Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66720.t1 | XP_013455796.1 | 88.1 | 329 | 39 | 0 | 1 | 329 | 1 | 329 | 3.90E-152 | 547.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66720.t1 | Q9XIN8 | 40.5 | 309 | 171 | 4 | 25 | 326 | 16 | 318 | 1.3e-58 | 228.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66720.t1 | A0A072UJI1 | 88.1 | 329 | 39 | 0 | 1 | 329 | 1 | 329 | 2.8e-152 | 547.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055401 | MS.gene66720 | 0.803492 | 3.40E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66720.t1 | MTR_4g052460 | 92.082 | 341 | 27 | 0 | 1 | 341 | 1 | 341 | 0.0 | 596 |
| MS.gene66720.t1 | MTR_2g086920 | 51.506 | 332 | 143 | 6 | 19 | 347 | 3 | 319 | 1.59e-97 | 292 |
| MS.gene66720.t1 | MTR_7g105320 | 43.438 | 320 | 168 | 6 | 27 | 343 | 23 | 332 | 1.78e-68 | 218 |
| MS.gene66720.t1 | MTR_1g058490 | 40.690 | 290 | 163 | 4 | 13 | 302 | 8 | 288 | 2.34e-64 | 207 |
| MS.gene66720.t1 | MTR_3g466350 | 44.815 | 270 | 137 | 9 | 27 | 291 | 12 | 274 | 4.01e-63 | 203 |
| MS.gene66720.t1 | MTR_3g466280 | 39.146 | 281 | 139 | 10 | 17 | 291 | 2 | 256 | 3.79e-45 | 155 |
| MS.gene66720.t1 | MTR_8g021080 | 36.299 | 281 | 146 | 14 | 19 | 289 | 2 | 259 | 7.75e-42 | 147 |
| MS.gene66720.t1 | MTR_8g022730 | 36.268 | 284 | 144 | 9 | 27 | 291 | 10 | 275 | 7.75e-40 | 142 |
| MS.gene66720.t1 | MTR_3g466300 | 38.587 | 184 | 90 | 6 | 22 | 202 | 7 | 170 | 2.17e-30 | 116 |
| MS.gene66720.t1 | MTR_1g072360 | 25.946 | 370 | 222 | 11 | 19 | 341 | 7 | 371 | 9.10e-30 | 117 |
| MS.gene66720.t1 | MTR_1g072360 | 26.216 | 370 | 221 | 11 | 19 | 341 | 27 | 391 | 1.04e-29 | 118 |
| MS.gene66720.t1 | MTR_5g013660 | 30.263 | 304 | 171 | 12 | 24 | 290 | 7 | 306 | 4.06e-28 | 112 |
| MS.gene66720.t1 | MTR_3g466330 | 34.553 | 246 | 114 | 11 | 27 | 262 | 12 | 220 | 4.24e-27 | 107 |
| MS.gene66720.t1 | MTR_8g021090 | 52.326 | 86 | 34 | 3 | 44 | 127 | 4 | 84 | 3.63e-18 | 79.3 |
| MS.gene66720.t1 | MTR_1g060460 | 31.757 | 148 | 76 | 3 | 18 | 164 | 39 | 162 | 7.76e-13 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66720.t1 | AT2G27310 | 39.104 | 335 | 191 | 4 | 17 | 344 | 8 | 336 | 5.30e-79 | 246 |
| MS.gene66720.t1 | AT3G44326 | 39.181 | 342 | 196 | 5 | 14 | 348 | 14 | 350 | 2.96e-75 | 237 |
| MS.gene66720.t1 | AT2G36090 | 40.476 | 336 | 167 | 7 | 12 | 341 | 5 | 313 | 2.35e-68 | 218 |
Find 113 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGTGAAGAGGGAGAGATTA+AGG | 0.215549 | 4.3:+47521137 | MS.gene66720:CDS |
| AGAGATTCTTGGGGATGATT+AGG | 0.229501 | 4.3:+47521169 | MS.gene66720:CDS |
| GTCGTTACATATTGGAATTT+TGG | 0.261967 | 4.3:+47520714 | MS.gene66720:CDS |
| GGAGAGGTTTGAGAGATTCT+TGG | 0.298569 | 4.3:+47521158 | MS.gene66720:CDS |
| TTGATGAAGGCAATGGAGTT+TGG | 0.301638 | 4.3:+47521099 | MS.gene66720:CDS |
| GAGATTCTTGGGGATGATTA+GGG | 0.305754 | 4.3:+47521170 | MS.gene66720:CDS |
| GAGAGGTTTGAGAGATTCTT+GGG | 0.323355 | 4.3:+47521159 | MS.gene66720:CDS |
