AlfalfaGEDB | MS.gene051642

M. sativa cultivar XinJiangDaYe / MS.gene051642

KEGG: K12471
GO: -
PFAM: PF01417.23

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene051642.t1	XP_013465928.1	87.1	550	68	2	1	549	1	548	3.40E-240	840.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene051642.t1	Q8VY07	51.6	572	242	11	1	549	1	560	1.6e-129	464.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene051642.t1	A0A072VD74	87.1	550	68	2	1	549	1	548	2.5e-240	840.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049411	MS.gene051642	0.83505	2.10E-56	-1.69E-46
MS.gene049807	MS.gene051642	0.829744	4.34E-55	-1.69E-46
MS.gene049887	MS.gene051642	0.804614	1.98E-49	-1.69E-46
MS.gene050084	MS.gene051642	0.802666	5.04E-49	-1.69E-46
MS.gene050085	MS.gene051642	0.828016	1.14E-54	-1.69E-46
MS.gene050689	MS.gene051642	0.823821	1.13E-53	-1.69E-46
MS.gene050838	MS.gene051642	0.857581	1.48E-62	-1.69E-46
MS.gene051003	MS.gene051642	0.813298	2.75E-51	-1.69E-46
MS.gene051102	MS.gene051642	0.801919	7.17E-49	-1.69E-46
MS.gene051234	MS.gene051642	0.862928	3.58E-64	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene051642.t1	MTR_1g016980	96.727	550	15	2	1	549	1	548	0.0	1073
MS.gene051642.t1	MTR_7g006280	52.995	217	86	3	5	221	3	203	4.99e-71	245
MS.gene051642.t1	MTR_7g006280	46.835	79	37	1	448	521	788	866	2.98e-13	73.2
MS.gene051642.t1	MTR_7g006100	42.439	205	83	5	31	221	612	795	3.72e-44	167
MS.gene051642.t1	MTR_4g063895	30.137	146	101	1	11	155	16	161	2.37e-17	83.6
MS.gene051642.t1	MTR_4g063895	32.000	125	84	1	32	155	2	126	7.45e-17	81.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene051642.t1	AT5G11710	56.559	587	190	19	1	549	1	560	0.0	543
MS.gene051642.t1	AT5G11710	56.559	587	190	19	1	549	1	560	0.0	543
MS.gene051642.t1	AT5G11710	56.559	587	190	19	1	549	1	560	0.0	543
MS.gene051642.t1	AT2G43160	46.488	299	121	8	5	269	3	296	3.88e-72	243
MS.gene051642.t1	AT2G43160	49.412	255	115	5	5	255	3	247	9.20e-71	244
MS.gene051642.t1	AT2G43160	43.373	83	42	2	446	523	704	786	2.15e-12	70.5
MS.gene051642.t1	AT2G43160	49.412	255	115	5	5	255	3	247	9.20e-71	244
MS.gene051642.t1	AT2G43160	43.373	83	42	2	446	523	704	786	2.15e-12	70.5
MS.gene051642.t1	AT2G43160	49.412	255	115	5	5	255	3	247	9.20e-71	244
MS.gene051642.t1	AT2G43160	43.373	83	42	2	446	523	704	786	2.15e-12	70.5

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Find 121 sgRNAs with CRISPR-Local

