 15.0%
!!! TTGTAATTTTGGTTAATTTA+AGG - chr1.3:5113752-5113771 MS.gene051667:CDS 15.0%
!! ATAAGGTTGTTATAGTTATA+AGG - chr1.3:5112636-5112655 MS.gene051667:CDS 20.0%
!! ATTTATGAGCTATAATATGT+AGG - chr1.3:5112880-5112899 MS.gene051667:CDS 20.0%
!! CTAACAAAGATAAACATTAT+TGG - chr1.3:5113459-5113478 MS.gene051667:intron 20.0%
!! TATAGTACTAATCAATATGT+AGG - chr1.3:5114678-5114697 MS.gene051667:intron 20.0%
!! TATATTCCGTTATTCATTTA+GGG - chr1.3:5114913-5114932 MS.gene051667:CDS 20.0%
!! TTATATTCCGTTATTCATTT+AGG - chr1.3:5114912-5114931 MS.gene051667:CDS 20.0%
!!! AAAAGCTACAAAATTTTGAT+TGG - chr1.3:5112907-5112926 MS.gene051667:CDS 20.0%
!!! AAGGATGTTTTTTGTAATTT+TGG - chr1.3:5113741-5113760 MS.gene051667:CDS 20.0%
!!! ATGGAAATATATTTTTTGAG+TGG - chr1.3:5112692-5112711 MS.gene051667:CDS 20.0%
!!! TACATATTGATTAGTACTAT+AGG + chr1.3:5114679-5114698 None:intergenic 20.0%
!!! TGAATCAACTTTTTTTGTTT+TGG - chr1.3:5113126-5113145 MS.gene051667:intron 20.0%
!!! TTATTTATTTTCATGTAAGG+AGG + chr1.3:5112985-5113004 None:intergenic 20.0%
!!! TTTGTTACTTTTGTGTATAA+GGG - chr1.3:5115032-5115051 MS.gene051667:intron 20.0%
!!! TTTTGTTACTTTTGTGTATA+AGG - chr1.3:5115031-5115050 MS.gene051667:intron 20.0%
! AACAATAAAACAACTCAAGA+AGG - chr1.3:5115976-5115995 MS.gene051667:CDS 25.0%
! AAGAATATGAACAACCTTAT+TGG - chr1.3:5114529-5114548 MS.gene051667:intron 25.0%
! AATAAATGGTACAACAACAA+TGG - chr1.3:5112199-5112218 MS.gene051667:CDS 25.0%
! AATAAGGTTGTTCATATTCT+TGG + chr1.3:5114530-5114549 None:intergenic 25.0%
! AATCTATATGGTATCCATTT+GGG - chr1.3:5112599-5112618 MS.gene051667:CDS 25.0%
! AATCTCACACATTCAATTTA+AGG + chr1.3:5113589-5113608 None:intergenic 25.0%
! AATGTACCAAAATTGCAAAA+AGG - chr1.3:5113625-5113644 MS.gene051667:CDS 25.0%
! AATTTAAGGACCAAAATGAT+TGG + chr1.3:5113575-5113594 None:intergenic 25.0%
! ATCCTGAGTCAAAAAATAAA+TGG - chr1.3:5112185-5112204 MS.gene051667:CDS 25.0%
! ATGTACCAAAATTGCAAAAA+GGG - chr1.3:5113626-5113645 MS.gene051667:CDS 25.0%
! ATTAATTAGGCAAGGAAAAA+GGG + chr1.3:5113438-5113457 None:intergenic 25.0%
! CTTCAAACACAAATTTGATT+CGG + chr1.3:5113845-5113864 None:intergenic 25.0%
! GAATCAAATTTGTGTTTGAA+GGG - chr1.3:5113844-5113863 MS.gene051667:CDS 25.0%
! TAATTGGATTCCAATAACTT+GGG - chr1.3:5115714-5115733 MS.gene051667:CDS 25.0%
! TAGAGAATCACAATCAATTA+CGG + chr1.3:5114858-5114877 None:intergenic 25.0%
! TAGTTGAAAACTAACAATCA+AGG + chr1.3:5114066-5114085 None:intergenic 25.0%
! TATTAATTAGGCAAGGAAAA+AGG + chr1.3:5113439-5113458 None:intergenic 25.0%
! TGAAAAAACAAATTGATCGT+TGG - chr1.3:5113949-5113968 MS.gene051667:CDS 25.0%
! TTAAGTCATGTCAAGAAAAA+AGG - chr1.3:5112725-5112744 MS.gene051667:CDS 25.0%
! TTGTTAGTATTAATTAGGCA+AGG + chr1.3:5113446-5113465 None:intergenic 25.0%
!! TGTATTTTATGTCTCTATGA+CGG - chr1.3:5114814-5114833 MS.gene051667:CDS 25.0%
!!! AAAGATTCAGATTTTGAAGT+AGG + chr1.3:5112397-5112416 None:intergenic 25.0%
!!! ACAGATTTTTTACAGAAAGA+TGG + chr1.3:5112945-5112964 None:intergenic 25.0%
!!! ATGAAAGATTGATTTTCCTT+TGG + chr1.3:5115217-5115236 None:intergenic 25.0%
!!! CAGGTACAACATTTTTTTTT+AGG - chr1.3:5112497-5112516 MS.gene051667:CDS 25.0%
