Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66830.t1 | XP_003603866.1 | 98 | 253 | 5 | 0 | 7 | 259 | 76 | 328 | 1.40E-135 | 492.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66830.t1 | Q8GWA7 | 61.6 | 237 | 88 | 3 | 4 | 237 | 109 | 345 | 1.5e-77 | 290.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66830.t1 | G7J6F8 | 98.0 | 253 | 5 | 0 | 7 | 259 | 76 | 328 | 1.0e-135 | 492.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049285 | MS.gene66830 | 0.800517 | 1.39E-48 | -1.69E-46 |
| MS.gene054642 | MS.gene66830 | 0.801716 | 7.90E-49 | -1.69E-46 |
| MS.gene058773 | MS.gene66830 | 0.812512 | 4.08E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66830.t1 | MTR_3g116050 | 98.069 | 259 | 5 | 0 | 1 | 259 | 70 | 328 | 0.0 | 524 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66830.t1 | AT1G20830 | 63.043 | 230 | 82 | 3 | 4 | 230 | 10 | 239 | 2.56e-105 | 305 |
| MS.gene66830.t1 | AT1G20830 | 63.043 | 230 | 82 | 3 | 4 | 230 | 109 | 338 | 3.55e-104 | 306 |
Find 61 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTGTTGCTGTTGTAATTT+TGG | 0.111441 | 3.4:+98997337 | MS.gene66830:CDS |
| CATCCCAATGCCGCAATTTC+TGG | 0.160726 | 3.4:+98997182 | None:intergenic |
| TTGGGAGCAATTTACCGATT+TGG | 0.287214 | 3.4:+98997312 | MS.gene66830:CDS |
| TGGGAGCAATTTACCGATTT+GGG | 0.323263 | 3.4:+98997313 | MS.gene66830:CDS |
| GGGCTTCAAGCTTTCTCTGC+AGG | 0.352570 | 3.4:-98998579 | None:intergenic |
| TCAAATTCTTTAGCATTGAT+AGG | 0.353758 | 3.4:-98999280 | None:intergenic |
| GATGCACTTCCAAAGTTATT+CGG | 0.363736 | 3.4:-98999403 | None:intergenic |
| GAAGAGCTCTTTAAACAATC+AGG | 0.385369 | 3.4:+98999345 | MS.gene66830:CDS |
| TCCTCTTGAGTAAGTGTGAC+AGG | 0.397039 | 3.4:-98998325 | None:intergenic |
| AGATGTGTGGAAAGGTTTAC+CGG | 0.414408 | 3.4:+98998296 | MS.gene66830:CDS |
| GACAGCAGGCCGAATAACTT+TGG | 0.423013 | 3.4:+98999394 | MS.gene66830:CDS |
| CCTACCAGAAATTGCGGCAT+TGG | 0.435076 | 3.4:-98997186 | None:intergenic |
| GCAACCACCTCTACAGATAT+CGG | 0.441091 | 3.4:+98998484 | MS.gene66830:CDS |
| CACACTTACTCAAGAGGAAC+AGG | 0.447227 | 3.4:+98998330 | MS.gene66830:CDS |
| TTTGGAAGTGCATCATCATC+TGG | 0.449415 | 3.4:+98999412 | MS.gene66830:CDS |
| TAAGTGTGACAGGGGCTAAC+CGG | 0.458683 | 3.4:-98998315 | None:intergenic |
| GGCTTCAAGCTTTCTCTGCA+GGG | 0.469067 | 3.4:-98998578 | None:intergenic |
| ATCTGTAGAGGTGGTTGCAA+AGG | 0.470698 | 3.4:-98998479 | None:intergenic |
| GAACTGAGTCTCCTTCCTTA+AGG | 0.471097 | 3.4:-98998408 | None:intergenic |
| TGTAGACTAATCGAAACATT+GGG | 0.478399 | 3.4:+98997294 | MS.gene66830:intron |
