AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene057034


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene057034.t1 MTR_2g100240 99.647 283 1 0 1 283 1 283 0.0 575
MS.gene057034.t1 MTR_2g060900 36.842 285 138 5 13 255 1 285 9.91e-49 164
MS.gene057034.t1 MTR_7g019180 36.859 312 162 9 1 281 1 308 5.28e-47 162
MS.gene057034.t1 MTR_4g129730 35.065 231 149 1 32 262 1 230 1.47e-40 142
MS.gene057034.t1 MTR_4g129730 35.931 231 136 3 32 262 1 219 4.28e-40 140
MS.gene057034.t1 MTR_5g072760 31.224 237 152 5 44 270 37 272 2.53e-35 128
MS.gene057034.t1 MTR_5g072760 31.364 220 142 4 44 255 37 255 1.75e-33 123
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene057034.t1 AT1G55170 51.049 286 132 4 1 282 1 282 1.71e-86 260
MS.gene057034.t1 AT3G14750 38.696 230 131 3 37 257 63 291 1.68e-46 159
MS.gene057034.t1 AT1G67170 38.647 207 127 0 33 239 47 253 5.50e-42 148
MS.gene057034.t1 AT1G67170 38.647 207 127 0 33 239 47 253 5.50e-42 148
MS.gene057034.t1 AT2G30120 26.957 230 154 1 42 257 37 266 2.54e-21 91.7
MS.gene057034.t1 AT2G30120 26.754 228 153 1 42 255 37 264 5.92e-21 90.1
MS.gene057034.t1 AT2G30120 26.638 229 154 1 41 255 36 264 6.57e-21 90.5
MS.gene057034.t1 AT5G61920 28.351 194 139 0 28 221 37 230 1.53e-18 82.8
MS.gene057034.t1 AT5G61920 28.351 194 139 0 28 221 37 230 1.53e-18 82.8
MS.gene057034.t1 AT5G61920 28.351 194 139 0 28 221 37 230 1.53e-18 82.8
MS.gene057034.t1 AT5G61920 28.351 194 139 0 28 221 37 230 1.53e-18 82.8
MS.gene057034.t1 AT5G61920 28.351 194 139 0 28 221 37 230 1.53e-18 82.8
MS.gene057034.t1 AT5G61920 28.902 173 123 0 49 221 17 189 1.53e-16 76.6
MS.gene057034.t1 AT2G30120 27.972 143 103 0 39 181 34 176 1.12e-11 62.8
MS.gene057034.t1 AT2G30120 27.972 143 103 0 39 181 34 176 1.62e-11 62.0
MS.gene057034.t1 AT2G30120 27.972 143 103 0 39 181 34 176 1.62e-11 62.0

Find 80 sgRNAs with CRISPR-Local

Find 143 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAGAGAAAGGTCCTCTTTA+TGG 0.176094 2.1:-4482755 MS.gene057034:CDS
TTGCCTTATGGAACAAATTT+TGG 0.192469 2.1:-4482924 MS.gene057034:CDS
ATTCATGCAGGTTTGCCTTA+TGG 0.235597 2.1:-4482936 MS.gene057034:intron
ATGGGGTGGGTACTGCTTCT+AGG 0.246552 2.1:-4482736 MS.gene057034:CDS
CACTTACGAAAGATGTTTCT+AGG 0.253529 2.1:-4483998 MS.gene057034:CDS
AGTATCAAACAAGAACTTTC+TGG 0.261139 2.1:-4484032 MS.gene057034:CDS
CACGAAGTTTCTCAACTTCT+CGG 0.317894 2.1:+4483701 None:intergenic
ACCTAGCACGCATCAGTTCT+TGG 0.336174 2.1:+4483919 None:intergenic
ACCTCATCCAGCATTGTTAG+AGG 0.338446 2.1:-4484327 MS.gene057034:CDS
CCTCCATATGCAGATGGATA+TGG 0.340583 2.1:-4482879 MS.gene057034:CDS
CAGAGAAAGGTCCTCTTTAT+GGG 0.349670 2.1:-4482754 MS.gene057034:CDS
