AlfalfaGEDB | MS.gene060122

M. sativa cultivar XinJiangDaYe / MS.gene060122

KEGG: K03263
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0005488 GO:0006414 GO:0006417 GO:0006448 GO:0006449 GO:0006452 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0034248 GO:0034250 GO:0034645 GO:0043021 GO:0043022 GO:0043170 GO:0043243 GO:0043244 GO:0044237 GO:0044249 GO:0044260 GO:0044877 GO:0045182 GO:0045727 GO:0045901 GO:0045905 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090079 GO:0097159 GO:1901363 GO:1901576 GO:2000112
PFAM: PF01287.23

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060122.t1	XP_013458592.1	100	159	0	0	1	159	1	159	8.20E-86	326.2

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060122.t1	Q945F4	100.0	159	0	0	1	159	1	159	2.0e-88	326.2

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060122.t1	B7FGR9	100.0	159	0	0	1	159	1	159	5.9e-86	326.2

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050657	MS.gene060122	-0.811171	8.00E-51	-1.69E-46
MS.gene050759	MS.gene060122	-0.801407	9.14E-49	-1.69E-46
MS.gene051190	MS.gene060122	-0.805151	1.53E-49	-1.69E-46
MS.gene052463	MS.gene060122	-0.828376	9.30E-55	-1.69E-46
MS.gene052673	MS.gene060122	0.809254	2.07E-50	-1.69E-46
MS.gene05423	MS.gene060122	-0.802428	5.64E-49	-1.69E-46
MS.gene054291	MS.gene060122	0.808278	3.35E-50	-1.69E-46
MS.gene054468	MS.gene060122	-0.80464	1.96E-49	-1.69E-46
MS.gene060122	MS.gene060125	0.992272	2.65E-192	-1.69E-46
MS.gene060122	MS.gene060373	-0.809472	1.86E-50	-1.69E-46
MS.gene060122	MS.gene06052	-0.827986	1.16E-54	-1.69E-46
MS.gene060122	MS.gene060932	-0.804773	1.84E-49	-1.69E-46
MS.gene060122	MS.gene065119	0.819643	1.04E-52	-1.69E-46
MS.gene060122	MS.gene065908	-0.831163	1.95E-55	-1.69E-46
MS.gene060122	MS.gene066127	0.810633	1.05E-50	-1.69E-46
MS.gene060122	MS.gene067307	-0.811655	6.28E-51	-1.69E-46
MS.gene060122	MS.gene068014	0.820767	5.76E-53	-1.69E-46
MS.gene060122	MS.gene069868	0.819112	1.38E-52	-1.69E-46
MS.gene060122	MS.gene070088	0.805292	1.43E-49	-1.69E-46
MS.gene060122	MS.gene071700	-0.801971	7.00E-49	-1.69E-46
MS.gene060122	MS.gene072397	0.815884	7.35E-52	-1.69E-46
MS.gene060122	MS.gene072632	-0.804729	1.88E-49	-1.69E-46
MS.gene060122	MS.gene08184	-0.819515	1.12E-52	-1.69E-46
MS.gene060122	MS.gene20558	-0.800566	1.36E-48	-1.69E-46
MS.gene060122	MS.gene22419	-0.819532	1.11E-52	-1.69E-46
MS.gene060122	MS.gene22707	-0.813531	2.44E-51	-1.69E-46
MS.gene060122	MS.gene22769	0.822002	2.99E-53	-1.69E-46
MS.gene060122	MS.gene24229	-0.874892	4.73E-68	-1.69E-46
MS.gene060122	MS.gene27006	-0.882442	1.04E-70	-1.69E-46
MS.gene060122	MS.gene27269	-0.87303	2.02E-67	-1.69E-46
MS.gene060122	MS.gene28536	-0.810881	9.24E-51	-1.69E-46
MS.gene060122	MS.gene29361	-0.802188	6.31E-49	-1.69E-46
MS.gene060122	MS.gene33177	-0.816122	6.51E-52	-1.69E-46
MS.gene060122	MS.gene34440	-0.831215	1.89E-55	-1.69E-46
MS.gene060122	MS.gene34453	-0.800458	1.43E-48	-1.69E-46
MS.gene060122	MS.gene35129	0.821826	3.28E-53	-1.69E-46
MS.gene060122	MS.gene36543	0.818852	1.58E-52	-1.69E-46
MS.gene060122	MS.gene36993	0.828322	9.59E-55	-1.69E-46
MS.gene060122	MS.gene37086	-0.807763	4.31E-50	-1.69E-46
MS.gene060122	MS.gene37917	-0.847756	9.46E-60	-1.69E-46
MS.gene060122	MS.gene40871	-0.809711	1.65E-50	-1.69E-46
MS.gene060122	MS.gene40872	-0.826762	2.27E-54	-1.69E-46