!!! TACCATTTATTTTTTGACTC+AGG + chr1.3:5112190-5112209 None:intergenic 25.0%
!!! TTGCAATTTTGGTACATTTA+GGG + chr1.3:5113623-5113642 None:intergenic 25.0%
!!! TTTGCAATTTTGGTACATTT+AGG + chr1.3:5113624-5113643 None:intergenic 25.0%
!!! TTTTTTTGTTTCTTGTTTGC+AGG - chr1.3:5115098-5115117 MS.gene051667:intron 25.0%
AAATAGACCCTATTCAAATG+GGG - chr1.3:5115623-5115642 MS.gene051667:intron 30.0%
AAGCATTATCTTGTCCAATA+AGG + chr1.3:5114546-5114565 None:intergenic 30.0%
AATGCAAATGATGATCACTA+TGG - chr1.3:5115796-5115815 MS.gene051667:CDS 30.0%
ACAGTATTCAACAAACATCA+AGG + chr1.3:5113196-5113215 None:intergenic 30.0%
ACATAAAATACATGATGCCA+CGG + chr1.3:5114806-5114825 None:intergenic 30.0%
AGAAATAGACCCTATTCAAA+TGG - chr1.3:5115621-5115640 MS.gene051667:intron 30.0%
ATACTACAAAGCAAGCTAAT+TGG - chr1.3:5115698-5115717 MS.gene051667:intron 30.0%
ATAGGTAAAAGCAAATGATG+AGG + chr1.3:5113334-5113353 None:intergenic 30.0%
ATCTATATGGTATCCATTTG+GGG - chr1.3:5112600-5112619 MS.gene051667:CDS 30.0%
CATCAAGGTAAAGTCAAAAA+AGG + chr1.3:5113181-5113200 None:intergenic 30.0%
CGAATCAAATTTGTGTTTGA+AGG - chr1.3:5113843-5113862 MS.gene051667:CDS 30.0%
CTAATTGGATTCCAATAACT+TGG - chr1.3:5115713-5115732 MS.gene051667:CDS 30.0%
GAAATAGACCCTATTCAAAT+GGG - chr1.3:5115622-5115641 MS.gene051667:intron 30.0%
GAATCATTCAAAAGTCAATG+TGG - chr1.3:5113899-5113918 MS.gene051667:CDS 30.0%
GAATCTATATGGTATCCATT+TGG - chr1.3:5112598-5112617 MS.gene051667:CDS 30.0%
GGGGAGCTAAAAAATTTATA+AGG - chr1.3:5112619-5112638 MS.gene051667:CDS 30.0%
GTTGTAAATCAGTTTAGTCT+TGG + chr1.3:5113703-5113722 None:intergenic 30.0%
TATTGCAAGAAATGTACCAA+CGG - chr1.3:5114957-5114976 MS.gene051667:CDS 30.0%
TCTAGTTACAACAGAAATAC+AGG - chr1.3:5112478-5112497 MS.gene051667:CDS 30.0%
TGTACCAAAATTGCAAAAAG+GGG - chr1.3:5113627-5113646 MS.gene051667:CDS 30.0%
TGTAGTCCCTAAATGAATAA+CGG + chr1.3:5114922-5114941 None:intergenic 30.0%
TGTCAAGAAAAAAGGAACAT+AGG - chr1.3:5112733-5112752 MS.gene051667:CDS 30.0%
TGTGTATAAGGGATAAATTC+AGG - chr1.3:5115043-5115062 MS.gene051667:intron 30.0%
TGTTTCTTATAGTTTAGTGC+AGG + chr1.3:5113676-5113695 None:intergenic 30.0%
TTACTTAAACAAGAGAGATC+TGG - chr1.3:5112229-5112248 MS.gene051667:CDS 30.0%
TTGTTGAATACTGTTTGAAC+AGG - chr1.3:5113202-5113221 MS.gene051667:intron 30.0%
TTTCTGTTGTAACTAGACAT+AGG + chr1.3:5112475-5112494 None:intergenic 30.0%
! AAGAGCACACAACAAAAAAA+AGG + chr1.3:5113092-5113111 None:intergenic 30.0%
! ATAAGACAATGCAGCATTTT+GGG + chr1.3:5112437-5112456 None:intergenic 30.0%
! CTTATCTTCTTCCTGTTTTA+GGG - chr1.3:5112802-5112821 MS.gene051667:CDS 30.0%
! TCTTATCTTCTTCCTGTTTT+AGG - chr1.3:5112801-5112820 MS.gene051667:CDS 30.0%
! TTTTTGCACAGTATACTAGA+GGG - chr1.3:5112842-5112861 MS.gene051667:CDS 30.0%
!! ATGTTTTTGATTGATGCAGT+GGG - chr1.3:5114148-5114167 MS.gene051667:intron 30.0%
!! TATGTTTTTGATTGATGCAG+TGG - chr1.3:5114147-5114166 MS.gene051667:intron 30.0%
!! TGAAAGTGTGAGTTTTTCAT+TGG + chr1.3:5115584-5115603 None:intergenic 30.0%
!!! AAATTTTTTAGCTCCCCAAA+TGG + chr1.3:5112616-5112635 None:intergenic 30.0%
!!! ACTACACTTTTTTCTTCTGA+TGG - chr1.3:5112343-5112362 MS.gene051667:CDS 30.0%
AAATCTCATGACTGATGGTT+GGG - chr1.3:5115846-5115865 MS.gene051667:CDS 35.0%