TCAATGAGATCTGAGATTGA+TGG 0.370744 2.1:-4483948 MS.gene057034:CDS
GGAGGCTGGTGGCGGATAAC+AGG 0.382841 2.1:-4484274 MS.gene057034:CDS
CTTCCGATGGATACCCTCTT+CGG 0.387777 2.1:+4484396 None:intergenic
GAAGGCAAACATGGAGTTCA+TGG 0.395776 2.1:-4483764 MS.gene057034:CDS
CTACCAAAATTTGTTCCATA+AGG 0.410355 2.1:+4482921 None:intergenic
CATCGTATGAATTTAGCAAT+TGG 0.424616 2.1:-4484191 MS.gene057034:CDS
TGAAGTTGGAGTCTGATCTT+AGG 0.426762 2.1:-4484115 MS.gene057034:CDS
GGTGGTGGCCCGCGAGCATA+AGG 0.435456 2.1:+4484371 None:intergenic
TAGCATGGATGGAAGACATT+GGG 0.438242 2.1:-4483668 MS.gene057034:CDS
TTTCTCAACTTCTCGGGCCA+TGG 0.443621 2.1:+4483708 None:intergenic
TTCCGATGGATACCCTCTTC+GGG 0.447941 2.1:+4484397 None:intergenic
AAACATCTTTCGTAAGTGTC+TGG 0.450505 2.1:+4484003 None:intergenic
GTTTAGGCTGCTGCAGAGAA+AGG 0.464656 2.1:-4482767 MS.gene057034:intron
GATGGAAGACATTGGGGAGC+TGG 0.465511 2.1:-4483661 MS.gene057034:intron
GTATCAAACAAGAACTTTCT+GGG 0.473347 2.1:-4484031 MS.gene057034:CDS
TCAATCTCAGATCTCATTGA+AGG 0.475047 2.1:+4483951 None:intergenic
ACGAAGTTTCTCAACTTCTC+GGG 0.483936 2.1:+4483702 None:intergenic
AGCTCTTCCTCTAACAATGC+TGG 0.487736 2.1:+4484320 None:intergenic
ACACCATATCCATCTGCATA+TGG 0.495250 2.1:+4482876 None:intergenic
GCGAGACCTTGCAGCTGCGA+AGG 0.508426 2.1:-4484222 MS.gene057034:CDS
TATGGTGGATTATGAAAAGA+AGG 0.509898 2.1:-4483782 MS.gene057034:CDS
TACCCTCTTCGGGAACTCAT+TGG 0.513298 2.1:+4484407 None:intergenic
TCCTCTAACAATGCTGGATG+AGG 0.514770 2.1:+4484326 None:intergenic
TGCTGTCGTGGCATTGGTGG+TGG 0.516987 2.1:+4484356 None:intergenic
TATCCATCTGCATATGGAGG+TGG 0.517988 2.1:+4482882 None:intergenic
GCTGAGCTTGCTAGCATGGA+TGG 0.521001 2.1:-4483679 MS.gene057034:CDS
TCGTGCTGAGCTTGCTAGCA+TGG 0.521988 2.1:-4483683 MS.gene057034:CDS
CTGAACATGAGATGCATTCG+AGG 0.524074 2.1:-4484157 MS.gene057034:CDS
GCAGTACCCACCCCATAAAG+AGG 0.528840 2.1:+4482743 None:intergenic
AGACCTTGCAGCTGCGAAGG+AGG 0.529458 2.1:-4484219 MS.gene057034:CDS
CATGGAACAGAGGCAGTCAA+TGG 0.533149 2.1:-4483746 MS.gene057034:CDS
TGTATAACTTCATTCTTCAA+CGG 0.535567 2.1:+4484083 None:intergenic
GGAATATGCTGTCGTGGCAT+TGG 0.548596 2.1:+4484350 None:intergenic
TCTAACAATGCTGGATGAGG+TGG 0.550555 2.1:+4484329 None:intergenic
CCTCTTCGGGAACTCATTGG+TGG 0.551456 2.1:+4484410 None:intergenic
CTAGCATGGATGGAAGACAT+TGG 0.560779 2.1:-4483669 MS.gene057034:CDS
TCGGAAGGTCCTTATGCTCG+CGG 0.566608 2.1:-4484380 MS.gene057034:CDS
ACCAAGAACTGATGCGTGCT+AGG 0.567292 2.1:-4483920 MS.gene057034:intron
TTATGAAAAGAAGGCAAACA+TGG 0.573229 2.1:-4483773 MS.gene057034:CDS
GCTCCTCCTTCGCAGCTGCA+AGG 0.574836 2.1:+4484216 None:intergenic