Find 374 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGAGAGGTGAATCTGA+AGG	0.598297	1.3:+5567356	MS.gene051642:CDS
AAAGTATCCCTTGTCGATGT+TGG	0.469042	1.3:+5572850	MS.gene051642:CDS
AAAGTGGACAAAGATTACTC+AGG	0.681481	1.3:+5569597	MS.gene051642:CDS
AAGATTGGTTGAAACTGGAA+AGG	0.564709	1.3:+5568838	MS.gene051642:CDS
AAGGTTCTGCACGGTCTGTC+AGG	0.441213	1.3:+5569670	MS.gene051642:CDS
AAGTGCAAGTGTACCTACTG+AGG	0.672364	1.3:+5570767	MS.gene051642:CDS
ACAGTACCATGAGGACCCCA+AGG	0.661607	1.3:-5568552	None:intergenic
ACCACTTGTACTACCATCGG+TGG	0.649891	1.3:-5572264	None:intergenic
ACCCACCAAATTGATAGTTT+TGG	0.328870	1.3:-5573035	None:intergenic
ACTACTAAATGAGGTTGTCC+CGG	0.571326	1.3:-5569487	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATAAAGAGAGGAGATTAGA+TGG	+	chr1.3:5567859-5567878	MS.gene051642:intron	30.0%
AATAAATAGAAAAGGAGCCT+TGG	-	chr1.3:5568336-5568355	None:intergenic	30.0%
AATACAAAGACTAGACTAGA+TGG	+	chr1.3:5571729-5571748	MS.gene051642:intron	30.0%
ACCAATAATATTCACATCGA+TGG	-	chr1.3:5571495-5571514	None:intergenic	30.0%
AGAATAGAATCATTGCAGTA+TGG	-	chr1.3:5570640-5570659	None:intergenic	30.0%
ATATAATGCATTAATCACCC+TGG	-	chr1.3:5572612-5572631	None:intergenic	30.0%
ATGACAATATTAGAGAGTTG+GGG	+	chr1.3:5567757-5567776	MS.gene051642:intron	30.0%
ATTGAAAACAAGTCAACTGT+TGG	-	chr1.3:5572071-5572090	None:intergenic	30.0%
CAATGTAATCATGGAAGAAA+AGG	-	chr1.3:5572545-5572564	None:intergenic	30.0%
CACCATTGGAAAAAAAATGA+AGG	+	chr1.3:5570111-5570130	MS.gene051642:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	5567190	5573068	5567190	ID=MS.gene051642
chr1.3	mRNA	5567190	5573068	5567190	ID=MS.gene051642.t1;Parent=MS.gene051642
chr1.3	exon	5567190	5567230	5567190	ID=MS.gene051642.t1.exon1;Parent=MS.gene051642.t1
chr1.3	CDS	5567190	5567230	5567190	ID=cds.MS.gene051642.t1;Parent=MS.gene051642.t1
chr1.3	exon	5567356	5567407	5567356	ID=MS.gene051642.t1.exon2;Parent=MS.gene051642.t1
chr1.3	CDS	5567356	5567407	5567356	ID=cds.MS.gene051642.t1;Parent=MS.gene051642.t1
chr1.3	exon	5568528	5568607	5568528	ID=MS.gene051642.t1.exon3;Parent=MS.gene051642.t1
chr1.3	CDS	5568528	5568607	5568528	ID=cds.MS.gene051642.t1;Parent=MS.gene051642.t1
chr1.3	exon	5568802	5568880	5568802	ID=MS.gene051642.t1.exon4;Parent=MS.gene051642.t1
chr1.3	CDS	5568802	5568880	5568802	ID=cds.MS.gene051642.t1;Parent=MS.gene051642.t1
chr1.3	exon	5568995	5569078	5568995	ID=MS.gene051642.t1.exon5;Parent=MS.gene051642.t1
chr1.3	CDS	5568995	5569078	5568995	ID=cds.MS.gene051642.t1;Parent=MS.gene051642.t1
chr1.3	exon	5569193	5569338	5569193	ID=MS.gene051642.t1.exon6;Parent=MS.gene051642.t1
chr1.3	CDS	5569193	5569338	5569193	ID=cds.MS.gene051642.t1;Parent=MS.gene051642.t1
chr1.3	exon	5569449	5569691	5569449	ID=MS.gene051642.t1.exon7;Parent=MS.gene051642.t1
chr1.3	CDS	5569449	5569691	5569449	ID=cds.MS.gene051642.t1;Parent=MS.gene051642.t1
chr1.3	exon	5570698	5570828	5570698	ID=MS.gene051642.t1.exon8;Parent=MS.gene051642.t1
chr1.3	CDS	5570698	5570828	5570698	ID=cds.MS.gene051642.t1;Parent=MS.gene051642.t1
chr1.3	exon	5571107	5571300	5571107	ID=MS.gene051642.t1.exon9;Parent=MS.gene051642.t1
chr1.3	CDS	5571107	5571300	5571107	ID=cds.MS.gene051642.t1;Parent=MS.gene051642.t1
chr1.3	exon	5572023	5572398	5572023	ID=MS.gene051642.t1.exon10;Parent=MS.gene051642.t1
chr1.3	CDS	5572023	5572398	5572023	ID=cds.MS.gene051642.t1;Parent=MS.gene051642.t1
chr1.3	exon	5572845	5573068	5572845	ID=MS.gene051642.t1.exon11;Parent=MS.gene051642.t1
chr1.3	CDS	5572845	5573068	5572845	ID=cds.MS.gene051642.t1;Parent=MS.gene051642.t1