AAATTGCAAAAAGGGGCTAA+TGG - chr1.3:5113634-5113653 MS.gene051667:CDS 35.0%
AACCATCAGTCATGAGATTT+AGG + chr1.3:5115846-5115865 None:intergenic 35.0%
AATAACTTGGGAGAGTTCAA+TGG - chr1.3:5115726-5115745 MS.gene051667:CDS 35.0%
AATCACAATAGTCCTCCAAT+TGG - chr1.3:5115871-5115890 MS.gene051667:CDS 35.0%
ACCATCAGTCATGAGATTTA+GGG + chr1.3:5115845-5115864 None:intergenic 35.0%
AGAATAACAACACTAGTGAG+AGG - chr1.3:5115140-5115159 MS.gene051667:intron 35.0%
AGTTTGTGCAATGATCTTCT+AGG - chr1.3:5116003-5116022 MS.gene051667:CDS 35.0%
ATAACTTGGGAGAGTTCAAT+GGG - chr1.3:5115727-5115746 MS.gene051667:CDS 35.0%
ATATGTGAATTGTTACGCTG+TGG + chr1.3:5113879-5113898 None:intergenic 35.0%
ATGTAAGGAGGATGTAGAAA+AGG + chr1.3:5112973-5112992 None:intergenic 35.0%
ATTGAACTCTCCCAAGTTAT+TGG + chr1.3:5115727-5115746 None:intergenic 35.0%
CTAATCTAATCACATTCCGT+TGG + chr1.3:5114976-5114995 None:intergenic 35.0%
CTTGACAAGAGATACATTCA+AGG - chr1.3:5113722-5113741 MS.gene051667:CDS 35.0%
GGAACAACAATAGATGAAGA+AGG + chr1.3:5114457-5114476 None:intergenic 35.0%
GTATGATTCTACAGTACTGT+TGG - chr1.3:5112658-5112677 MS.gene051667:CDS 35.0%
GTGATCATCATTTGCATTGT+AGG + chr1.3:5115794-5115813 None:intergenic 35.0%
GTTTGAACAGGTTATAGTTC+TGG - chr1.3:5113214-5113233 MS.gene051667:intron 35.0%
TAAATCTCATGACTGATGGT+TGG - chr1.3:5115845-5115864 MS.gene051667:CDS 35.0%
TAACTGCACATACATGCATT+TGG + chr1.3:5113412-5113431 None:intergenic 35.0%
TCATATTCTTGGAATGTTCC+TGG + chr1.3:5114519-5114538 None:intergenic 35.0%
TGATGTCATCAACTCATCAT+TGG - chr1.3:5114088-5114107 MS.gene051667:intron 35.0%
TGTTGTAACTAGACATAGGA+TGG + chr1.3:5112471-5112490 None:intergenic 35.0%
! AAACAAATTAGAGTGTCACG+AGG - chr1.3:5114750-5114769 MS.gene051667:intron 35.0%
! AACAAATTAGAGTGTCACGA+GGG - chr1.3:5114751-5114770 MS.gene051667:intron 35.0%
! ATTTCTCTTGATAGCCTAAG+AGG + chr1.3:5115607-5115626 None:intergenic 35.0%
! CATAAGACAATGCAGCATTT+TGG + chr1.3:5112438-5112457 None:intergenic 35.0%
! GCAGTACTTTTGATCAACAA+CGG + chr1.3:5114272-5114291 None:intergenic 35.0%
! GTTTTTGCACAGTATACTAG+AGG - chr1.3:5112841-5112860 MS.gene051667:CDS 35.0%
! TCTTCATCTATTGTTGTTCC+TGG - chr1.3:5114457-5114476 MS.gene051667:intron 35.0%
! TTAGCCCCTTTTTGCAATTT+TGG + chr1.3:5113634-5113653 None:intergenic 35.0%
!! GTTTTATTGTTTTCTGCCCT+TGG + chr1.3:5115967-5115986 None:intergenic 35.0%
!! TGTGAGTTTTTCATTGGTTG+CGG + chr1.3:5115578-5115597 None:intergenic 35.0%
!! TTGATCAAAAGTACTGCGAA+AGG - chr1.3:5114275-5114294 MS.gene051667:intron 35.0%
!! TTTGGTTTCAACTCTAGAGT+GGG + chr1.3:5115199-5115218 None:intergenic 35.0%
AAAACCCATCTCCCTAAAAC+AGG + chr1.3:5112816-5112835 None:intergenic 40.0%
AACTCACACTTTCACCTCTT+AGG - chr1.3:5115590-5115609 MS.gene051667:intron 40.0%
AATGATGATCACTATGGCAG+AGG - chr1.3:5115802-5115821 MS.gene051667:CDS 40.0%
ACACCTAACCCCATTTGAAT+AGG + chr1.3:5115634-5115653 None:intergenic 40.0%
ACATACATGCATTTGGTCTG+AGG + chr1.3:5113405-5113424 None:intergenic 40.0%
ACTTCAACCATTACTCCAAG+TGG - chr1.3:5114397-5114416 MS.gene051667:intron 40.0%
AGAATTGTGACTGAACATCG+TGG - chr1.3:5114886-5114905 MS.gene051667:CDS 40.0%