ATTCAACGACGGTTTGAGCG+AGG 0.579107 2.1:+4482698 None:intergenic
AAAGGTCCTCTTTATGGGGT+GGG 0.581180 2.1:-4482749 MS.gene057034:CDS
GAAAGGTCCTCTTTATGGGG+TGG 0.586390 2.1:-4482750 MS.gene057034:CDS
ATATGCTGTCGTGGCATTGG+TGG 0.591214 2.1:+4484353 None:intergenic
ACAGGAGGTTGATTGATGAT+CGG 0.594043 2.1:-4484256 MS.gene057034:CDS
TTCCCACCTCCATATGCAGA+TGG 0.594536 2.1:-4482885 MS.gene057034:CDS
ATCCATCTGCATATGGAGGT+GGG 0.596363 2.1:+4482883 None:intergenic
CGGAAGGTCCTTATGCTCGC+GGG 0.597736 2.1:-4484379 MS.gene057034:CDS
CAAACAAGAACTTTCTGGGA+AGG 0.599275 2.1:-4484027 MS.gene057034:CDS
TGAAATGAGGAGGCTGGTGG+CGG 0.604523 2.1:-4484282 MS.gene057034:CDS
GCATGCTGAAATGAGGAGGC+TGG 0.605896 2.1:-4484288 MS.gene057034:CDS
GGCTGGTGGCGGATAACAGG+AGG 0.608308 2.1:-4484271 MS.gene057034:CDS
CACCAATGAGTTCCCGAAGA+GGG 0.614590 2.1:-4484409 MS.gene057034:CDS
CGAGCATAAGGACCTTCCGA+TGG 0.617038 2.1:+4484383 None:intergenic
CGAAGAGGGTATCCATCGGA+AGG 0.623087 2.1:-4484395 MS.gene057034:CDS
AAGTGCAGCATGCTGAAATG+AGG 0.630681 2.1:-4484295 MS.gene057034:CDS
TTCCCGAAGAGGGTATCCAT+CGG 0.640372 2.1:-4484399 MS.gene057034:CDS
AGCATGGATGGAAGACATTG+GGG 0.653311 2.1:-4483667 MS.gene057034:CDS
TGAGGTGGAATATGCTGTCG+TGG 0.657020 2.1:+4484344 None:intergenic
CCATATCCATCTGCATATGG+AGG 0.657742 2.1:+4482879 None:intergenic
TGCTGAAATGAGGAGGCTGG+TGG 0.673111 2.1:-4484285 MS.gene057034:CDS
TGAACATGAGATGCATTCGA+GGG 0.676175 2.1:-4484156 MS.gene057034:CDS
AGAGAAAGGTCCTCTTTATG+GGG 0.677550 2.1:-4482753 MS.gene057034:CDS
TGCAGCATGCTGAAATGAGG+AGG 0.680683 2.1:-4484292 MS.gene057034:CDS
CAATCACTTAGATTCAACGA+CGG 0.682596 2.1:+4482687 None:intergenic
TTGGTGGCTCTCTATGAACA+CGG 0.684269 2.1:+4484426 None:intergenic
ACATGGAGTTCATGGAACAG+AGG 0.685058 2.1:-4483756 MS.gene057034:CDS
CCACCAATGAGTTCCCGAAG+AGG 0.693852 2.1:-4484410 MS.gene057034:CDS
AGATGGATATGGTGTTCACA+TGG 0.705947 2.1:-4482868 MS.gene057034:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATAAAAGACATGAAAAA+CGG - chr2.1:4483657-4483676 MS.gene057034:intron 15.0%
!!! ATTTTTGTTTTATAGAACTA+TGG - chr2.1:4483340-4483359 MS.gene057034:intron 15.0%
!! AATGAAATGACATGAATAAT+AGG - chr2.1:4483626-4483645 MS.gene057034:intron 20.0%
!! ATCCAATTAACACAAATAAT+AGG + chr2.1:4484054-4484073 None:intergenic 20.0%
!! ATCCTATTATTTGTGTTAAT+TGG - chr2.1:4484049-4484068 MS.gene057034:CDS 20.0%
!!! TGTTGATAAAAATATGAAGT+TGG - chr2.1:4483011-4483030 MS.gene057034:intron 20.0%
!!! TTTTGTGTATTATGTGATTA+CGG + chr2.1:4483756-4483775 None:intergenic 20.0%
!!! TTTTTAGAATTTAAGGCAAT+TGG - chr2.1:4483784-4483803 MS.gene057034:CDS 20.0%
! AATCACATAATACACAAAAG+TGG - chr2.1:4483757-4483776 MS.gene057034:CDS 25.0%
