Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66758.t1 | AES88313.2 | 98.4 | 127 | 2 | 0 | 1 | 127 | 3 | 129 | 4.10E-64 | 253.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66758.t1 | G7JIE4 | 98.4 | 127 | 2 | 0 | 1 | 127 | 3 | 129 | 3.0e-64 | 253.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene060122 | MS.gene66758 | 0.802768 | 4.80E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66758.t1 | MTR_4g053290 | 98.425 | 127 | 2 | 0 | 1 | 127 | 3 | 129 | 6.56e-92 | 261 |
| MS.gene66758.t1 | MTR_1g054455 | 38.043 | 92 | 57 | 0 | 8 | 99 | 30 | 121 | 2.95e-21 | 83.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66758.t1 | AT5G18250 | 69.600 | 125 | 34 | 1 | 4 | 124 | 7 | 131 | 1.08e-61 | 185 |
| MS.gene66758.t1 | AT3G04040 | 70.000 | 120 | 34 | 1 | 8 | 125 | 15 | 134 | 1.76e-59 | 180 |
| MS.gene66758.t1 | AT2G41945 | 36.957 | 92 | 58 | 0 | 8 | 99 | 30 | 121 | 2.77e-16 | 70.9 |
| MS.gene66758.t1 | AT2G41945 | 36.957 | 92 | 58 | 0 | 8 | 99 | 30 | 121 | 3.97e-16 | 70.5 |
| MS.gene66758.t1 | AT2G41945 | 34.568 | 81 | 53 | 0 | 8 | 88 | 30 | 110 | 1.33e-11 | 59.3 |
Find 26 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAATATTGCTCCCCTTATT+AGG | 0.141962 | 4.3:-46875638 | MS.gene66758:CDS |
| CTTCGCAGGAAACTAGTAAA+TGG | 0.304094 | 4.3:-46875659 | MS.gene66758:intron |
| GAATATTGCTCCCCTTATTA+GGG | 0.327230 | 4.3:-46875637 | MS.gene66758:CDS |
| TTTACATATCTATGGACAAT+TGG | 0.386180 | 4.3:+46874448 | None:intergenic |
| GGCACTACAAGTGCATTCTA+TGG | 0.399068 | 4.3:-46875387 | MS.gene66758:CDS |
| ATTGTCCATAGATATGTAAA+AGG | 0.428830 | 4.3:-46874445 | MS.gene66758:CDS |
| ACGGAGGAGAATACTATAAC+AGG | 0.435912 | 4.3:+46873136 | None:intergenic |
| TTGTAGATTGGTTCTGCTGT+TGG | 0.451825 | 4.3:-46875411 | MS.gene66758:intron |
| CTCCTCCGTATGTGCAGGAC+TGG | 0.490974 | 4.3:-46873122 | MS.gene66758:CDS |
| TCCGTATGTGCAGGACTGGC+AGG | 0.496468 | 4.3:-46873118 | MS.gene66758:intron |
| ACCTGCCAGTCCTGCACATA+CGG | 0.498913 | 4.3:+46873117 | None:intergenic |
| TAGATTGGTTCTGCTGTTGG+TGG | 0.512853 | 4.3:-46875408 | MS.gene66758:CDS |
| GCATTCTATGGATTCAATCA+TGG | 0.519596 | 4.3:-46875375 | MS.gene66758:intron |
| AGGTCCGCTTTCAAAAGAAA+TGG | 0.527238 | 4.3:-46875769 | MS.gene66758:intron |
| GTATTCTCCTCCGTATGTGC+AGG | 0.534075 | 4.3:-46873127 | MS.gene66758:CDS |
| AGATTATTCATATTAGAGAG+TGG | 0.538606 | 4.3:+46872617 | None:intergenic |
| GAAACAAGCTGTGCTAAAGC+AGG | 0.542395 | 4.3:+46872711 | None:intergenic |
| ATTCGATGCCATCACTGTGC+AGG | 0.545287 | 4.3:-46875789 | MS.gene66758:CDS |
| AAAGCGGACCTGCACAGTGA+TGG | 0.570698 | 4.3:+46875781 | None:intergenic |
| ACAGTCATCACCTCCTTCAG+AGG | 0.608977 | 4.3:-46872670 | MS.gene66758:CDS |
| ATATGTAAAAGGACCGATGT+GGG | 0.657764 | 4.3:-46874434 | MS.gene66758:CDS |
| GATATGTAAAAGGACCGATG+TGG | 0.681263 | 4.3:-46874435 | MS.gene66758:CDS |