MS.gene060122	MS.gene41380	-0.862651	4.36E-64	-1.69E-46
MS.gene060122	MS.gene41395	-0.813818	2.11E-51	-1.69E-46
MS.gene060122	MS.gene41729	-0.807896	4.04E-50	-1.69E-46
MS.gene060122	MS.gene44795	-0.801032	1.09E-48	-1.69E-46
MS.gene060122	MS.gene44907	-0.80058	1.35E-48	-1.69E-46
MS.gene060122	MS.gene44967	-0.80418	2.45E-49	-1.69E-46
MS.gene060122	MS.gene45128	0.824451	8.02E-54	-1.69E-46
MS.gene060122	MS.gene45281	-0.8136	2.36E-51	-1.69E-46
MS.gene060122	MS.gene48727	-0.804633	1.97E-49	-1.69E-46
MS.gene060122	MS.gene49467	-0.802477	5.51E-49	-1.69E-46
MS.gene060122	MS.gene50824	0.806877	6.64E-50	-1.69E-46
MS.gene060122	MS.gene55767	0.811341	7.35E-51	-1.69E-46
MS.gene060122	MS.gene55778	-0.835803	1.36E-56	-1.69E-46
MS.gene060122	MS.gene56294	0.815143	1.08E-51	-1.69E-46
MS.gene060122	MS.gene58049	-0.805458	1.32E-49	-1.69E-46
MS.gene060122	MS.gene58462	0.822522	2.26E-53	-1.69E-46
MS.gene060122	MS.gene58486	0.800132	1.66E-48	-1.69E-46
MS.gene060122	MS.gene58547	-0.810361	1.20E-50	-1.69E-46
MS.gene060122	MS.gene58608	0.820899	5.37E-53	-1.69E-46
MS.gene060122	MS.gene62687	0.800856	1.18E-48	-1.69E-46
MS.gene060122	MS.gene66758	0.802768	4.80E-49	-1.69E-46
MS.gene060122	MS.gene69007	-0.819878	9.22E-53	-1.69E-46
MS.gene060122	MS.gene73038	-0.81893	1.52E-52	-1.69E-46
MS.gene060122	MS.gene73332	-0.804821	1.80E-49	-1.69E-46
MS.gene060122	MS.gene76533	0.81644	5.52E-52	-1.69E-46
MS.gene060122	MS.gene78230	-0.813804	2.13E-51	-1.69E-46
MS.gene060122	MS.gene80205	-0.800782	1.23E-48	-1.69E-46
MS.gene060122	MS.gene81123	0.807312	5.37E-50	-1.69E-46
MS.gene060122	MS.gene85149	0.81389	2.04E-51	-1.69E-46
MS.gene060122	MS.gene86140	-0.816972	4.20E-52	-1.69E-46
MS.gene060122	MS.gene87358	-0.825209	5.31E-54	-1.69E-46
MS.gene060122	MS.gene88237	0.80487	1.76E-49	-1.69E-46
MS.gene060122	MS.gene88254	-0.816686	4.87E-52	-1.69E-46
MS.gene060122	MS.gene90231	0.835949	1.25E-56	-1.69E-46
MS.gene060122	MS.gene90727	-0.869821	2.32E-66	-1.69E-46
MS.gene060122	MS.gene92355	-0.802714	4.92E-49	-1.69E-46
MS.gene060122	MS.gene96598	-0.824091	9.74E-54	-1.69E-46
MS.gene060122	MS.gene99859	-0.805507	1.29E-49	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060122.t1	MTR_4g130917	100.000	159	0	0	1	159	1	159	6.42e-117	327
MS.gene060122.t1	MTR_4g109130	93.711	159	10	0	1	159	1	159	3.42e-109	308
MS.gene060122.t1	MTR_3g437680	92.453	159	12	0	1	159	1	159	1.80e-108	306
MS.gene060122.t1	MTR_3g437680	92.453	159	12	0	1	159	1	159	1.80e-108	306
MS.gene060122.t1	MTR_5g042990	89.937	159	16	0	1	159	1	159	2.22e-106	300
MS.gene060122.t1	MTR_4g130917	99.213	127	1	0	1	127	1	127	4.30e-92	264
MS.gene060122.t1	MTR_5g042990	89.764	127	13	0	1	127	1	127	2.04e-83	242
MS.gene060122.t1	MTR_5g042990	84.058	138	22	0	1	138	1	138	3.82e-83	241
MS.gene060122.t1	MTR_4g109130	85.000	120	18	0	1	120	1	120	3.54e-70	207
MS.gene060122.t1	MTR_4g112440	68.627	102	22	1	1	102	1	92	4.02e-45	143
MS.gene060122.t1	MTR_4g130907	47.656	128	19	2	18	145	42	121	1.35e-26	98.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060122.t1	AT1G13950	91.824	159	12	1	1	159	1	158	4.11e-105	297
MS.gene060122.t1	AT1G69410	86.792	159	20	1	1	159	1	158	8.89e-102	289
MS.gene060122.t1	AT1G26630	81.529	157	28	1	1	157	1	156	1.36e-93	268
MS.gene060122.t1	AT1G26630	84.252	127	19	1	1	127	1	126	6.66e-76	223