AGATAAGCCAGCAGAATCAA+GGG + chr1.3:5113365-5113384 None:intergenic 40.0%
AGTAGTAGCAGCTGTATTTG+TGG + chr1.3:5114377-5114396 None:intergenic 40.0%
AGTCGTCGATAAAATGCCTA+AGG + chr1.3:5115414-5115433 None:intergenic 40.0%
ATCAGTCATGAGATTTAGGG+CGG + chr1.3:5115842-5115861 None:intergenic 40.0%
ATCTGCTTTGATGAACCACT+TGG + chr1.3:5114415-5114434 None:intergenic 40.0%
ATTCAAATGGGGTTAGGTGT+TGG - chr1.3:5115634-5115653 MS.gene051667:intron 40.0%
ATTCACACCTTCTCAATGGA+TGG - chr1.3:5113255-5113274 MS.gene051667:intron 40.0%
CACCTAACCCCATTTGAATA+GGG + chr1.3:5115633-5115652 None:intergenic 40.0%
GATTCTACAGTACTGTTGGA+GGG - chr1.3:5112662-5112681 MS.gene051667:CDS 40.0%
GGAGAACAGATGGAAAGAAA+TGG - chr1.3:5114230-5114249 MS.gene051667:intron 40.0%
GGTTGAAAACATGTCATGTG+AGG - chr1.3:5113970-5113989 MS.gene051667:CDS 40.0%
GTCCTTCAAAAGACTGCATT+CGG - chr1.3:5115910-5115929 MS.gene051667:CDS 40.0%
GTCGTCGATAAAATGCCTAA+GGG + chr1.3:5115413-5115432 None:intergenic 40.0%
TAGATAAGCCAGCAGAATCA+AGG + chr1.3:5113366-5113385 None:intergenic 40.0%
TCCTCGAGGAACAATGAATT+CGG - chr1.3:5115268-5115287 MS.gene051667:intron 40.0%
TGAAAACATGTCATGTGAGG+TGG - chr1.3:5113973-5113992 MS.gene051667:CDS 40.0%
TGATGAACCACTTGGAGTAA+TGG + chr1.3:5114407-5114426 None:intergenic 40.0%
TGATTCTACAGTACTGTTGG+AGG - chr1.3:5112661-5112680 MS.gene051667:CDS 40.0%
TGGAGTGAGTTTAGAAGGTT+TGG - chr1.3:5112153-5112172 MS.gene051667:CDS 40.0%
TGGTACAACAACAATGGATC+TGG - chr1.3:5112205-5112224 MS.gene051667:CDS 40.0%
TGTGAGGTGGAGTAGTAATA+TGG - chr1.3:5113986-5114005 MS.gene051667:CDS 40.0%
TTTCATATGATGAGTCCTCG+AGG - chr1.3:5115254-5115273 MS.gene051667:intron 40.0%
TTTCTGTGAAGGGTTCAGAA+GGG + chr1.3:5115311-5115330 None:intergenic 40.0%
TTTGATTGATGCAGTGGGAT+GGG - chr1.3:5114153-5114172 MS.gene051667:intron 40.0%
! AAAGTGGAGGTTTTCTGTGA+AGG + chr1.3:5115322-5115341 None:intergenic 40.0%
! AAGTGGAGGTTTTCTGTGAA+GGG + chr1.3:5115321-5115340 None:intergenic 40.0%
! ATCCATTGAGAAGGTGTGAA+TGG + chr1.3:5113256-5113275 None:intergenic 40.0%
! ATCCGAATGCAGTCTTTTGA+AGG + chr1.3:5115915-5115934 None:intergenic 40.0%
! CTTTGGTTTCAACTCTAGAG+TGG + chr1.3:5115200-5115219 None:intergenic 40.0%
! GAATCAAGGGCTTTTCTGAT+AGG + chr1.3:5113352-5113371 None:intergenic 40.0%
! GTTTTGTGAAGATGAACCGA+AGG + chr1.3:5115359-5115378 None:intergenic 40.0%
! TCATCTATTGTTGTTCCTGG+TGG - chr1.3:5114460-5114479 MS.gene051667:intron 40.0%
! TGGTGATCTGAGTGAGTTTT+GGG + chr1.3:5115439-5115458 None:intergenic 40.0%
! TTTTCTGTGAAGGGTTCAGA+AGG + chr1.3:5115312-5115331 None:intergenic 40.0%
!! CACTCTAGAGTTGAAACCAA+AGG - chr1.3:5115198-5115217 MS.gene051667:intron 40.0%
!! CTAGTTTTCTGACCTGTTGA+TGG + chr1.3:5114584-5114603 None:intergenic 40.0%
!! GATCTTCTAGGATCAACTCT+TGG - chr1.3:5116015-5116034 MS.gene051667:CDS 40.0%
!! TATAGTTCTGGAAGCATGCA+TGG - chr1.3:5113226-5113245 MS.gene051667:intron 40.0%
!! TTGGTGATCTGAGTGAGTTT+TGG + chr1.3:5115440-5115459 None:intergenic 40.0%
!! TTTTGATTGATGCAGTGGGA+TGG - chr1.3:5114152-5114171 MS.gene051667:intron 40.0%
!!! TCTTCCTGTTTTAGGGAGAT+GGG - chr1.3:5112809-5112828 MS.gene051667:CDS 40.0%