| ACGAGAAAATGTACCCACAT+CGG | 0.682623 | 4.3:+46874421 | None:intergenic |
| GAGGAGAATACTATAACAGG+TGG | 0.695435 | 4.3:+46873139 | None:intergenic |
| TGCCAGTCCTGCACATACGG+AGG | 0.696167 | 4.3:+46873120 | None:intergenic |
| GAGGTGATGACTGTGATGCG+TGG | 0.717865 | 4.3:+46872679 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATGAAATTTATTTATGTA+TGG | - | chr4.3:46875069-46875088 | MS.gene66758:intron | 10.0% |
| !! | CATAAATAAATTTCATATAA+AGG | + | chr4.3:46875067-46875086 | None:intergenic | 10.0% |
| !!! | CAATAATTTTTTAATAAAAC+AGG | + | chr4.3:46874879-46874898 | None:intergenic | 10.0% |
| !!! | CTGTTTTATTAAAAAATTAT+TGG | - | chr4.3:46874877-46874896 | MS.gene66758:intron | 10.0% |
| !! | AATAAAATGATATATGTTAG+AGG | + | chr4.3:46874683-46874702 | None:intergenic | 15.0% |
| !! | AATAAATTTCATATAAAGGA+TGG | + | chr4.3:46875063-46875082 | None:intergenic | 15.0% |
| !! | TGATGAAATAAATGAAAAAA+AGG | + | chr4.3:46874071-46874090 | None:intergenic | 15.0% |
| !!! | ATTTGTTTGATTTTTTTATG+TGG | - | chr4.3:46872945-46872964 | MS.gene66758:intron | 15.0% |
| !!! | TTATAATATTAACTTTTCCA+TGG | - | chr4.3:46873580-46873599 | MS.gene66758:intron | 15.0% |
| !!! | TTGATTAATTTTTTGTAGAT+TGG | - | chr4.3:46873013-46873032 | MS.gene66758:intron | 15.0% |
| !!! | TTTGTTTGATTTTTTTATGT+GGG | - | chr4.3:46872946-46872965 | MS.gene66758:intron | 15.0% |
| !! | AAAATGTATAAATGAGCAAA+TGG | + | chr4.3:46874129-46874148 | None:intergenic | 20.0% |
| !! | ACAATCAAAACCTAAAAAAA+AGG | + | chr4.3:46872980-46872999 | None:intergenic | 20.0% |
| !! | AGTCTAACTAATAGTAATTA+TGG | + | chr4.3:46873743-46873762 | None:intergenic | 20.0% |
| !! | ATCATACAGAAGAATAAATT+TGG | + | chr4.3:46874950-46874969 | None:intergenic | 20.0% |
| !! | ATGAAAAAAACCAAAAAGTT+AGG | + | chr4.3:46872880-46872899 | None:intergenic | 20.0% |
| !! | ATGAATAATGATAGTATAAG+TGG | + | chr4.3:46873934-46873953 | None:intergenic | 20.0% |
| !! | TAATATAAAAGAGAAAGCAA+GGG | + | chr4.3:46874561-46874580 | None:intergenic | 20.0% |
| !! | TGAAATAAATGAAAAAAAGG+TGG | + | chr4.3:46874068-46874087 | None:intergenic | 20.0% |
| !! | TTAATATAAAAGAGAAAGCA+AGG | + | chr4.3:46874562-46874581 | None:intergenic | 20.0% |
| !! | TTTGACAAGAAATAAGAAAT+GGG | + | chr4.3:46872855-46872874 | None:intergenic | 20.0% |
| !!! | AAAAGCACAAATATTTTACA+AGG | + | chr4.3:46874907-46874926 | None:intergenic | 20.0% |
| !!! | AGGTTTTGATTGTTAATTAA+GGG | - | chr4.3:46872987-46873006 | MS.gene66758:intron | 20.0% |
| !!! | ATGTATAAGGTCTTTTTTAT+AGG | - | chr4.3:46873332-46873351 | MS.gene66758:intron | 20.0% |
| !!! | CTTCCTTTTTTTAAAAATCA+TGG | - | chr4.3:46874298-46874317 | MS.gene66758:intron | 20.0% |
| !!! | GATATATAATTTGTAGATAG+AGG | - | chr4.3:46873763-46873782 | MS.gene66758:intron | 20.0% |
| !!! | TAGGTTTTGATTGTTAATTA+AGG | - | chr4.3:46872986-46873005 | MS.gene66758:intron | 20.0% |
