Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66614.t1 | KEH29718.1 | 99.4 | 160 | 1 | 0 | 1 | 160 | 1 | 160 | 1.50E-79 | 305.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66614.t1 | A0A072UKU4 | 99.4 | 160 | 1 | 0 | 1 | 160 | 1 | 160 | 1.1e-79 | 305.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051642 | MS.gene66614 | 0.811682 | 6.20E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66614.t1 | MTR_4g050050 | 99.375 | 160 | 1 | 0 | 1 | 160 | 1 | 160 | 3.63e-117 | 328 |
| MS.gene66614.t1 | MTR_4g050050 | 82.383 | 193 | 1 | 1 | 1 | 160 | 1 | 193 | 2.60e-110 | 311 |
| MS.gene66614.t1 | MTR_2g024090 | 47.904 | 167 | 61 | 1 | 3 | 143 | 1 | 167 | 4.05e-48 | 154 |
| MS.gene66614.t1 | MTR_2g450100 | 41.975 | 162 | 65 | 1 | 11 | 143 | 14 | 175 | 1.00e-37 | 127 |
| MS.gene66614.t1 | MTR_7g113900 | 36.601 | 153 | 83 | 3 | 5 | 144 | 11 | 162 | 1.87e-23 | 90.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66614.t1 | AT1G05070 | 59.322 | 177 | 45 | 1 | 11 | 160 | 8 | 184 | 4.23e-70 | 210 |
| MS.gene66614.t1 | AT2G32580 | 58.235 | 170 | 45 | 1 | 11 | 154 | 8 | 177 | 2.18e-65 | 197 |
| MS.gene66614.t1 | AT2G32580 | 69.643 | 112 | 34 | 0 | 43 | 154 | 4 | 115 | 3.85e-52 | 162 |
| MS.gene66614.t1 | AT4G04360 | 47.904 | 167 | 59 | 2 | 12 | 151 | 10 | 175 | 3.42e-45 | 146 |
| MS.gene66614.t1 | AT4G30996 | 44.654 | 159 | 58 | 1 | 15 | 143 | 12 | 170 | 3.58e-41 | 136 |
| MS.gene66614.t1 | AT2G24290 | 47.183 | 142 | 72 | 2 | 3 | 143 | 32 | 171 | 1.40e-37 | 127 |
Find 32 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCCTTCTTTCCATCCTTTC+TGG | 0.011737 | 4.3:+49592787 | None:intergenic |
| TCGGTATCTCCATTAACTTC+TGG | 0.285422 | 4.3:+49593047 | None:intergenic |
| TGCATAGCTGGTTACATATT+AGG | 0.318864 | 4.3:-49595226 | MS.gene66614:CDS |
| AAGCCTGATCCAGAAGTTAA+TGG | 0.329220 | 4.3:-49593056 | MS.gene66614:CDS |
| GAAGCAGACAAGTGTAATTC+TGG | 0.342626 | 4.3:-49592900 | MS.gene66614:CDS |
| GGGCTGAGCAACATTTCATT+TGG | 0.353576 | 4.3:-49593591 | MS.gene66614:CDS |
| AAATCAGCGACGAGCTGATA+TGG | 0.363875 | 4.3:-49592964 | MS.gene66614:CDS |
| TCCATCCTTTCTGGCGAGCT+CGG | 0.384489 | 4.3:+49592796 | None:intergenic |
| GCTACGTGAAAGTCAAGCTT+TGG | 0.416743 | 4.3:-49592988 | MS.gene66614:CDS |
| TCTCCATTAACTTCTGGATC+AGG | 0.419889 | 4.3:+49593053 | None:intergenic |
| TATTAGGTCCACCACTCTAT+TGG | 0.424277 | 4.3:-49595210 | MS.gene66614:CDS |
| GAAGAAAGTAACTTCTTTGT+GGG | 0.443296 | 4.3:-49592823 | MS.gene66614:CDS |
| ATAGTAGCTGTATGCATAGC+TGG | 0.460353 | 4.3:-49595238 | MS.gene66614:CDS |
| CTCTATTGGCATTTCAGAGA+AGG | 0.467266 | 4.3:-49595196 | MS.gene66614:intron |
| AGAAGAAAGTAACTTCTTTG+TGG | 0.476299 | 4.3:-49592824 | MS.gene66614:CDS |