!!! TTCTTCCTGTTTTAGGGAGA+TGG - chr1.3:5112808-5112827 MS.gene051667:CDS 40.0%
AAACATGTCATGTGAGGTGG+TGG - chr1.3:5113976-5113995 MS.gene051667:CDS 45.0%
ACAGAAAACCTCCACTTTGC+TGG - chr1.3:5115324-5115343 MS.gene051667:intron 45.0%
ACCTTCTCAATGGATGGAGT+TGG - chr1.3:5113261-5113280 MS.gene051667:intron 45.0%
AGAAAAGCCCTTGATTCTGC+TGG - chr1.3:5113355-5113374 MS.gene051667:intron 45.0%
AGATGAAGAACCTCTCCAAG+TGG + chr1.3:5115757-5115776 None:intergenic 45.0%
ATACTCGAACAACACCGATC+CGG - chr1.3:5114192-5114211 MS.gene051667:intron 45.0%
ATGAAGTCCGAGGAAGTCAT+CGG + chr1.3:5115541-5115560 None:intergenic 45.0%
ATGGATGGAGTTGGAACATC+AGG - chr1.3:5113270-5113289 MS.gene051667:intron 45.0%
CAGAAAACCTCCACTTTGCT+GGG - chr1.3:5115325-5115344 MS.gene051667:intron 45.0%
CCTCGAGGAACAATGAATTC+GGG - chr1.3:5115269-5115288 MS.gene051667:intron 45.0%
CTTGGTGGAGTGAGTTTAGA+AGG - chr1.3:5112148-5112167 MS.gene051667:CDS 45.0%
GACCATTCACACCTTCTCAA+TGG - chr1.3:5113251-5113270 MS.gene051667:intron 45.0%
GACCCTATTCAAATGGGGTT+AGG - chr1.3:5115628-5115647 MS.gene051667:intron 45.0%
GCCCTAAATCTCATGACTGA+TGG - chr1.3:5115841-5115860 MS.gene051667:CDS 45.0%
GTGAAGATGAACCGAAGGTT+CGG + chr1.3:5115354-5115373 None:intergenic 45.0%
TCACTTTCGAATAGTAGCGC+CGG - chr1.3:5115934-5115953 MS.gene051667:CDS 45.0%
TCCAACTCCATCCATTGAGA+AGG + chr1.3:5113265-5113284 None:intergenic 45.0%
TGAAGATGAACCGAAGGTTC+GGG + chr1.3:5115353-5115372 None:intergenic 45.0%
TGAAGGGTTCAGAAGGGAAT+CGG + chr1.3:5115305-5115324 None:intergenic 45.0%
TGTATTTGTGGTTCCACCAG+TGG + chr1.3:5114365-5114384 None:intergenic 45.0%
TGTTGTTCGAGTATCCCAGA+TGG + chr1.3:5114186-5114205 None:intergenic 45.0%
TTCAACACCGATGACTTCCT+CGG - chr1.3:5115531-5115550 MS.gene051667:intron 45.0%
TTGATTGATGCAGTGGGATG+GGG - chr1.3:5114154-5114173 MS.gene051667:intron 45.0%
TTGCAAAAAGGGGCTAATGG+AGG - chr1.3:5113637-5113656 MS.gene051667:CDS 45.0%
! ACTGTTGGAGGGTCTTTTCA+TGG - chr1.3:5112673-5112692 MS.gene051667:CDS 45.0%
! TGCGAAAGGCATATGAACAG+AGG - chr1.3:5114289-5114308 MS.gene051667:intron 45.0%
!! GAGTTTTTCATTGGTTGCGG+AGG + chr1.3:5115575-5115594 None:intergenic 45.0%
!! TGCAGTCTTTTGAAGGACTC+CGG + chr1.3:5115908-5115927 None:intergenic 45.0%
!! TTCTGACCTGTTGATGGTGT+TGG + chr1.3:5114578-5114597 None:intergenic 45.0%
AACCCTACAAACCGAGATGC+AGG - chr1.3:5115376-5115395 MS.gene051667:intron 50.0%
ACTAGTGAGAGGATGCAGGA+TGG - chr1.3:5115151-5115170 MS.gene051667:intron 50.0%
ACTTGGGAGAGTTCAATGGG+TGG - chr1.3:5115730-5115749 MS.gene051667:CDS 50.0%
AGCTCGACATGCAGTCTGAT+AGG - chr1.3:5115494-5115513 MS.gene051667:intron 50.0%
AGTTCAATGGGTGGTCCACT+TGG - chr1.3:5115739-5115758 MS.gene051667:CDS 50.0%
ATTGCTGAGAGCCTGCATCT+CGG + chr1.3:5115390-5115409 None:intergenic 50.0%
CAACACTAGTGAGAGGATGC+AGG - chr1.3:5115147-5115166 MS.gene051667:intron 50.0%
CAACATCATAACCGCTCAGG+TGG - chr1.3:5115457-5115476 MS.gene051667:intron 50.0%
CACCAACATCATAACCGCTC+AGG - chr1.3:5115454-5115473 MS.gene051667:intron 50.0%
CACCTGAGCGGTTATGATGT+TGG + chr1.3:5115459-5115478 None:intergenic 50.0%
CCAATTGGATCATCGCCAAC+CGG - chr1.3:5115886-5115905 MS.gene051667:CDS 50.0%
CCACAGGCTTTCTTGAACGA+TGG + chr1.3:5114318-5114337 None:intergenic 50.0%
