AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene054642


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054642.t1 MTR_3g101670 98.876 267 3 0 1 267 1 267 0.0 538
MS.gene054642.t1 MTR_3g435460 50.476 210 96 4 57 266 52 253 4.84e-66 206
MS.gene054642.t1 MTR_8g023790 49.763 211 101 4 51 259 55 262 5.27e-65 204
MS.gene054642.t1 MTR_5g098785 46.581 234 103 9 45 262 47 274 3.96e-60 192
MS.gene054642.t1 MTR_3g435460 50.259 193 88 4 74 266 8 192 2.24e-59 187
MS.gene054642.t1 MTR_5g098780 44.958 238 112 8 41 262 38 272 2.86e-59 189
MS.gene054642.t1 MTR_2g042720 47.847 209 105 3 57 264 61 266 5.36e-56 181
MS.gene054642.t1 MTR_6g033320 36.752 234 113 7 37 262 32 238 1.41e-40 140
MS.gene054642.t1 MTR_1g026550 39.256 242 106 7 49 264 103 329 3.02e-40 142
MS.gene054642.t1 MTR_2g008610 44.221 199 84 6 58 235 57 249 7.75e-40 139
MS.gene054642.t1 MTR_5g097280 41.146 192 99 4 68 253 66 249 5.89e-36 129
MS.gene054642.t1 MTR_4g094605 40.206 194 102 5 66 253 65 250 3.82e-35 127
MS.gene054642.t1 MTR_6g011870 38.916 203 92 6 66 253 64 249 1.25e-34 125
MS.gene054642.t1 MTR_6g011880 38.916 203 92 6 66 253 64 249 1.26e-34 125
MS.gene054642.t1 MTR_4g015570 33.333 264 98 5 55 265 51 289 1.42e-34 126
MS.gene054642.t1 MTR_6g060175 37.383 214 96 7 68 265 91 282 1.56e-34 126
MS.gene054642.t1 MTR_6g011890 38.916 203 92 6 66 253 64 249 2.51e-34 125
MS.gene054642.t1 MTR_6g012080 37.931 203 94 6 66 253 64 249 1.04e-33 123
MS.gene054642.t1 MTR_6g012110 37.931 203 94 6 66 253 64 249 1.60e-33 122
MS.gene054642.t1 MTR_2g081090 38.119 202 93 6 68 253 36 221 8.95e-32 117
MS.gene054642.t1 MTR_2g081090 37.624 202 94 5 68 253 63 248 1.23e-31 118
MS.gene054642.t1 MTR_5g098770 60.465 86 33 1 178 262 6 91 2.59e-29 107
MS.gene054642.t1 MTR_6g060175 35.047 214 91 8 68 265 91 272 2.87e-28 109
MS.gene054642.t1 MTR_6g043600 34.737 190 98 5 66 253 48 213 3.54e-26 102
MS.gene054642.t1 MTR_3g070340 30.303 231 95 4 60 243 59 270 2.04e-22 94.0
MS.gene054642.t1 MTR_2g436960 56.000 75 28 2 189 263 30 99 3.50e-18 78.2
MS.gene054642.t1 MTR_1g026550 41.237 97 52 2 49 140 103 199 7.03e-15 72.4
MS.gene054642.t1 MTR_0003s0060 47.368 76 35 2 191 266 25 95 6.93e-14 66.2
MS.gene054642.t1 MTR_6g074140 57.692 52 22 0 212 263 50 101 3.74e-12 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054642.t1 AT1G45474 77.826 230 44 2 39 267 33 256 2.53e-130 369
MS.gene054642.t1 AT1G45474 77.826 230 44 2 39 267 33 256 2.53e-130 369
MS.gene054642.t1 AT3G61470 48.131 214 107 3 50 262 44 254 1.96e-63 199
MS.gene054642.t1 AT3G47470 44.000 250 124 5 21 262 9 250 2.78e-63 199
MS.gene054642.t1 AT1G61520 45.106 235 106 9 44 262 43 270 7.38e-58 186
MS.gene054642.t1 AT1G61520 45.106 235 106 9 44 262 43 270 7.38e-58 186
MS.gene054642.t1 AT1G19150 44.976 209 111 3 57 264 64 269 1.73e-55 180