Find 32 sgRNAs with CRISPR-Local

Find 124 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AGCCTGTTGAGGGTAGGTTT+TGG	0.330390	8.4:-3014528	None:intergenic
AGGAAGCTTCAGATCATCTT+TGG	0.330486	8.4:-3016504	None:intergenic
ACTTAGGACCAATGTCCTTC+AGG	0.343359	8.4:-3016714	None:intergenic
TTGATTGATATTTCTGAAGA+TGG	0.371340	8.4:+3015632	MS.gene060122:CDS
GCAGAAAACCTTGCAAGGCC+TGG	0.423629	8.4:-3014588	None:intergenic
ATCCAAAACCTACCCTCAAC+AGG	0.440341	8.4:+3014526	MS.gene060122:CDS
ATACATTCATAGATTAAAGA+TGG	0.442913	8.4:+3016625	MS.gene060122:intron
GGATGCTCCGGCATCGGCAG+CGG	0.446886	8.4:-3014507	None:intergenic
GATGCTCCGGCATCGGCAGC+GGG	0.447940	8.4:-3014506	None:intergenic
TTTGAACCCGCTGCCGATGC+CGG	0.456716	8.4:+3014500	MS.gene060122:CDS
CTTAGGACCAATGTCCTTCA+GGG	0.484561	8.4:-3016713	None:intergenic
ATTAAAGATGGATTTGCTGA+TGG	0.488295	8.4:+3016637	MS.gene060122:CDS
GAATAGTACCAGCCTGTTGA+GGG	0.502881	8.4:-3014538	None:intergenic
GGTTTCTGTTATGTCTGCGA+TGG	0.503255	8.4:+3016672	MS.gene060122:CDS
ACATCACAATTGTGGGATGA+AGG	0.511953	8.4:-3015502	None:intergenic
CTAACTTACATCACAATTGT+GGG	0.513530	8.4:-3015509	None:intergenic
TCTAACTTACATCACAATTG+TGG	0.519354	8.4:-3015510	None:intergenic
CATCAAGTCCAGGCCTTGCA+AGG	0.525229	8.4:+3014580	MS.gene060122:CDS
GCTGGTACTATTCGCAAGAA+TGG	0.527051	8.4:+3014548	MS.gene060122:CDS
CGAATAGTACCAGCCTGTTG+AGG	0.540601	8.4:-3014539	None:intergenic
GTTTCTGTTATGTCTGCGAT+GGG	0.555762	8.4:+3016673	MS.gene060122:CDS
AAAACCTACCCTCAACAGGC+TGG	0.584266	8.4:+3014530	MS.gene060122:CDS
AGAGCAGATATGTGCCCTGA+AGG	0.589389	8.4:+3016699	MS.gene060122:CDS
TGCTGATGGAAAAGATCTCG+TGG	0.593109	8.4:+3016651	MS.gene060122:CDS
GAAAAGCAGAAAACCTTGCA+AGG	0.593565	8.4:-3014593	None:intergenic
ATATGTGCCCTGAAGGACAT+TGG	0.593679	8.4:+3016706	MS.gene060122:CDS
GTTACATAGTCATCAAGTCC+AGG	0.598114	8.4:+3014570	MS.gene060122:CDS
TGATGATTCACTACTTACTC+AGG	0.602143	8.4:+3016529	MS.gene060122:CDS
GTAAGTAGTGAATCATCAGT+AGG	0.605999	8.4:-3016524	None:intergenic
AGTACCAGCCTGTTGAGGGT+AGG	0.611010	8.4:-3014534	None:intergenic
GTGAGTTTGTTGACTGACAA+TGG	0.614472	8.4:+3016476	MS.gene060122:CDS
TAATCAGTACGATTCACATG+AGG	0.718954	8.4:-3015605	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AATATATTGAGAAACAAATA+CGG	-	chr8.4:3015373-3015392	None:intergenic	15.0%
!!	ATTAAGTTAAAACTTTCAAA+TGG	+	chr8.4:3015702-3015721	MS.gene060122:intron	15.0%
!!!	ATTTGTTTCTCAATATATTT+TGG	+	chr8.4:3015374-3015393	MS.gene060122:intron	15.0%
!!!	TTTGAAACAATTTTTAAAGA+TGG	+	chr8.4:3015161-3015180	MS.gene060122:intron	15.0%
!!!	TTTGATTTGATTGTTTTAAA+CGG	+	chr8.4:3014828-3014847	MS.gene060122:intron	15.0%
!!!	TTTTATAAACTTGATATAAC+TGG	+	chr8.4:3015223-3015242	MS.gene060122:intron	15.0%
!!	AAAAAATACAAATCTAGAAG+GGG	-	chr8.4:3014624-3014643	None:intergenic	20.0%
!!	AAAAATTGTTTCAAAACCTA+GGG	-	chr8.4:3015156-3015175	None:intergenic	20.0%
!!	AAAGAGACAAAATATATATG+TGG	-	chr8.4:3016590-3016609	None:intergenic	20.0%
!!	AAATATTATAGTCATTCCTT+TGG	-	chr8.4:3015926-3015945	None:intergenic	20.0%