! AATGAAGCAAACGTTAAAAA+AGG + chr2.1:4484187-4484206 None:intergenic 25.0%
! ATCTTTCAGACAATTATGAA+GGG + chr2.1:4483715-4483734 None:intergenic 25.0%
! ATGAAGCAAACGTTAAAAAA+GGG + chr2.1:4484186-4484205 None:intergenic 25.0%
! TGTATAACTTCATTCTTCAA+CGG + chr2.1:4483060-4483079 None:intergenic 25.0%
!! GGTCTAAAATTATTGTGTTA+AGG + chr2.1:4484308-4484327 None:intergenic 25.0%
!!! AGAATTTTAGTATTCATCGA+GGG - chr2.1:4483903-4483922 MS.gene057034:intron 25.0%
!!! TGGCAGTTTTTTAGAATTTA+AGG - chr2.1:4483777-4483796 MS.gene057034:CDS 25.0%
!!! TTTGTTTTATAGAACTATGG+TGG - chr2.1:4483343-4483362 MS.gene057034:intron 25.0%
AAGCAAAGTAAATGAAACCT+TGG + chr2.1:4484345-4484364 None:intergenic 30.0%
AAGGATGATAAATTCTGCAA+AGG + chr2.1:4483527-4483546 None:intergenic 30.0%
AGTATCAAACAAGAACTTTC+TGG - chr2.1:4483108-4483127 MS.gene057034:intron 30.0%
ATAATTGTCTGAAAGATGGT+TGG - chr2.1:4483718-4483737 MS.gene057034:CDS 30.0%
CATCGTATGAATTTAGCAAT+TGG - chr2.1:4482949-4482968 MS.gene057034:intron 30.0%
CATCTTTCAGACAATTATGA+AGG + chr2.1:4483716-4483735 None:intergenic 30.0%
CTTCATAATTGTCTGAAAGA+TGG - chr2.1:4483714-4483733 MS.gene057034:CDS 30.0%
GAGTTAAGGTGATTAAGAAT+AGG + chr2.1:4483839-4483858 None:intergenic 30.0%
GCTATGCTAGTAAATACATA+TGG + chr2.1:4483562-4483581 None:intergenic 30.0%
GTATCAAACAAGAACTTTCT+GGG - chr2.1:4483109-4483128 MS.gene057034:intron 30.0%
TAATTGTCTGAAAGATGGTT+GGG - chr2.1:4483719-4483738 MS.gene057034:CDS 30.0%
TATAGACACATCATGATGTT+TGG - chr2.1:4484084-4484103 MS.gene057034:CDS 30.0%
TGAAGCAAACGTTAAAAAAG+GGG + chr2.1:4484185-4484204 None:intergenic 30.0%
TTATGAAAAGAAGGCAAACA+TGG - chr2.1:4483367-4483386 MS.gene057034:intron 30.0%
! ATATCTTTCGATCTTTTGAC+TGG - chr2.1:4483956-4483975 MS.gene057034:CDS 30.0%
! CTACCAAAATTTGTTCCATA+AGG + chr2.1:4484222-4484241 None:intergenic 30.0%
! TCTATCTTTAAGCATCCTTT+TGG - chr2.1:4483276-4483295 MS.gene057034:intron 30.0%
! TTGCCTTATGGAACAAATTT+TGG - chr2.1:4484216-4484235 MS.gene057034:CDS 30.0%
!! CAGAATTTTAGTATTCATCG+AGG - chr2.1:4483902-4483921 MS.gene057034:intron 30.0%
!! CTATGTGATGATTTTGAGAA+CGG - chr2.1:4483879-4483898 MS.gene057034:intron 30.0%
!! TATGGTGGATTATGAAAAGA+AGG - chr2.1:4483358-4483377 MS.gene057034:intron 30.0%
AAACATCTTTCGTAAGTGTC+TGG + chr2.1:4483140-4483159 None:intergenic 35.0%
AATTGTCTGAAAGATGGTTG+GGG - chr2.1:4483720-4483739 MS.gene057034:CDS 35.0%
CACTTACGAAAGATGTTTCT+AGG - chr2.1:4483142-4483161 MS.gene057034:intron 35.0%
GGAGTTCATTAGTGATAACA+GGG - chr2.1:4483924-4483943 MS.gene057034:CDS 35.0%
TCAATCTCAGATCTCATTGA+AGG + chr2.1:4483192-4483211 None:intergenic 35.0%