| ATGGAAGGAGGGGAGGTTAG+TGG | 0.343393 | 4.3:+47521057 | MS.gene66720:CDS |
| TCACATGTTGTGGGAAAGTT+GGG | 0.344634 | 4.3:+47520992 | MS.gene66720:CDS |
| CTCACGTCGTCGTTACATAT+TGG | 0.344973 | 4.3:+47520706 | MS.gene66720:CDS |
| AGAGGAGAGAGATGAAGTTT+AGG | 0.346170 | 4.3:+47521193 | MS.gene66720:CDS |
| CGAAGAATGGATGAAGCATT+TGG | 0.348270 | 4.3:+47520783 | MS.gene66720:CDS |
| TCTGCATGGACAATGATCTA+TGG | 0.357882 | 4.3:+47520425 | MS.gene66720:CDS |
| GGGTTTAGTGATGGAGGATA+TGG | 0.368384 | 4.3:+47521038 | MS.gene66720:CDS |
| AAACGGAACGGTGGCCATTT+GGG | 0.375591 | 4.3:-47520516 | None:intergenic |
| TACTAAAACCGGCTTCCGGC+TGG | 0.377691 | 4.3:-47520869 | None:intergenic |
| AGAGCAGGTGGAGGCGGTGG+TGG | 0.377816 | 4.3:-47520389 | None:intergenic |
| TTGCCTTTGTTGTTTGTGTT+TGG | 0.380953 | 4.3:+47521250 | MS.gene66720:CDS |
| GGGGAGGTTAGTGGGAAAGA+AGG | 0.385552 | 4.3:+47521066 | MS.gene66720:CDS |
| GGGAGGTTAGTGGGAAAGAA+GGG | 0.388191 | 4.3:+47521067 | MS.gene66720:CDS |
| AAAACGGAACGGTGGCCATT+TGG | 0.388811 | 4.3:-47520517 | None:intergenic |
| GAGCGTGGCGGCGTCGAGGC+GGG | 0.393992 | 4.3:-47520365 | None:intergenic |
| GTCACATGTTGTGGGAAAGT+TGG | 0.401924 | 4.3:+47520991 | MS.gene66720:CDS |
| GTGAGAGCAGGTGGAGGCGG+TGG | 0.407808 | 4.3:-47520392 | None:intergenic |
| GTCATTTCTACTTTCCCAAA+TGG | 0.423462 | 4.3:+47520502 | MS.gene66720:CDS |
| AGGAAGAAAGTTAGTGAAGA+GGG | 0.423494 | 4.3:+47521126 | MS.gene66720:CDS |
| GGCGTTGGAACCAACTCGTT+TGG | 0.426087 | 4.3:-47520739 | None:intergenic |
| TGATGAAGGCATCTTGCTTT+CGG | 0.428926 | 4.3:-47520278 | None:intergenic |
| GAAAAGAATCTCCACGTCTC+TGG | 0.437552 | 4.3:-47520908 | None:intergenic |
| GAACGTTTCCAGCCGGAAGC+CGG | 0.437715 | 4.3:+47520861 | MS.gene66720:CDS |
| AAGATCATTTATCTTTAAGC+TGG | 0.439116 | 4.3:+47520806 | MS.gene66720:CDS |
| TGTTTCCGTTTGCTGGACTC+TGG | 0.446343 | 4.3:-47520668 | None:intergenic |
| TGAATTGTACATGAGGGAGG+TGG | 0.452744 | 4.3:+47521017 | MS.gene66720:CDS |
| GGAGGTTAGTGGGAAAGAAG+GGG | 0.454643 | 4.3:+47521068 | MS.gene66720:CDS |
| GAGGTGAGAGCAGGTGGAGG+CGG | 0.475990 | 4.3:-47520395 | None:intergenic |
| ATAAATTCTTCTGGCGGAAG+AGG | 0.478738 | 4.3:-47520604 | None:intergenic |
| GAATTGTACATGAGGGAGGT+GGG | 0.479391 | 4.3:+47521018 | MS.gene66720:CDS |
| CAGTGTCGTCGTACTAAAAC+CGG | 0.479464 | 4.3:-47520880 | None:intergenic |
| ATGGCGGAGGTGAGAGCAGG+TGG | 0.483642 | 4.3:-47520401 | None:intergenic |
| TGGCGGCGTCGAGGCGGGTG+AGG | 0.491027 | 4.3:-47520360 | None:intergenic |
| TGATGGAGGATATGGAAGGA+GGG | 0.494047 | 4.3:+47521046 | MS.gene66720:CDS |
| GGCGGGTGAGGATGTGTGTA+TGG | 0.496272 | 4.3:-47520348 | None:intergenic |
| AACCGAGATGGTACAGTGTA+TGG | 0.498892 | 4.3:+47520963 | MS.gene66720:CDS |
| GGGAAATGCGTCTGAGAAAA+CGG | 0.499238 | 4.3:-47520533 | None:intergenic |
| GAGATGGCGGAGGTGAGAGC+AGG | 0.499962 | 4.3:-47520404 | None:intergenic |
