Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66893.t1 | XP_013463898.1 | 96.2 | 392 | 14 | 1 | 1 | 391 | 1 | 392 | 2.50E-177 | 631.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66893.t1 | Q5ZMS6 | 34.6 | 191 | 111 | 4 | 17 | 207 | 9 | 185 | 8.8e-22 | 106.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66893.t1 | A0A072V9B3 | 96.2 | 392 | 14 | 1 | 1 | 391 | 1 | 392 | 1.8e-177 | 631.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057034 | MS.gene66893 | 0.800255 | 1.57E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66893.t1 | MTR_2g050180 | 96.796 | 437 | 13 | 1 | 1 | 436 | 1 | 437 | 0.0 | 857 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66893.t1 | AT5G19950 | 42.993 | 421 | 214 | 9 | 4 | 409 | 8 | 417 | 4.94e-94 | 290 |
| MS.gene66893.t1 | AT5G19950 | 42.993 | 421 | 214 | 9 | 4 | 409 | 8 | 417 | 4.94e-94 | 290 |
| MS.gene66893.t1 | AT5G19950 | 42.755 | 421 | 213 | 9 | 4 | 409 | 8 | 415 | 4.47e-93 | 288 |
Find 133 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATACCAACCCTTTCTTCTT+AGG | 0.121710 | 2.3:-37538243 | None:intergenic |
| AAGAAGAAAGGGTTGGTATT+TGG | 0.198744 | 2.3:+37538246 | MS.gene66893:CDS |
| GGAAGAAACCGATGATTTAA+AGG | 0.229203 | 2.3:+37538267 | MS.gene66893:CDS |
| AAATATCTTCTTTCCGATTT+CGG | 0.244488 | 2.3:-37547841 | None:intergenic |
| AAATCGGAAAGAAGATATTT+TGG | 0.248020 | 2.3:+37547844 | MS.gene66893:CDS |
| AGAGGGAGGGGAAGGGGTAG+AGG | 0.255121 | 2.3:+37549487 | MS.gene66893:CDS |
| CCTAAAGCATTGACTGTATT+AGG | 0.268079 | 2.3:+37539612 | MS.gene66893:CDS |
| AGGGGAAGGGGTAGAGGAAG+AGG | 0.271144 | 2.3:+37549493 | MS.gene66893:CDS |
| CCTAATACAGTCAATGCTTT+AGG | 0.274594 | 2.3:-37539612 | None:intergenic |
| AGAGGAAGAGGGAGGGGAAG+GGG | 0.277896 | 2.3:+37549481 | MS.gene66893:CDS |
| GCAAAGGAATCACCTTCTTT+TGG | 0.304615 | 2.3:-37548173 | None:intergenic |
| GAAAACAAACTTAGTAGTTC+AGG | 0.317677 | 2.3:+37547905 | MS.gene66893:CDS |
| AAGCTAGAGGATCGTGATTC+AGG | 0.319089 | 2.3:+37539711 | MS.gene66893:CDS |
| AGGGGTAGAGGAAGAGGGAG+GGG | 0.336283 | 2.3:+37549475 | MS.gene66893:CDS |
| AGGGGTAGAGGAAGAGGGAG+GGG | 0.336283 | 2.3:+37549499 | MS.gene66893:CDS |
| GAAGGGGTAGAGGAAGAGGG+AGG | 0.339415 | 2.3:+37549473 | MS.gene66893:CDS |
| GAAGGGGTAGAGGAAGAGGG+AGG | 0.339415 | 2.3:+37549497 | MS.gene66893:CDS |
| CCATGGACCCAAAGTTCTTC+AGG | 0.341215 | 2.3:+37538435 | MS.gene66893:CDS |
| GAAGACAAGCCTAGTAGTTC+GGG | 0.351843 | 2.3:+37548143 | MS.gene66893:CDS |
| AGAGGAAGGGGTAGAGGAAG+AGG | 0.352804 | 2.3:+37549469 | MS.gene66893:CDS |