| !!! | TATAATTTGTAAGAGAATCA+TGG | - | chr4.3:46874641-46874660 | MS.gene66758:intron | 20.0% |
| !!! | TCTCCATGATTTTTAAAAAA+AGG | + | chr4.3:46874304-46874323 | None:intergenic | 20.0% |
| !!! | TGTATAAGGTCTTTTTTATA+GGG | - | chr4.3:46873333-46873352 | MS.gene66758:intron | 20.0% |
| !!! | TTATTTTTCTCCAAATCAAT+GGG | - | chr4.3:46874353-46874372 | MS.gene66758:intron | 20.0% |
| !!! | TTTTCATGTTTAATTGTTGT+GGG | - | chr4.3:46872893-46872912 | MS.gene66758:intron | 20.0% |
| !!! | TTTTGACAAGAAATAAGAAA+TGG | + | chr4.3:46872856-46872875 | None:intergenic | 20.0% |
| !!! | TTTTTCATGTTTAATTGTTG+TGG | - | chr4.3:46872892-46872911 | MS.gene66758:intron | 20.0% |
| ! | AAATCGTCACTAATATTTAC+AGG | + | chr4.3:46873417-46873436 | None:intergenic | 25.0% |
| ! | AACTTATTACAATACCAAGT+TGG | + | chr4.3:46875374-46875393 | None:intergenic | 25.0% |
| ! | AATGAAATCAAAAGAGGAAA+AGG | + | chr4.3:46872745-46872764 | None:intergenic | 25.0% |
| ! | ACAAATATGATTACGTAAGT+TGG | + | chr4.3:46874840-46874859 | None:intergenic | 25.0% |
| ! | AGAAAAACTATCCCTAATAA+GGG | + | chr4.3:46872813-46872832 | None:intergenic | 25.0% |
| ! | ATGAAATCAAAAGAGGAAAA+GGG | + | chr4.3:46872744-46872763 | None:intergenic | 25.0% |
| ! | ATTGTCCATAGATATGTAAA+AGG | - | chr4.3:46873991-46874010 | MS.gene66758:intron | 25.0% |
| ! | CTAATATTTACAGGCATATT+AGG | + | chr4.3:46873408-46873427 | None:intergenic | 25.0% |
| ! | GAAAAAGGAATACATATAGT+GGG | + | chr4.3:46874099-46874118 | None:intergenic | 25.0% |
| ! | GAGAATAATGAAATCAAAAG+AGG | + | chr4.3:46872751-46872770 | None:intergenic | 25.0% |
| ! | GCAAATGGATAAAATGAAAA+AGG | + | chr4.3:46874114-46874133 | None:intergenic | 25.0% |
| ! | GGCAAAATAGATCAATATTA+TGG | + | chr4.3:46873807-46873826 | None:intergenic | 25.0% |
| ! | TAAATTTGGAGACAATTCAT+TGG | + | chr4.3:46874936-46874955 | None:intergenic | 25.0% |
| ! | TAACGTTGCATAAATGTATA+AGG | - | chr4.3:46873319-46873338 | MS.gene66758:intron | 25.0% |
| ! | TAATCATATTTGTTTCCGTT+TGG | - | chr4.3:46874847-46874866 | MS.gene66758:intron | 25.0% |
| ! | TAGAAAAACTATCCCTAATA+AGG | + | chr4.3:46872814-46872833 | None:intergenic | 25.0% |
| ! | TATACATTTATGCAACGTTA+TGG | + | chr4.3:46873319-46873338 | None:intergenic | 25.0% |
| ! | TCAAGAAATCATTAAGTATG+AGG | + | chr4.3:46874152-46874171 | None:intergenic | 25.0% |
| ! | TCATACTTAATGATTTCTTG+AGG | - | chr4.3:46874151-46874170 | MS.gene66758:intron | 25.0% |
| ! | TGAAAAAAAGGTGGATAAAA+TGG | + | chr4.3:46874059-46874078 | None:intergenic | 25.0% |
| ! | TGAAAAAGGAATACATATAG+TGG | + | chr4.3:46874100-46874119 | None:intergenic | 25.0% |
| ! | TTGACAAGAAATAAGAAATG+GGG | + | chr4.3:46872854-46872873 | None:intergenic | 25.0% |
| ! | TTTACATATCTATGGACAAT+TGG | + | chr4.3:46873991-46874010 | None:intergenic | 25.0% |
| ! | TTTGTTTATATGGATATCTC+CGG | - | chr4.3:46875104-46875123 | MS.gene66758:intron | 25.0% |