!!	AAGTAAAAATAAGATGACAT+AGG	+	chr8.4:3016257-3016276	MS.gene060122:intron	20.0%
!!	AGTAAAAATAAGATGACATA+GGG	+	chr8.4:3016258-3016277	MS.gene060122:intron	20.0%
!!	ATAAAAATTGGAACATGATT+TGG	+	chr8.4:3014796-3014815	MS.gene060122:intron	20.0%
!!	ATACATTCATAGATTAAAGA+TGG	+	chr8.4:3016625-3016644	MS.gene060122:intron	20.0%
!!	CAAAAAATACAAATCTAGAA+GGG	-	chr8.4:3014625-3014644	None:intergenic	20.0%
!!	GGATATATAAAATGAGAATT+AGG	+	chr8.4:3015723-3015742	MS.gene060122:intron	20.0%
!!	GTTATCTTAATGTCTATTAA+GGG	+	chr8.4:3015774-3015793	MS.gene060122:intron	20.0%
!!	TAAAAATTGTTTCAAAACCT+AGG	-	chr8.4:3015157-3015176	None:intergenic	20.0%
!!	TCAAAAAATACAAATCTAGA+AGG	-	chr8.4:3014626-3014645	None:intergenic	20.0%
!!	TGTTATCTTAATGTCTATTA+AGG	+	chr8.4:3015773-3015792	MS.gene060122:intron	20.0%
!!	TGTTTGAATCGAATAAAAAT+TGG	+	chr8.4:3014784-3014803	MS.gene060122:intron	20.0%
!!	TTTAGTGTAATTATAAGTGT+CGG	+	chr8.4:3016152-3016171	MS.gene060122:intron	20.0%
!!!	ATAAAACATACTCAGTTTTT+AGG	-	chr8.4:3015818-3015837	None:intergenic	20.0%
!!!	GTCTCTTTAATTTGATTTAT+TGG	+	chr8.4:3016602-3016621	MS.gene060122:intron	20.0%
!!!	TTGCTATTGATATTTTCAAT+GGG	+	chr8.4:3015458-3015477	MS.gene060122:CDS	20.0%
!!!	TTTACATTATGTTTTATGTC+AGG	+	chr8.4:3015956-3015975	MS.gene060122:intron	20.0%
!	AATTCCTTATTCGATTAATC+TGG	+	chr8.4:3014645-3014664	MS.gene060122:intron	25.0%
!	GTTATATAGATGAGTTACAT+GGG	+	chr8.4:3015745-3015764	MS.gene060122:intron	25.0%
!	TTAACATGCTTCTGTTTATA+TGG	+	chr8.4:3014731-3014750	MS.gene060122:intron	25.0%
!	TTATATAGATGAGTTACATG+GGG	+	chr8.4:3015746-3015765	MS.gene060122:intron	25.0%
!	TTCTTCATGTTAGGAAAATA+TGG	-	chr8.4:3016011-3016030	None:intergenic	25.0%
!	TTTACATCTAGATCTAACAT+TGG	+	chr8.4:3014873-3014892	MS.gene060122:intron	25.0%
!!	ACTTGTTTGTATTCACATTT+TGG	-	chr8.4:3016373-3016392	None:intergenic	25.0%
!!	TATTTGACTTTCTTCATGTT+AGG	-	chr8.4:3016020-3016039	None:intergenic	25.0%
!!	TTCACAGTAAATTTTACCAA+AGG	+	chr8.4:3015907-3015926	MS.gene060122:intron	25.0%
!!	TTGATTGATATTTCTGAAGA+TGG	+	chr8.4:3015632-3015651	MS.gene060122:CDS	25.0%
!!!	AATTGTGCTAACTTGTTTAT+TGG	+	chr8.4:3015344-3015363	MS.gene060122:intron	25.0%
!!!	AGTTAATCTCTTTTTCAACA+TGG	-	chr8.4:3014932-3014951	None:intergenic	25.0%
!!!	ATTGTGCTAACTTGTTTATT+GGG	+	chr8.4:3015345-3015364	MS.gene060122:intron	25.0%
!!!	GTTGCTATTGATATTTTCAA+TGG	+	chr8.4:3015457-3015476	MS.gene060122:CDS	25.0%
!!!	GTTTCTCAATATATTTTGGT+AGG	+	chr8.4:3015378-3015397	MS.gene060122:intron	25.0%
!!!	TGTTTATATGGTGTTGATTT+TGG	+	chr8.4:3014743-3014762	MS.gene060122:intron	25.0%
	ACTTCAAAAACAGGAAAACA+TGG	+	chr8.4:3015415-3015434	MS.gene060122:CDS	30.0%
	CCTAAACAAAACATTCATGT+AGG	-	chr8.4:3016457-3016476	None:intergenic	30.0%
	CTAACTTACATCACAATTGT+GGG	-	chr8.4:3015512-3015531	None:intergenic	30.0%
	GATTCCAGATTAATCGAATA+AGG	-	chr8.4:3014652-3014671	None:intergenic	30.0%
	GGTTATATAGATGAGTTACA+TGG	+	chr8.4:3015744-3015763	MS.gene060122:intron	30.0%