! TCAATGAGATCTGAGATTGA+TGG - chr2.1:4483192-4483211 MS.gene057034:intron 35.0%
! TCTTTAAGCATCCTTTTGGT+TGG - chr2.1:4483280-4483299 MS.gene057034:intron 35.0%
! TGCTACAGTATCTGCATTTT+TGG + chr2.1:4484030-4484049 None:intergenic 35.0%
! TTGTGGATTGATTGCTAACA+CGG - chr2.1:4483244-4483263 MS.gene057034:intron 35.0%
!! AACAAATTTTGGTAGTCCAG+AGG - chr2.1:4484227-4484246 MS.gene057034:CDS 35.0%
!! ACAAATTTTGGTAGTCCAGA+GGG - chr2.1:4484228-4484247 MS.gene057034:CDS 35.0%
!! CTTTAAGCATCCTTTTGGTT+GGG - chr2.1:4483281-4483300 MS.gene057034:intron 35.0%
AACGTTTGCTTCATTCATGC+AGG - chr2.1:4484192-4484211 MS.gene057034:CDS 40.0%
ACACCATATCCATCTGCATA+TGG + chr2.1:4484267-4484286 None:intergenic 40.0%
ACCTTGGAAAATTGAATGCG+AGG + chr2.1:4484329-4484348 None:intergenic 40.0%
ACGAAGTTTCTCAACTTCTC+GGG + chr2.1:4483441-4483460 None:intergenic 40.0%
AGAGAAAGGTCCTCTTTATG+GGG - chr2.1:4484387-4484406 MS.gene057034:CDS 40.0%
AGATGGATATGGTGTTCACA+TGG - chr2.1:4484272-4484291 MS.gene057034:CDS 40.0%
ATGCAGAAATCCCAACCAAA+AGG + chr2.1:4483294-4483313 None:intergenic 40.0%
ATTCATGCAGGTTTGCCTTA+TGG - chr2.1:4484204-4484223 MS.gene057034:CDS 40.0%
ATTGTCTGAAAGATGGTTGG+GGG - chr2.1:4483721-4483740 MS.gene057034:CDS 40.0%
CACGAAGTTTCTCAACTTCT+CGG + chr2.1:4483442-4483461 None:intergenic 40.0%
CAGAGAAAGGTCCTCTTTAT+GGG - chr2.1:4484386-4484405 MS.gene057034:CDS 40.0%
CATATGGAGTTAACGACTGA+AGG + chr2.1:4483546-4483565 None:intergenic 40.0%
CTTTGCTTGTGCTTCTGTTT+AGG - chr2.1:4484357-4484376 MS.gene057034:CDS 40.0%
GCAGTCAATGGAGAAAAACA+TGG - chr2.1:4483406-4483425 MS.gene057034:intron 40.0%
GGAGAAAAACATGGTTTCCA+TGG - chr2.1:4483415-4483434 MS.gene057034:intron 40.0%
GGGAGTTCATTAGTGATAAC+AGG - chr2.1:4483923-4483942 MS.gene057034:CDS 40.0%
TAGACAAGTTAGAGAAAGCG+TGG + chr2.1:4483862-4483881 None:intergenic 40.0%
TAGCATGGATGGAAGACATT+GGG - chr2.1:4483472-4483491 MS.gene057034:intron 40.0%
TGAACATGAGATGCATTCGA+GGG - chr2.1:4482984-4483003 MS.gene057034:intron 40.0%
TGAAGTTGGAGTCTGATCTT+AGG - chr2.1:4483025-4483044 MS.gene057034:intron 40.0%
! ACAGGAGGTTGATTGATGAT+CGG - chr2.1:4482884-4482903 MS.gene057034:CDS 40.0%
! ACCTCGCATTCAATTTTCCA+AGG - chr2.1:4484325-4484344 MS.gene057034:CDS 40.0%
! AGACAAGTTAGAGAAAGCGT+GGG + chr2.1:4483861-4483880 None:intergenic 40.0%
! CAAACAAGAACTTTCTGGGA+AGG - chr2.1:4483113-4483132 MS.gene057034:intron 40.0%
!! AAATTTTGGTAGTCCAGAGG+GGG - chr2.1:4484230-4484249 MS.gene057034:CDS 40.0%
!! CAAATTTTGGTAGTCCAGAG+GGG - chr2.1:4484229-4484248 MS.gene057034:CDS 40.0%
AAAGGTCCTCTTTATGGGGT+GGG - chr2.1:4484391-4484410 MS.gene057034:CDS 45.0%
AAGTGCAGCATGCTGAAATG+AGG - chr2.1:4482845-4482864 MS.gene057034:intron 45.0%