| ATTGTATCGGGATCAACATC+TGG | 0.478900 | 3.4:-98998433 | None:intergenic |
| ACAGCAACACAGACCCAAAT+CGG | 0.483257 | 3.4:-98997326 | None:intergenic |
| CCTCATGCTCAGCTTGAATA+CGG | 0.491562 | 3.4:-98998555 | None:intergenic |
| ATGTTGATCCCGATACAATC+AGG | 0.507636 | 3.4:+98998437 | MS.gene66830:CDS |
| GGAATCCACCTGATTGTATC+GGG | 0.511366 | 3.4:-98998445 | None:intergenic |
| ACGCACGTGATCTCCTTCTC+TGG | 0.511994 | 3.4:-98998360 | None:intergenic |
| CATGATCATTTAATCTGCCA+TGG | 0.520486 | 3.4:-98999318 | None:intergenic |
| CCTCTTGAGTAAGTGTGACA+GGG | 0.528748 | 3.4:-98998324 | None:intergenic |
| ACAAGATCAGCTACGGAACC+AGG | 0.529125 | 3.4:-98997407 | None:intergenic |
| AGGAATCCACCTGATTGTAT+CGG | 0.532431 | 3.4:-98998446 | None:intergenic |
| TCTCCTCAAAATTAGACAGC+AGG | 0.532874 | 3.4:+98999380 | MS.gene66830:CDS |
| GTTGCAAAGGGATGATTCGC+AGG | 0.533369 | 3.4:-98998466 | None:intergenic |
| TTGTAGACTAATCGAAACAT+TGG | 0.537325 | 3.4:+98997293 | MS.gene66830:intron |
| AACAGGCGGTTCACCAGAGA+AGG | 0.544520 | 3.4:+98998347 | MS.gene66830:CDS |
| GGAGATCACGTGCGTATCAG+TGG | 0.548992 | 3.4:+98998368 | MS.gene66830:CDS |
| TCTGTAGAGGTGGTTGCAAA+GGG | 0.561104 | 3.4:-98998478 | None:intergenic |
| CCCTGTCACACTTACTCAAG+AGG | 0.564938 | 3.4:+98998324 | MS.gene66830:CDS |
| ATTCGATAATCCCTTGGTCA+AGG | 0.575622 | 3.4:+98998249 | MS.gene66830:CDS |
| GAGAGACCATTCGACTCCCA+TGG | 0.588483 | 3.4:+98999301 | MS.gene66830:CDS |
| AGATCCATTCGATAATCCCT+TGG | 0.593415 | 3.4:+98998243 | MS.gene66830:CDS |
| TAGACGCGGTCAATTGAGAT+CGG | 0.593965 | 3.4:+98997430 | MS.gene66830:CDS |
| CCGTATTCAAGCTGAGCATG+AGG | 0.599509 | 3.4:+98998555 | MS.gene66830:CDS |
| CTCGCCGATATCTGTAGAGG+TGG | 0.601270 | 3.4:-98998488 | None:intergenic |
| AAGTGTAGAGATGTGTGGAA+AGG | 0.612784 | 3.4:+98998288 | MS.gene66830:CDS |
| TGAAAGCCTACCAGAAATTG+CGG | 0.615471 | 3.4:-98997192 | None:intergenic |
| TGCTCAGCTTGAATACGGAA+AGG | 0.619175 | 3.4:-98998550 | None:intergenic |
| ATGATCATTTAATCTGCCAT+GGG | 0.621182 | 3.4:-98999317 | None:intergenic |
| TTGACCAAGGGATTATCGAA+TGG | 0.627921 | 3.4:-98998247 | None:intergenic |
| GCGTCTAACAAGATCAGCTA+CGG | 0.634159 | 3.4:-98997414 | None:intergenic |
| GTCCTCGCCGATATCTGTAG+AGG | 0.664154 | 3.4:-98998491 | None:intergenic |
| TTGATCCCGATACAATCAGG+TGG | 0.673066 | 3.4:+98998440 | MS.gene66830:CDS |
| CCTTCCTTAAGGAAAACTGT+GGG | 0.676647 | 3.4:-98998397 | None:intergenic |
| CTCTTGAGTAAGTGTGACAG+GGG | 0.681129 | 3.4:-98998323 | None:intergenic |
| TCCTTCCTTAAGGAAAACTG+TGG | 0.681803 | 3.4:-98998398 | None:intergenic |
| AAATCAAGTGTAGAGATGTG+TGG | 0.686378 | 3.4:+98998283 | MS.gene66830:CDS |
