Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67001.t1 | XP_013451561.1 | 83.9 | 311 | 12 | 1 | 8 | 280 | 1 | 311 | 1.90E-141 | 511.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67001.t1 | P20072 | 28.9 | 273 | 151 | 5 | 41 | 276 | 194 | 460 | 6.4e-26 | 119.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67001.t1 | A0A072U747 | 83.9 | 311 | 12 | 1 | 8 | 280 | 1 | 311 | 1.3e-141 | 511.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051744 | MS.gene67001 | 0.825576 | 4.35E-54 | -1.69E-46 |
| MS.gene053226 | MS.gene67001 | 0.815927 | 7.19E-52 | -1.69E-46 |
| MS.gene057915 | MS.gene67001 | 0.808892 | 2.48E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67001.t1 | MTR_6g028030 | 83.923 | 311 | 12 | 1 | 8 | 280 | 1 | 311 | 0.0 | 525 |
| MS.gene67001.t1 | MTR_8g038220 | 26.875 | 320 | 185 | 6 | 1 | 279 | 1 | 312 | 9.85e-30 | 114 |
| MS.gene67001.t1 | MTR_6g071605 | 29.242 | 277 | 144 | 6 | 41 | 276 | 45 | 310 | 1.04e-28 | 111 |
| MS.gene67001.t1 | MTR_8g107640 | 28.146 | 302 | 169 | 6 | 16 | 276 | 16 | 310 | 1.61e-28 | 111 |
| MS.gene67001.t1 | MTR_8g038220 | 27.178 | 287 | 165 | 4 | 30 | 279 | 32 | 311 | 2.38e-27 | 108 |
| MS.gene67001.t1 | MTR_6g071615 | 28.391 | 317 | 179 | 6 | 1 | 276 | 1 | 310 | 8.21e-27 | 106 |
| MS.gene67001.t1 | MTR_8g038180 | 27.812 | 320 | 182 | 8 | 1 | 279 | 1 | 312 | 8.67e-27 | 106 |
| MS.gene67001.t1 | MTR_6g071595 | 30.072 | 276 | 143 | 6 | 41 | 276 | 45 | 310 | 8.02e-26 | 103 |
| MS.gene67001.t1 | MTR_1g112520 | 28.205 | 273 | 152 | 5 | 41 | 276 | 45 | 310 | 2.62e-24 | 100 |
| MS.gene67001.t1 | MTR_8g038150 | 26.948 | 308 | 174 | 6 | 16 | 279 | 16 | 316 | 6.10e-24 | 99.0 |
| MS.gene67001.t1 | MTR_1g033560 | 27.760 | 317 | 181 | 8 | 1 | 276 | 1 | 310 | 9.36e-24 | 98.6 |
| MS.gene67001.t1 | MTR_3g018780 | 25.087 | 287 | 171 | 4 | 30 | 279 | 33 | 312 | 4.78e-23 | 96.7 |
| MS.gene67001.t1 | MTR_3g018790 | 24.051 | 316 | 192 | 5 | 5 | 279 | 4 | 312 | 1.43e-22 | 95.1 |
| MS.gene67001.t1 | MTR_5g063670 | 28.676 | 272 | 152 | 8 | 41 | 276 | 45 | 310 | 2.35e-20 | 89.4 |
| MS.gene67001.t1 | MTR_8g038210 | 24.688 | 320 | 191 | 8 | 1 | 279 | 1 | 311 | 1.67e-18 | 84.0 |
| MS.gene67001.t1 | MTR_8g038210 | 24.918 | 305 | 180 | 7 | 16 | 279 | 15 | 311 | 2.10e-18 | 83.6 |
| MS.gene67001.t1 | MTR_3g018790 | 25.316 | 237 | 137 | 3 | 80 | 279 | 25 | 258 | 8.56e-18 | 81.3 |
| MS.gene67001.t1 | MTR_2g031980 | 23.179 | 302 | 184 | 5 | 16 | 276 | 15 | 309 | 3.34e-17 | 80.5 |
| MS.gene67001.t1 | MTR_0276s0050 | 26.855 | 283 | 165 | 8 | 30 | 276 | 34 | 310 | 4.44e-17 | 80.1 |
| MS.gene67001.t1 | MTR_8g038170 | 26.224 | 286 | 156 | 9 | 41 | 279 | 35 | 312 | 1.44e-16 | 78.6 |
| MS.gene67001.t1 | MTR_8g038170 | 26.224 | 286 | 156 | 9 | 41 | 279 | 35 | 312 | 1.44e-16 | 78.6 |
| MS.gene67001.t1 | MTR_6g071595 | 27.103 | 214 | 105 | 5 | 41 | 213 | 45 | 248 | 4.13e-14 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67001.t1 | AT5G12380 | 29.348 | 276 | 151 | 4 | 38 | 276 | 41 | 309 | 2.14e-26 | 105 |
| MS.gene67001.t1 | AT1G35720 | 28.521 | 284 | 160 | 9 | 30 | 276 | 34 | 311 | 5.76e-21 | 90.9 |
| MS.gene67001.t1 | AT5G65020 | 27.961 | 304 | 172 | 10 | 14 | 276 | 14 | 311 | 6.24e-21 | 90.9 |