| TTAGTGGGAAAGAAGGGGTT+GGG | 0.502371 | 4.3:+47521073 | MS.gene66720:CDS |
| CGAGCGTGGCGGCGTCGAGG+CGG | 0.505585 | 4.3:-47520366 | None:intergenic |
| AAACCAAACACAAACAACAA+AGG | 0.507178 | 4.3:-47521253 | None:intergenic |
| GAGGAAGAAAGTTAGTGAAG+AGG | 0.507557 | 4.3:+47521125 | MS.gene66720:CDS |
| AGGCAATGGAGTTTGGAGAG+AGG | 0.507885 | 4.3:+47521106 | MS.gene66720:CDS |
| GTCGTACTAAAACCGGCTTC+CGG | 0.507928 | 4.3:-47520873 | None:intergenic |
| AGAAGAGAAATGATGAAGAG+TGG | 0.509282 | 4.3:-47520554 | None:intergenic |
| TCTTGGGGATGATTAGGGAG+AGG | 0.511981 | 4.3:+47521175 | MS.gene66720:CDS |
| CTAACAAACTTAACCGGCGT+TGG | 0.512352 | 4.3:-47520754 | None:intergenic |
| CTTCCGGCTGGAAACGTTCG+CGG | 0.513928 | 4.3:-47520857 | None:intergenic |
| ACAGCGGAGATAAATTCTTC+TGG | 0.515488 | 4.3:-47520613 | None:intergenic |
| GGAGGCGGTGGTGGCGAGCG+TGG | 0.520762 | 4.3:-47520380 | None:intergenic |
| GATGGAGGATATGGAAGGAG+GGG | 0.527638 | 4.3:+47521047 | MS.gene66720:CDS |
| GCGGAGGTGAGAGCAGGTGG+AGG | 0.532248 | 4.3:-47520398 | None:intergenic |
| TGGAAGGAGGGGAGGTTAGT+GGG | 0.535058 | 4.3:+47521058 | MS.gene66720:CDS |
| GAAGAGAAATGATGAAGAGT+GGG | 0.540367 | 4.3:-47520553 | None:intergenic |
| AGGGGTTGGGATATTGATGA+AGG | 0.541560 | 4.3:+47521086 | MS.gene66720:CDS |
| GGAGGATATGGAAGGAGGGG+AGG | 0.549136 | 4.3:+47521050 | MS.gene66720:CDS |
| GTTAGTGGGAAAGAAGGGGT+TGG | 0.549347 | 4.3:+47521072 | MS.gene66720:CDS |
| GTGATGGAGGATATGGAAGG+AGG | 0.549456 | 4.3:+47521045 | MS.gene66720:CDS |
| AAGAGGGAGAGATTAAGGAG+AGG | 0.553582 | 4.3:+47521142 | MS.gene66720:CDS |
| TATACACTACAGAGGTAAGC+TGG | 0.554494 | 4.3:+47520639 | MS.gene66720:CDS |
| GAGGGAGGTGGGTTTAGTGA+TGG | 0.554808 | 4.3:+47521029 | MS.gene66720:CDS |
| TCACCTCCGCCATCTCTGCA+TGG | 0.557792 | 4.3:+47520411 | MS.gene66720:CDS |
| TGGATCATCATTGACCCGAC+TGG | 0.566361 | 4.3:+47520826 | MS.gene66720:CDS |
| ACGTGATGGTGTTTCTACCT+TGG | 0.568427 | 4.3:+47521227 | MS.gene66720:CDS |
| TGGCGAGCGTGGCGGCGTCG+AGG | 0.570464 | 4.3:-47520369 | None:intergenic |
| TAGTAACGAAGGCCACGTCT+CGG | 0.573617 | 4.3:-47520461 | None:intergenic |
| AGAGGTTTGAGAGATTCTTG+GGG | 0.575327 | 4.3:+47521160 | MS.gene66720:CDS |
| GGCGGTGGTGGCGAGCGTGG+CGG | 0.580799 | 4.3:-47520377 | None:intergenic |
| CACCATACACTGTACCATCT+CGG | 0.584019 | 4.3:-47520965 | None:intergenic |
| GGAGGTGGGTTTAGTGATGG+AGG | 0.590038 | 4.3:+47521032 | MS.gene66720:CDS |
| TGGGATATTGATGAAGGCAA+TGG | 0.590881 | 4.3:+47521092 | MS.gene66720:CDS |
| CACATGTTGTGGGAAAGTTG+GGG | 0.596822 | 4.3:+47520993 | MS.gene66720:CDS |
| TGTGTGTATGGAGGATATCA+TGG | 0.599190 | 4.3:-47520336 | None:intergenic |
| GTGGTGATGCTTGATGATGA+TGG | 0.600826 | 4.3:-47520307 | None:intergenic |
| GAAATGACATGGCTGGTGGT+AGG | 0.605597 | 4.3:-47520487 | None:intergenic |
| GTTCCGCGAACGTTTCCAGC+CGG | 0.606576 | 4.3:+47520854 | MS.gene66720:CDS |
| AAACGAGTTGGTTCCAACGC+CGG | 0.609716 | 4.3:+47520741 | MS.gene66720:CDS |