| CAATTGAGATCGGATAGAAG+AGG | 0.688587 | 3.4:+98997440 | MS.gene66830:CDS |
| GTATCGGGATCAACATCTGG+AGG | 0.693969 | 3.4:-98998430 | None:intergenic |
| GTAGCTGATCTTGTTAGACG+CGG | 0.705664 | 3.4:+98997416 | MS.gene66830:CDS |
| ACTTACTCAAGAGGAACAGG+CGG | 0.707329 | 3.4:+98998333 | MS.gene66830:CDS |
| AATCTGCCATGGGAGTCGAA+TGG | 0.713980 | 3.4:-98999307 | None:intergenic |
| CACCTCTACAGATATCGGCG+AGG | 0.722742 | 3.4:+98998489 | MS.gene66830:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTCTTGATTAAATTTAAAT+TGG | - | chr3.4:98999173-98999192 | None:intergenic | 10.0% |
| !! | TAATAATATATATTACTACT+AGG | + | chr3.4:98998120-98998139 | MS.gene66830:intron | 10.0% |
| !! | GTCTGAATAAAAAAAATTAA+TGG | + | chr3.4:98999001-98999020 | MS.gene66830:intron | 15.0% |
| !! | TAAATTCATGTATATTTCTT+TGG | - | chr3.4:98998094-98998113 | None:intergenic | 15.0% |
| !!! | AATTTTATAATCCAAATCTA+AGG | - | chr3.4:98997884-98997903 | None:intergenic | 15.0% |
| !!! | TCTTATTTTAATTCAGATTA+GGG | + | chr3.4:98997239-98997258 | MS.gene66830:intron | 15.0% |
| !!! | TTCTTATTTTAATTCAGATT+AGG | + | chr3.4:98997238-98997257 | MS.gene66830:intron | 15.0% |
| !! | AATCAAGAATATCAAGAAAT+TGG | + | chr3.4:98999183-98999202 | MS.gene66830:intron | 20.0% |
| !! | TGCAGAATAAATAATACAAA+AGG | - | chr3.4:98999229-98999248 | None:intergenic | 20.0% |
| !!! | AATTGATTTTTCCTTAGATT+TGG | + | chr3.4:98997870-98997889 | MS.gene66830:intron | 20.0% |
| !!! | TTATCTAAATTGACTTATCT+AGG | - | chr3.4:98997527-98997546 | None:intergenic | 20.0% |
| !!! | TTTTGTATTATTTATTCTGC+AGG | + | chr3.4:98999228-98999247 | MS.gene66830:intron | 20.0% |
| !!! | TTTTTACCCTCTTTTTTTAT+TGG | + | chr3.4:98999113-98999132 | MS.gene66830:intron | 20.0% |
| ! | AAAAATGTTAGTCAAAAGCA+TGG | + | chr3.4:98998523-98998542 | MS.gene66830:CDS | 25.0% |
| ! | AAAGACAACAATGTAATAAC+GGG | - | chr3.4:98998175-98998194 | None:intergenic | 25.0% |
| ! | ACAAAACATTAGACATAACA+TGG | + | chr3.4:98998807-98998826 | MS.gene66830:intron | 25.0% |
| ! | GAAAGACAACAATGTAATAA+CGG | - | chr3.4:98998176-98998195 | None:intergenic | 25.0% |
| ! | TAAATAATACAAAAGGTGAG+TGG | - | chr3.4:98999222-98999241 | None:intergenic | 25.0% |
| ! | TTAGAGCTTGAACAAAATTA+TGG | + | chr3.4:98997642-98997661 | MS.gene66830:intron | 25.0% |
| !! | GGTTTTTATGGTATTTGATA+TGG | + | chr3.4:98997267-98997286 | MS.gene66830:intron | 25.0% |
| !! | TAAAAGGCAAAAGTGATTTT+TGG | + | chr3.4:98997797-98997816 | MS.gene66830:intron | 25.0% |
| !! | TTAATTCAGATTAGGGTTTT+GGG | + | chr3.4:98997246-98997265 | MS.gene66830:intron | 25.0% |