CCATCGTTCAAGAAAGCCTG+TGG - chr1.3:5114315-5114334 MS.gene051667:intron 50.0%
CCCGAATTCATTGTTCCTCG+AGG + chr1.3:5115272-5115291 None:intergenic 50.0%
CGTTCAAGAAAGCCTGTGGA+AGG - chr1.3:5114319-5114338 MS.gene051667:intron 50.0%
GATAGCGTGTCACACGTTCA+AGG - chr1.3:5113783-5113802 MS.gene051667:CDS 50.0%
GCCAAGAAAAACCACCTGAG+CGG + chr1.3:5115471-5115490 None:intergenic 50.0%
GTTGGCGATGATCCAATTGG+AGG + chr1.3:5115886-5115905 None:intergenic 50.0%
TCTGTTCTCCTACACCTTCC+TGG + chr1.3:5114220-5114239 None:intergenic 50.0%
TGTCTCTATGACGGCTGTTG+AGG - chr1.3:5114823-5114842 MS.gene051667:CDS 50.0%
TTCTGCCCTTGGACTACTAC+CGG + chr1.3:5115956-5115975 None:intergenic 50.0%
TTGGAAACAGTGTTGCCACC+AGG + chr1.3:5114478-5114497 None:intergenic 50.0%
! ACCGCTCAGGTGGTTTTTCT+TGG - chr1.3:5115467-5115486 MS.gene051667:intron 50.0%
! AGCCTGCATCTCGGTTTGTA+GGG + chr1.3:5115381-5115400 None:intergenic 50.0%
! CTCAGGTGGTTTTTCTTGGC+CGG - chr1.3:5115471-5115490 MS.gene051667:intron 50.0%
! GGAAGGTGTAGGAGAACAGA+TGG - chr1.3:5114220-5114239 MS.gene051667:intron 50.0%
! GTGTGCAAAGCTAAGAGCGT+TGG + chr1.3:5114497-5114516 None:intergenic 50.0%
!! AGTTCTGGAAGCATGCATGG+AGG - chr1.3:5113229-5113248 MS.gene051667:intron 50.0%
!! GGTTTCAACTCTAGAGTGGG+TGG + chr1.3:5115196-5115215 None:intergenic 50.0%
!! GTCTTTTGAAGGACTCCGGT+TGG + chr1.3:5115904-5115923 None:intergenic 50.0%
AACAACACCGATCCGGAACC+AGG - chr1.3:5114199-5114218 MS.gene051667:intron 55.0%
AAGCCTGTGGAAGGCCAATC+TGG - chr1.3:5114328-5114347 MS.gene051667:intron 55.0%
AATGGGTGGTCCACTTGGAG+AGG - chr1.3:5115744-5115763 MS.gene051667:CDS 55.0%
ACACCTTCCTGGTTCCGGAT+CGG + chr1.3:5114209-5114228 None:intergenic 55.0%
ACGGCTCAGATCATAGTCGC+AGG + chr1.3:5114787-5114806 None:intergenic 55.0%
ATTGATGCAGTGGGATGGGG+AGG - chr1.3:5114157-5114176 MS.gene051667:intron 55.0%
CAGGCTCTCAGCAATCCCTT+AGG - chr1.3:5115395-5115414 MS.gene051667:intron 55.0%
CCGGTTGGCGATGATCCAAT+TGG + chr1.3:5115889-5115908 None:intergenic 55.0%
CGTGAACGACATGAAGTCCG+AGG + chr1.3:5115551-5115570 None:intergenic 55.0%
CTCCTACACCTTCCTGGTTC+CGG + chr1.3:5114214-5114233 None:intergenic 55.0%
CTGCTGCCAACACCATCAAC+AGG - chr1.3:5114569-5114588 MS.gene051667:intron 55.0%
GGATGGGGAGGATTCCATCT+GGG - chr1.3:5114169-5114188 MS.gene051667:intron 55.0%
TCAGACTGCATGTCGAGCTC+CGG + chr1.3:5115493-5115512 None:intergenic 55.0%
TGCGACTATGATCTGAGCCG+TGG - chr1.3:5114786-5114805 MS.gene051667:CDS 55.0%
TTGCTGGGAACCCGAACCTT+CGG - chr1.3:5115340-5115359 MS.gene051667:intron 55.0%
! ATCCGGAACCAGGAAGGTGT+AGG - chr1.3:5114209-5114228 MS.gene051667:intron 55.0%
! GAGCCTGCATCTCGGTTTGT+AGG + chr1.3:5115382-5115401 None:intergenic 55.0%
! TCTAGAGTGGGTGGCAGCAT+TGG + chr1.3:5115187-5115206 None:intergenic 55.0%
!! CGCTCTTAGCTTTGCACACC+AGG - chr1.3:5114498-5114517 MS.gene051667:intron 55.0%
!! TAGCGCCGGTAGTAGTCCAA+GGG - chr1.3:5115948-5115967 MS.gene051667:CDS 55.0%
ACACCGATCCGGAACCAGGA+AGG - chr1.3:5114203-5114222 MS.gene051667:intron 60.0%
GGGATGGGGAGGATTCCATC+TGG - chr1.3:5114168-5114187 MS.gene051667:intron 60.0%
TCGGGTTCCCAGCAAAGTGG+AGG + chr1.3:5115335-5115354 None:intergenic 60.0%