| CGCCAGAAAGGATGGAAAGA+AGG | 0.480798 | 4.3:-49592789 | MS.gene66614:CDS |
| CTGAGCAACATTTCATTTGG+AGG | 0.481438 | 4.3:-49593588 | MS.gene66614:intron |
| TCCGAGCTCGCCAGAAAGGA+TGG | 0.499503 | 4.3:-49592797 | MS.gene66614:CDS |
| TGGAAACGTGTGAGCAGGCA+AGG | 0.502793 | 4.3:-49592875 | MS.gene66614:CDS |
| GGCTCTGCTTGAAGCAAAGA+AGG | 0.510378 | 4.3:-49592943 | MS.gene66614:CDS |
| GGCAAGGGAGAAAGCCGAGT+TGG | 0.512433 | 4.3:-49592859 | MS.gene66614:CDS |
| TGGTATGGAAACGTGTGAGC+AGG | 0.518723 | 4.3:-49592880 | MS.gene66614:CDS |
| GCCAGAAAGGATGGAAAGAA+GGG | 0.533520 | 4.3:-49592788 | MS.gene66614:CDS |
| GGTCGCATCTCAGTATCAAA+AGG | 0.534079 | 4.3:-49592922 | MS.gene66614:CDS |
| AGACAAGTGTAATTCTGGTA+TGG | 0.560534 | 4.3:-49592895 | MS.gene66614:CDS |
| GAACTCCGAGCTCGCCAGAA+AGG | 0.561229 | 4.3:-49592801 | MS.gene66614:CDS |
| CTGAGCGACTAATGCCAACT+CGG | 0.571785 | 4.3:+49592845 | None:intergenic |
| AAATCTAATACTCAGTCTCA+AGG | 0.601505 | 4.3:-49592759 | MS.gene66614:CDS |
| CTGAAATGCCAATAGAGTGG+TGG | 0.644484 | 4.3:+49595202 | None:intergenic |
| GGAAACGTGTGAGCAGGCAA+GGG | 0.646238 | 4.3:-49592874 | MS.gene66614:CDS |
| CCAGAAAGGATGGAAAGAAG+GGG | 0.659202 | 4.3:-49592787 | MS.gene66614:CDS |
| TCTCTGAAATGCCAATAGAG+TGG | 0.674994 | 4.3:+49595199 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAACACAAAAATCATAA+AGG | + | chr4.3:49592967-49592986 | None:intergenic | 15.0% |
| !! | TATGTTATCAATTTAAACAA+AGG | - | chr4.3:49594213-49594232 | MS.gene66614:intron | 15.0% |
| !! | TTTAATTATGATCATGATTT+CGG | + | chr4.3:49594149-49594168 | None:intergenic | 15.0% |
| !!! | AAATCAAATTCATTAGTTTA+AGG | + | chr4.3:49593135-49593154 | None:intergenic | 15.0% |
| !!! | AAATTTGATCTTTTCTTAAT+TGG | - | chr4.3:49593025-49593044 | MS.gene66614:CDS | 15.0% |
| !!! | AATTTGATCTTTTCTTAATT+GGG | - | chr4.3:49593026-49593045 | MS.gene66614:CDS | 15.0% |
| !!! | AGTTGATAAAAAAAAATTGT+CGG | + | chr4.3:49593438-49593457 | None:intergenic | 15.0% |
| !! | AAAGAAAAGAAAAAGAGAAT+TGG | + | chr4.3:49594924-49594943 | None:intergenic | 20.0% |
| !! | AAATTATATGACGAAAACTA+TGG | + | chr4.3:49594194-49594213 | None:intergenic | 20.0% |
| !! | AATTATATGACGAAAACTAT+GGG | + | chr4.3:49594193-49594212 | None:intergenic | 20.0% |
| !! | ACCAAGATATTATATTGTTA+CGG | + | chr4.3:49594257-49594276 | None:intergenic | 20.0% |
| !! | ATATCAAATCATTACTCATA+TGG | + | chr4.3:49593186-49593205 | None:intergenic | 20.0% |
| !! | ATATTATATTGTTACGGTTA+TGG | + | chr4.3:49594251-49594270 | None:intergenic | 20.0% |
| !! | TATCAAATCATTACTCATAT+GGG | + | chr4.3:49593185-49593204 | None:intergenic | 20.0% |
| !! | TTGATTAAGTATAACATGAA+CGG | + | chr4.3:49593901-49593920 | None:intergenic | 20.0% |