| !! | TTTAATTCAGATTAGGGTTT+TGG | + | chr3.4:98997245-98997264 | MS.gene66830:intron | 25.0% |
| !!! | TCAAATTCTTTAGCATTGAT+AGG | - | chr3.4:98999283-98999302 | None:intergenic | 25.0% |
| !!! | TTCTTTTTTCCTGGAAAATT+TGG | - | chr3.4:98997384-98997403 | None:intergenic | 25.0% |
| !!! | TTTTTTATTCAGACATCACT+TGG | - | chr3.4:98998995-98999014 | None:intergenic | 25.0% |
| ATGATCATTTAATCTGCCAT+GGG | - | chr3.4:98999320-98999339 | None:intergenic | 30.0% | |
| ATGTAAGTCTTAGCAGAATA+AGG | + | chr3.4:98998608-98998627 | MS.gene66830:intron | 30.0% | |
| ATTATTTATTCTGCAGGAAG+AGG | + | chr3.4:98999234-98999253 | MS.gene66830:intron | 30.0% | |
| ATTTAGATTAACCGTTAGTG+TGG | + | chr3.4:98997553-98997572 | MS.gene66830:intron | 30.0% | |
| CTTCTGCCAATAAAAAAAGA+GGG | - | chr3.4:98999122-98999141 | None:intergenic | 30.0% | |
| TATCCATACACTCTTCATTA+GGG | - | chr3.4:98999029-98999048 | None:intergenic | 30.0% | |
| TGTAGACTAATCGAAACATT+GGG | + | chr3.4:98997294-98997313 | MS.gene66830:intron | 30.0% | |
| TTGTAGACTAATCGAAACAT+TGG | + | chr3.4:98997293-98997312 | MS.gene66830:intron | 30.0% | |
| ! | AAATTGACTTATCTAGGCAT+TGG | - | chr3.4:98997521-98997540 | None:intergenic | 30.0% |
| ! | AATTGACTTATCTAGGCATT+GGG | - | chr3.4:98997520-98997539 | None:intergenic | 30.0% |
| ! | GCTAAGACTTACATTTTGTA+GGG | - | chr3.4:98998602-98998621 | None:intergenic | 30.0% |
| ! | TCTAAAACTGCATCAAACAT+AGG | - | chr3.4:98998646-98998665 | None:intergenic | 30.0% |
| ! | TGCTAAGACTTACATTTTGT+AGG | - | chr3.4:98998603-98998622 | None:intergenic | 30.0% |
| ! | TGGACTTATCTTGACATTTT+TGG | + | chr3.4:98998885-98998904 | MS.gene66830:intron | 30.0% |
| !! | AAGAGTGTATGGATACATTT+TGG | + | chr3.4:98999034-98999053 | MS.gene66830:intron | 30.0% |
| !! | TATGTTTGATGCAGTTTTAG+AGG | + | chr3.4:98998645-98998664 | MS.gene66830:intron | 30.0% |
| !!! | AATTTTGGTTGCTTCTTTGA+GGG | + | chr3.4:98997352-98997371 | MS.gene66830:CDS | 30.0% |
| !!! | ATTAGGGTTTTGGGTTTTTA+TGG | + | chr3.4:98997255-98997274 | MS.gene66830:intron | 30.0% |
| !!! | ATTTTGATTGCTGTTTAGTC+TGG | - | chr3.4:98997684-98997703 | None:intergenic | 30.0% |
| !!! | GTTTGGCTTCACTTTTTAAA+AGG | + | chr3.4:98997781-98997800 | MS.gene66830:intron | 30.0% |
| !!! | TAATTTTGGTTGCTTCTTTG+AGG | + | chr3.4:98997351-98997370 | MS.gene66830:CDS | 30.0% |
| AAATCAAGTGTAGAGATGTG+TGG | + | chr3.4:98998283-98998302 | MS.gene66830:CDS | 35.0% | |
| ATCCATACACTCTTCATTAG+GGG | - | chr3.4:98999028-98999047 | None:intergenic | 35.0% | |
| ATCCTAGTTGCTAAGGATTT+GGG | + | chr3.4:98998692-98998711 | MS.gene66830:intron | 35.0% | |