MS.gene054642.t1 AT1G61520 46.341 205 91 8 74 262 14 215 6.09e-52 169
MS.gene054642.t1 AT1G15820 44.976 209 80 8 52 235 48 246 1.27e-41 144
MS.gene054642.t1 AT3G54890 39.806 206 96 6 61 258 48 233 8.75e-39 135
MS.gene054642.t1 AT1G76570 37.607 234 106 7 56 264 109 327 9.88e-38 135
MS.gene054642.t1 AT4G10340 37.129 202 117 4 68 267 82 275 5.58e-36 129
MS.gene054642.t1 AT2G05100 35.294 255 135 7 21 253 3 249 7.88e-36 129
MS.gene054642.t1 AT2G05070 35.294 255 135 7 21 253 3 249 1.09e-35 128
MS.gene054642.t1 AT2G34430 40.722 194 102 4 66 253 64 250 1.56e-35 128
MS.gene054642.t1 AT3G27690 35.606 264 144 7 2 253 1 250 1.70e-35 128
MS.gene054642.t1 AT2G34420 40.722 194 102 4 66 253 63 249 1.88e-35 128
MS.gene054642.t1 AT3G27690 35.606 264 144 7 2 253 33 282 3.43e-35 128
MS.gene054642.t1 AT3G08940 32.963 270 103 6 49 265 43 287 9.83e-35 126
MS.gene054642.t1 AT1G29920 40.722 194 102 4 66 253 65 251 1.62e-34 125
MS.gene054642.t1 AT1G29910 40.722 194 102 4 66 253 65 251 1.62e-34 125
MS.gene054642.t1 AT1G29930 40.722 194 102 4 66 253 65 251 1.62e-34 125
MS.gene054642.t1 AT5G01530 33.206 262 97 5 57 265 54 290 2.12e-33 123
MS.gene054642.t1 AT5G54270 37.255 204 92 5 68 253 64 249 1.37e-32 120
MS.gene054642.t1 AT3G54890 37.811 201 73 6 61 258 48 199 1.70e-29 110
MS.gene054642.t1 AT2G05100 32.714 269 150 8 21 266 3 263 3.34e-29 112
MS.gene054642.t1 AT3G54890 37.870 169 78 5 61 222 48 196 1.01e-25 101
MS.gene054642.t1 AT2G40100 29.630 243 92 7 57 246 55 271 9.73e-20 86.7
MS.gene054642.t1 AT3G54890 61.667 60 23 0 61 120 48 107 2.24e-18 80.5
MS.gene054642.t1 AT5G28450 43.434 99 53 2 162 259 71 167 5.92e-16 73.9

Find 75 sgRNAs with CRISPR-Local

Find 124 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAGTCTGCCTGGAGATTT+TGG 0.083031 3.4:-89527765 MS.gene054642:intron
GCTAAAGAGGGTTCCTTCTT+TGG 0.210992 3.4:-89527045 MS.gene054642:CDS
ACATACCACTTTAAGCTTTC+AGG 0.257681 3.4:+89527714 None:intergenic
CTTTGCAATGCTTGGAGTCT+TGG 0.296257 3.4:-89527667 MS.gene054642:CDS
CGTTGTTCAACTACTCTTGA+TGG 0.331931 3.4:-89527222 MS.gene054642:CDS
TGGCTCAGGCCTGCTGCTGC+AGG 0.332089 3.4:-89527986 MS.gene054642:CDS
GAGTTAATAGCATACCAATT+TGG 0.344802 3.4:-89527295 MS.gene054642:CDS
TTAAAGAATGTTGCTGGAAA+TGG 0.353609 3.4:+89528053 None:intergenic
AGGCCTGCTGCTGCAGGAAC+GGG 0.357983 3.4:-89527980 MS.gene054642:CDS
CATTCTCGCTTTGCAATGCT+TGG 0.365225 3.4:-89527675 MS.gene054642:CDS
CCCTCTTTAGCTTGAGATCC+AGG 0.372198 3.4:+89527057 None:intergenic
GCACCAGCTTCAAACCAAAT+TGG 0.375590 3.4:+89527281 None:intergenic
TTTGCAATGCTTGGAGTCTT+GGG 0.379571 3.4:-89527666 MS.gene054642:CDS
CAGGCCTGCTGCTGCAGGAA+CGG 0.383245 3.4:-89527981 MS.gene054642:CDS
GGGTTCCTTCTTTGGATTGG+AGG 0.390165 3.4:-89527037 MS.gene054642:CDS
ACAGGTATGCTGAAACAAAA+AGG 0.395693 3.4:-89527098 MS.gene054642:intron