| GATGAAGTTTAGGAGACAGA+AGG | 0.610563 | 4.3:+47521203 | MS.gene66720:CDS |
| ACAAACAACAAAGGCAACCA+AGG | 0.610841 | 4.3:-47521244 | None:intergenic |
| GATGGTACAGTGTATGGTGA+AGG | 0.614829 | 4.3:+47520969 | MS.gene66720:CDS |
| ATGGTGAAGGTCACATGTTG+TGG | 0.617608 | 4.3:+47520982 | MS.gene66720:CDS |
| GATCATTGTCCATGCAGAGA+TGG | 0.620719 | 4.3:-47520420 | None:intergenic |
| CATTGTCCATGCAGAGATGG+CGG | 0.625871 | 4.3:-47520417 | None:intergenic |
| GATGATGGTGATGATGATGA+AGG | 0.626211 | 4.3:-47520292 | None:intergenic |
| GGGTGAGGATGTGTGTATGG+AGG | 0.626745 | 4.3:-47520345 | None:intergenic |
| GGGTGAATTGTACATGAGGG+AGG | 0.635710 | 4.3:+47521014 | MS.gene66720:CDS |
| TGTCCATGCAGAGATGGCGG+AGG | 0.639270 | 4.3:-47520414 | None:intergenic |
| TGGTGAAGGTCACATGTTGT+GGG | 0.639670 | 4.3:+47520983 | MS.gene66720:CDS |
| GAAAGTAGAAATGACATGGC+TGG | 0.639787 | 4.3:-47520494 | None:intergenic |
| AGAAGAATTTATCTCCGCTG+TGG | 0.653889 | 4.3:+47520615 | MS.gene66720:CDS |
| GACACGACGATCAACCGAGA+TGG | 0.655991 | 4.3:+47520951 | MS.gene66720:CDS |
| ACATGTTGTGGGAAAGTTGG+GGG | 0.659343 | 4.3:+47520994 | MS.gene66720:CDS |
| ATGGAGGATATCATGGTGCA+TGG | 0.661981 | 4.3:-47520329 | None:intergenic |
| AGTAGAAATGACATGGCTGG+TGG | 0.663306 | 4.3:-47520491 | None:intergenic |
| GTGGTAGGATCTAGTAACGA+AGG | 0.667403 | 4.3:-47520472 | None:intergenic |
| TTGGGAAAGTAGAAATGACA+TGG | 0.669313 | 4.3:-47520498 | None:intergenic |
| ACACTGGCTAACCAGAGACG+TGG | 0.669419 | 4.3:+47520897 | MS.gene66720:CDS |
| GCGGAGATAAATTCTTCTGG+CGG | 0.669469 | 4.3:-47520610 | None:intergenic |
| AGGAGACAGAAGGTACGTGA+TGG | 0.670571 | 4.3:+47521213 | MS.gene66720:CDS |
| TCTGGCGGAAGAGGTGACTG+AGG | 0.676437 | 4.3:-47520595 | None:intergenic |
| CGTCTGAGAAAACGGAACGG+TGG | 0.706736 | 4.3:-47520525 | None:intergenic |
| TTAGTGATGGAGGATATGGA+AGG | 0.707771 | 4.3:+47521042 | MS.gene66720:CDS |
| ATGCGTCTGAGAAAACGGAA+CGG | 0.751594 | 4.3:-47520528 | None:intergenic |
| GCTGTGGATATACACTACAG+AGG | 0.760040 | 4.3:+47520631 | MS.gene66720:CDS |
| GAGGATATCATGGTGCATGG+TGG | 0.775676 | 4.3:-47520326 | None:intergenic |
| TCTGTAGTGTATATCCACAG+CGG | 0.804391 | 4.3:-47520629 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTCTAACAAACTTAAC+CGG | - | chr4.3:47520763-47520782 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTGGTTTTGTGTT+TGG | + | chr4.3:47521288-47521307 | MS.gene66720:CDS | 20.0% |
| ! | AAGATCATTTATCTTTAAGC+TGG | + | chr4.3:47520806-47520825 | MS.gene66720:CDS | 25.0% |
| ! | TTGTTAGAAAAAACGAAGAA+TGG | + | chr4.3:47520770-47520789 | MS.gene66720:CDS | 25.0% |
| AAACCAAACACAAACAACAA+AGG | - | chr4.3:47521256-47521275 | None:intergenic | 30.0% | |
| ! | GTCGTTACATATTGGAATTT+TGG | + | chr4.3:47520714-47520733 | MS.gene66720:CDS | 30.0% |
| !!! | TTGTGTTTGGTTTTGTTACT+TGG | + | chr4.3:47521301-47521320 | MS.gene66720:CDS | 30.0% |
| AGAAGAGAAATGATGAAGAG+TGG | - | chr4.3:47520557-47520576 | None:intergenic | 35.0% | |