| !! | AGAGTTTTCAATTAGTTAGA+TGG | + | chr4.3:46875263-46875282 | None:intergenic | 25.0% |
| !! | TATTAGGGATAGTTTTTCTA+TGG | - | chr4.3:46872814-46872833 | MS.gene66758:intron | 25.0% |
| !! | TCAAACTAAATGACGTTTTA+TGG | - | chr4.3:46873637-46873656 | MS.gene66758:intron | 25.0% |
| !! | TTGTCAAAATCCTAACTTTT+TGG | - | chr4.3:46872867-46872886 | MS.gene66758:intron | 25.0% |
| !!! | ATTACCATTTCTTTTGAAAG+CGG | + | chr4.3:46872674-46872693 | None:intergenic | 25.0% |
| !!! | CATCTTTAGTGTTTTTGAAA+AGG | + | chr4.3:46874808-46874827 | None:intergenic | 25.0% |
| !!! | CTTATTTTTCTCCAAATCAA+TGG | - | chr4.3:46874352-46874371 | MS.gene66758:intron | 25.0% |
| !!! | CTTTGAATTTTTTTTCCAAG+AGG | - | chr4.3:46874770-46874789 | MS.gene66758:intron | 25.0% |
| !!! | GGTTGTTTTTCCTTTTTTTT+AGG | - | chr4.3:46872967-46872986 | MS.gene66758:intron | 25.0% |
| !!! | GGTTTTGATTGTTAATTAAG+GGG | - | chr4.3:46872988-46873007 | MS.gene66758:intron | 25.0% |
| !!! | TTGATAACGTGAGAAATTTT+AGG | + | chr4.3:46875411-46875430 | None:intergenic | 25.0% |
| AAAACCATGCTGTAAAATAG+TGG | - | chr4.3:46873122-46873141 | MS.gene66758:CDS | 30.0% | |
| AAATCCATTGTTGTCAATCA+CGG | + | chr4.3:46875647-46875666 | None:intergenic | 30.0% | |
| AATCAGCTTACTGTTATCAT+AGG | + | chr4.3:46874609-46874628 | None:intergenic | 30.0% | |
| ACCCAATAAGAACTATTTCA+AGG | + | chr4.3:46874440-46874459 | None:intergenic | 30.0% | |
| AGTGGTAAAATGCAATTGAT+AGG | + | chr4.3:46874748-46874767 | None:intergenic | 30.0% | |
| ATAAAGGACAAAAAAAGCCT+AGG | - | chr4.3:46873673-46873692 | MS.gene66758:intron | 30.0% | |
| ATAGCAGCTATGTACTAAAT+TGG | + | chr4.3:46875566-46875585 | None:intergenic | 30.0% | |
| ATATAAACAAAACACGAACG+TGG | + | chr4.3:46875095-46875114 | None:intergenic | 30.0% | |
| ATCAGCTTACTGTTATCATA+GGG | + | chr4.3:46874608-46874627 | None:intergenic | 30.0% | |
| CAGTACAATATTGTAAACCA+TGG | + | chr4.3:46873600-46873619 | None:intergenic | 30.0% | |
| CATGGTTTACAATATTGTAC+TGG | - | chr4.3:46873598-46873617 | MS.gene66758:intron | 30.0% | |
| CCCAATAAGAACTATTTCAA+GGG | + | chr4.3:46874439-46874458 | None:intergenic | 30.0% | |
| CCCTTGAAATAGTTCTTATT+GGG | - | chr4.3:46874436-46874455 | MS.gene66758:CDS | 30.0% | |
| CTAACTAATTGAAAACTCTC+TGG | - | chr4.3:46875264-46875283 | MS.gene66758:intron | 30.0% | |
| CTTGGTAAATCTTTATCAGA+AGG | + | chr4.3:46875473-46875492 | None:intergenic | 30.0% | |
| GAAAAAAAATTCAAAGCCAG+TGG | + | chr4.3:46874766-46874785 | None:intergenic | 30.0% | |
| GAAAAACTATCCCTAATAAG+GGG | + | chr4.3:46872812-46872831 | None:intergenic | 30.0% | |
| GAAACTTCATACTTTCAGTT+TGG | + | chr4.3:46873903-46873922 | None:intergenic | 30.0% | |
| GTGATATTTCACTTACACTT+AGG | - | chr4.3:46873458-46873477 | MS.gene66758:intron | 30.0% | |
| GTGGTAAAATGCAATTGATA+GGG | + | chr4.3:46874747-46874766 | None:intergenic | 30.0% | |