GGATTGGAGGCTTCACTTGG+AGG 0.408465 3.4:-89527024 MS.gene054642:CDS
CAGTGGTGTCCTGCTGTTGA+AGG 0.408562 3.4:+89528007 None:intergenic
TTAATCAACAGCAATGTCAT+TGG 0.423067 3.4:-89528034 MS.gene054642:CDS
AGAGGGTTCCTTCTTTGGAT+TGG 0.425551 3.4:-89527040 MS.gene054642:CDS
TTTGGATTGGAGGCTTCACT+TGG 0.427397 3.4:-89527027 MS.gene054642:CDS
CAGCAGCAGGCCTGAGCCAG+TGG 0.431308 3.4:+89527990 None:intergenic
TGTTGATTAAAGAATGTTGC+TGG 0.432156 3.4:+89528047 None:intergenic
CTTGCAATGGTAGCAATACT+TGG 0.449516 3.4:-89526682 MS.gene054642:CDS
TCACTTGGAGGCTTAGAGCC+AGG 0.454641 3.4:-89527012 MS.gene054642:CDS
GGTCCTCTGCTAAATCCTCT+TGG 0.466721 3.4:-89526853 MS.gene054642:CDS
ACAGCGACCCACATGGCTCC+CGG 0.470053 3.4:-89527918 MS.gene054642:CDS
CAGCAGGACACCACTGGCTC+AGG 0.472502 3.4:-89528000 MS.gene054642:CDS
GTTGTTCAACTACTCTTGAT+GGG 0.474147 3.4:-89527221 MS.gene054642:CDS
ACATTAAAAGTGCTCGTGAA+TGG 0.476630 3.4:-89526819 MS.gene054642:CDS
ACGTTCCATCAAGATAGGTC+GGG 0.483613 3.4:+89527885 None:intergenic
ACTCCCGTTCCTGCAGCAGC+AGG 0.483851 3.4:+89527977 None:intergenic
TGCTCCACAAGGTTATCAAT+TGG 0.488850 3.4:+89526625 None:intergenic
GGGTTCGACCCACTTGGACT+TGG 0.499119 3.4:-89527744 MS.gene054642:CDS
TCCTGGATCTCAAGCTAAAG+AGG 0.502469 3.4:-89527058 MS.gene054642:CDS
ATACCAATTTGGTTTGAAGC+TGG 0.510579 3.4:-89527284 MS.gene054642:CDS
GTGGTATGTGCAAGCAGAGT+TGG 0.513095 3.4:-89527700 MS.gene054642:CDS
ATCAAGTCCCGGGAGCCATG+TGG 0.514514 3.4:+89527910 None:intergenic
TTTCAACAAATAGGTACCCT+GGG 0.517399 3.4:-89526876 MS.gene054642:intron
ATGCAGCTACTTCGCGTCGC+AGG 0.521060 3.4:-89527317 MS.gene054642:intron
CACTTGGAGGCTTAGAGCCA+GGG 0.521376 3.4:-89527011 MS.gene054642:intron
CAGCGACCCACATGGCTCCC+GGG 0.535164 3.4:-89527917 MS.gene054642:CDS
TCAAGTCCCGGGAGCCATGT+GGG 0.535885 3.4:+89527911 None:intergenic
ACTAAGAACTAGAACTTGCA+AGG 0.536025 3.4:+89526566 None:intergenic
TACGTTCCATCAAGATAGGT+CGG 0.542041 3.4:+89527884 None:intergenic
GGGTCGAACCCAAAATCTCC+AGG 0.547605 3.4:+89527756 None:intergenic
CGTTCCATCAAGATAGGTCG+GGG 0.549545 3.4:+89527886 None:intergenic
GGCTTACGTTCCATCAAGAT+AGG 0.552815 3.4:+89527880 None:intergenic
AAGCTTAAAGAGATCAAGAA+TGG 0.555296 3.4:-89526796 MS.gene054642:intron
CTTCAACAGCAGGACACCAC+TGG 0.557036 3.4:-89528006 MS.gene054642:CDS
TGAAGCCTCCAATCCAAAGA+AGG 0.557622 3.4:+89527032 None:intergenic
GTTTCAACAAATAGGTACCC+TGG 0.560016 3.4:-89526877 MS.gene054642:intron
TGGAGCATCTCTCAAATCCA+TGG 0.566001 3.4:-89526609 MS.gene054642:CDS
TGTTACAGGGCGACTTGCAA+TGG 0.566623 3.4:-89526695 MS.gene054642:intron
ATTGGTAAACCTTCAACAGC+AGG 0.584446 3.4:-89528016 MS.gene054642:CDS
CAGCACAACAGCGACCCACA+TGG 0.585644 3.4:-89527925 MS.gene054642:CDS
CCTGGATCTCAAGCTAAAGA+GGG 0.589518 3.4:-89527057 MS.gene054642:CDS
CGACCCACTTGGACTTGGAG+AGG 0.600286 3.4:-89527739 MS.gene054642:CDS