TGGTGAGAGCCTGGCCAGAT+TGG + chr1.3:5114345-5114364 None:intergenic 60.0%
TGTGGAAGGCCAATCTGGCC+AGG - chr1.3:5114333-5114352 MS.gene051667:intron 60.0%
TTCCACCAGTGGTGAGAGCC+TGG + chr1.3:5114354-5114373 None:intergenic 60.0%
! GGTTCGGGTTCCCAGCAAAG+TGG + chr1.3:5115338-5115357 None:intergenic 60.0%
!! GGTGGCAGCATTGGTAGTGC+AGG + chr1.3:5115178-5115197 None:intergenic 60.0%
!! GTAGCGCCGGTAGTAGTCCA+AGG - chr1.3:5115947-5115966 MS.gene051667:CDS 60.0%
!! TGGCCAGATTGGCCTTCCAC+AGG + chr1.3:5114334-5114353 None:intergenic 60.0%
TCTGGCCAGGCTCTCACCAC+TGG - chr1.3:5114346-5114365 MS.gene051667:intron 65.0%
GGCCAGGCTCTCACCACTGG+TGG - chr1.3:5114349-5114368 MS.gene051667:intron 70.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 5112142 5116062 5112142 ID=MS.gene051667
chr1.3 mRNA 5112142 5116062 5112142 ID=MS.gene051667.t1;Parent=MS.gene051667
chr1.3 exon 5115705 5116062 5115705 ID=MS.gene051667.t1.exon1;Parent=MS.gene051667.t1
chr1.3 CDS 5115705 5116062 5115705 ID=cds.MS.gene051667.t1;Parent=MS.gene051667.t1
chr1.3 exon 5114786 5114980 5114786 ID=MS.gene051667.t1.exon2;Parent=MS.gene051667.t1
chr1.3 CDS 5114786 5114980 5114786 ID=cds.MS.gene051667.t1;Parent=MS.gene051667.t1
chr1.3 exon 5113614 5114037 5113614 ID=MS.gene051667.t1.exon3;Parent=MS.gene051667.t1
chr1.3 CDS 5113614 5114037 5113614 ID=cds.MS.gene051667.t1;Parent=MS.gene051667.t1
chr1.3 exon 5112142 5113084 5112142 ID=MS.gene051667.t1.exon4;Parent=MS.gene051667.t1
chr1.3 CDS 5112142 5113084 5112142 ID=cds.MS.gene051667.t1;Parent=MS.gene051667.t1
Gene Sequence

>MS.gene051667

ATGGATCTTGGTGGAGTGAGTTTAGAAGGTTTGGTTAGTTCAGATCCTGAGTCAAAAAATAAATGGTACAACAACAATGGATCTGGTTTACTTAAACAAGAGAGATCTGGAACATGTACTGAAGATGAGTTAAGAAGTTTCAAACTTGCAAAAACTGATCAACAAAGAAACTCTTCTTCACTTTTGAGATCTAATGCTACTACTACACTTTTTTCTTCTGATGGTCAACAACAAATGCTTAGTTTTTCAACTCCTACTTCAAAATCTGAATCTTTTTTACTTGACAAAACTACCCAAAATGCTGCATTGTCTTATGCTGCTTCTTACCATCCTATGTCTAGTTACAACAGAAATACAGGTACAACATTTTTTTTTAGGTTGTTTTTTATATCTATCAAAATATATAAATTAAAAAATTTATATATTTTGGATTTGGATATTTTTGTATGTATTTATGAATCTATATGGTATCCATTTGGGGAGCTAAAAAATTTATAAGGTTGTTATAGTTATAAGGTATGATTCTACAGTACTGTTGGAGGGTCTTTTCATGGAAATATATTTTTTGAGTGGTCTCATTTTTTTAAGTCATGTCAAGAAAAAAGGAACATAGGAGAAAAAATAAATTTTGTATTTTTTTTATTTATTTATAATAAAATTCTTATCTTCTTCCTGTTTTAGGGAGATGGGTTTTTGTGAGTTTTTGCACAGTATACTAGAGGGTACTAAAGAAGAAAAATTTATGAGCTATAATATGTAGGAAAAAAAAGCTACAAAATTTTGATTGGTTCTGTTCTGTACCATCTTTCTGTAAAAAATCTGTTCTTTCCTTTTCTACATCCTCCTTACATGAAAATAAATAAAAAAAATCTAAAAGTTGACTTGACTGTTATTATTTCTTCAAACTCAGAAAAAAATTATTAATTTTTTTTTTCTTCAGACTATAGCCTTTTTTTTGTTGTGTGCTCTTTTTGAGTTCTGAACTGAATCAACTTTTTTTGTTTTGGTTTTAAGTTCTGATTTTTTTTTTTTGTTACCTTTTTTGACTTTACCTTGATGTTTGTTGAATACTGTTTGAACAGGTTATAGTTCTGGAAGCATGCATGGAGGACCATTCACACCTTCTCAATGGATGGAGTTGGAACATCAGGCTTTGATCTATAAGTACATCACTGCAAATGTTGCTGTACCTCATCATTTGCTTTTACCTATCAGAAAAGCCCTTGATTCTGCTGGCTTATCTAGCTTCTCAACTGCTCTCCTCAGACCAAATGCATGTATGTGCAGTTAGTTCCCTTTTTCCTTGCCTAATTAATACTAACAAAGATAAACATTATTGGATTTTTTTTAATTAGAGACAAATAAAATGAAATTTGTCTCTGATTTGTCTTTTAATGTTAAAGATGTCAAAATTTTAGATTATTTTTTTTCCAATCATTTTGGTCCTTAAATTGAATGTGTGAGATTGTCACTGTAGTCCCTAAATGTACCAAAATTGCAAAAAGGGGCTAATGGAGGACACATACAAAGACCTGCACTAAACTATAAGAAACATATTCCAAGACTAAACTGATTTACAACTTGACAAGAGATACATTCAAGGATGTTTTTTGTAATTTTGGTTAATTTAAGGACTATAGTGATAGCGTGTCACACGTTCAAGGATCAAAATGCCCTTTGCATTATATTAGAAAATAAGGCCGAATCAAATTTGTGTTTGAAGGGATTAGTCTTCCACAGCGTAACAATTCACATATGAATCATTCAAAAGTCAATGTGGAAAAGTGATATGTGTTTTGTTTGTCTTTGAAAAAACAAATTGATCGTTGGTTGAAAACATGTCATGTGAGGTGGAGTAGTAATATGGAAAAGTGATTAGTGTTTTGTTTGTTTCTATGTTTTGCTTTTTTTAAATGATTGACCTTGATTGTTAGTTTTCAACTACTTGATGTCATCAACTCATCATTGGTTGAAAACATGTCATGTGAGGTGGTGGAGTGAGTAATATGTTTTTGATTGATGCAGTGGGATGGGGAGGATTCCATCTGGGATACTCGAACAACACCGATCCGGAACCAGGAAGGTGTAGGAGAACAGATGGAAAGAAATGGCGATGCTCAAGAGATGCCGTTGTTGATCAAAAGTACTGCGAAAGGCATATGAACAGAGGACGCCATCGTTCAAGAAAGCCTGTGGAAGGCCAATCTGGCCAGGCTCTCACCACTGGTGGAACCACAAATACAGCTGCTACTACTACTTCAACCATTACTCCAAGTGGTTCATCAAAGCAGATCAATTCTGCTGCTGCTTCTCCTTCTTCATCTATTGTTGTTCCTGGTGGCAACACTGTTTCCAACGCTCTTAGCTTTGCACACCAGGAACATTCCAAGAATATGAACAACCTTATTGGACAAGATAATGCTTCTTCTGCTGCCAACACCATCAACAGGTCAGAAAACTAGTGTTTTACAGTTTTATAGTTATTGTTTACTCCTTGATTTTGTTAAAAATAACTTTTTCAAATAAGAAAAATACCTATAGTACTAATCAATATGTAGGTAACATCTAATTACTCTACTATTTTTAATTACTTAATATTTTTTTAAAAAAACAAATTAGAGTGTCACGAGGGTTTTTCAAAGCCTGCGACTATGATCTGAGCCGTGGCATCATGTATTTTATGTCTCTATGACGGCTGTTGAGGCTGCATCAACCGTAATTGATTGTGATTCTCTACAATATCAAGAATTGTGACTGAACATCGTGGTCATTATATTCCGTTATTCATTTAGGGACTACACTGTTTCAAAGTCATTATTGCAAGAAATGTACCAACGGAATGTGATTAGATTAGTGATTGTGTTCAAAACTATTTTTTTGCATTTTAAATTTTGTTACTTTTGTGTATAAGGGATAAATTCAGGAAATGTGCTTTTTCTATATTGTGTTTGAAAGTTTTTTTTGTTTCTTGTTTGCAGGATGTTCATGAATAACAAAGAGAATAACAACACTAGTGAGAGGATGCAGGATGGTCCTGCACTACCAATGCTGCCACCCACTCTAGAGTTGAAACCAAAGGAAAATCAATCTTTCATGATTCAAAAGCAGCACATTTCATATGATGAGTCCTCGAGGAACAATGAATTCGGGTTTGTCACTTCCGATTCCCTTCTGAACCCTTCACAGAAAACCTCCACTTTGCTGGGAACCCGAACCTTCGGTTCATCTTCACAAAACCCTACAAACCGAGATGCAGGCTCTCAGCAATCCCTTAGGCATTTTATCGACGACTTTCCCAAAACTCACTCAGATCACCAACATCATAACCGCTCAGGTGGTTTTTCTTGGCCGGAGCTCGACATGCAGTCTGATAGGACACAACTATCAATTTCAACACCGATGACTTCCTCGGACTTCATGTCGTTCACGTCCTCCGCAACCAATGAAAAACTCACACTTTCACCTCTTAGGCTATCAAGAGAAATAGACCCTATTCAAATGGGGTTAGGTGTTGGAAGTAGTGCTCTCAATAACAACAATGAATCATCAAACACTAATACTACAAAGCAAGCTAATTGGATTCCAATAACTTGGGAGAGTTCAATGGGTGGTCCACTTGGAGAGGTTCTTCATCTTAGTAATACTATTACCTACAATGCAAATGATGATCACTATGGCAGAGGCAACAACAATTCGTCCGCCCTAAATCTCATGACTGATGGTTGGGACAATCACAATAGTCCTCCAATTGGATCATCGCCAACCGGAGTCCTTCAAAAGACTGCATTCGGATCACTTTCGAATAGTAGCGCCGGTAGTAGTCCAAGGGCAGAAAACAATAAAACAACTCAAGAAGGAGCTAGTTTGTGCAATGATCTTCTAGGATCAACTCTTGGTAATAATACTTCCTTTACTCCTTAG
Protein sequence

>MS.gene051667.t1

MDLGGVSLEGLVSSDPESKNKWYNNNGSGLLKQERSGTCTEDELRSFKLAKTDQQRNSSSLLRSNATTTLFSSDGQQQMLSFSTPTSKSESFLLDKTTQNAALSYAASYHPMSSYNRNTGYSSGSMHGGPFTPSQWMELEHQALIYKYITANVAVPHHLLLPIRKALDSAGLSSFSTALLRPNALGWGGFHLGYSNNTDPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVEGQSGQALTTGGTTNTAATTTSTITPSGSSKQINSAAASPSSSIVVPGGNTVSNALSFAHQEHSKNMNNLIGQDNASSAANTINRMFMNNKENNNTSERMQDGPALPMLPPTLELKPKENQSFMIQKQHISYDESSRNNEFGFVTSDSLLNPSQKTSTLLGTRTFGSSSQNPTNRDAGSQQSLRHFIDDFPKTHSDHQHHNRSGGFSWPELDMQSDRTQLSISTPMTSSDFMSFTSSATNEKLTLSPLRLSREIDPIQMGLGVGSSALNNNNESSNTNTTKQANWIPITWESSMGGPLGEVLHLSNTITYNANDDHYGRGNNNSSALNLMTDGWDNHNSPPIGSSPTGVLQKTAFGSLSNSSAGSSPRAENNKTTQEGASLCNDLLGSTLGNNTSFTP