| CATGATCATTTAATCTGCCA+TGG | - | chr3.4:98999321-98999340 | None:intergenic | 35.0% | |
| CCTTCTGCCAATAAAAAAAG+AGG | - | chr3.4:98999123-98999142 | None:intergenic | 35.0% | |
| GAAGAGCTCTTTAAACAATC+AGG | + | chr3.4:98999345-98999364 | MS.gene66830:CDS | 35.0% | |
| GATGCACTTCCAAAGTTATT+CGG | - | chr3.4:98999406-98999425 | None:intergenic | 35.0% | |
| GTATCCATACACTCTTCATT+AGG | - | chr3.4:98999030-98999049 | None:intergenic | 35.0% | |
| TAGCAACTAGGATAAAGACA+TGG | - | chr3.4:98998685-98998704 | None:intergenic | 35.0% | |
| TATCCTAGTTGCTAAGGATT+TGG | + | chr3.4:98998691-98998710 | MS.gene66830:intron | 35.0% | |
| TGTCTTTATCCTAGTTGCTA+AGG | + | chr3.4:98998685-98998704 | MS.gene66830:intron | 35.0% | |
| TGTTTAGTCTGGCAAAATTG+TGG | - | chr3.4:98997673-98997692 | None:intergenic | 35.0% | |
| !! | CTGTGTTGCTGTTGTAATTT+TGG | + | chr3.4:98997337-98997356 | MS.gene66830:CDS | 35.0% |
| !! | TGTGCATGTTTTTCAGATCA+AGG | + | chr3.4:98998206-98998225 | MS.gene66830:intron | 35.0% |
| !! | TTTGTTCAAGCTCTAAAGTG+TGG | - | chr3.4:98997638-98997657 | None:intergenic | 35.0% |
| !!! | CCTCTTTTTTTATTGGCAGA+AGG | + | chr3.4:98999120-98999139 | MS.gene66830:intron | 35.0% |
| AAGTGTAGAGATGTGTGGAA+AGG | + | chr3.4:98998288-98998307 | MS.gene66830:CDS | 40.0% | |
| ACGGGAAGCTAAATCTCAAT+AGG | - | chr3.4:98998157-98998176 | None:intergenic | 40.0% | |
| AGATCCATTCGATAATCCCT+TGG | + | chr3.4:98998243-98998262 | MS.gene66830:CDS | 40.0% | |
| AGATGTGTGGAAAGGTTTAC+CGG | + | chr3.4:98998296-98998315 | MS.gene66830:CDS | 40.0% | |
| AGGAATCCACCTGATTGTAT+CGG | - | chr3.4:98998449-98998468 | None:intergenic | 40.0% | |
| ATGTTGATCCCGATACAATC+AGG | + | chr3.4:98998437-98998456 | MS.gene66830:CDS | 40.0% | |
| ATTCGATAATCCCTTGGTCA+AGG | + | chr3.4:98998249-98998268 | MS.gene66830:CDS | 40.0% | |
| ATTCTGTTCTGCCACACTAA+CGG | - | chr3.4:98997567-98997586 | None:intergenic | 40.0% | |
| ATTGTATCGGGATCAACATC+TGG | - | chr3.4:98998436-98998455 | None:intergenic | 40.0% | |
| CAATTGAGATCGGATAGAAG+AGG | + | chr3.4:98997440-98997459 | MS.gene66830:CDS | 40.0% | |
| CCTTCCTTAAGGAAAACTGT+GGG | - | chr3.4:98998400-98998419 | None:intergenic | 40.0% | |
| GAAGCACATACTTCTACATG+AGG | - | chr3.4:98999088-98999107 | None:intergenic | 40.0% | |
| TCCTAGTTGCTAAGGATTTG+GGG | + | chr3.4:98998693-98998712 | MS.gene66830:intron | 40.0% | |
| TCCTTCCTTAAGGAAAACTG+TGG | - | chr3.4:98998401-98998420 | None:intergenic | 40.0% | |
| TCTCCTCAAAATTAGACAGC+AGG | + | chr3.4:98999380-98999399 | MS.gene66830:CDS | 40.0% | |
| TGAAAGCCTACCAGAAATTG+CGG | - | chr3.4:98997195-98997214 | None:intergenic | 40.0% | |