CAAGCTTCAGTGACTCATGT+TGG 0.608285 3.4:-89526649 MS.gene054642:CDS
AAATACGAGTTTGCCAACAC+AGG 0.611621 3.4:-89527254 MS.gene054642:CDS
AGGATCCTGAAAGCTTAAAG+TGG 0.613738 3.4:-89527719 MS.gene054642:CDS
TTGTTCAACTACTCTTGATG+GGG 0.618405 3.4:-89527220 MS.gene054642:intron
AATACGAGTTTGCCAACACA+GGG 0.621022 3.4:-89527253 MS.gene054642:CDS
AACGACGAGTGTCCCTGTGT+TGG 0.634037 3.4:+89527241 None:intergenic
CTAAGAACTAGAACTTGCAA+GGG 0.646168 3.4:+89526567 None:intergenic
GCACAAATTTGTTTATAACG+TGG 0.647469 3.4:+89527950 None:intergenic
ATGTCTTTAGCTAGGCCAAG+AGG 0.649507 3.4:+89526838 None:intergenic
GGATCCTCTCCAAGTCCAAG+TGG 0.657850 3.4:+89527735 None:intergenic
GATTTGAGAGATGCTCCACA+AGG 0.672076 3.4:+89526614 None:intergenic
TGGACCAATTGATAACCTTG+TGG 0.673898 3.4:-89526629 MS.gene054642:CDS
GATCCTCTCCAAGTCCAAGT+GGG 0.674722 3.4:+89527736 None:intergenic
AGGCCAAGAGGATTTAGCAG+AGG 0.679125 3.4:+89526850 None:intergenic
TTCAACAAATAGGTACCCTG+GGG 0.698699 3.4:-89526875 MS.gene054642:intron
GTTCCATCAAGATAGGTCGG+GGG 0.742215 3.4:+89527887 None:intergenic
TCAACAAATAGGTACCCTGG+GGG 0.781200 3.4:-89526874 MS.gene054642:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACTTTGATTATATATATG+CGG + chr3.4:89527122-89527141 None:intergenic 15.0%
!!! ATAATCAAAGTTTTGAATAA+AGG - chr3.4:89527129-89527148 MS.gene054642:intron 15.0%
!!! TATGTTTTCTATATCATTAT+AGG - chr3.4:89527504-89527523 MS.gene054642:intron 15.0%
!! ATGAAGAAAAAAGAAAAACA+CGG + chr3.4:89527718-89527737 None:intergenic 20.0%
!!! AACATAATGGTTTTATATTG+AGG - chr3.4:89527180-89527199 MS.gene054642:intron 20.0%
!!! ATAATCTTGTTTCAACAAAT+AGG - chr3.4:89527767-89527786 MS.gene054642:intron 20.0%
!!! ATTTAAAATCATGTATACGA+TGG - chr3.4:89527283-89527302 MS.gene054642:CDS 20.0%
!!! GTATACATGATTTTAAATAG+CGG + chr3.4:89527281-89527300 None:intergenic 20.0%
! CTCAATATAAAAAACGTTAC+TGG + chr3.4:89527072-89527091 None:intergenic 25.0%
! TCAAGTTATAGTAACGTTAA+GGG - chr3.4:89526857-89526876 MS.gene054642:CDS 25.0%
! TTGCAAATATTCTTGTTACA+GGG - chr3.4:89527944-89527963 MS.gene054642:CDS 25.0%
!! CATAGATTGATAACAAGTTT+AGG + chr3.4:89527318-89527337 None:intergenic 25.0%
!! TTCAAGTTATAGTAACGTTA+AGG - chr3.4:89526856-89526875 MS.gene054642:CDS 25.0%
!!! TAATGGTTTTATATTGAGGT+TGG - chr3.4:89527184-89527203 MS.gene054642:intron 25.0%
!!! TGAATAATAGTTTTATGCCA+TGG + chr3.4:89528063-89528082 None:intergenic 25.0%
!!! TGGCATTTTAAGATGAATTT+AGG + chr3.4:89526822-89526841 None:intergenic 25.0%
AAGCTTAAAGAGATCAAGAA+TGG - chr3.4:89527856-89527875 MS.gene054642:intron 30.0%
GAGTTAATAGCATACCAATT+TGG - chr3.4:89527357-89527376 MS.gene054642:intron 30.0%
GTTGCAAATATTCTTGTTAC+AGG - chr3.4:89527943-89527962 MS.gene054642:CDS 30.0%
TGATCTAAACTGCAACATAA+TGG - chr3.4:89527167-89527186 MS.gene054642:intron 30.0%
TTAAAGAATGTTGCTGGAAA+TGG + chr3.4:89526602-89526621 None:intergenic 30.0%