ACATGGAGTTCATGGAACAG+AGG - chr2.1:4483384-4483403 MS.gene057034:intron 45.0%
ACCTCATCCAGCATTGTTAG+AGG - chr2.1:4482813-4482832 MS.gene057034:intron 45.0%
AGCATGGATGGAAGACATTG+GGG - chr2.1:4483473-4483492 MS.gene057034:intron 45.0%
AGCTCTTCCTCTAACAATGC+TGG + chr2.1:4482823-4482842 None:intergenic 45.0%
ATCCATCTGCATATGGAGGT+GGG + chr2.1:4484260-4484279 None:intergenic 45.0%
ATCCCACAAGGTGTATACGT+AGG - chr2.1:4483998-4484017 MS.gene057034:CDS 45.0%
ATCCCTACGTATACACCTTG+TGG + chr2.1:4484004-4484023 None:intergenic 45.0%
CCATATCCATCTGCATATGG+AGG + chr2.1:4484264-4484283 None:intergenic 45.0%
CCTCCATATGCAGATGGATA+TGG - chr2.1:4484261-4484280 MS.gene057034:CDS 45.0%
CTAGCATGGATGGAAGACAT+TGG - chr2.1:4483471-4483490 MS.gene057034:intron 45.0%
CTGAACATGAGATGCATTCG+AGG - chr2.1:4482983-4483002 MS.gene057034:intron 45.0%
GAAGGCAAACATGGAGTTCA+TGG - chr2.1:4483376-4483395 MS.gene057034:intron 45.0%
GCAGAGAAAGGTCCTCTTTA+TGG - chr2.1:4484385-4484404 MS.gene057034:CDS 45.0%
TATCCATCTGCATATGGAGG+TGG + chr2.1:4484261-4484280 None:intergenic 45.0%
TCCCACAAGGTGTATACGTA+GGG - chr2.1:4483999-4484018 MS.gene057034:CDS 45.0%
TCCCTACGTATACACCTTGT+GGG + chr2.1:4484003-4484022 None:intergenic 45.0%
TCCTCTAACAATGCTGGATG+AGG + chr2.1:4482817-4482836 None:intergenic 45.0%
TCTAACAATGCTGGATGAGG+TGG + chr2.1:4482814-4482833 None:intergenic 45.0%
! TAGAGAAAGCGTGGGAGTTA+AGG + chr2.1:4483853-4483872 None:intergenic 45.0%
! TTGGTGGCTCTCTATGAACA+CGG + chr2.1:4482717-4482736 None:intergenic 45.0%
!! AATTTTGGTAGTCCAGAGGG+GGG - chr2.1:4484231-4484250 MS.gene057034:CDS 45.0%
!! CTTTTGACTGGCAGTGTTGA+GGG - chr2.1:4483968-4483987 MS.gene057034:CDS 45.0%
!! TCTTTTGACTGGCAGTGTTG+AGG - chr2.1:4483967-4483986 MS.gene057034:CDS 45.0%
ACCAAGAACTGATGCGTGCT+AGG - chr2.1:4483220-4483239 MS.gene057034:intron 50.0%
ACCTAGCACGCATCAGTTCT+TGG + chr2.1:4483224-4483243 None:intergenic 50.0%
ACTGATGCGTGCTAGGTTTG+TGG - chr2.1:4483227-4483246 MS.gene057034:intron 50.0%
CACCAATGAGTTCCCGAAGA+GGG - chr2.1:4482731-4482750 MS.gene057034:CDS 50.0%
CATGGAACAGAGGCAGTCAA+TGG - chr2.1:4483394-4483413 MS.gene057034:intron 50.0%
CTTCCGATGGATACCCTCTT+CGG + chr2.1:4482747-4482766 None:intergenic 50.0%
GAAAGGTCCTCTTTATGGGG+TGG - chr2.1:4484390-4484409 MS.gene057034:CDS 50.0%
GGAATATGCTGTCGTGGCAT+TGG + chr2.1:4482793-4482812 None:intergenic 50.0%
GTTTAGGCTGCTGCAGAGAA+AGG - chr2.1:4484373-4484392 MS.gene057034:CDS 50.0%
TACCCTCTTCGGGAACTCAT+TGG + chr2.1:4482736-4482755 None:intergenic 50.0%
TGAGGTGGAATATGCTGTCG+TGG + chr2.1:4482799-4482818 None:intergenic 50.0%
TGCAGCATGCTGAAATGAGG+AGG - chr2.1:4482848-4482867 MS.gene057034:intron 50.0%