| !!! | ATCAATAGGGTTTAAAATAA+AGG | + | chr4.3:49593753-49593772 | None:intergenic | 20.0% |
| !!! | TCTCTTTTTCTTTTCTTTAT+TGG | - | chr4.3:49594926-49594945 | MS.gene66614:intron | 20.0% |
| !!! | TTTTAACTAGATCTTAACAA+GGG | + | chr4.3:49593007-49593026 | None:intergenic | 20.0% |
| !!! | TTTTTAACTAGATCTTAACA+AGG | + | chr4.3:49593008-49593027 | None:intergenic | 20.0% |
| !!! | TTTTTGTCAAAACATGAATA+AGG | - | chr4.3:49594763-49594782 | MS.gene66614:intron | 20.0% |
| ! | AAATCCAAAAATAGGTTAAG+TGG | + | chr4.3:49593799-49593818 | None:intergenic | 25.0% |
| ! | ACCGTAACAATATAATATCT+TGG | - | chr4.3:49594253-49594272 | MS.gene66614:intron | 25.0% |
| ! | AGGAATTATAGTCTTTGTAT+TGG | - | chr4.3:49594783-49594802 | MS.gene66614:intron | 25.0% |
| ! | AGTTCAGTAAGATGAATAAT+TGG | + | chr4.3:49593972-49593991 | None:intergenic | 25.0% |
| ! | ATTATATGACGAAAACTATG+GGG | + | chr4.3:49594192-49594211 | None:intergenic | 25.0% |
| ! | ATTTAAACAAAGGTGAAAGT+AGG | - | chr4.3:49594223-49594242 | MS.gene66614:intron | 25.0% |
| ! | CTTGGTTATCACTAATTAAT+TGG | - | chr4.3:49594271-49594290 | MS.gene66614:intron | 25.0% |
| ! | GTTATTGTAAAAGATGATTC+TGG | + | chr4.3:49594625-49594644 | None:intergenic | 25.0% |
| ! | TCACAACAAAATCCAAAAAT+AGG | + | chr4.3:49593807-49593826 | None:intergenic | 25.0% |
| !! | AATTGAAGCTCTAATTTATG+TGG | + | chr4.3:49594314-49594333 | None:intergenic | 25.0% |
| !! | GCTCTTTTCTATTTGTTTAA+AGG | - | chr4.3:49594365-49594384 | MS.gene66614:intron | 25.0% |
| !! | GTTTCTTGTTGATAAAATGT+TGG | + | chr4.3:49593851-49593870 | None:intergenic | 25.0% |
| !! | TTAATTGGGTTGTTTAAGTT+AGG | - | chr4.3:49593040-49593059 | MS.gene66614:CDS | 25.0% |
| !! | TTTTTCATAAGATCCATTCT+TGG | - | chr4.3:49594686-49594705 | MS.gene66614:intron | 25.0% |
| !!! | CATTTTTTACCTGTGTTTTA+TGG | - | chr4.3:49594880-49594899 | MS.gene66614:intron | 25.0% |
| !!! | GTTTTAAATAGATGTTGTTG+TGG | - | chr4.3:49593615-49593634 | MS.gene66614:intron | 25.0% |
| !!! | TATTTTAAACCCTATTGATG+AGG | - | chr4.3:49593754-49593773 | MS.gene66614:intron | 25.0% |
| AAAAGAGAATTGGTTAGTGA+AGG | + | chr4.3:49594914-49594933 | None:intergenic | 30.0% | |
| AAATCTAATACTCAGTCTCA+AGG | - | chr4.3:49595267-49595286 | MS.gene66614:CDS | 30.0% | |
| AAGAAGACCTAGTTAACTAA+TGG | - | chr4.3:49593511-49593530 | MS.gene66614:intron | 30.0% | |
| AATTTGAAAGCTATGAAGCA+CGG | + | chr4.3:49593325-49593344 | None:intergenic | 30.0% | |
| AGAAGAAAGTAACTTCTTTG+TGG | - | chr4.3:49595202-49595221 | MS.gene66614:CDS | 30.0% | |
| AGACCTAATTAACAAACTAG+TGG | - | chr4.3:49593946-49593965 | MS.gene66614:intron | 30.0% | |