TTAATCAACAGCAATGTCAT+TGG - chr3.4:89526618-89526637 MS.gene054642:CDS 30.0%
TTATTAACTTTCACTTGCAC+AGG - chr3.4:89527536-89527555 MS.gene054642:intron 30.0%
! CACTTTTAATGTCTTTAGCT+AGG + chr3.4:89527825-89527844 None:intergenic 30.0%
! GCACAAATTTGTTTATAACG+TGG + chr3.4:89526705-89526724 None:intergenic 30.0%
! GTTTTATATTGAGGTTGGAT+TGG - chr3.4:89527189-89527208 MS.gene054642:intron 30.0%
! TGTTGATTAAAGAATGTTGC+TGG + chr3.4:89526608-89526627 None:intergenic 30.0%
ACAGGTATGCTGAAACAAAA+AGG - chr3.4:89527554-89527573 MS.gene054642:intron 35.0%
ACATACCACTTTAAGCTTTC+AGG + chr3.4:89526941-89526960 None:intergenic 35.0%
CTAAGAACTAGAACTTGCAA+GGG + chr3.4:89528088-89528107 None:intergenic 35.0%
GTTGTTCAACTACTCTTGAT+GGG - chr3.4:89527431-89527450 MS.gene054642:intron 35.0%
TCACAATTGTAAGCTAGTTG+AGG - chr3.4:89527741-89527760 MS.gene054642:CDS 35.0%
TGCAACTATGAAAACAAGCT+TGG + chr3.4:89527929-89527948 None:intergenic 35.0%
TTGTTCAACTACTCTTGATG+GGG - chr3.4:89527432-89527451 MS.gene054642:intron 35.0%
TTTCAACAAATAGGTACCCT+GGG - chr3.4:89527776-89527795 MS.gene054642:intron 35.0%
! TACATGGATTTTGTTAGTCC+TGG - chr3.4:89527577-89527596 MS.gene054642:intron 35.0%
! TGCTGAAACAAAAAGGTACA+TGG - chr3.4:89527561-89527580 MS.gene054642:intron 35.0%
!! ACATTAAAAGTGCTCGTGAA+TGG - chr3.4:89527833-89527852 MS.gene054642:intron 35.0%
!! ATACCAATTTGGTTTGAAGC+TGG - chr3.4:89527368-89527387 MS.gene054642:intron 35.0%
AAATACGAGTTTGCCAACAC+AGG - chr3.4:89527398-89527417 MS.gene054642:intron 40.0%
AATACGAGTTTGCCAACACA+GGG - chr3.4:89527399-89527418 MS.gene054642:intron 40.0%
AGGATCCTGAAAGCTTAAAG+TGG - chr3.4:89526933-89526952 MS.gene054642:intron 40.0%
ATTGGTAAACCTTCAACAGC+AGG - chr3.4:89526636-89526655 MS.gene054642:CDS 40.0%
CGTTGTTCAACTACTCTTGA+TGG - chr3.4:89527430-89527449 MS.gene054642:intron 40.0%
CTTGAAAAGAGAACTAGCAC+TGG + chr3.4:89526842-89526861 None:intergenic 40.0%
CTTGCAATGGTAGCAATACT+TGG - chr3.4:89527970-89527989 MS.gene054642:CDS 40.0%
GTGTGTGTTTGTACGGTTAT+CGG + chr3.4:89527678-89527697 None:intergenic 40.0%
GTTTCAACAAATAGGTACCC+TGG - chr3.4:89527775-89527794 MS.gene054642:intron 40.0%
GTTTGTACGGTTATCGGAAA+TGG + chr3.4:89527672-89527691 None:intergenic 40.0%
TACGTTCCATCAAGATAGGT+CGG + chr3.4:89526771-89526790 None:intergenic 40.0%
TAGAGAATCACAGCCAAACA+TGG + chr3.4:89527215-89527234 None:intergenic 40.0%
TATCGGAAATGGAAATACCC+TGG + chr3.4:89527661-89527680 None:intergenic 40.0%
TCAACTCATCAACCAGAAGT+TGG + chr3.4:89527479-89527498 None:intergenic 40.0%
TGCACAAGTGTGTGTTTGTA+CGG + chr3.4:89527685-89527704 None:intergenic 40.0%
TGCTCCACAAGGTTATCAAT+TGG + chr3.4:89528030-89528049 None:intergenic 40.0%
TTAGGAGTCAAAATGCAGAG+AGG + chr3.4:89526804-89526823 None:intergenic 40.0%
TTCAACAAATAGGTACCCTG+GGG - chr3.4:89527777-89527796 MS.gene054642:intron 40.0%