| TAAAACAGGATTGATCCAAA+CGG | + | chr4.3:46874865-46874884 | None:intergenic | 30.0% | |
| TAATCTGATAAACATTGCCT+AGG | + | chr4.3:46873693-46873712 | None:intergenic | 30.0% | |
| TAGCAGCTATGTACTAAATT+GGG | + | chr4.3:46875565-46875584 | None:intergenic | 30.0% | |
| TATTTCACTTACACTTAGGT+TGG | - | chr4.3:46873462-46873481 | MS.gene66758:intron | 30.0% | |
| TCCCTTGAAATAGTTCTTAT+TGG | - | chr4.3:46874435-46874454 | MS.gene66758:CDS | 30.0% | |
| TTATGTATTGTGGTATCGTT+TGG | - | chr4.3:46875017-46875036 | MS.gene66758:intron | 30.0% | |
| TTATTCTCTTTAATCTTCGC+AGG | - | chr4.3:46872763-46872782 | MS.gene66758:intron | 30.0% | |
| ! | AATACCAAGTTGGCAAAATA+AGG | + | chr4.3:46875364-46875383 | None:intergenic | 30.0% |
| ! | AATATGATTACGTAAGTTGG+TGG | + | chr4.3:46874837-46874856 | None:intergenic | 30.0% |
| ! | CTGAAAGTATGAAGTTTCAT+TGG | - | chr4.3:46873905-46873924 | MS.gene66758:intron | 30.0% |
| ! | GTCTTTCTTTTCAAAAATGC+AGG | - | chr4.3:46875692-46875711 | MS.gene66758:intron | 30.0% |
| ! | TATCAATTGCATTTTACCAC+TGG | - | chr4.3:46874747-46874766 | MS.gene66758:intron | 30.0% |
| ! | TATGGTTTGTAGAATTGACA+AGG | + | chr4.3:46873725-46873744 | None:intergenic | 30.0% |
| ! | TTTCTTTTCAAAAATGCAGG+CGG | - | chr4.3:46875695-46875714 | MS.gene66758:intron | 30.0% |
| !!! | ACGTTCGTGTTTTGTTTATA+TGG | - | chr4.3:46875094-46875113 | MS.gene66758:intron | 30.0% |
| !!! | TTTTCCTTATTTTGCCAACT+TGG | - | chr4.3:46875357-46875376 | MS.gene66758:intron | 30.0% |
| ACAAGAAATAAGAAATGGGG+TGG | + | chr4.3:46872851-46872870 | None:intergenic | 35.0% | |
| ACTATGACAACGAGATGTTT+AGG | + | chr4.3:46874221-46874240 | None:intergenic | 35.0% | |
| AGGTGACTAAAATTTCCTCT+TGG | + | chr4.3:46874788-46874807 | None:intergenic | 35.0% | |
| ATATGTAAAAGGACCGATGT+GGG | - | chr4.3:46874002-46874021 | MS.gene66758:intron | 35.0% | |
| ATGTCCTAGACATGCAAAAA+TGG | + | chr4.3:46874469-46874488 | None:intergenic | 35.0% | |
| CATAGCAGAAATACTACTAG+GGG | - | chr4.3:46875202-46875221 | MS.gene66758:intron | 35.0% | |
| CATGATGATTTGAACTTGTG+TGG | - | chr4.3:46873501-46873520 | MS.gene66758:intron | 35.0% | |
| CATGTTTAATTGTTGTGGGT+TGG | - | chr4.3:46872897-46872916 | MS.gene66758:intron | 35.0% | |
| CTTATTTCAGCAAAACTTGC+TGG | - | chr4.3:46875230-46875249 | MS.gene66758:intron | 35.0% | |
| GAATATTGCTCCCCTTATTA+GGG | - | chr4.3:46872799-46872818 | MS.gene66758:intron | 35.0% | |
| GCATAGCAGAAATACTACTA+GGG | - | chr4.3:46875201-46875220 | MS.gene66758:intron | 35.0% | |
| GCATTCTATGGATTCAATCA+TGG | - | chr4.3:46873061-46873080 | MS.gene66758:intron | 35.0% | |
| GGTATATATTTGTCACTCAC+TGG | - | chr4.3:46874172-46874191 | MS.gene66758:intron | 35.0% | |
| TCAATTTCGGTGGGATAATT+TGG | - | chr4.3:46875143-46875162 | MS.gene66758:intron | 35.0% | |