	TAATGTCTATTAAGGGATGA+GGG	+	chr8.4:3015781-3015800	MS.gene060122:intron	30.0%
	TAGTTGACATTCTTCATGTT+AGG	-	chr8.4:3015886-3015905	None:intergenic	30.0%
	TATATAGATGAGTTACATGG+GGG	+	chr8.4:3015747-3015766	MS.gene060122:intron	30.0%
	TCAAATAAGTCAATCCAAAC+AGG	+	chr8.4:3015130-3015149	MS.gene060122:intron	30.0%
	TCTAACTTACATCACAATTG+TGG	-	chr8.4:3015513-3015532	None:intergenic	30.0%
	TTAATGTCTATTAAGGGATG+AGG	+	chr8.4:3015780-3015799	MS.gene060122:intron	30.0%
	TTACTTGTGACAACTTTAGT+AGG	+	chr8.4:3015673-3015692	MS.gene060122:intron	30.0%
	TTCTTCATGTTAGGAAAACA+AGG	-	chr8.4:3015877-3015896	None:intergenic	30.0%
	TTGCTTTCGAAGATAACAAT+TGG	+	chr8.4:3015844-3015863	MS.gene060122:intron	30.0%
!!	ATTAAAGATGGATTTGCTGA+TGG	+	chr8.4:3016637-3016656	MS.gene060122:CDS	30.0%
!!!	ATTTTGGTTGATTGGTAACT+GGG	+	chr8.4:3014759-3014778	MS.gene060122:intron	30.0%
!!!	CATTGGAATTTTAGTTTTGC+TGG	+	chr8.4:3015289-3015308	MS.gene060122:intron	30.0%
!!!	CCTACATGAATGTTTTGTTT+AGG	+	chr8.4:3016454-3016473	MS.gene060122:intron	30.0%
!!!	TATATTTTGGTAGGTTGTTG+AGG	+	chr8.4:3015387-3015406	MS.gene060122:intron	30.0%
	ACAAGTGCACAACAAGAAAA+AGG	+	chr8.4:3016387-3016406	MS.gene060122:intron	35.0%
	ATACAAATCTAGAAGGGGAA+AGG	-	chr8.4:3014619-3014638	None:intergenic	35.0%
	CAAGTGCACAACAAGAAAAA+GGG	+	chr8.4:3016388-3016407	MS.gene060122:intron	35.0%
	GAGGTTTCTACTTCAAAAAC+AGG	+	chr8.4:3015406-3015425	MS.gene060122:CDS	35.0%
	GAGTTTACAACTATGAAGCA+TGG	-	chr8.4:3016202-3016221	None:intergenic	35.0%
	GTAAGTAGTGAATCATCAGT+AGG	-	chr8.4:3016527-3016546	None:intergenic	35.0%
	TAAACGGAGACATAGACATA+TGG	+	chr8.4:3014844-3014863	MS.gene060122:intron	35.0%
	TAATCAGTACGATTCACATG+AGG	-	chr8.4:3015608-3015627	None:intergenic	35.0%
	TACAAATCTAGAAGGGGAAA+GGG	-	chr8.4:3014618-3014637	None:intergenic	35.0%
	TCACTACTTACTCAGGTATT+GGG	+	chr8.4:3016536-3016555	MS.gene060122:intron	35.0%
	TGATGATTCACTACTTACTC+AGG	+	chr8.4:3016529-3016548	MS.gene060122:CDS	35.0%
	TTATGCTATTGTCATTGCAG+TGG	+	chr8.4:3016419-3016438	MS.gene060122:intron	35.0%
	TTCACTACTTACTCAGGTAT+TGG	+	chr8.4:3016535-3016554	MS.gene060122:intron	35.0%
	TTGTGACAACTTTAGTAGGT+GGG	+	chr8.4:3015677-3015696	MS.gene060122:intron	35.0%
!!!	CATACTCAGTTTTTAGGACA+TGG	-	chr8.4:3015812-3015831	None:intergenic	35.0%
!!!	GATTTTGGTTGATTGGTAAC+TGG	+	chr8.4:3014758-3014777	MS.gene060122:intron	35.0%
!!!	TGGTGTTGATTTTGGTTGAT+TGG	+	chr8.4:3014751-3014770	MS.gene060122:intron	35.0%
	ACATCACAATTGTGGGATGA+AGG	-	chr8.4:3015505-3015524	None:intergenic	40.0%
	AGGAAGCTTCAGATCATCTT+TGG	-	chr8.4:3016507-3016526	None:intergenic	40.0%
	ATCATCTTTGCTCTCTTTGC+AGG	+	chr8.4:3015580-3015599	MS.gene060122:intron	40.0%
	CCCTATAATCCTTGACAACA+GGG	+	chr8.4:3015265-3015284	MS.gene060122:intron	40.0%
	CCCTGTTGTCAAGGATTATA+GGG	-	chr8.4:3015268-3015287	None:intergenic	40.0%
	CTTGTGACAACTTTAGTAGG+TGG	+	chr8.4:3015676-3015695	MS.gene060122:intron	40.0%
	GAAAAGCAGAAAACCTTGCA+AGG	-	chr8.4:3014596-3014615	None:intergenic	40.0%