TTCCCACCTCCATATGCAGA+TGG - chr2.1:4484255-4484274 MS.gene057034:CDS 50.0%
TTCCGATGGATACCCTCTTC+GGG + chr2.1:4482746-4482765 None:intergenic 50.0%
TTTCTCAACTTCTCGGGCCA+TGG + chr2.1:4483435-4483454 None:intergenic 50.0%
! ATATGCTGTCGTGGCATTGG+TGG + chr2.1:4482790-4482809 None:intergenic 50.0%
!! TTCCCGAAGAGGGTATCCAT+CGG - chr2.1:4482741-4482760 MS.gene057034:CDS 50.0%
CCACCAATGAGTTCCCGAAG+AGG - chr2.1:4482730-4482749 MS.gene057034:CDS 55.0%
CCTCTTCGGGAACTCATTGG+TGG + chr2.1:4482733-4482752 None:intergenic 55.0%
CGAGCATAAGGACCTTCCGA+TGG + chr2.1:4482760-4482779 None:intergenic 55.0%
GATGGAAGACATTGGGGAGC+TGG - chr2.1:4483479-4483498 MS.gene057034:intron 55.0%
GCAGTACCCACCCCATAAAG+AGG + chr2.1:4484400-4484419 None:intergenic 55.0%
GCATGCTGAAATGAGGAGGC+TGG - chr2.1:4482852-4482871 MS.gene057034:intron 55.0%
TCGGAAGGTCCTTATGCTCG+CGG - chr2.1:4482760-4482779 MS.gene057034:CDS 55.0%
TGAAATGAGGAGGCTGGTGG+CGG - chr2.1:4482858-4482877 MS.gene057034:intron 55.0%
TGCTGAAATGAGGAGGCTGG+TGG - chr2.1:4482855-4482874 MS.gene057034:intron 55.0%
! ATGGGGTGGGTACTGCTTCT+AGG - chr2.1:4484404-4484423 MS.gene057034:CDS 55.0%
! TTGACTGGCAGTGTTGAGGG+TGG - chr2.1:4483971-4483990 MS.gene057034:CDS 55.0%
!! CGAAGAGGGTATCCATCGGA+AGG - chr2.1:4482745-4482764 MS.gene057034:CDS 55.0%
!! GCTGAGCTTGCTAGCATGGA+TGG - chr2.1:4483461-4483480 MS.gene057034:intron 55.0%
!! TCGTGCTGAGCTTGCTAGCA+TGG - chr2.1:4483457-4483476 MS.gene057034:intron 55.0%
AGACCTTGCAGCTGCGAAGG+AGG - chr2.1:4482921-4482940 MS.gene057034:CDS 60.0%
CGGAAGGTCCTTATGCTCGC+GGG - chr2.1:4482761-4482780 MS.gene057034:CDS 60.0%
! ACTGGCAGTGTTGAGGGTGG+TGG - chr2.1:4483974-4483993 MS.gene057034:CDS 60.0%
! GAGGGTGGTGGTATCCCACA+AGG - chr2.1:4483986-4484005 MS.gene057034:CDS 60.0%
!! TGCTGTCGTGGCATTGGTGG+TGG + chr2.1:4482787-4482806 None:intergenic 60.0%
GCGAGACCTTGCAGCTGCGA+AGG - chr2.1:4482918-4482937 MS.gene057034:CDS 65.0%
GCTCCTCCTTCGCAGCTGCA+AGG + chr2.1:4482927-4482946 None:intergenic 65.0%
!! GGAGGCTGGTGGCGGATAAC+AGG - chr2.1:4482866-4482885 MS.gene057034:intron 65.0%
!! GGCTGGTGGCGGATAACAGG+AGG - chr2.1:4482869-4482888 MS.gene057034:CDS 65.0%
GGAGGTGGGAAACCCCCCTC+TGG + chr2.1:4484246-4484265 None:intergenic 70.0%
! GGTGGTGGCCCGCGAGCATA+AGG + chr2.1:4482772-4482791 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 4482700 4484462 4482700 ID=MS.gene057034
chr2.1 mRNA 4482700 4484462 4482700 ID=MS.gene057034.t1;Parent=MS.gene057034
chr2.1 exon 4483921 4484462 4483921 ID=MS.gene057034.t1.exon1;Parent=MS.gene057034.t1
chr2.1 CDS 4483921 4484462 4483921 ID=cds.MS.gene057034.t1;Parent=MS.gene057034.t1
chr2.1 exon 4483662 4483807 4483662 ID=MS.gene057034.t1.exon2;Parent=MS.gene057034.t1
chr2.1 CDS 4483662 4483807 4483662 ID=cds.MS.gene057034.t1;Parent=MS.gene057034.t1
chr2.1 exon 4482869 4482948 4482869 ID=MS.gene057034.t1.exon3;Parent=MS.gene057034.t1
chr2.1 CDS 4482869 4482948 4482869 ID=cds.MS.gene057034.t1;Parent=MS.gene057034.t1
chr2.1 exon 4482700 4482783 4482700 ID=MS.gene057034.t1.exon4;Parent=MS.gene057034.t1
chr2.1 CDS 4482700 4482783 4482700 ID=cds.MS.gene057034.t1;Parent=MS.gene057034.t1
Gene Sequence

>MS.gene057034

ATGGGATCAAGACACCGTGTTCATAGAGAGCCACCAATGAGTTCCCGAAGAGGGTATCCATCGGAAGGTCCTTATGCTCGCGGGCCACCACCAATGCCACGACAGCATATTCCACCTCATCCAGCATTGTTAGAGGAAGAGCTTGAAGTGCAGCATGCTGAAATGAGGAGGCTGGTGGCGGATAACAGGAGGTTGATTGATGATCGGATGACGTTGCAGCGAGACCTTGCAGCTGCGAAGGAGGAGCTTCATCGTATGAATTTAGCAATTGGCGATATTCGTGCTGAACATGAGATGCATTCGAGGGAGCTTGTTGATAAAAATATGAAGTTGGAGTCTGATCTTAGGTCGACTGAGCCGTTGAAGAATGAAGTTATACAACTGCGAGCTGAAGTTCAAAAACTTAGTAGTATCAAACAAGAACTTTCTGGGAAGGTCCAGACACTTACGAAAGATGTTTCTAGGTTACAGTCTGATAATCAACAAATTCCTTCAATGAGATCTGAGATTGATGGTTTGCACCAAGAACTGATGCGTGCTAGGTTTGTGGATTGATTGCTAACACGGCTTTTGTTTTCTATCTTTAAGCATCCTTTTGGTTGGGATTTCTGCATTTGTTTTCTTGAACTGATAATGTTGCATTTTTGTTTTATAGAACTATGGTGGATTATGAAAAGAAGGCAAACATGGAGTTCATGGAACAGAGGCAGTCAATGGAGAAAAACATGGTTTCCATGGCCCGAGAAGTTGAGAAACTTCGTGCTGAGCTTGCTAGCATGGATGGAAGACATTGGGGAGCTGGTATGACATGTTTTTTATATTGTCCTTTGCAGAATTTATCATCCTTCAGTCGTTAACTCCATATGTATTTACTAGCATAGCAATACAATCTGTGACTTGTCAAAACAATTGTAATAGTCTGATCTAATGAAATGACATGAATAATAGGTGAGTCATTTAATAAAAGACATGAAAAACGGTAAAAATGACATTTCTTCTATTATTTTAAAGACCCTTCATAATTGTCTGAAAGATGGTTGGGGGTGTCAGTAACCGTAATCACATAATACACAAAAGTGGCAGTTTTTTAGAATTTAAGGCAATTGGTAACTGAATTTAAAATAATATAATTTTTTCCTATTCTTAATCACCTTAACTCCCACGCTTTCTCTAACTTGTCTATGTGATGATTTTGAGAACGGCAGAATTTTAGTATTCATCGAGGGAGTTCATTAGTGATAACAGGGCTTGTACTCATATCTTTCGATCTTTTGACTGGCAGTGTTGAGGGTGGTGGTATCCCACAAGGTGTATACGTAGGGATATGCCAAAAATGCAGATACTGTAGCATCCTATTATTTGTGTTAATTGGATACACATATAATATAGACACATCATGATGTTTGGAGTATCTGTGCTTCATTGACTGAACACTGAAATTATTAATTATATAGTTACTGAGATATTATTCTTGTTCTTTTACCCCTTTTTTAACGTTTGCTTCATTCATGCAGGTTTGCCTTATGGAACAAATTTTGGTAGTCCAGAGGGGGGTTTCCCACCTCCATATGCAGATGGATATGGTGTTCACATGGTAAGTGTCTTCCTTAACACAATAATTTTAGACCTCGCATTCAATTTTCCAAGGTTTCATTTACTTTGCTTGTGCTTCTGTTTAGGCTGCTGCAGAGAAAGGTCCTCTTTATGGGGTGGGTACTGCTTCTAGGAAAGCACACGAGAAGCCTCGCTCAAACCGTCGTTGA

Protein sequence

>MS.gene057034.t1

MGSRHRVHREPPMSSRRGYPSEGPYARGPPPMPRQHIPPHPALLEEELEVQHAEMRRLVADNRRLIDDRMTLQRDLAAAKEELHRMNLAIGDIRAEHEMHSRELVDKNMKLESDLRSTEPLKNEVIQLRAEVQKLSSIKQELSGKVQTLTKDVSRLQSDNQQIPSMRSEIDGLHQELMRARTMVDYEKKANMEFMEQRQSMEKNMVSMAREVEKLRAELASMDGRHWGAGLPYGTNFGSPEGGFPPPYADGYGVHMAAAEKGPLYGVGTASRKAHEKPRSNRR