| ATCTTATGAAAAAACCGAAC+GGG | + | chr4.3:49594679-49594698 | None:intergenic | 30.0% | |
| ATTAAGTATAACATGAACGG+AGG | + | chr4.3:49593898-49593917 | None:intergenic | 30.0% | |
| CTATTGACCATTAGTTAACT+AGG | + | chr4.3:49593521-49593540 | None:intergenic | 30.0% | |
| GAAGAAAGTAACTTCTTTGT+GGG | - | chr4.3:49595203-49595222 | MS.gene66614:CDS | 30.0% | |
| GATCTTATGAAAAAACCGAA+CGG | + | chr4.3:49594680-49594699 | None:intergenic | 30.0% | |
| GCTTCATAGCTTTCAAATTA+TGG | - | chr4.3:49593326-49593345 | MS.gene66614:intron | 30.0% | |
| TAAAAAACAAACACACCTTG+TGG | + | chr4.3:49592941-49592960 | None:intergenic | 30.0% | |
| TGTAAGTTTCACATTCAAAC+TGG | + | chr4.3:49593414-49593433 | None:intergenic | 30.0% | |
| TTAAAACCCTTGTCTAATTC+CGG | + | chr4.3:49593602-49593621 | None:intergenic | 30.0% | |
| TTAAGTATAACATGAACGGA+GGG | + | chr4.3:49593897-49593916 | None:intergenic | 30.0% | |
| ! | CAACAAAATGAATGTTTCTG+TGG | + | chr4.3:49594499-49594518 | None:intergenic | 30.0% |
| ! | CTTGTTGATAAAATGTTGGT+TGG | + | chr4.3:49593847-49593866 | None:intergenic | 30.0% |
| ! | TTTTATGATGGTAGGAATGT+AGG | - | chr4.3:49594537-49594556 | MS.gene66614:intron | 30.0% |
| !! | GCATATGATTCATTGATTCA+AGG | + | chr4.3:49593161-49593180 | None:intergenic | 30.0% |
| !! | TAGCTCTGCAAAATTCTTTT+CGG | + | chr4.3:49595001-49595020 | None:intergenic | 30.0% |
| AAGAACAATCACAGAGACAA+GGG | + | chr4.3:49592898-49592917 | None:intergenic | 35.0% | |
| ACCTTTCAAACTATGAAGCA+CGG | - | chr4.3:49593226-49593245 | MS.gene66614:intron | 35.0% | |
| AGACAAGTGTAATTCTGGTA+TGG | - | chr4.3:49595131-49595150 | MS.gene66614:intron | 35.0% | |
| AGCAAAATGCAAACCAAGAA+TGG | + | chr4.3:49594702-49594721 | None:intergenic | 35.0% | |
| CATTAAAAACTGTCGTGTCA+CGG | - | chr4.3:49594123-49594142 | MS.gene66614:intron | 35.0% | |
| GATCTTAACAAGGGCAATTA+AGG | + | chr4.3:49592998-49593017 | None:intergenic | 35.0% | |
| GATTTCAGTGTAGTACATCT+AGG | + | chr4.3:49594477-49594496 | None:intergenic | 35.0% | |
| GCTTCAATTAAACATTGTCG+TGG | - | chr4.3:49594325-49594344 | MS.gene66614:intron | 35.0% | |
| GTGGTTATACCTCATCAATA+GGG | + | chr4.3:49593766-49593785 | None:intergenic | 35.0% | |
| TAAAACTCCGACCATCAATT+TGG | + | chr4.3:49594019-49594038 | None:intergenic | 35.0% | |
| TGCATAGCTGGTTACATATT+AGG | - | chr4.3:49592800-49592819 | MS.gene66614:CDS | 35.0% | |
| TGTGGTTATACCTCATCAAT+AGG | + | chr4.3:49593767-49593786 | None:intergenic | 35.0% | |
| ! | GAATTTTGCAGAGCTATTGT+CGG | - | chr4.3:49595005-49595024 | MS.gene66614:intron | 35.0% |
| ! | GTCTCCACTTAACCTATTTT+TGG | - | chr4.3:49593792-49593811 | MS.gene66614:intron | 35.0% |
| ! | TGGGTTGTTTAAGTTAGGTT+TGG | - | chr4.3:49593045-49593064 | MS.gene66614:CDS | 35.0% |
| !! | TGGCCACTAGTTTGTTAATT+AGG | + | chr4.3:49593952-49593971 | None:intergenic | 35.0% |
| AAAATTCATCTTGCGCACAG+CGG | - | chr4.3:49594844-49594863 | MS.gene66614:intron | 40.0% | |
| AACAACAGCTGCCAAATTGA+TGG | - | chr4.3:49594005-49594024 | MS.gene66614:intron | 40.0% | |
| AAGCCTGATCCAGAAGTTAA+TGG | - | chr4.3:49594970-49594989 | MS.gene66614:intron | 40.0% | |
| AATCTGAGCGGCAACATAAT+TGG | + | chr4.3:49593719-49593738 | None:intergenic | 40.0% | |
| ACCTTGTGGAATTGAGAAAG+TGG | + | chr4.3:49592927-49592946 | None:intergenic | 40.0% | |
| AGAACAATCACAGAGACAAG+GGG | + | chr4.3:49592897-49592916 | None:intergenic | 40.0% | |
| ATAGTAGCTGTATGCATAGC+TGG | - | chr4.3:49592788-49592807 | MS.gene66614:CDS | 40.0% | |
| CAAACTATGAAGCACGGATA+CGG | - | chr4.3:49593232-49593251 | MS.gene66614:intron | 40.0% | |
| CAATGGTTGCATCACAGATA+TGG | - | chr4.3:49594097-49594116 | MS.gene66614:intron | 40.0% | |
| CCTTGTGGAATTGAGAAAGT+GGG | + | chr4.3:49592926-49592945 | None:intergenic | 40.0% | |
| CTCTATTGGCATTTCAGAGA+AGG | - | chr4.3:49592830-49592849 | MS.gene66614:CDS | 40.0% | |
| CTGAGCAACATTTCATTTGG+AGG | - | chr4.3:49594438-49594457 | MS.gene66614:intron | 40.0% | |
| GAAGAACAATCACAGAGACA+AGG | + | chr4.3:49592899-49592918 | None:intergenic | 40.0% | |
| GAAGCAGACAAGTGTAATTC+TGG | - | chr4.3:49595126-49595145 | MS.gene66614:intron | 40.0% | |
| GAAGCTGATCCATAAAACAC+AGG | + | chr4.3:49594892-49594911 | None:intergenic | 40.0% | |
| GTTAAGTGGAGACAACTATG+TGG | + | chr4.3:49593785-49593804 | None:intergenic | 40.0% | |
| GTTTGCAATCTCAATCTGAG+CGG | + | chr4.3:49593731-49593750 | None:intergenic | 40.0% | |
| TATTAGGTCCACCACTCTAT+TGG | - | chr4.3:49592816-49592835 | MS.gene66614:CDS | 40.0% | |
| TCCGTGCTTCATAGTTTGAA+AGG | + | chr4.3:49593230-49593249 | None:intergenic | 40.0% | |
| TCGGTATCTCCATTAACTTC+TGG | + | chr4.3:49594982-49595001 | None:intergenic | 40.0% | |
| TCTCCATTAACTTCTGGATC+AGG | + | chr4.3:49594976-49594995 | None:intergenic | 40.0% | |
| TGTTGTTGTGGTAGAGATTG+TGG | - | chr4.3:49593627-49593646 | MS.gene66614:intron | 40.0% | |
| ! | AGTCACGCTTTTATGATGGT+AGG | - | chr4.3:49594529-49594548 | MS.gene66614:intron | 40.0% |
| ! | ATGAACGGAGGGAATTTGTT+GGG | + | chr4.3:49593886-49593905 | None:intergenic | 40.0% |
| ! | CATCATAAAAGCGTGACTGA+AGG | + | chr4.3:49594527-49594546 | None:intergenic | 40.0% |
| ! | CTTCAGTCACGCTTTTATGA+TGG | - | chr4.3:49594525-49594544 | MS.gene66614:intron | 40.0% |
| ! | TCTTTCACTGTGTTTCTGCA+GGG | - | chr4.3:49594415-49594434 | MS.gene66614:intron | 40.0% |
| !! | TCTCTGAAATGCCAATAGAG+TGG | + | chr4.3:49592830-49592849 | None:intergenic | 40.0% |