Gene Sequence

>MS.gene051642

ATGGATTTCATGAAAGTCTTCGATCAAACCGTTCGAGAAATGTAATGTTACATTTTCAATTCATCCATTTTTTTTTTTTTTTTTTGCATTTCAATTTTCATTTTTTTTTTTAAATTATCAACTTCGAAATATATTTCAATTTTCGTTCTTATTTGATTGATAACAGAAAGAGAGAGGTGAATCTGAAGGTGCTTAAGGTTCCTGAAATCGAACAGAAGGTGAAATTCTAATTTTTATTTTATTTTCATTAAATTTTTTGATATTTTGAAGAATTGTGTTTATTGATTAATAAATATATTTTTCTCAATAAGGATTGTTACATGTATCCGAAATCAAATTGAAATTGTACGAGAATTGGTTGAGGCAGCGTATTTTAACGTAGTTTTTGAATAATTTGTTGATGCTTGTTTTCATAGAATATTAAACTTTAAGAATCTTTGTTCAGTTTGAGAATACATTTTATGTTGTGTTTGATTCCTTCCCTGCAAATGTAAACTGTGGAATGCTTATTAAAGATGAGGATGTTGCGTTGAATGTGTGGTGATACTAGACGAGATAGGATTAGAAATGACAATATTAGAGAGTTGGGGTAGCATCCATCGTAGAAAAGATGGTGGAAACTCAACTTACGGGGTTTGGGCATGCAGAGAGAAGATCTTTAGATTTTGTAATAAAGAGAGGAGATTAGATGGAGGGTAGTCAAATCACTATACGCCGAAAGAGACATAGGAAAACTATTAAGAAAGATCTAGAGATTGATGAGTATGATAGATATATGATAGAACAATATGGCGTAATTTGATCCATGTTGCCAACTCCTCTTAGTGGGATTAGGGTTGGTTTTTGTTGAGTCTGAAATTGATGGTAGCAGCATATGATCACGTAATTTTGGAATAATTTGTTGATGCAAGACAGGTGTTGCATAATTGCTTGTTCTCATACAATCACAAACTTTAAGAACCTTTGTTGAGTTTGATGATACATTTTATGTTTTCTGGCTGATTCTTTCTCTCCAAATGTAAACTGTGGAATGCATGTTTAAATTGCAAAGTATATCAGTAATGCTTAATAAAGGGAATTGCACATCTTAACAATGTTTTTGGTTTCAATTTGTTTTACATGGAAGCAAATCCAACCACTTTGCCAAGGCTCCTTTTCTATTTATTGAGAATGTCAAAATGTTTTGAAGATTTTCTTTTCTTTTGCTTGAATATTTTATATTTATAACTATATATATGAATGAAGAATAAGAATGTAGATTGATATCCATGCTAGTACCTCACAATCTGCAATCCATCGGTATTGTTTTGATTTTTTCTGCCACTCTTTATAATTTAGGTGTTGGATGCAACTGATGATGAACCTTGGGGTCCTCATGGTACTGTGCTGGCAGAGATTGCAACGGCTACCAAAAAATTGTAAATAGCCATCTGATGCTTTTCCTGTTATATTGCTTTTTAATTTTTGAATTTCTTTTGGTTTTCATGGAGAAAATTTTTGATGCAAGTTAATTGATTGCTTATTTGCTTCTTCTGTACCTCTTTTGGTTTTCATGGAGAAAATTTCTGATGCGAGTTAATTGAATTTCTTTTGCTTCTTCTGTACCTTTCAGTACTGAATGTCAGCTGGTTATGAATGTTCTTTGGACAAGATTGGTTGAAACTGGAAAGGATTGGCGATATGTATACAAGGTATTGTTATCTAAATAACCATGTTATTACTTTAAGTTACAAGGAGAAATGTTTTGTTTTGTTGCATTTTCTTTGTTGATACATCAACTCGCCTCCCTTTCTATTTGACGTCAGGCATTAGCTGTTATAGAGTATTTGGTATCACATGGATCTGAACGTGCAGTTGACGACATTATAGAACATACTTTTCAGATCTCTGTAAGGGTCATTCTCTTGCATTTAGCTAGTTTTTCTTTCAATTCTCAACAGTTCTTATAAATAAATCATAAGAGCAATTTCTTACATAAACACCATATGCTTTTATTGGTAAAGGCACTTTCCAGTTTTGAATATGTTGAGCCTAATGGGAAGGATGTGGGACTCAATGTAAGGAAGAAGGCAGAAAACATTGTTGCCCTTTTGAATGATAGAGAAAAGATACATGATGTCAGAAATAAAGCTGCTGCAAACCGTGACAAGTAGGTCAAATTTGTCAATATTTCAATCCCATAATGATTAGGTAAACTAAGCCACTATTATGGTCTCAGCAAATAATTTTCTTGTTTTTCTTTTGGTGTGCTTAATTTAGGTATGTTGGTGTTTCATCTAGTGGAATCACATACAAATCCGGGACAACCTCATTTAGTAGTGGGAGCAGTAACAAATATGGAGGTTTTGGTTCAAGTGGTGATAGGTTTAGTGATAGCTACGGAGACAAGGGGCGCTATGATGAAGCAAAAGTGGACAAAGATTACTCAGGAAAATCACGCCATGGTGTCTCAAGTAAAACTGAAGAGAACTCCTTCAAAAAAGGTTCTGCACGGTCTGTCAGGTATGGCGTGCAAATAATGGTAAATGTATTTTATGCTTGTTCAGTAGTTCCATACTATAGTTGGATTGTTTTGCCATACCTAATCCTTCGGAAGTTTGAATCTGAAGTATCTAGTGACTACTTTAGCGTGCATTGTCTTGTACATTGTTTTCTGATGCGCCTTATTCGCTACTGTATGTCTAGTTGTGCCCCAAGTTTTTAAACTAGTGAAGCCATTTACCAAGGAGTTTATGAAATTGTTAGTTTTTTTAATAACTTGTTTTTAATAATTTACCTTTTCTTTTCTCATTGAATTTTTTTTTTTCTAAATAATTCATTCATTAACCATATTTCCATGCAGTCTCTTGTCTGCATATCCTAACAAATATATTAAATTTCATTATAATTAGAGCTTACTTTCTATCTTTCTTTACCTTGGACACCATTGGAAAAAAAATGAAGGCTCAAGTTTCGATTCTAATGTTTGTTCTTCATAAAGGAAACTTATTCTTAAAAAAAAGTGTAATTTTTCTCTAATAGGTTTTATGGTCTCTTTTCCTTTAGAAGAAAATGTGTCAATTTTTAGCAGAAGAAAATGTATCTTGTAGATCTATTAAACTGTTACTATTAAAATGTAGGGAAGTGCCCATAAGAAAGATTTCTAATTGCTAAAAATTCTATAAAAGCTGAAATAAGCCTTTAACTAGTCAAAGACAGGCTACCTGTGCATGATACAACTATATGCTCATCACTGGACACATGTCCAGACTCAAACCTTTGATCCTTGATCCTCATTGCCTAGTTCAACAAGCTTATTTTGACTTGGAAAAAATTTATTTTGACTTGGAAAAAATTAAGCAGGAGTTTTGGTAAATGGTTGAGAACTTGAGATGCTTATCTCAACTCATCTTTTTACTTGCACCTGCTTTGGTTTTTATGCACAGAAAGGCACATGCTTCTGCCTCTCCATACTGCAATGATTCTATTCTGTTGCTCATATTCTTATTCCAGAGTGTCTTCCTTGCAGCAAAAGTCAGGAGAACAAATCTTCTAGAGCATCAAAGTCATCTGCTAATGCAAGTGCAGTTCCTTCTCAAAGTGCAAGTGTACCTACTGAGGACGATTTTGATGATTTTGATCCGAGAGGAACATCTACTAGTAAGTATTCTGAACAGTCTTTAACATTGCAGTTGTTGATTCAATTCATATGAGAAATATAAAGCGATTCTTTTTACTGTTTTGTGCGTGGTGCACTTGAAACATTCACAGTTCACACAGAAGCTTTCGCAACTCAATTTATTGTCCTTGAGTATTACAACTCCAAGGCCGCCAAAAAAACGGAAGAAAAACCAAATTGAACAATTGACTATGTATTTTGATTTTGAGGACAGGACTTTTACCTATTAATTGTAATTTTTTTTTCTTACTTCAAACAGAGACTTCAGCTGGAATCTCAAACCAGGTTGATCTCTTTGGACAAGATTTGCTCGGTGACTTCATGGATGCTCCAACATCTGTTTCTGTAGAAAAGCCAGCAACTAGTGATGCGTCAGAGGTTGATCTCTTTGCGGATGCATCATTTGTATCAGCAGCACCACATGCGGACAAAGGAGCTAGTTCTCAACCACAGGTTAAACTTCATTAGCAATAATTTGTGTTGCCGTTGTTTTTTTAATGTTAGCTACCAATTACTCACCTGTTTAATGGCATGAATCTCCGTCATTAGGTTCTATCTTAAAACCTTAAATTTCCACCTTCATTGGTGCTCCAAAAGTATGAATGTTGCCAATATTGAATGAGATTGTTTGACTGCAATTTACTCCATCGATGTGAATATTATTGGTATATTCTTTATTATGAATTGTAACTGAACTAGTATTTTGAGACTGGAATTGTCTTGGAGGAGAACATTAGAAATATTGGTGTTGATAAATTTTCACATGGGTGTATTAATTGCATGTGAGGTAAATTATTCAGCTTATTAAATTGTGATCACAAGTTATTCATTTGAGATAATAACGAGTTTGGACGTTTTTTAGACTTTAGAAGGGATGTAGAAATACAAAGACTAGACTAGATGGAGGATGGTGGATAGTCCAGTAGTTGAAGATAGAGGAGAGAACATGCAAACTTATAGCCCAAACCAATAAAACAGATTTAGAATGAATGATCCATTATTGGACTTAATTCATAACAAGATATTACGTCGTTGTTGGATTTATGCGGTCGAACCCACCTAGTGGAGGAAAATTTGGTTGTATTATGGATTTACCTGTTTAATCTTCTTTCTCCACATTTTCATTCACAGTGCTAAAATTTCGCTTGTGTGTATCTTGTTGATTCCATGCTCAGGATGAAGTGGATCTTTTCTCTTCACAACCCATTCCTTCAGTTACACCAACAGTTGACTTGTTTTCAATTCCTGCACCAGCTGTGCAGCCTGACAGCAAGTCGGAAAACTCTGTTCCTGTGAATAACAGCACTTTTGATCCCTTTGCTTCTGTTCCACTTAATAATTTTGAGGGATCTGATGTTTTTGGTGATTTTACTTCTCAATCTGATTCTGTATCTTCTCAGCCCTCAACTAATGCTGCCACCGATGGTAGTACAAGTGGTAAATCTGTAGCAGACTCTAATGTTCCGCCTAAAAAGGACGCTTTTCAGGTGAAGTCTGGCATTTGGGCTGATTCGCTAAGCCGTGGATTGATTGACCTCAATATATCTGCTCGTAAGTTTTTATGCTGATTACTTTAACAGCTTTTCCACTGCATAATACGTTCTGTGTTGAGTTACTGCTTTATATCCTGTACCTGTATGTTTTCACCCGAAAAAAGCATGTAACTGCATGTTTTAAATATGTAGTTGCATGGTCCTTTTCTTCCATGATTACATTGAAACATATTTAGGGTTTTGGCCTTTTGGGATTCAATCTTGTGTTCCAGGGTGATTAATGCATTATATTGTAGTATGTGTTATCCTTGCTTAAGATTAAGTACATGAATTTGGTAGGAGGTTCTTGGTGAACTAGTGTATTCGTCCACCTCCCCGTTGTTTCCTCCTGTTAAATGGTGAACTAGTGTATCACGAGTCAATCTGTTAAATGATGCACTCGTGAAATATGTAATATGCCAATTATTTTAGTTACTTATGTAATTATCTTATATTATTTTGCAGCCAAAAAAGTATCCCTTGTCGATGTTGGAATTGTGGGTGGACTAAGCGATGGATTAGATGAAAGAGAGAAAGGCCCTCCAACTACATTATACATGGGGAGAGCTATGGGTACAGGATCTGGTCTTGGTATGTATGGTGGCACTCCTTCACAGTCAACAGCTGGAGATGACATATTTTCAAACTTCGGCAGCCAAAACTATCAATTTGGTGGGTTCCAGAAGTAA