| TCACACATTCATCACATGAA+TGG | + | chr4.3:46873828-46873847 | None:intergenic | 35.0% | |
| TCTAATTCTGTCATCAACTG+TGG | - | chr4.3:46872921-46872940 | MS.gene66758:intron | 35.0% | |
| TCTAGACAAACTGTTGTGTT+AGG | - | chr4.3:46873234-46873253 | MS.gene66758:intron | 35.0% | |
| TGCATACCTATAACTCTCTA+AGG | + | chr4.3:46874492-46874511 | None:intergenic | 35.0% | |
| TGGCTCAATGTGAATGATAA+AGG | - | chr4.3:46873657-46873676 | MS.gene66758:intron | 35.0% | |
| TGTACTGGATGTTAGACTAT+GGG | - | chr4.3:46873613-46873632 | MS.gene66758:intron | 35.0% | |
| TTGTACTGGATGTTAGACTA+TGG | - | chr4.3:46873612-46873631 | MS.gene66758:intron | 35.0% | |
| ! | ATCAACTTCTCCCATTGATT+TGG | + | chr4.3:46874366-46874385 | None:intergenic | 35.0% |
| ! | CATACTTTCAGTTTGGAACA+CGG | + | chr4.3:46873896-46873915 | None:intergenic | 35.0% |
| ! | GGACAAATGATTTCTTTTGC+AGG | + | chr4.3:46874418-46874437 | None:intergenic | 35.0% |
| ! | GTAGCAGAATTTTCACAAAC+CGG | - | chr4.3:46875524-46875543 | MS.gene66758:intron | 35.0% |
| ! | TACCAAGTGTTGTCAAATAC+TGG | - | chr4.3:46875486-46875505 | MS.gene66758:intron | 35.0% |
| ! | TATGGCTACTTTCGATATCA+CGG | + | chr4.3:46873789-46873808 | None:intergenic | 35.0% |
| ! | TCAAAAGAGGAAAAGGGTAT+TGG | + | chr4.3:46872738-46872757 | None:intergenic | 35.0% |
| ! | TCGGTCCTTTTACATATCTA+TGG | + | chr4.3:46873999-46874018 | None:intergenic | 35.0% |
| ! | TGAATCTTTTCATCCTCTGA+AGG | + | chr4.3:46875782-46875801 | None:intergenic | 35.0% |
| ! | TTCTTTTCAAAAATGCAGGC+GGG | - | chr4.3:46875696-46875715 | MS.gene66758:intron | 35.0% |
| !! | TGAACCATTTTTGCATGTCT+AGG | - | chr4.3:46874462-46874481 | MS.gene66758:intron | 35.0% |
| !!! | AGATATTTTTAGCCTGTGTC+TGG | - | chr4.3:46874321-46874340 | MS.gene66758:intron | 35.0% |
| AAAGGTGGATAAAATGGCTC+AGG | + | chr4.3:46874053-46874072 | None:intergenic | 40.0% | |
| ACGAGAAAATGTACCCACAT+CGG | + | chr4.3:46874018-46874037 | None:intergenic | 40.0% | |
| ACGGAGGAGAATACTATAAC+AGG | + | chr4.3:46875303-46875322 | None:intergenic | 40.0% | |
| AGCCAGTATTTGACAACACT+TGG | + | chr4.3:46875491-46875510 | None:intergenic | 40.0% | |
| AGGTCCGCTTTCAAAAGAAA+TGG | - | chr4.3:46872667-46872686 | MS.gene66758:CDS | 40.0% | |
| CGCATAGCAGAAATACTACT+AGG | - | chr4.3:46875200-46875219 | MS.gene66758:intron | 40.0% | |
| CTCAAACATTCGATTCCTCT+GGG | - | chr4.3:46873189-46873208 | MS.gene66758:intron | 40.0% | |
| CTTCGCAGGAAACTAGTAAA+TGG | - | chr4.3:46872777-46872796 | MS.gene66758:intron | 40.0% | |
| GACTGCTCTCTCAATATCAT+TGG | + | chr4.3:46874523-46874542 | None:intergenic | 40.0% | |
| GAGGAGAATACTATAACAGG+TGG | + | chr4.3:46875300-46875319 | None:intergenic | 40.0% | |
| GATATGTAAAAGGACCGATG+TGG | - | chr4.3:46874001-46874020 | MS.gene66758:intron | 40.0% | |
| GATTCTCTCCGTGTCAATTT+CGG | - | chr4.3:46875130-46875149 | MS.gene66758:intron | 40.0% | |