TTGGCTGTGATTCTCTATCA+AGG - chr3.4:89527218-89527237 MS.gene054642:intron 40.0%
TTTGCAATGCTTGGAGTCTT+GGG - chr3.4:89526986-89527005 MS.gene054642:intron 40.0%
! TGGACCAATTGATAACCTTG+TGG - chr3.4:89528023-89528042 MS.gene054642:CDS 40.0%
! TTAGATCATCGTAGCTTTGC+AGG + chr3.4:89527155-89527174 None:intergenic 40.0%
!! TGGGGTAGGATTTTAATCAC+TGG - chr3.4:89527450-89527469 MS.gene054642:intron 40.0%
AATCTCCAGGCAGACTGAAA+AGG + chr3.4:89526886-89526905 None:intergenic 45.0%
ACGTTCCATCAAGATAGGTC+GGG + chr3.4:89526770-89526789 None:intergenic 45.0%
AGAGGGTTCCTTCTTTGGAT+TGG - chr3.4:89527612-89527631 MS.gene054642:intron 45.0%
ATGTCTTTAGCTAGGCCAAG+AGG + chr3.4:89527817-89527836 None:intergenic 45.0%
CAAGCTTCAGTGACTCATGT+TGG - chr3.4:89528003-89528022 MS.gene054642:CDS 45.0%
CATTCTCGCTTTGCAATGCT+TGG - chr3.4:89526977-89526996 MS.gene054642:intron 45.0%
CCTGGATCTCAAGCTAAAGA+GGG - chr3.4:89527595-89527614 MS.gene054642:intron 45.0%
CTTTGCAATGCTTGGAGTCT+TGG - chr3.4:89526985-89527004 MS.gene054642:intron 45.0%
GATTTGAGAGATGCTCCACA+AGG + chr3.4:89528041-89528060 None:intergenic 45.0%
GCACCAGCTTCAAACCAAAT+TGG + chr3.4:89527374-89527393 None:intergenic 45.0%
GCTAAAGAGGGTTCCTTCTT+TGG - chr3.4:89527607-89527626 MS.gene054642:intron 45.0%
GGCTTACGTTCCATCAAGAT+AGG + chr3.4:89526775-89526794 None:intergenic 45.0%
TCAACAAATAGGTACCCTGG+GGG - chr3.4:89527778-89527797 MS.gene054642:intron 45.0%
TCAACTACTCTTGATGGGGT+AGG - chr3.4:89527436-89527455 MS.gene054642:intron 45.0%
TCCTGGATCTCAAGCTAAAG+AGG - chr3.4:89527594-89527613 MS.gene054642:intron 45.0%
TGAAGCCTCCAATCCAAAGA+AGG + chr3.4:89527623-89527642 None:intergenic 45.0%
! CAAAATGCAGAGAGGCGTAA+GGG + chr3.4:89526796-89526815 None:intergenic 45.0%
! TCAAAATGCAGAGAGGCGTA+AGG + chr3.4:89526797-89526816 None:intergenic 45.0%
! TCAGTCTGCCTGGAGATTTT+GGG - chr3.4:89526888-89526907 MS.gene054642:intron 45.0%
! TGGAGCATCTCTCAAATCCA+TGG - chr3.4:89528043-89528062 MS.gene054642:CDS 45.0%
! TTCAGTCTGCCTGGAGATTT+TGG - chr3.4:89526887-89526906 MS.gene054642:intron 45.0%
! TTTGGATTGGAGGCTTCACT+TGG - chr3.4:89527625-89527644 MS.gene054642:intron 45.0%
!! AATCACTGGCTTCCAACTTC+TGG - chr3.4:89527464-89527483 MS.gene054642:intron 45.0%
AGGCCAAGAGGATTTAGCAG+AGG + chr3.4:89527805-89527824 None:intergenic 50.0%
CGTTCCATCAAGATAGGTCG+GGG + chr3.4:89526769-89526788 None:intergenic 50.0%
GATCCTCTCCAAGTCCAAGT+GGG + chr3.4:89526919-89526938 None:intergenic 50.0%
GGTCCTCTGCTAAATCCTCT+TGG - chr3.4:89527799-89527818 MS.gene054642:intron 50.0%
GTGGTATGTGCAAGCAGAGT+TGG - chr3.4:89526952-89526971 MS.gene054642:intron 50.0%
GTTCCATCAAGATAGGTCGG+GGG + chr3.4:89526768-89526787 None:intergenic 50.0%
TGTTACAGGGCGACTTGCAA+TGG - chr3.4:89527957-89527976 MS.gene054642:CDS 50.0%
! GGGTTCCTTCTTTGGATTGG+AGG - chr3.4:89527615-89527634 MS.gene054642:intron 50.0%