| TTACCTGACAATGTTGTTCC+TGG | 0.353424 | 2.3:+37538793 | MS.gene66893:CDS |
| ATTTGAACCTGAAGAACTTT+GGG | 0.357929 | 2.3:-37538442 | None:intergenic |
| AGAGGTAGAGGAAGGGGTAG+AGG | 0.358047 | 2.3:+37549463 | MS.gene66893:CDS |
| AGAACCTCATCATTATTAGA+AGG | 0.359697 | 2.3:-37549157 | None:intergenic |
| AGAAGTGGTAAGCCCATTGC+TGG | 0.359749 | 2.3:+37547776 | MS.gene66893:CDS |
| CTTTCCGATTTCGGTCTTGC+TGG | 0.360863 | 2.3:-37547832 | None:intergenic |
| GGATATCGACCACGCTGATA+TGG | 0.374449 | 2.3:-37549043 | None:intergenic |
| CAATGTTGTTCCTGGTACTA+AGG | 0.388113 | 2.3:+37538801 | MS.gene66893:CDS |
| GTAGAGGAAGAGGGAGGGGA+AGG | 0.393464 | 2.3:+37549479 | MS.gene66893:CDS |
| ATCTGATGATAGCTATCAAA+TGG | 0.397695 | 2.3:+37549429 | MS.gene66893:CDS |
| AATTTGAACCTGAAGAACTT+TGG | 0.397907 | 2.3:-37538443 | None:intergenic |
| AACTTAGTAGTTCAGGGTTA+AGG | 0.406999 | 2.3:+37547912 | MS.gene66893:CDS |
| ATACCAACCCTTTCTTCTTA+GGG | 0.413134 | 2.3:-37538242 | None:intergenic |
| GGAAGAGGAGGAAGAGGTAG+AGG | 0.423317 | 2.3:+37549451 | MS.gene66893:CDS |
| TGAAGACAAGCCTAGTAGTT+CGG | 0.424672 | 2.3:+37548142 | MS.gene66893:CDS |
| ATATCCAGCAAGACCGAAAT+CGG | 0.426444 | 2.3:+37547828 | MS.gene66893:CDS |
| ATTTAACCTCGAACATTCTC+AGG | 0.427187 | 2.3:+37549225 | MS.gene66893:CDS |
| GGAGGAAGAGGTAGAGGAAG+GGG | 0.439587 | 2.3:+37549457 | MS.gene66893:CDS |
| CCTGAAGAACTTTGGGTCCA+TGG | 0.439834 | 2.3:-37538435 | None:intergenic |
| GGCCTTGTCCCCGAACTACT+AGG | 0.439945 | 2.3:-37548152 | None:intergenic |
| TAGAGGAAGAGGGAGGGGAA+GGG | 0.443971 | 2.3:+37549480 | MS.gene66893:CDS |
| TTTCAGCTCGTTCTGGAGGC+GGG | 0.444280 | 2.3:-37547886 | None:intergenic |
| TCCTCCATTTGTGAAGCTGC+AGG | 0.445152 | 2.3:+37539740 | MS.gene66893:CDS |
| AAGGGGTAGAGGAAGAGGGA+GGG | 0.445197 | 2.3:+37549474 | MS.gene66893:CDS |
| AAGGGGTAGAGGAAGAGGGA+GGG | 0.445197 | 2.3:+37549498 | MS.gene66893:CDS |
| AATAGAAACCCTAAGAAGAA+AGG | 0.448103 | 2.3:+37538234 | MS.gene66893:CDS |
| TTGCATTGGACAGATTCGTT+TGG | 0.451626 | 2.3:+37539548 | MS.gene66893:intron |
| CCAACCTGCAGCTTCACAAA+TGG | 0.454450 | 2.3:-37539744 | None:intergenic |
| CGGTCTTGCTGGATATCAGT+TGG | 0.455318 | 2.3:-37547821 | None:intergenic |
| ACTTGGCTCCGATGGATTTG+AGG | 0.457266 | 2.3:-37538372 | None:intergenic |
| GTGTCTTGATTAGGTACAAA+GGG | 0.460261 | 2.3:+37549348 | MS.gene66893:intron |
| GGGGAAGGGGTAGAGGAAGA+GGG | 0.462532 | 2.3:+37549494 | MS.gene66893:CDS |
| CAAGCTATACCACTATGAAC+TGG | 0.462609 | 2.3:-37539582 | None:intergenic |
| GGTACGAAGAAGAGATGGTT+CGG | 0.463509 | 2.3:-37538401 | None:intergenic |