| AGGAAGAAAGTTAGTGAAGA+GGG | + | chr4.3:47521126-47521145 | MS.gene66720:CDS | 35.0% | |
| GAAGAGAAATGATGAAGAGT+GGG | - | chr4.3:47520556-47520575 | None:intergenic | 35.0% | |
| GTCATTTCTACTTTCCCAAA+TGG | + | chr4.3:47520502-47520521 | MS.gene66720:CDS | 35.0% | |
| TTGGGAAAGTAGAAATGACA+TGG | - | chr4.3:47520501-47520520 | None:intergenic | 35.0% | |
| !! | TTGCCTTTGTTGTTTGTGTT+TGG | + | chr4.3:47521250-47521269 | MS.gene66720:CDS | 35.0% |
| !!! | AATTTTGGAACCAAACGAGT+TGG | + | chr4.3:47520729-47520748 | MS.gene66720:CDS | 35.0% |
| !!! | TCTTTTTTGTTTCCGTTTGC+TGG | - | chr4.3:47520678-47520697 | None:intergenic | 35.0% |
| ACAAACAACAAAGGCAACCA+AGG | - | chr4.3:47521247-47521266 | None:intergenic | 40.0% | |
| ACAGCGGAGATAAATTCTTC+TGG | - | chr4.3:47520616-47520635 | None:intergenic | 40.0% | |
| AGAAGAATTTATCTCCGCTG+TGG | + | chr4.3:47520615-47520634 | MS.gene66720:CDS | 40.0% | |
| AGAGATTCTTGGGGATGATT+AGG | + | chr4.3:47521169-47521188 | MS.gene66720:CDS | 40.0% | |
| AGAGGAGAGAGATGAAGTTT+AGG | + | chr4.3:47521193-47521212 | MS.gene66720:CDS | 40.0% | |
| AGAGGTTTGAGAGATTCTTG+GGG | + | chr4.3:47521160-47521179 | MS.gene66720:CDS | 40.0% | |
| ATAAATTCTTCTGGCGGAAG+AGG | - | chr4.3:47520607-47520626 | None:intergenic | 40.0% | |
| GAAAGTAGAAATGACATGGC+TGG | - | chr4.3:47520497-47520516 | None:intergenic | 40.0% | |
| GAGAGGTTTGAGAGATTCTT+GGG | + | chr4.3:47521159-47521178 | MS.gene66720:CDS | 40.0% | |
| GAGATTCTTGGGGATGATTA+GGG | + | chr4.3:47521170-47521189 | MS.gene66720:CDS | 40.0% | |
| GAGGAAGAAAGTTAGTGAAG+AGG | + | chr4.3:47521125-47521144 | MS.gene66720:CDS | 40.0% | |
| GATGAAGTTTAGGAGACAGA+AGG | + | chr4.3:47521203-47521222 | MS.gene66720:CDS | 40.0% | |
| TAGTGAAGAGGGAGAGATTA+AGG | + | chr4.3:47521137-47521156 | MS.gene66720:CDS | 40.0% | |
| TATACACTACAGAGGTAAGC+TGG | + | chr4.3:47520639-47520658 | MS.gene66720:CDS | 40.0% | |
| TCACATGTTGTGGGAAAGTT+GGG | + | chr4.3:47520992-47521011 | MS.gene66720:CDS | 40.0% | |
| TCTGCATGGACAATGATCTA+TGG | + | chr4.3:47520425-47520444 | MS.gene66720:CDS | 40.0% | |
| TCTGTAGTGTATATCCACAG+CGG | - | chr4.3:47520632-47520651 | None:intergenic | 40.0% | |
| TGGGATATTGATGAAGGCAA+TGG | + | chr4.3:47521092-47521111 | MS.gene66720:CDS | 40.0% | |
| TGTGTGTATGGAGGATATCA+TGG | - | chr4.3:47520339-47520358 | None:intergenic | 40.0% | |
| TTGATGAAGGCAATGGAGTT+TGG | + | chr4.3:47521099-47521118 | MS.gene66720:CDS | 40.0% | |
| ! | CGAAGAATGGATGAAGCATT+TGG | + | chr4.3:47520783-47520802 | MS.gene66720:CDS | 40.0% |
| ! | GATGATGGTGATGATGATGA+AGG | - | chr4.3:47520295-47520314 | None:intergenic | 40.0% |
| ! | TTAGTGATGGAGGATATGGA+AGG | + | chr4.3:47521042-47521061 | MS.gene66720:CDS | 40.0% |
| !! | TGATGAAGGCATCTTGCTTT+CGG | - | chr4.3:47520281-47520300 | None:intergenic | 40.0% |
| !!! | GTTTGGTTTTGTTACTTGGC+TGG | + | chr4.3:47521305-47521324 | MS.gene66720:CDS | 40.0% |