| AAATCAGCGACGAGCTGATA+TGG | - | chr4.3:49595062-49595081 | MS.gene66614:intron | 45.0% | |
| AATTCCGGCAGTGCATGTAT+CGG | + | chr4.3:49593587-49593606 | None:intergenic | 45.0% | |
| AGCAGTCACTGTAACGATTG+CGG | - | chr4.3:49594042-49594061 | MS.gene66614:intron | 45.0% | |
| CAACCATTGACCACGATTCT+CGG | + | chr4.3:49594086-49594105 | None:intergenic | 45.0% | |
| CATGAACGGAGGGAATTTGT+TGG | + | chr4.3:49593887-49593906 | None:intergenic | 45.0% | |
| CCAGAAAGGATGGAAAGAAG+GGG | - | chr4.3:49595239-49595258 | MS.gene66614:CDS | 45.0% | |
| CCCACTTTCTCAATTCCACA+AGG | - | chr4.3:49592923-49592942 | MS.gene66614:CDS | 45.0% | |
| CTCAAAGTGACTTCCAACAG+TGG | + | chr4.3:49594573-49594592 | None:intergenic | 45.0% | |
| CTGAAATGCCAATAGAGTGG+TGG | + | chr4.3:49592827-49592846 | None:intergenic | 45.0% | |
| GATGGTAGGAATGTAGGAGT+TGG | - | chr4.3:49594543-49594562 | MS.gene66614:intron | 45.0% | |
| GCCAGAAAGGATGGAAAGAA+GGG | - | chr4.3:49595238-49595257 | MS.gene66614:CDS | 45.0% | |
| GCTACGTGAAAGTCAAGCTT+TGG | - | chr4.3:49595038-49595057 | MS.gene66614:intron | 45.0% | |
| GGGCTGAGCAACATTTCATT+TGG | - | chr4.3:49594435-49594454 | MS.gene66614:intron | 45.0% | |
| GGTCGCATCTCAGTATCAAA+AGG | - | chr4.3:49595104-49595123 | MS.gene66614:intron | 45.0% | |
| GTTGTCAAATACTGCCGATG+CGG | - | chr4.3:49593682-49593701 | MS.gene66614:intron | 45.0% | |
| ! | ACAGCTGCCAAATTGATGGT+CGG | - | chr4.3:49594009-49594028 | MS.gene66614:intron | 45.0% |
| ! | GTCTTTCACTGTGTTTCTGC+AGG | - | chr4.3:49594414-49594433 | MS.gene66614:intron | 45.0% |
| !! | CTGCTGTTTGTTTTCCCGTT+CGG | - | chr4.3:49594662-49594681 | MS.gene66614:intron | 45.0% |
| !! | TGAACGGAGGGAATTTGTTG+GGG | + | chr4.3:49593885-49593904 | None:intergenic | 45.0% |
| ATCTCCGATACATGCACTGC+CGG | - | chr4.3:49593580-49593599 | MS.gene66614:intron | 50.0% | |
| CCCCTTCTTTCCATCCTTTC+TGG | + | chr4.3:49595242-49595261 | None:intergenic | 50.0% | |
| CGCCAGAAAGGATGGAAAGA+AGG | - | chr4.3:49595237-49595256 | MS.gene66614:CDS | 50.0% | |
| CTGAGCGACTAATGCCAACT+CGG | + | chr4.3:49595184-49595203 | None:intergenic | 50.0% | |
| GCACTGCCGGAATTAGACAA+GGG | - | chr4.3:49593593-49593612 | MS.gene66614:CDS | 50.0% | |
| GGCTCTGCTTGAAGCAAAGA+AGG | - | chr4.3:49595083-49595102 | MS.gene66614:intron | 50.0% | |
| GGGGCTATGCTTCAGCAATA+GGG | + | chr4.3:49594173-49594192 | None:intergenic | 50.0% | |
| TGCACTGCCGGAATTAGACA+AGG | - | chr4.3:49593592-49593611 | MS.gene66614:CDS | 50.0% | |
| TGGGGCTATGCTTCAGCAAT+AGG | + | chr4.3:49594174-49594193 | None:intergenic | 50.0% | |
| TGGTATGGAAACGTGTGAGC+AGG | - | chr4.3:49595146-49595165 | MS.gene66614:intron | 50.0% | |
| TGTCAGCGTTGTGTCATGTC+CGG | + | chr4.3:49593267-49593286 | None:intergenic | 50.0% | |