| GAGGAGGAAGAGGTAGAGGA+AGG | 0.464321 | 2.3:+37549455 | MS.gene66893:CDS |
| AGATGGTTCGGGTAAGGACT+TGG | 0.464571 | 2.3:-37538389 | None:intergenic |
| TCCTAGGGGTCGAGGACGTA+GGG | 0.466141 | 2.3:+37549063 | MS.gene66893:CDS |
| AAAACAAACTTAGTAGTTCA+GGG | 0.466850 | 2.3:+37547906 | MS.gene66893:CDS |
| TTCAATCACTATATGAAGAA+TGG | 0.483666 | 2.3:+37539643 | MS.gene66893:CDS |
| GAGGAAGGGGTAGAGGAAGA+GGG | 0.484968 | 2.3:+37549470 | MS.gene66893:CDS |
| GCTCTAATAGCTCCAGCAAT+GGG | 0.486502 | 2.3:-37547788 | None:intergenic |
| GGTCGAGGACGTAGGGGAAA+GGG | 0.488449 | 2.3:+37549070 | MS.gene66893:CDS |
| AGCTCGTTCTGGAGGCGGGA+TGG | 0.491950 | 2.3:-37547882 | None:intergenic |
| GGGTAAGGACTTGGCTCCGA+TGG | 0.492698 | 2.3:-37538380 | None:intergenic |
| AGGAGGAAGAGGTAGAGGAA+GGG | 0.496411 | 2.3:+37549456 | MS.gene66893:CDS |
| GGGTCGAGGACGTAGGGGAA+AGG | 0.496809 | 2.3:+37549069 | MS.gene66893:CDS |
| GGTGTTTGAGTCTGTCGAAT+CGG | 0.500556 | 2.3:+37538333 | MS.gene66893:CDS |
| ATCAGCGTGGTCGATATCCT+AGG | 0.507535 | 2.3:+37549047 | MS.gene66893:CDS |
| GTACCAGGAACAACATTGTC+AGG | 0.509712 | 2.3:-37538796 | None:intergenic |
| GGATGAAGTTGTATTTACTC+TGG | 0.510650 | 2.3:+37549102 | MS.gene66893:CDS |
| CAAATGGGAAGAGGAGGAAG+AGG | 0.510724 | 2.3:+37549445 | MS.gene66893:CDS |
| CGTACCACTTCTTATCTCCA+TGG | 0.510860 | 2.3:+37538418 | MS.gene66893:CDS |
| ATTAGGTACAAAGGGGTCCT+CGG | 0.512191 | 2.3:+37549356 | MS.gene66893:intron |
| ACAGACTCAAACACCTTGGA+AGG | 0.513612 | 2.3:-37538325 | None:intergenic |
| AAGAAGAGATGGTTCGGGTA+AGG | 0.516042 | 2.3:-37538395 | None:intergenic |
| GAGCATGTTCACATACGAAA+AGG | 0.517755 | 2.3:+37549405 | MS.gene66893:CDS |
| TTAGGTACAAAGGGGTCCTC+GGG | 0.517967 | 2.3:+37549357 | MS.gene66893:intron |
| GATTATTGCCTTTAAATCAT+CGG | 0.520323 | 2.3:-37538275 | None:intergenic |
| ATAGAAACCCTAAGAAGAAA+GGG | 0.524040 | 2.3:+37538235 | MS.gene66893:CDS |
| GCAGATTATAACTTTAGAAG+TGG | 0.526692 | 2.3:+37547761 | MS.gene66893:CDS |
| CCATTTGTGAAGCTGCAGGT+TGG | 0.529359 | 2.3:+37539744 | MS.gene66893:CDS |
| TACAGACCTGAGAATGTTCG+AGG | 0.530217 | 2.3:-37549231 | None:intergenic |
| AGCCTAGTAGTTCGGGGACA+AGG | 0.537297 | 2.3:+37548150 | MS.gene66893:CDS |
| AGTTCAGGGTTAAGGCCAAA+AGG | 0.538749 | 2.3:+37547920 | MS.gene66893:CDS |
| TCTGATGATAGCTATCAAAT+GGG | 0.542787 | 2.3:+37549430 | MS.gene66893:CDS |
| TTTCAAGAAATTCAAGTGGT+CGG | 0.544210 | 2.3:+37538698 | MS.gene66893:CDS |
| AAACACCTTGGAAGGGTCAT+CGG | 0.548018 | 2.3:-37538317 | None:intergenic |