| AAAAAATCTGCACCGAGACG+TGG | + | chr4.3:47520449-47520468 | MS.gene66720:CDS | 45.0% | |
| AACCGAGATGGTACAGTGTA+TGG | + | chr4.3:47520963-47520982 | MS.gene66720:CDS | 45.0% | |
| AAGAGGGAGAGATTAAGGAG+AGG | + | chr4.3:47521142-47521161 | MS.gene66720:CDS | 45.0% | |
| ACATGTTGTGGGAAAGTTGG+GGG | + | chr4.3:47520994-47521013 | MS.gene66720:CDS | 45.0% | |
| AGGGGTTGGGATATTGATGA+AGG | + | chr4.3:47521086-47521105 | MS.gene66720:CDS | 45.0% | |
| AGTAGAAATGACATGGCTGG+TGG | - | chr4.3:47520494-47520513 | None:intergenic | 45.0% | |
| ATGCGTCTGAGAAAACGGAA+CGG | - | chr4.3:47520531-47520550 | None:intergenic | 45.0% | |
| ATGGAGGATATCATGGTGCA+TGG | - | chr4.3:47520332-47520351 | None:intergenic | 45.0% | |
| ATGGTGAAGGTCACATGTTG+TGG | + | chr4.3:47520982-47521001 | MS.gene66720:CDS | 45.0% | |
| CACATGTTGTGGGAAAGTTG+GGG | + | chr4.3:47520993-47521012 | MS.gene66720:CDS | 45.0% | |
| CACCATACACTGTACCATCT+CGG | - | chr4.3:47520968-47520987 | None:intergenic | 45.0% | |
| CAGTGTCGTCGTACTAAAAC+CGG | - | chr4.3:47520883-47520902 | None:intergenic | 45.0% | |
| CTAACAAACTTAACCGGCGT+TGG | - | chr4.3:47520757-47520776 | None:intergenic | 45.0% | |
| CTCACGTCGTCGTTACATAT+TGG | + | chr4.3:47520706-47520725 | MS.gene66720:CDS | 45.0% | |
| GAAAAGAATCTCCACGTCTC+TGG | - | chr4.3:47520911-47520930 | None:intergenic | 45.0% | |
| GAATTGTACATGAGGGAGGT+GGG | + | chr4.3:47521018-47521037 | MS.gene66720:CDS | 45.0% | |
| GATCATTGTCCATGCAGAGA+TGG | - | chr4.3:47520423-47520442 | None:intergenic | 45.0% | |
| GATGGTACAGTGTATGGTGA+AGG | + | chr4.3:47520969-47520988 | MS.gene66720:CDS | 45.0% | |
| GCGGAGATAAATTCTTCTGG+CGG | - | chr4.3:47520613-47520632 | None:intergenic | 45.0% | |
| GCTGTGGATATACACTACAG+AGG | + | chr4.3:47520631-47520650 | MS.gene66720:CDS | 45.0% | |
| GGAGAGGTTTGAGAGATTCT+TGG | + | chr4.3:47521158-47521177 | MS.gene66720:CDS | 45.0% | |
| GGGAAATGCGTCTGAGAAAA+CGG | - | chr4.3:47520536-47520555 | None:intergenic | 45.0% | |
| GTCACATGTTGTGGGAAAGT+TGG | + | chr4.3:47520991-47521010 | MS.gene66720:CDS | 45.0% | |
| GTGGTAGGATCTAGTAACGA+AGG | - | chr4.3:47520475-47520494 | None:intergenic | 45.0% | |
| TGAATTGTACATGAGGGAGG+TGG | + | chr4.3:47521017-47521036 | MS.gene66720:CDS | 45.0% | |
| TGATGGAGGATATGGAAGGA+GGG | + | chr4.3:47521046-47521065 | MS.gene66720:CDS | 45.0% | |
| TGGGGGTGAATTGTACATGA+GGG | + | chr4.3:47521011-47521030 | MS.gene66720:CDS | 45.0% | |
| TGGTGAAGGTCACATGTTGT+GGG | + | chr4.3:47520983-47521002 | MS.gene66720:CDS | 45.0% | |
| TTAGTGGGAAAGAAGGGGTT+GGG | + | chr4.3:47521073-47521092 | MS.gene66720:CDS | 45.0% | |
| TTGGGGGTGAATTGTACATG+AGG | + | chr4.3:47521010-47521029 | MS.gene66720:CDS | 45.0% | |
| ! | ACGTGATGGTGTTTCTACCT+TGG | + | chr4.3:47521227-47521246 | MS.gene66720:CDS | 45.0% |
| ! | AGACGTGGAGATTCTTTTCG+CGG | + | chr4.3:47520912-47520931 | MS.gene66720:CDS | 45.0% |