! GGTAACCTTTTCAGTCTGCC+TGG - chr3.4:89526878-89526897 MS.gene054642:intron 50.0%
!! CCCTCTTTAGCTTGAGATCC+AGG + chr3.4:89527598-89527617 None:intergenic 50.0%
!! GAGGTTGGATTGGCCATGTT+TGG - chr3.4:89527199-89527218 MS.gene054642:intron 50.0%
!!! GATTTTGGGTTCGACCCACT+TGG - chr3.4:89526902-89526921 MS.gene054642:intron 50.0%
AACGACGAGTGTCCCTGTGT+TGG + chr3.4:89527414-89527433 None:intergenic 55.0%
CACTTGGAGGCTTAGAGCCA+GGG - chr3.4:89527641-89527660 MS.gene054642:intron 55.0%
CAGTGGTGTCCTGCTGTTGA+AGG + chr3.4:89526648-89526667 None:intergenic 55.0%
CTTCAACAGCAGGACACCAC+TGG - chr3.4:89526646-89526665 MS.gene054642:CDS 55.0%
GATCCCCCGACCTATCTTGA+TGG - chr3.4:89526762-89526781 MS.gene054642:intron 55.0%
GATTTAGCAGAGGACCCCCA+GGG + chr3.4:89527795-89527814 None:intergenic 55.0%
GGATCCTCTCCAAGTCCAAG+TGG + chr3.4:89526920-89526939 None:intergenic 55.0%
GGATTGGAGGCTTCACTTGG+AGG - chr3.4:89527628-89527647 MS.gene054642:intron 55.0%
GGGTCGAACCCAAAATCTCC+AGG + chr3.4:89526899-89526918 None:intergenic 55.0%
TCACTTGGAGGCTTAGAGCC+AGG - chr3.4:89527640-89527659 MS.gene054642:intron 55.0%
ATCAAGTCCCGGGAGCCATG+TGG + chr3.4:89526745-89526764 None:intergenic 60.0%
ATGCAGCTACTTCGCGTCGC+AGG - chr3.4:89527335-89527354 MS.gene054642:intron 60.0%
CAGCACAACAGCGACCCACA+TGG - chr3.4:89526727-89526746 MS.gene054642:intron 60.0%
CGACCCACTTGGACTTGGAG+AGG - chr3.4:89526913-89526932 MS.gene054642:intron 60.0%
GGATTTAGCAGAGGACCCCC+AGG + chr3.4:89527796-89527815 None:intergenic 60.0%
GGGTTCGACCCACTTGGACT+TGG - chr3.4:89526908-89526927 MS.gene054642:intron 60.0%
TAGGTCGGGGGATCAAGTCC+CGG + chr3.4:89526756-89526775 None:intergenic 60.0%
TCAAGTCCCGGGAGCCATGT+GGG + chr3.4:89526744-89526763 None:intergenic 60.0%
ACAGCGACCCACATGGCTCC+CGG - chr3.4:89526734-89526753 MS.gene054642:intron 65.0%
ACTCCCGTTCCTGCAGCAGC+AGG + chr3.4:89526678-89526697 None:intergenic 65.0%
AGGCCTGCTGCTGCAGGAAC+GGG - chr3.4:89526672-89526691 MS.gene054642:CDS 65.0%
AGGTCGGGGGATCAAGTCCC+GGG + chr3.4:89526755-89526774 None:intergenic 65.0%
CAGGCCTGCTGCTGCAGGAA+CGG - chr3.4:89526671-89526690 MS.gene054642:CDS 65.0%
!! CAGCAGGACACCACTGGCTC+AGG - chr3.4:89526652-89526671 MS.gene054642:CDS 65.0%
CAGCAGCAGGCCTGAGCCAG+TGG + chr3.4:89526665-89526684 None:intergenic 70.0%
CAGCGACCCACATGGCTCCC+GGG - chr3.4:89526735-89526754 MS.gene054642:intron 70.0%
TGGCTCAGGCCTGCTGCTGC+AGG - chr3.4:89526666-89526685 MS.gene054642:CDS 70.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 89526567 89528107 89526567 ID=MS.gene054642
chr3.4 mRNA 89526567 89528107 89526567 ID=MS.gene054642.t1;Parent=MS.gene054642
chr3.4 exon 89527887 89528107 89527887 ID=MS.gene054642.t1.exon1;Parent=MS.gene054642.t1
chr3.4 CDS 89527887 89528107 89527887 ID=cds.MS.gene054642.t1;Parent=MS.gene054642.t1