| GCTGCAGTCATTATGTATTG+TGG | - | chr4.3:46875007-46875026 | MS.gene66758:intron | 40.0% | |
| GGAATATTGCTCCCCTTATT+AGG | - | chr4.3:46872798-46872817 | MS.gene66758:intron | 40.0% | |
| GGACATCCTTAGAGAGTTAT+AGG | - | chr4.3:46874483-46874502 | MS.gene66758:intron | 40.0% | |
| GTGTGTATGCAGAATTCATG+AGG | + | chr4.3:46874708-46874727 | None:intergenic | 40.0% | |
| TGATCCGTGATTGACAACAA+TGG | - | chr4.3:46875640-46875659 | MS.gene66758:CDS | 40.0% | |
| TTATCCCACCGAAATTGACA+CGG | + | chr4.3:46875141-46875160 | None:intergenic | 40.0% | |
| ! | ACTGCCACTATTTTACAGCA+TGG | + | chr4.3:46873129-46873148 | None:intergenic | 40.0% |
| ! | ATGTGGGTACATTTTCTCGT+TGG | - | chr4.3:46874018-46874037 | MS.gene66758:intron | 40.0% |
| ! | TCTTTTCAAAAATGCAGGCG+GGG | - | chr4.3:46875697-46875716 | MS.gene66758:intron | 40.0% |
| ! | TGGGTATTGCAGAACAATAC+CGG | + | chr4.3:46875546-46875565 | None:intergenic | 40.0% |
| !! | ATCTTTTCATCCTCTGAAGG+AGG | + | chr4.3:46875779-46875798 | None:intergenic | 40.0% |
| !! | TTGTAGATTGGTTCTGCTGT+TGG | - | chr4.3:46873025-46873044 | MS.gene66758:intron | 40.0% |
| AGAGTGATGAAGTTGCGAAG+TGG | + | chr4.3:46872700-46872719 | None:intergenic | 45.0% | |
| AGTTTGTCTAGACCCAACCT+AGG | + | chr4.3:46873226-46873245 | None:intergenic | 45.0% | |
| CCAGAGGAATCGAATGTTTG+AGG | + | chr4.3:46873191-46873210 | None:intergenic | 45.0% | |
| CCTCAAACATTCGATTCCTC+TGG | - | chr4.3:46873188-46873207 | MS.gene66758:intron | 45.0% | |
| GAAACAAGCTGTGCTAAAGC+AGG | + | chr4.3:46875728-46875747 | None:intergenic | 45.0% | |
| GAGTGATGAAGTTGCGAAGT+GGG | + | chr4.3:46872699-46872718 | None:intergenic | 45.0% | |
| GCGCTAACAATTCCTAGGTT+GGG | - | chr4.3:46873211-46873230 | MS.gene66758:intron | 45.0% | |
| GGCACTACAAGTGCATTCTA+TGG | - | chr4.3:46873049-46873068 | MS.gene66758:intron | 45.0% | |
| !! | AAGAGAAAGCAAGGGTGTCT+AGG | + | chr4.3:46874553-46874572 | None:intergenic | 45.0% |
| !! | TAAGAAGAGTGTCCAGACAC+AGG | + | chr4.3:46874336-46874355 | None:intergenic | 45.0% |
| !! | TAGATTGGTTCTGCTGTTGG+TGG | - | chr4.3:46873028-46873047 | MS.gene66758:intron | 45.0% |
| ACAACCAAACCAACCCTGGA+GGG | + | chr4.3:46873156-46873175 | None:intergenic | 50.0% | |
| ACAGTCATCACCTCCTTCAG+AGG | - | chr4.3:46875766-46875785 | MS.gene66758:intron | 50.0% | |
| ATTCGATGCCATCACTGTGC+AGG | - | chr4.3:46872647-46872666 | MS.gene66758:CDS | 50.0% | |
| CTACACAACCAAACCAACCC+TGG | + | chr4.3:46873160-46873179 | None:intergenic | 50.0% | |
| CTCTCCGTGTCAATTTCGGT+GGG | - | chr4.3:46875134-46875153 | MS.gene66758:intron | 50.0% | |
| GAGAGCAGTGTTGTCAATCG+TGG | + | chr4.3:46873264-46873283 | None:intergenic | 50.0% | |
| GGCGCTAACAATTCCTAGGT+TGG | - | chr4.3:46873210-46873229 | MS.gene66758:intron | 50.0% | |
| GTATTCTCCTCCGTATGTGC+AGG | - | chr4.3:46875309-46875328 | MS.gene66758:intron | 50.0% | |