| ! | GATTCTTTTCGCGGTGACAA+TGG | + | chr4.3:47520921-47520940 | MS.gene66720:CDS | 45.0% |
| ! | GGGTTTAGTGATGGAGGATA+TGG | + | chr4.3:47521038-47521057 | MS.gene66720:CDS | 45.0% |
| ! | GTTTTCCAGAGTCCAGCAAA+CGG | + | chr4.3:47520663-47520682 | MS.gene66720:CDS | 45.0% |
| !! | GTGGTGATGCTTGATGATGA+TGG | - | chr4.3:47520310-47520329 | None:intergenic | 45.0% |
| !!! | TGTTTTTTTTTTTTTTTTTT+TGG | + | chr4.3:47521276-47521295 | MS.gene66720:CDS | 5.0% |
| AAAACGGAACGGTGGCCATT+TGG | - | chr4.3:47520520-47520539 | None:intergenic | 50.0% | |
| AAACGGAACGGTGGCCATTT+GGG | - | chr4.3:47520519-47520538 | None:intergenic | 50.0% | |
| AGGCAATGGAGTTTGGAGAG+AGG | + | chr4.3:47521106-47521125 | MS.gene66720:CDS | 50.0% | |
| CATTGTCCATGCAGAGATGG+CGG | - | chr4.3:47520420-47520439 | None:intergenic | 50.0% | |
| GAAATGACATGGCTGGTGGT+AGG | - | chr4.3:47520490-47520509 | None:intergenic | 50.0% | |
| GAGGATATCATGGTGCATGG+TGG | - | chr4.3:47520329-47520348 | None:intergenic | 50.0% | |
| GATGGAGGATATGGAAGGAG+GGG | + | chr4.3:47521047-47521066 | MS.gene66720:CDS | 50.0% | |
| GGAGGTTAGTGGGAAAGAAG+GGG | + | chr4.3:47521068-47521087 | MS.gene66720:CDS | 50.0% | |
| GGGAGGTTAGTGGGAAAGAA+GGG | + | chr4.3:47521067-47521086 | MS.gene66720:CDS | 50.0% | |
| GGGTGAATTGTACATGAGGG+AGG | + | chr4.3:47521014-47521033 | MS.gene66720:CDS | 50.0% | |
| GTTAGTGGGAAAGAAGGGGT+TGG | + | chr4.3:47521072-47521091 | MS.gene66720:CDS | 50.0% | |
| TAGTAACGAAGGCCACGTCT+CGG | - | chr4.3:47520464-47520483 | None:intergenic | 50.0% | |
| TCTTGGGGATGATTAGGGAG+AGG | + | chr4.3:47521175-47521194 | MS.gene66720:CDS | 50.0% | |
| TGGATCATCATTGACCCGAC+TGG | + | chr4.3:47520826-47520845 | MS.gene66720:CDS | 50.0% | |
| ! | AGGAGACAGAAGGTACGTGA+TGG | + | chr4.3:47521213-47521232 | MS.gene66720:CDS | 50.0% |
| ! | GTCGTACTAAAACCGGCTTC+CGG | - | chr4.3:47520876-47520895 | None:intergenic | 50.0% |
| ! | GTGATGGAGGATATGGAAGG+AGG | + | chr4.3:47521045-47521064 | MS.gene66720:CDS | 50.0% |
| ! | TCTTTTCGCGGTGACAATGG+CGG | + | chr4.3:47520924-47520943 | MS.gene66720:CDS | 50.0% |
| ! | TGTTTCCGTTTGCTGGACTC+TGG | - | chr4.3:47520671-47520690 | None:intergenic | 50.0% |
| ! | TTCGCGGAACGTTTTCCAGT+CGG | - | chr4.3:47520844-47520863 | None:intergenic | 50.0% |
| !! | AAACGAGTTGGTTCCAACGC+CGG | + | chr4.3:47520741-47520760 | MS.gene66720:CDS | 50.0% |
| !! | CGGTTTTAGTACGACGACAC+TGG | + | chr4.3:47520881-47520900 | MS.gene66720:CDS | 50.0% |
| ATGGAAGGAGGGGAGGTTAG+TGG | + | chr4.3:47521057-47521076 | MS.gene66720:CDS | 55.0% | |
| CGTCTGAGAAAACGGAACGG+TGG | - | chr4.3:47520528-47520547 | None:intergenic | 55.0% | |
| GACACGACGATCAACCGAGA+TGG | + | chr4.3:47520951-47520970 | MS.gene66720:CDS | 55.0% | |
| GGGGAGGTTAGTGGGAAAGA+AGG | + | chr4.3:47521066-47521085 | MS.gene66720:CDS | 55.0% | |
| GGGTGAGGATGTGTGTATGG+AGG | - | chr4.3:47520348-47520367 | None:intergenic | 55.0% | |