	GTTACATAGTCATCAAGTCC+AGG	+	chr8.4:3014570-3014589	MS.gene060122:CDS	40.0%
	GTTTCTGTTATGTCTGCGAT+GGG	+	chr8.4:3016673-3016692	MS.gene060122:CDS	40.0%
	TCCCTATAATCCTTGACAAC+AGG	+	chr8.4:3015264-3015283	MS.gene060122:intron	40.0%
	TCCCTGTTGTCAAGGATTAT+AGG	-	chr8.4:3015269-3015288	None:intergenic	40.0%
	TGCTGTAAACCTATGAAGCA+CGG	+	chr8.4:3016073-3016092	MS.gene060122:intron	40.0%
!	CACTACTTACTCAGGTATTG+GGG	+	chr8.4:3016537-3016556	MS.gene060122:intron	40.0%
!!	GTGAGTTTGTTGACTGACAA+TGG	+	chr8.4:3016476-3016495	MS.gene060122:CDS	40.0%
!!	TATAAGTGTCGGTGTTGTGT+CGG	+	chr8.4:3016163-3016182	MS.gene060122:intron	40.0%
	ACTTAGGACCAATGTCCTTC+AGG	-	chr8.4:3016717-3016736	None:intergenic	45.0%
	ATATGTGCCCTGAAGGACAT+TGG	+	chr8.4:3016706-3016725	MS.gene060122:CDS	45.0%
	ATCCAAAACCTACCCTCAAC+AGG	+	chr8.4:3014526-3014545	MS.gene060122:CDS	45.0%
	ATCCTTGACAACAGGGACAT+TGG	+	chr8.4:3015272-3015291	MS.gene060122:intron	45.0%
	CGACATCGTTAGGATGAGTT+AGG	+	chr8.4:3015193-3015212	MS.gene060122:intron	45.0%
	CTTAGGACCAATGTCCTTCA+GGG	-	chr8.4:3016716-3016735	None:intergenic	45.0%
	GAATAGTACCAGCCTGTTGA+GGG	-	chr8.4:3014541-3014560	None:intergenic	45.0%
	GCTGGTACTATTCGCAAGAA+TGG	+	chr8.4:3014548-3014567	MS.gene060122:CDS	45.0%
	GGTTTCTGTTATGTCTGCGA+TGG	+	chr8.4:3016672-3016691	MS.gene060122:CDS	45.0%
	TGCTGATGGAAAAGATCTCG+TGG	+	chr8.4:3016651-3016670	MS.gene060122:CDS	45.0%
	TGTCTGTATCCGTGCTTCAT+AGG	-	chr8.4:3016085-3016104	None:intergenic	45.0%
	TTCAAAACCTAGGGCCTGTT+TGG	-	chr8.4:3015147-3015166	None:intergenic	45.0%
	TTCCAATGTCCCTGTTGTCA+AGG	-	chr8.4:3015277-3015296	None:intergenic	45.0%
	AAAACCTACCCTCAACAGGC+TGG	+	chr8.4:3014530-3014549	MS.gene060122:CDS	50.0%
	AGAGCAGATATGTGCCCTGA+AGG	+	chr8.4:3016699-3016718	MS.gene060122:CDS	50.0%
	AGTCAATCCAAACAGGCCCT+AGG	+	chr8.4:3015137-3015156	MS.gene060122:intron	50.0%
	CGAATAGTACCAGCCTGTTG+AGG	-	chr8.4:3014542-3014561	None:intergenic	50.0%
	GACACGTAGTCGACATCGTT+AGG	+	chr8.4:3015183-3015202	MS.gene060122:intron	50.0%
	TGAAGCACGGATACAGACAC+CGG	+	chr8.4:3016086-3016105	MS.gene060122:intron	50.0%
!	AGCCTGTTGAGGGTAGGTTT+TGG	-	chr8.4:3014531-3014550	None:intergenic	50.0%
!!!	AGGGTAGGTTTTGGATGCTC+CGG	-	chr8.4:3014522-3014541	None:intergenic	50.0%
	ACGGATACAGACACCGGACA+CGG	+	chr8.4:3016092-3016111	MS.gene060122:intron	55.0%
	AGTACCAGCCTGTTGAGGGT+AGG	-	chr8.4:3014537-3014556	None:intergenic	55.0%
	CATCAAGTCCAGGCCTTGCA+AGG	+	chr8.4:3014580-3014599	MS.gene060122:CDS	55.0%
	GCAGAAAACCTTGCAAGGCC+TGG	-	chr8.4:3014591-3014610	None:intergenic	55.0%
	GTTATGCCAGTGTCCGTGTC+CGG	-	chr8.4:3016108-3016127	None:intergenic	55.0%
!!!	GGTTTTGGATGCTCCGGCAT+CGG	-	chr8.4:3014516-3014535	None:intergenic	55.0%
	TTTGAACCCGCTGCCGATGC+CGG	+	chr8.4:3014500-3014519	MS.gene060122:CDS	60.0%
	CAGACACCGGACACGGACAC+TGG	+	chr8.4:3016099-3016118	MS.gene060122:intron	65.0%
!!	GATGCTCCGGCATCGGCAGC+GGG	-	chr8.4:3014509-3014528	None:intergenic	70.0%
!!	GGATGCTCCGGCATCGGCAG+CGG	-	chr8.4:3014510-3014529	None:intergenic	70.0%

Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	3014479	3016738	3014479	ID=MS.gene060122
chr8.4	mRNA	3014479	3016738	3014479	ID=MS.gene060122.t1;Parent=MS.gene060122
chr8.4	exon	3014479	3014601	3014479	ID=MS.gene060122.t1.exon1;Parent=MS.gene060122.t1
chr8.4	CDS	3014479	3014601	3014479	ID=cds.MS.gene060122.t1;Parent=MS.gene060122.t1
chr8.4	exon	3015400	3015522	3015400	ID=MS.gene060122.t1.exon2;Parent=MS.gene060122.t1
chr8.4	CDS	3015400	3015522	3015400	ID=cds.MS.gene060122.t1;Parent=MS.gene060122.t1
chr8.4	exon	3015602	3015658	3015602	ID=MS.gene060122.t1.exon3;Parent=MS.gene060122.t1
chr8.4	CDS	3015602	3015658	3015602	ID=cds.MS.gene060122.t1;Parent=MS.gene060122.t1
chr8.4	exon	3016476	3016550	3016476	ID=MS.gene060122.t1.exon4;Parent=MS.gene060122.t1
chr8.4	CDS	3016476	3016550	3016476	ID=cds.MS.gene060122.t1;Parent=MS.gene060122.t1
chr8.4	exon	3016637	3016738	3016637	ID=MS.gene060122.t1.exon5;Parent=MS.gene060122.t1
chr8.4	CDS	3016637	3016738	3016637	ID=cds.MS.gene060122.t1;Parent=MS.gene060122.t1