| TTGACCAAGGGATTATCGAA+TGG | - | chr3.4:98998250-98998269 | None:intergenic | 40.0% | |
| ! | CTTTTGCTAACCTTGACCAA+GGG | - | chr3.4:98998262-98998281 | None:intergenic | 40.0% |
| ! | TACATGAGGTGTAAGAGTGT+TGG | - | chr3.4:98999074-98999093 | None:intergenic | 40.0% |
| ! | TTGGGAGCAATTTACCGATT+TGG | + | chr3.4:98997312-98997331 | MS.gene66830:CDS | 40.0% |
| ! | TTTGGAAGTGCATCATCATC+TGG | + | chr3.4:98999412-98999431 | MS.gene66830:CDS | 40.0% |
| !! | CTGTCTAATTTTGAGGAGAG+GGG | - | chr3.4:98999379-98999398 | None:intergenic | 40.0% |
| !! | GCTGTCTAATTTTGAGGAGA+GGG | - | chr3.4:98999380-98999399 | None:intergenic | 40.0% |
| !! | TGCTGTCTAATTTTGAGGAG+AGG | - | chr3.4:98999381-98999400 | None:intergenic | 40.0% |
| !! | TGGGAGCAATTTACCGATTT+GGG | + | chr3.4:98997313-98997332 | MS.gene66830:CDS | 40.0% |
| ACAGCAACACAGACCCAAAT+CGG | - | chr3.4:98997329-98997348 | None:intergenic | 45.0% | |
| ACTTACTCAAGAGGAACAGG+CGG | + | chr3.4:98998333-98998352 | MS.gene66830:CDS | 45.0% | |
| ATCTGTAGAGGTGGTTGCAA+AGG | - | chr3.4:98998482-98998501 | None:intergenic | 45.0% | |
| CACACTTACTCAAGAGGAAC+AGG | + | chr3.4:98998330-98998349 | MS.gene66830:CDS | 45.0% | |
| CCTAGTTGCTAAGGATTTGG+GGG | + | chr3.4:98998694-98998713 | MS.gene66830:intron | 45.0% | |
| CCTCATGCTCAGCTTGAATA+CGG | - | chr3.4:98998558-98998577 | None:intergenic | 45.0% | |
| CCTCTTGAGTAAGTGTGACA+GGG | - | chr3.4:98998327-98998346 | None:intergenic | 45.0% | |
| CGTTCAACTCACTCTTACGT+AGG | + | chr3.4:98997959-98997978 | MS.gene66830:intron | 45.0% | |
| CTCTTGAGTAAGTGTGACAG+GGG | - | chr3.4:98998326-98998345 | None:intergenic | 45.0% | |
| GAACTGAGTCTCCTTCCTTA+AGG | - | chr3.4:98998411-98998430 | None:intergenic | 45.0% | |
| GCAACCACCTCTACAGATAT+CGG | + | chr3.4:98998484-98998503 | MS.gene66830:CDS | 45.0% | |
| GCGTCTAACAAGATCAGCTA+CGG | - | chr3.4:98997417-98997436 | None:intergenic | 45.0% | |
| GCTTGACATTGAGACACTTG+TGG | + | chr3.4:98998865-98998884 | MS.gene66830:intron | 45.0% | |
| GGAATCCACCTGATTGTATC+GGG | - | chr3.4:98998448-98998467 | None:intergenic | 45.0% | |
| GTAGCTGATCTTGTTAGACG+CGG | + | chr3.4:98997416-98997435 | MS.gene66830:CDS | 45.0% | |
| TAGACGCGGTCAATTGAGAT+CGG | + | chr3.4:98997430-98997449 | MS.gene66830:CDS | 45.0% | |
| TCCAGGAAAAAAGAACGTCC+TGG | + | chr3.4:98997389-98997408 | MS.gene66830:CDS | 45.0% | |
| TCCTCTTGAGTAAGTGTGAC+AGG | - | chr3.4:98998328-98998347 | None:intergenic | 45.0% | |
| TCTGTAGAGGTGGTTGCAAA+GGG | - | chr3.4:98998481-98998500 | None:intergenic | 45.0% | |
| TGCTCAGCTTGAATACGGAA+AGG | - | chr3.4:98998553-98998572 | None:intergenic | 45.0% | |