| TTGCCGAGAATCGTGGTCAA+TGG | - | chr4.3:49594080-49594099 | MS.gene66614:intron | 50.0% | |
| ! | AGGAGTTGGAGTACCACTGT+TGG | - | chr4.3:49594557-49594576 | MS.gene66614:intron | 50.0% |
| !! | AACGGAGGGAATTTGTTGGG+GGG | + | chr4.3:49593883-49593902 | None:intergenic | 50.0% |
| !! | GAACGGAGGGAATTTGTTGG+GGG | + | chr4.3:49593884-49593903 | None:intergenic | 50.0% |
| !! | TGGCTTTGATGTTGCCGCAT+CGG | + | chr4.3:49593699-49593718 | None:intergenic | 50.0% |
| ACGATTGCGGTTGCGAATCG+TGG | - | chr4.3:49594055-49594074 | MS.gene66614:intron | 55.0% | |
| ACGGATACGGACACAGACAC+CGG | - | chr4.3:49593245-49593264 | MS.gene66614:intron | 55.0% | |
| CGTGGTATTGCCGAGAATCG+TGG | - | chr4.3:49594073-49594092 | MS.gene66614:intron | 55.0% | |
| GGAAACGTGTGAGCAGGCAA+GGG | - | chr4.3:49595152-49595171 | MS.gene66614:intron | 55.0% | |
| TGGAAACGTGTGAGCAGGCA+AGG | - | chr4.3:49595151-49595170 | MS.gene66614:intron | 55.0% | |
| ! | TCCATCCTTTCTGGCGAGCT+CGG | + | chr4.3:49595233-49595252 | None:intergenic | 55.0% |
| ! | TCCTCAGATTAGCCGTGTCC+CGG | + | chr4.3:49593298-49593317 | None:intergenic | 55.0% |
| ACCGGGACACGGCTAATCTG+AGG | - | chr4.3:49593294-49593313 | MS.gene66614:intron | 60.0% | |
| GAACTCCGAGCTCGCCAGAA+AGG | - | chr4.3:49595225-49595244 | MS.gene66614:CDS | 60.0% | |
| GGCAAGGGAGAAAGCCGAGT+TGG | - | chr4.3:49595167-49595186 | MS.gene66614:intron | 60.0% | |
| TCCGAGCTCGCCAGAAAGGA+TGG | - | chr4.3:49595229-49595248 | MS.gene66614:CDS | 60.0% | |
| ! | GATTAGCCGTGTCCCGGTGT+CGG | + | chr4.3:49593292-49593311 | None:intergenic | 60.0% |
| AACGCTGACACGCCGACACC+GGG | - | chr4.3:49593277-49593296 | MS.gene66614:intron | 65.0% | |
| CAACGCTGACACGCCGACAC+CGG | - | chr4.3:49593276-49593295 | MS.gene66614:intron | 65.0% | |
| GACACGCCGACACCGGGACA+CGG | - | chr4.3:49593283-49593302 | MS.gene66614:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 49592740 | 49595308 | 49592740 | ID=MS.gene66614 |
| chr4.3 | mRNA | 49592740 | 49595308 | 49592740 | ID=MS.gene66614.t1;Parent=MS.gene66614 |
| chr4.3 | exon | 49595197 | 49595308 | 49595197 | ID=MS.gene66614.t1.exon1;Parent=MS.gene66614.t1 |
| chr4.3 | CDS | 49595197 | 49595308 | 49595197 | ID=cds.MS.gene66614.t1;Parent=MS.gene66614.t1 |
| chr4.3 | exon | 49593589 | 49593612 | 49593589 | ID=MS.gene66614.t1.exon2;Parent=MS.gene66614.t1 |
| chr4.3 | CDS | 49593589 | 49593612 | 49593589 | ID=cds.MS.gene66614.t1;Parent=MS.gene66614.t1 |
| chr4.3 | exon | 49592740 | 49593086 | 49592740 | ID=MS.gene66614.t1.exon3;Parent=MS.gene66614.t1 |
| chr4.3 | CDS | 49592740 | 49593086 | 49592740 | ID=cds.MS.gene66614.t1;Parent=MS.gene66614.t1 |
| Gene Sequence |
| Protein sequence |