Gene Sequence

>MS.gene060122

ATGTCTGACGAAGAACATCACTTTGAACCCGCTGCCGATGCCGGAGCATCCAAAACCTACCCTCAACAGGCTGGTACTATTCGCAAGAATGGTTACATAGTCATCAAGTCCAGGCCTTGCAAGGTTTTCTGCTTTTCCCTTTCCCCTTCTAGATTTGTATTTTTTGAATTCCTTATTCGATTAATCTGGAATCTCACTCTGATTGTGATTTATGCTATTGTATGATTAAGATTTGTATATTTTCTGTATTAATTAACATGCTTCTGTTTATATGGTGTTGATTTTGGTTGATTGGTAACTGGGAATGTTTGAATCGAATAAAAATTGGAACATGATTTGGTTGTTTTGATTTGATTTGATTGTTTTAAACGGAGACATAGACATATGGTGCTATTTTACATCTAGATCTAACATTGGCTGCAATAAATAATTGTGAAAAAAAATTAAGTTCCATGTTGAAAAAGAGATTAACTTAATTTACAGCTTATATAGCATAAGCACTTATGTATGAACTTTTTATAAAATAAAGTTTATTAGTTTTTTTCTATACTCTTTTTAAGAGAGCTTGTGAAAATAAACTGAAAATGACTTACAACTATCTCATTAACTGTTTTCACAAGTTTTTGCAAATGCTCGATTATATCGTTAAGCTCAAATAAGTCAATCCAAACAGGCCCTAGGTTTTGAAACAATTTTTAAAGATGGACACGTAGTCGACATCGTTAGGATGAGTTAGGTTTAATTTTTTATAAACTTGATATAACTGGAATTATCAATCGTGTTGATCCCTATAATCCTTGACAACAGGGACATTGGAATTTTAGTTTTGCTGGAATATTTCTTTGTTATTATGATTTTCATTCTCAATTGTGCTAACTTGTTTATTGGGTGCCGTATTTGTTTCTCAATATATTTTGGTAGGTTGTTGAGGTTTCTACTTCAAAAACAGGAAAACATGGACATGCAAAGTGTCACTTTGTTGCTATTGATATTTTCAATGGGAAAAAACTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGTTAGATCTTTCTTCATTTATGTTTTTTAGATTTTTGTTTTATGCATTTTTTAATCATCTTTGCTCTCTTTGCAGGTTCCTCATGTGAATCGTACTGATTATCAGTTGATTGATATTTCTGAAGATGGATTTGTAAGTTTTTTCTTTTACTTGTGACAACTTTAGTAGGTGGGAAATTAAGTTAAAACTTTCAAATGGATATATAAAATGAGAATTAGGTTATATAGATGAGTTACATGGGGGTGTTGTTATCTTAATGTCTATTAAGGGATGAGGGCACTACCATGTCCTAAAAACTGAGTATGTTTTATGTAAGATTGCTTTCGAAGATAACAATTGGTTTTCTGCCTTGTTTTCCTAACATGAAGAATGTCAACTATTTCACAGTAAATTTTACCAAAGGAATGACTATAATATTTTCTTTTGACTTTTACATTATGTTTTATGTCAGGTTGCTTTCAAAGATAACAATTGTTTTCTACCATATTTTCCTAACATGAAGAAAGTCAAATATTTCACATTAAATATAACATTTTTTTTGACTTTTGCTGTAAACCTATGAAGCACGGATACAGACACCGGACACGGACACTGGCATAACTAATAATTTGAAAAAATCACATAATTTAGTGTAATTATAAGTGTCGGTGTTGTGTCGGACACGACACGTGTCCATGCTTCATAGTTGTAAACTCTATTATACATTCAATTCAAGTTTTTGTTAGCACATAAGTAAAAATAAGATGACATAGGGTGCATTCTCTAAACTGTATTTTTCTCATGTTGAATAAATATTGTCACATTGTTGATTTGAAAAGATAAATAATGAAGAATTATGACACTCCAAAATGTGAATACAAACAAGTGCACAACAAGAAAAAGGGACAAATTATTATGCTATTGTCATTGCAGTGGATCATTTATTAACCTACATGAATGTTTTGTTTAGGTGAGTTTGTTGACTGACAATGGAAGTACCAAAGATGATCTGAAGCTTCCTACTGATGATTCACTACTTACTCAGGTATTGGGGTTTTATAAAATTAGTTATGAATTTATGCCACATATATATTTTGTCTCTTTAATTTGATTTATTGGATACATTCATAGATTAAAGATGGATTTGCTGATGGAAAAGATCTCGTGGTTTCTGTTATGTCTGCGATGGGTGAAGAGCAGATATGTGCCCTGAAGGACATTGGTCCTAAGTAG

Protein sequence

>MS.gene060122.t1

MSDEEHHFEPAADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGSTKDDLKLPTDDSLLTQIKDGFADGKDLVVSVMSAMGEEQICALKDIGPK