| TTGATCCCGATACAATCAGG+TGG | + | chr3.4:98998440-98998459 | MS.gene66830:CDS | 45.0% | |
| TTGCTAAGGATTTGGGGGTT+TGG | + | chr3.4:98998699-98998718 | MS.gene66830:intron | 45.0% | |
| ! | CCCACAGTTTTCCTTAAGGA+AGG | + | chr3.4:98998397-98998416 | MS.gene66830:CDS | 45.0% |
| ! | GACCCCTAATGAAGAGTGTA+TGG | + | chr3.4:98999023-98999042 | MS.gene66830:intron | 45.0% |
| ! | GCTTTTGCTAACCTTGACCA+AGG | - | chr3.4:98998263-98998282 | None:intergenic | 45.0% |
| ! | GGGCTCTTTCCAAATTTTCC+AGG | + | chr3.4:98997372-98997391 | MS.gene66830:CDS | 45.0% |
| !! | TTAGTGCTGTTTGAGTCGTG+AGG | + | chr3.4:98997710-98997729 | MS.gene66830:intron | 45.0% |
| !!! | ACCAGGACGTTCTTTTTTCC+TGG | - | chr3.4:98997393-98997412 | None:intergenic | 45.0% |
| AAACATCCACCAGGGGAATC+GGG | - | chr3.4:98997765-98997784 | None:intergenic | 50.0% | |
| AAAGTGGGTCACCAGGGATA+AGG | - | chr3.4:98997740-98997759 | None:intergenic | 50.0% | |
| AATCTGCCATGGGAGTCGAA+TGG | - | chr3.4:98999310-98999329 | None:intergenic | 50.0% | |
| ACAAGATCAGCTACGGAACC+AGG | - | chr3.4:98997410-98997429 | None:intergenic | 50.0% | |
| AGTGAAGCCAAACATCCACC+AGG | - | chr3.4:98997774-98997793 | None:intergenic | 50.0% | |
| CAAACATCCACCAGGGGAAT+CGG | - | chr3.4:98997766-98997785 | None:intergenic | 50.0% | |
| CAGGGGAATCGGGTAAAAGT+GGG | - | chr3.4:98997755-98997774 | None:intergenic | 50.0% | |
| CCCCCAAATCCTTAGCAACT+AGG | - | chr3.4:98998697-98998716 | None:intergenic | 50.0% | |
| CCCTGTCACACTTACTCAAG+AGG | + | chr3.4:98998324-98998343 | MS.gene66830:CDS | 50.0% | |
| CCGTATTCAAGCTGAGCATG+AGG | + | chr3.4:98998555-98998574 | MS.gene66830:CDS | 50.0% | |
| GACAGCAGGCCGAATAACTT+TGG | + | chr3.4:98999394-98999413 | MS.gene66830:CDS | 50.0% | |
| GGCTTCAAGCTTTCTCTGCA+GGG | - | chr3.4:98998581-98998600 | None:intergenic | 50.0% | |
| GTATCGGGATCAACATCTGG+AGG | - | chr3.4:98998433-98998452 | None:intergenic | 50.0% | |
| GTGAAGCCAAACATCCACCA+GGG | - | chr3.4:98997773-98997792 | None:intergenic | 50.0% | |
| GTTGCAAAGGGATGATTCGC+AGG | - | chr3.4:98998469-98998488 | None:intergenic | 50.0% | |
| TAAGTGTGACAGGGGCTAAC+CGG | - | chr3.4:98998318-98998337 | None:intergenic | 50.0% | |
| TGAAGCCAAACATCCACCAG+GGG | - | chr3.4:98997772-98997791 | None:intergenic | 50.0% | |
| TGTGTGTCTGCGCGTATGTT+TGG | + | chr3.4:98997600-98997619 | MS.gene66830:intron | 50.0% | |
| ! | ATCACTTGCGTTGATGCGTG+TGG | - | chr3.4:98998833-98998852 | None:intergenic | 50.0% |
| ! | CGGCCTGCTGTCTAATTTTG+AGG | - | chr3.4:98999386-98999405 | None:intergenic | 50.0% |
| ! | GCGTCCCACAGTTTTCCTTA+AGG | + | chr3.4:98998393-98998412 | MS.gene66830:CDS | 50.0% |