Protein sequence

>MS.gene051642.t1

MDFMKVFDQTVREIKREVNLKVLKVPEIEQKVLDATDDEPWGPHGTVLAEIATATKKFTECQLVMNVLWTRLVETGKDWRYVYKALAVIEYLVSHGSERAVDDIIEHTFQISALSSFEYVEPNGKDVGLNVRKKAENIVALLNDREKIHDVRNKAAANRDKYVGVSSSGITYKSGTTSFSSGSSNKYGGFGSSGDRFSDSYGDKGRYDEAKVDKDYSGKSRHGVSSKTEENSFKKGSARSVSKSQENKSSRASKSSANASAVPSQSASVPTEDDFDDFDPRGTSTKTSAGISNQVDLFGQDLLGDFMDAPTSVSVEKPATSDASEVDLFADASFVSAAPHADKGASSQPQDEVDLFSSQPIPSVTPTVDLFSIPAPAVQPDSKSENSVPVNNSTFDPFASVPLNNFEGSDVFGDFTSQSDSVSSQPSTNAATDGSTSGKSVADSNVPPKKDAFQVKSGIWADSLSRGLIDLNISAPKKVSLVDVGIVGGLSDGLDEREKGPPTTLYMGRAMGTGSGLGMYGGTPSQSTAGDDIFSNFGSQNYQFGGFQK