| TCAGCGTGGTCGATATCCTA+GGG | 0.553179 | 2.3:+37549048 | MS.gene66893:CDS |
| GTACGAAGAAGAGATGGTTC+GGG | 0.554621 | 2.3:-37538400 | None:intergenic |
| AGCTATCAAATGGGAAGAGG+AGG | 0.557811 | 2.3:+37549439 | MS.gene66893:CDS |
| TCAACAGATATCTTCAGTGA+AGG | 0.558123 | 2.3:+37538648 | MS.gene66893:intron |
| GGTCGATATCCTAGGGGTCG+AGG | 0.559981 | 2.3:+37549055 | MS.gene66893:CDS |
| GATAGCTATCAAATGGGAAG+AGG | 0.563674 | 2.3:+37549436 | MS.gene66893:CDS |
| GGCTCCGATGGATTTGAGGT+CGG | 0.568061 | 2.3:-37538368 | None:intergenic |
| CCCCTACGTCCTCGACCCCT+AGG | 0.571571 | 2.3:-37549064 | None:intergenic |
| AGCTCTAATAGCTCCAGCAA+TGG | 0.572577 | 2.3:-37547789 | None:intergenic |
| TCCGTGATGAGGATCTTGCT+TGG | 0.584059 | 2.3:+37549188 | MS.gene66893:CDS |
| ATCCTAGGGGTCGAGGACGT+AGG | 0.585814 | 2.3:+37549062 | MS.gene66893:CDS |
| AATAAAGTTCCAGTTCATAG+TGG | 0.588272 | 2.3:+37539573 | MS.gene66893:CDS |
| GCAGGAGAGTTCGAGAGACA+CGG | 0.592072 | 2.3:+37538198 | MS.gene66893:CDS |
| GTGTCTCACAGATGGTCACT+CGG | 0.594437 | 2.3:+37538735 | MS.gene66893:CDS |
| GGAAGGGTCATCGGCTAGTG+CGG | 0.594824 | 2.3:-37538308 | None:intergenic |
| TGTGTCTTGATTAGGTACAA+AGG | 0.600593 | 2.3:+37549347 | MS.gene66893:intron |
| ACCTGCAGCTTCACAAATGG+AGG | 0.601511 | 2.3:-37539741 | None:intergenic |
| CTGCAGGTTGGATCTACCAC+AGG | 0.605693 | 2.3:+37539756 | MS.gene66893:CDS |
| TTCGACAGACTCAAACACCT+TGG | 0.605706 | 2.3:-37538329 | None:intergenic |
| TTCTCTGCTTCAGATTCCCG+AGG | 0.606202 | 2.3:-37549373 | None:intergenic |
| TCGGGGACAAGGCCAAAAGA+AGG | 0.606724 | 2.3:+37548161 | MS.gene66893:CDS |
| CTAAGACTGTGTCTCACAGA+TGG | 0.609257 | 2.3:+37538727 | MS.gene66893:CDS |
| GAAGTGGTACGAAGAAGAGA+TGG | 0.609296 | 2.3:-37538406 | None:intergenic |
| TGCAGCTTCACAAATGGAGG+AGG | 0.610308 | 2.3:-37539738 | None:intergenic |
| AAACCCTAAGAAGAAAGGGT+TGG | 0.616776 | 2.3:+37538239 | MS.gene66893:CDS |
| TGACACATTACCTTAGTACC+AGG | 0.616884 | 2.3:-37538811 | None:intergenic |
| TAGGGGAAAGGGTCAAGAAG+AGG | 0.620261 | 2.3:+37549081 | MS.gene66893:CDS |
| AATTCCGACCTCAAATCCAT+CGG | 0.622960 | 2.3:+37538364 | MS.gene66893:CDS |
| AAAACCTTCTAATAATGATG+AGG | 0.630097 | 2.3:+37549153 | MS.gene66893:CDS |
| CCTAGGGGTCGAGGACGTAG+GGG | 0.630811 | 2.3:+37549064 | MS.gene66893:CDS |
| ACTAGCCGATGACCCTTCCA+AGG | 0.633849 | 2.3:+37538312 | MS.gene66893:CDS |
| TCTAGATATTATCCGTGATG+AGG | 0.634969 | 2.3:+37549177 | MS.gene66893:CDS |
| AATATTTCAAGAAATTCAAG+TGG | 0.636238 | 2.3:+37538694 | MS.gene66893:CDS |
| GCCAAGCAAGATCCTCATCA+CGG | 0.638973 | 2.3:-37549189 | None:intergenic |