| TAGGAATTGTTAGCGCCCAG+AGG | + | chr4.3:46873207-46873226 | None:intergenic | 50.0% | |
| TCTCTCCGTGTCAATTTCGG+TGG | - | chr4.3:46875133-46875152 | MS.gene66758:intron | 50.0% | |
| TCTGGGCGCTAACAATTCCT+AGG | - | chr4.3:46873206-46873225 | MS.gene66758:intron | 50.0% | |
| TGACACGGAGAGAATCGATC+CGG | + | chr4.3:46875126-46875145 | None:intergenic | 50.0% | |
| !! | CAGGGTTGGTTTGGTTGTGT+AGG | - | chr4.3:46873158-46873177 | MS.gene66758:intron | 50.0% |
| AAAGCGGACCTGCACAGTGA+TGG | + | chr4.3:46872658-46872677 | None:intergenic | 55.0% | |
| ACCTGCCAGTCCTGCACATA+CGG | + | chr4.3:46875322-46875341 | None:intergenic | 55.0% | |
| AGTGGCAGTAGAACCCTCCA+GGG | - | chr4.3:46873140-46873159 | MS.gene66758:CDS | 55.0% | |
| CACAACCAAACCAACCCTGG+AGG | + | chr4.3:46873157-46873176 | None:intergenic | 55.0% | |
| GAGGTGATGACTGTGATGCG+TGG | + | chr4.3:46875760-46875779 | None:intergenic | 55.0% | |
| TAGTGGCAGTAGAACCCTCC+AGG | - | chr4.3:46873139-46873158 | MS.gene66758:CDS | 55.0% | |
| !! | AGAACCCTCCAGGGTTGGTT+TGG | - | chr4.3:46873149-46873168 | MS.gene66758:intron | 55.0% |
| CTCCTCCGTATGTGCAGGAC+TGG | - | chr4.3:46875314-46875333 | MS.gene66758:intron | 60.0% | |
| GCAGTAGAACCCTCCAGGGT+TGG | - | chr4.3:46873144-46873163 | MS.gene66758:CDS | 60.0% | |
| TGCCAGTCCTGCACATACGG+AGG | + | chr4.3:46875319-46875338 | None:intergenic | 60.0% | |
| ! | TCCGTATGTGCAGGACTGGC+AGG | - | chr4.3:46875318-46875337 | MS.gene66758:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 46872629 | 46875829 | 46872629 | ID=MS.gene66758 |
| chr4.3 | mRNA | 46872629 | 46875829 | 46872629 | ID=MS.gene66758.t1;Parent=MS.gene66758 |
| chr4.3 | exon | 46875770 | 46875829 | 46875770 | ID=MS.gene66758.t1.exon1;Parent=MS.gene66758.t1 |
| chr4.3 | CDS | 46875770 | 46875829 | 46875770 | ID=cds.MS.gene66758.t1;Parent=MS.gene66758.t1 |
| chr4.3 | exon | 46875623 | 46875673 | 46875623 | ID=MS.gene66758.t1.exon2;Parent=MS.gene66758.t1 |
| chr4.3 | CDS | 46875623 | 46875673 | 46875623 | ID=cds.MS.gene66758.t1;Parent=MS.gene66758.t1 |
| chr4.3 | exon | 46875376 | 46875427 | 46875376 | ID=MS.gene66758.t1.exon3;Parent=MS.gene66758.t1 |
| chr4.3 | CDS | 46875376 | 46875427 | 46875376 | ID=cds.MS.gene66758.t1;Parent=MS.gene66758.t1 |
| chr4.3 | exon | 46874417 | 46874475 | 46874417 | ID=MS.gene66758.t1.exon4;Parent=MS.gene66758.t1 |
| chr4.3 | CDS | 46874417 | 46874475 | 46874417 | ID=cds.MS.gene66758.t1;Parent=MS.gene66758.t1 |
| chr4.3 | exon | 46873119 | 46873164 | 46873119 | ID=MS.gene66758.t1.exon5;Parent=MS.gene66758.t1 |
| chr4.3 | CDS | 46873119 | 46873164 | 46873119 | ID=cds.MS.gene66758.t1;Parent=MS.gene66758.t1 |
| chr4.3 | exon | 46872629 | 46872744 | 46872629 | ID=MS.gene66758.t1.exon6;Parent=MS.gene66758.t1 |
| chr4.3 | CDS | 46872629 | 46872744 | 46872629 | ID=cds.MS.gene66758.t1;Parent=MS.gene66758.t1 |
| Gene Sequence |
| Protein sequence |