chr3.4 exon 89527650 89527782 89527650 ID=MS.gene054642.t1.exon2;Parent=MS.gene054642.t1
chr3.4 CDS 89527650 89527782 89527650 ID=cds.MS.gene054642.t1;Parent=MS.gene054642.t1
chr3.4 exon 89527221 89527333 89527221 ID=MS.gene054642.t1.exon3;Parent=MS.gene054642.t1
chr3.4 CDS 89527221 89527333 89527221 ID=cds.MS.gene054642.t1;Parent=MS.gene054642.t1
chr3.4 exon 89527012 89527116 89527012 ID=MS.gene054642.t1.exon4;Parent=MS.gene054642.t1
chr3.4 CDS 89527012 89527116 89527012 ID=cds.MS.gene054642.t1;Parent=MS.gene054642.t1
chr3.4 exon 89526797 89526885 89526797 ID=MS.gene054642.t1.exon5;Parent=MS.gene054642.t1
chr3.4 CDS 89526797 89526885 89526797 ID=cds.MS.gene054642.t1;Parent=MS.gene054642.t1
chr3.4 exon 89526567 89526709 89526567 ID=MS.gene054642.t1.exon6;Parent=MS.gene054642.t1
chr3.4 CDS 89526567 89526709 89526567 ID=cds.MS.gene054642.t1;Parent=MS.gene054642.t1
Gene Sequence

>MS.gene054642

ATGGTTGCACTTGCAGCAATAGCAAGAAGCTTCCATTTCCAGCAACATTCTTTAATCAACAGCAATGTCATTGGTAAACCTTCAACAGCAGGACACCACTGGCTCAGGCCTGCTGCTGCAGGAACGGGAGTCACTCCACGTTATAAACAAATTTGTGCTGCAGCACAACAGCGACCCACATGGCTCCCGGGACTTGATCCCCCGACCTATCTTGATGGAACGTAAGCCCTTACGCCTCTCTGCATTTTGACTCCTAAATTCATCTTAAAATGCCAGTGCTAGTTCTCTTTTCAAGTTATAGTAACGTTAAGGGTAACCTTTTCAGTCTGCCTGGAGATTTTGGGTTCGACCCACTTGGACTTGGAGAGGATCCTGAAAGCTTAAAGTGGTATGTGCAAGCAGAGTTGGTTCATTCTCGCTTTGCAATGCTTGGAGTCTTGGGAATTTTAGTCACAGATGTGAGTCACGCAACTCTTAACATAATTTTTCACATTTCATAATTCCAGTAACGTTTTTTATATTGAGAGAAGCTTTACTATTAAAACACACGCGCCGCATATATATAATCAAAGTTTTGAATAAAGGCCTGCAAAGCTACGATGATCTAAACTGCAACATAATGGTTTTATATTGAGGTTGGATTGGCCATGTTTGGCTGTGATTCTCTATCAAGGATCGCGAGACAGCTGTAACTGTATCACAAGTTCACAACCGCTATTTAAAATCATGTATACGATGGACATTTCATCCTAAACTTGTTATCAATCTATGCAGCTACTTCGCGTCGCAGGAGTTAATAGCATACCAATTTGGTTTGAAGCTGGTGCAGTAAAATACGAGTTTGCCAACACAGGGACACTCGTCGTTGTTCAACTACTCTTGATGGGGTAGGATTTTAATCACTGGCTTCCAACTTCTGGTTGATGAGTTGAGCTTCTATGTTTTCTATATCATTATAGGACATGTGATTTATTAACTTTCACTTGCACAGGTATGCTGAAACAAAAAGGTACATGGATTTTGTTAGTCCTGGATCTCAAGCTAAAGAGGGTTCCTTCTTTGGATTGGAGGCTTCACTTGGAGGCTTAGAGCCAGGGTATTTCCATTTCCGATAACCGTACAAACACACACTTGTGCACACTTTTGAGCCGTGTTTTTCTTTTTTCTTCATTATTCACAATTGTAAGCTAGTTGAGGTATATAATCTTGTTTCAACAAATAGGTACCCTGGGGGTCCTCTGCTAAATCCTCTTGGCCTAGCTAAAGACATTAAAAGTGCTCGTGAATGGAAGCTTAAAGAGATCAAGAATGGTATATTTTTTCTCAGTTTTTCATTCTTTGTCTGTTAATTCATAATCTCCAAGCTTGTTTTCATAGTTGCAAATATTCTTGTTACAGGGCGACTTGCAATGGTAGCAATACTTGGTATCTTTGTACAAGCTTCAGTGACTCATGTTGGACCAATTGATAACCTTGTGGAGCATCTCTCAAATCCATGGCATAAAACTATTATTCAGACCCTTGCAAGTTCTAGTTCTTAG

Protein sequence

>MS.gene054642.t1

MVALAAIARSFHFQQHSLINSNVIGKPSTAGHHWLRPAAAGTGVTPRYKQICAAAQQRPTWLPGLDPPTYLDGTLPGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVLGILVTDLLRVAGVNSIPIWFEAGAVKYEFANTGTLVVVQLLLMGYAETKRYMDFVSPGSQAKEGSFFGLEASLGGLEPGYPGGPLLNPLGLAKDIKSAREWKLKEIKNGRLAMVAILGIFVQASVTHVGPIDNLVEHLSNPWHKTIIQTLASSSS