| TGGAAGGAGGGGAGGTTAGT+GGG | + | chr4.3:47521058-47521077 | MS.gene66720:CDS | 55.0% | |
| ! | ACACTGGCTAACCAGAGACG+TGG | + | chr4.3:47520897-47520916 | MS.gene66720:CDS | 55.0% |
| ! | CTTTTCGCGGTGACAATGGC+GGG | + | chr4.3:47520925-47520944 | MS.gene66720:CDS | 55.0% |
| ! | GAGGGAGGTGGGTTTAGTGA+TGG | + | chr4.3:47521029-47521048 | MS.gene66720:CDS | 55.0% |
| ! | GGAGGTGGGTTTAGTGATGG+AGG | + | chr4.3:47521032-47521051 | MS.gene66720:CDS | 55.0% |
| ! | GGCGTTGGAACCAACTCGTT+TGG | - | chr4.3:47520742-47520761 | None:intergenic | 55.0% |
| ! | TACTAAAACCGGCTTCCGGC+TGG | - | chr4.3:47520872-47520891 | None:intergenic | 55.0% |
| ! | TCGCGGAACGTTTTCCAGTC+GGG | - | chr4.3:47520843-47520862 | None:intergenic | 55.0% |
| CTTCCGGCTGGAAACGTTCG+CGG | - | chr4.3:47520860-47520879 | None:intergenic | 60.0% | |
| GAACGTTTCCAGCCGGAAGC+CGG | + | chr4.3:47520861-47520880 | MS.gene66720:CDS | 60.0% | |
| GGAGGATATGGAAGGAGGGG+AGG | + | chr4.3:47521050-47521069 | MS.gene66720:CDS | 60.0% | |
| GGCGGGTGAGGATGTGTGTA+TGG | - | chr4.3:47520351-47520370 | None:intergenic | 60.0% | |
| GTTCCGCGAACGTTTCCAGC+CGG | + | chr4.3:47520854-47520873 | MS.gene66720:CDS | 60.0% | |
| TCACCTCCGCCATCTCTGCA+TGG | + | chr4.3:47520411-47520430 | MS.gene66720:CDS | 60.0% | |
| TCTGGCGGAAGAGGTGACTG+AGG | - | chr4.3:47520598-47520617 | None:intergenic | 60.0% | |
| ! | TGTCCATGCAGAGATGGCGG+AGG | - | chr4.3:47520417-47520436 | None:intergenic | 60.0% |
| GAGGTGAGAGCAGGTGGAGG+CGG | - | chr4.3:47520398-47520417 | None:intergenic | 65.0% | |
| ! | ATGGCGGAGGTGAGAGCAGG+TGG | - | chr4.3:47520404-47520423 | None:intergenic | 65.0% |
| !! | GAGATGGCGGAGGTGAGAGC+AGG | - | chr4.3:47520407-47520426 | None:intergenic | 65.0% |
| AGAGCAGGTGGAGGCGGTGG+TGG | - | chr4.3:47520392-47520411 | None:intergenic | 70.0% | |
| GCGGAGGTGAGAGCAGGTGG+AGG | - | chr4.3:47520401-47520420 | None:intergenic | 70.0% | |
| GTGAGAGCAGGTGGAGGCGG+TGG | - | chr4.3:47520395-47520414 | None:intergenic | 70.0% | |
| ! | TGGCGAGCGTGGCGGCGTCG+AGG | - | chr4.3:47520372-47520391 | None:intergenic | 80.0% |
| !! | CGAGCGTGGCGGCGTCGAGG+CGG | - | chr4.3:47520369-47520388 | None:intergenic | 80.0% |
| !! | GAGCGTGGCGGCGTCGAGGC+GGG | - | chr4.3:47520368-47520387 | None:intergenic | 80.0% |
| !! | GGAGGCGGTGGTGGCGAGCG+TGG | - | chr4.3:47520383-47520402 | None:intergenic | 80.0% |
| !! | GGCGGTGGTGGCGAGCGTGG+CGG | - | chr4.3:47520380-47520399 | None:intergenic | 80.0% |
| !! | TGGCGGCGTCGAGGCGGGTG+AGG | - | chr4.3:47520363-47520382 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 47520262 | 47521344 | 47520262 | ID=MS.gene66720 |
| chr4.3 | mRNA | 47520262 | 47521344 | 47520262 | ID=MS.gene66720.t1;Parent=MS.gene66720 |
| chr4.3 | exon | 47520262 | 47521344 | 47520262 | ID=MS.gene66720.t1.exon1;Parent=MS.gene66720.t1 |
| chr4.3 | CDS | 47520262 | 47521344 | 47520262 | ID=cds.MS.gene66720.t1;Parent=MS.gene66720.t1 |
| Gene Sequence |
| Protein sequence |