| GGGTCCATGGAGATAAGAAG+TGG | 0.642593 | 2.3:-37538422 | None:intergenic |
| AAAGCATTGACTGTATTAGG+AGG | 0.643444 | 2.3:+37539615 | MS.gene66893:CDS |
| GTCATCTATAAGGAAGCTAG+AGG | 0.646105 | 2.3:+37539698 | MS.gene66893:CDS |
| TGGAATATGAGTGTACTCAA+CGG | 0.657782 | 2.3:-37538767 | None:intergenic |
| GAGCTATTAGAGCTGAGATG+AGG | 0.662902 | 2.3:+37547798 | MS.gene66893:CDS |
| CAGACTCAAACACCTTGGAA+GGG | 0.688189 | 2.3:-37538324 | None:intergenic |
| CTAGAGGATCGTGATTCAGG+TGG | 0.690835 | 2.3:+37539714 | MS.gene66893:CDS |
| GGACATATCTATGAGCAGTG+TGG | 0.706847 | 2.3:+37538669 | MS.gene66893:CDS |
| AAGACAAGCCTAGTAGTTCG+GGG | 0.714772 | 2.3:+37548144 | MS.gene66893:CDS |
| TGTCTTGATTAGGTACAAAG+GGG | 0.726179 | 2.3:+37549349 | MS.gene66893:intron |
| CAGCGTGGTCGATATCCTAG+GGG | 0.751266 | 2.3:+37549049 | MS.gene66893:CDS |
| TTGAATCAACCATATCAGCG+TGG | 0.758854 | 2.3:+37549034 | MS.gene66893:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 37538196 | 37549528 | 37538196 | ID=MS.gene66893 |
| chr2.3 | mRNA | 37538196 | 37549528 | 37538196 | ID=MS.gene66893.t1;Parent=MS.gene66893 |
| chr2.3 | exon | 37538196 | 37538456 | 37538196 | ID=MS.gene66893.t1.exon1;Parent=MS.gene66893.t1 |
| chr2.3 | CDS | 37538196 | 37538456 | 37538196 | ID=cds.MS.gene66893.t1;Parent=MS.gene66893.t1 |
| chr2.3 | exon | 37538655 | 37538822 | 37538655 | ID=MS.gene66893.t1.exon2;Parent=MS.gene66893.t1 |
| chr2.3 | CDS | 37538655 | 37538822 | 37538655 | ID=cds.MS.gene66893.t1;Parent=MS.gene66893.t1 |
| chr2.3 | exon | 37539561 | 37539777 | 37539561 | ID=MS.gene66893.t1.exon3;Parent=MS.gene66893.t1 |
| chr2.3 | CDS | 37539561 | 37539777 | 37539561 | ID=cds.MS.gene66893.t1;Parent=MS.gene66893.t1 |
| chr2.3 | exon | 37547756 | 37547941 | 37547756 | ID=MS.gene66893.t1.exon4;Parent=MS.gene66893.t1 |
| chr2.3 | CDS | 37547756 | 37547941 | 37547756 | ID=cds.MS.gene66893.t1;Parent=MS.gene66893.t1 |
| chr2.3 | exon | 37548135 | 37548182 | 37548135 | ID=MS.gene66893.t1.exon5;Parent=MS.gene66893.t1 |
| chr2.3 | CDS | 37548135 | 37548182 | 37548135 | ID=cds.MS.gene66893.t1;Parent=MS.gene66893.t1 |
| chr2.3 | exon | 37548978 | 37549246 | 37548978 | ID=MS.gene66893.t1.exon6;Parent=MS.gene66893.t1 |
| chr2.3 | CDS | 37548978 | 37549246 | 37548978 | ID=cds.MS.gene66893.t1;Parent=MS.gene66893.t1 |
| chr2.3 | exon | 37549361 | 37549528 | 37549361 | ID=MS.gene66893.t1.exon7;Parent=MS.gene66893.t1 |
| chr2.3 | CDS | 37549361 | 37549528 | 37549361 | ID=cds.MS.gene66893.t1;Parent=MS.gene66893.t1 |
| Gene Sequence |
| Protein sequence |