| !!! | GGATTTGGGGGTTTGGCTTT+TGG | + | chr3.4:98998706-98998725 | MS.gene66830:intron | 50.0% |
| !!! | GGGGTTTGGCTTTTGGCTTT+TGG | + | chr3.4:98998713-98998732 | MS.gene66830:intron | 50.0% |
| AACAGGCGGTTCACCAGAGA+AGG | + | chr3.4:98998347-98998366 | MS.gene66830:CDS | 55.0% | |
| ACGCACGTGATCTCCTTCTC+TGG | - | chr3.4:98998363-98998382 | None:intergenic | 55.0% | |
| CACCTCTACAGATATCGGCG+AGG | + | chr3.4:98998489-98998508 | MS.gene66830:CDS | 55.0% | |
| CCAGGGGAATCGGGTAAAAG+TGG | - | chr3.4:98997756-98997775 | None:intergenic | 55.0% | |
| CGGGTAAAAGTGGGTCACCA+GGG | - | chr3.4:98997746-98997765 | None:intergenic | 55.0% | |
| CGTGAGGCTAACCTTATCCC+TGG | + | chr3.4:98997726-98997745 | MS.gene66830:intron | 55.0% | |
| CTCGCCGATATCTGTAGAGG+TGG | - | chr3.4:98998491-98998510 | None:intergenic | 55.0% | |
| GAGAGACCATTCGACTCCCA+TGG | + | chr3.4:98999301-98999320 | MS.gene66830:CDS | 55.0% | |
| GGAGATCACGTGCGTATCAG+TGG | + | chr3.4:98998368-98998387 | MS.gene66830:CDS | 55.0% | |
| GGGCTTCAAGCTTTCTCTGC+AGG | - | chr3.4:98998582-98998601 | None:intergenic | 55.0% | |
| GTCCTCGCCGATATCTGTAG+AGG | - | chr3.4:98998494-98998513 | None:intergenic | 55.0% | |
| TCGGGTAAAAGTGGGTCACC+AGG | - | chr3.4:98997747-98997766 | None:intergenic | 55.0% | |
| ! | CGATTCCCCTGGTGGATGTT+TGG | + | chr3.4:98997764-98997783 | MS.gene66830:intron | 55.0% |
| ! | CTTTTACCCGATTCCCCTGG+TGG | + | chr3.4:98997756-98997775 | MS.gene66830:intron | 55.0% |
| !! | CCACTTTTACCCGATTCCCC+TGG | + | chr3.4:98997753-98997772 | MS.gene66830:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 98997189 | 98999459 | 98997189 | ID=MS.gene66830 |
| chr3.4 | mRNA | 98997189 | 98999459 | 98997189 | ID=MS.gene66830.t1;Parent=MS.gene66830 |
| chr3.4 | exon | 98997189 | 98997203 | 98997189 | ID=MS.gene66830.t1.exon1;Parent=MS.gene66830.t1 |
| chr3.4 | CDS | 98997189 | 98997203 | 98997189 | ID=cds.MS.gene66830.t1;Parent=MS.gene66830.t1 |
| chr3.4 | exon | 98997299 | 98997465 | 98997299 | ID=MS.gene66830.t1.exon2;Parent=MS.gene66830.t1 |
| chr3.4 | CDS | 98997299 | 98997465 | 98997299 | ID=cds.MS.gene66830.t1;Parent=MS.gene66830.t1 |
| chr3.4 | exon | 98998222 | 98998609 | 98998222 | ID=MS.gene66830.t1.exon3;Parent=MS.gene66830.t1 |
| chr3.4 | CDS | 98998222 | 98998609 | 98998222 | ID=cds.MS.gene66830.t1;Parent=MS.gene66830.t1 |
| chr3.4 | exon | 98999250 | 98999459 | 98999250 | ID=MS.gene66830.t1.exon4;Parent=MS.gene66830.t1 |
| chr3.4 | CDS | 98999250 | 98999459 | 98999250 | ID=cds.MS.gene66830.t1;Parent=MS.gene66830.t1 |
| Gene Sequence |
| Protein sequence |