| MS.gene67001.t1 | AT5G65020 | 28.521 | 284 | 160 | 9 | 30 | 276 | 19 | 296 | 1.17e-19 | 87.0 |
| MS.gene67001.t1 | AT5G10230 | 26.403 | 303 | 177 | 9 | 14 | 276 | 14 | 310 | 7.51e-19 | 85.1 |
| MS.gene67001.t1 | AT1G68090 | 24.290 | 317 | 193 | 6 | 1 | 276 | 1 | 311 | 1.19e-17 | 81.6 |
| MS.gene67001.t1 | AT5G10220 | 25.163 | 306 | 179 | 8 | 14 | 276 | 14 | 312 | 1.52e-16 | 78.6 |
| MS.gene67001.t1 | AT2G38760 | 26.502 | 283 | 150 | 7 | 41 | 276 | 45 | 316 | 9.59e-16 | 76.3 |
| MS.gene67001.t1 | AT2G38750 | 24.415 | 299 | 171 | 10 | 30 | 280 | 27 | 318 | 8.85e-13 | 67.8 |
| MS.gene67001.t1 | AT2G38750 | 24.415 | 299 | 171 | 10 | 30 | 280 | 10 | 301 | 9.15e-13 | 67.8 |
Find 46 sgRNAs with CRISPR-Local
Find 89 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTTAGTTGTTGTCTTTCA+TGG | 0.132379 | 6.4:+3508634 | None:intergenic |
| TTGAGTTATAAACACATTTA+TGG | 0.143306 | 6.4:-3507927 | MS.gene67001:CDS |
| TGCAATCAAGCTCAAAATTA+TGG | 0.188023 | 6.4:+3508721 | None:intergenic |
| AAGAAAATTCATGATTCTTT+AGG | 0.228183 | 6.4:-3508699 | MS.gene67001:CDS |
| TTTGATTATGCAGATTCTTA+TGG | 0.279975 | 6.4:-3508120 | MS.gene67001:intron |
| AGGGGAAATTATGGACAATT+TGG | 0.287260 | 6.4:-3507756 | MS.gene67001:CDS |
| TGAGTTATAAACACATTTAT+GGG | 0.325057 | 6.4:-3507926 | MS.gene67001:CDS |
| TCTATCAAGAGGGGAAATTA+TGG | 0.325515 | 6.4:-3507765 | MS.gene67001:CDS |
| GAAACTGGAGAGGGAAGTTT+AGG | 0.354288 | 6.4:-3508020 | MS.gene67001:CDS |
| ACAATTTGGTAAAGCTCTAA+TGG | 0.400689 | 6.4:-3507742 | MS.gene67001:CDS |
| ACAAGATGAGACTAATTTCA+AGG | 0.417152 | 6.4:-3508460 | MS.gene67001:CDS |
| TAGACATGGATGAGATTAGA+AGG | 0.426400 | 6.4:-3507321 | MS.gene67001:CDS |
| GCAAGGAGGCTATATGAAAC+TGG | 0.431751 | 6.4:-3508035 | MS.gene67001:CDS |
| TAGAGACTTTCTAGTTGCCT+TGG | 0.448017 | 6.4:-3507230 | MS.gene67001:CDS |
| TGGCAAGAACATTGGTGAGC+AGG | 0.448364 | 6.4:-3507351 | MS.gene67001:CDS |
| CTTCAAAGATATGATGAAGA+TGG | 0.462062 | 6.4:-3508570 | MS.gene67001:CDS |
| GAGACTTATAAGACAGTGTA+TGG | 0.470950 | 6.4:-3508612 | MS.gene67001:CDS |
| CTCAAAATTATGGTTTGTCA+TGG | 0.471688 | 6.4:+3508731 | None:intergenic |
| TCCATGAAAGACAACAACTA+AGG | 0.478572 | 6.4:-3508635 | MS.gene67001:CDS |
| TAGTTGTTGTCTTTCATGGA+GGG | 0.498799 | 6.4:+3508638 | None:intergenic |
| GACTAATTTCAAGGCTCTTG+TGG | 0.499580 | 6.4:-3508451 | MS.gene67001:CDS |
| GAAAAGTATGAGAAGGAACT+TGG | 0.506704 | 6.4:-3507289 | MS.gene67001:CDS |
| GGCAAGAACATTGGTGAGCA+GGG | 0.507512 | 6.4:-3507350 | MS.gene67001:CDS |
| AAAATTCATGATTCTTTAGG+TGG | 0.509806 | 6.4:-3508696 | MS.gene67001:CDS |
| CATCACACTTAGATATATGA+TGG | 0.514420 | 6.4:+3508057 | None:intergenic |
| AGGAGGTTTGGCAAGAACAT+TGG | 0.546981 | 6.4:-3507359 | MS.gene67001:CDS |
| TATGATGGCTAATATCTGCT+TGG | 0.570576 | 6.4:+3508072 | None:intergenic |
| TTTCCAGGAAAAGTATGAGA+AGG | 0.576636 | 6.4:-3507296 | MS.gene67001:CDS |
| AACTATATGCAAGCATCAAG+AGG | 0.578258 | 6.4:-3507396 | MS.gene67001:CDS |
| CCATGAAAGACAACAACTAA+GGG | 0.584493 | 6.4:-3508634 | MS.gene67001:CDS |
| AGGGTTAAGCAAGCAAGAGA+TGG | 0.586151 | 6.4:+3508657 | None:intergenic |
| TTAGTTGTTGTCTTTCATGG+AGG | 0.604512 | 6.4:+3508637 | None:intergenic |
| TCAAGCATATTATTATGCAA+AGG | 0.609590 | 6.4:-3507697 | MS.gene67001:intron |
| ATGTGAAAGCATTCCATGTG+GGG | 0.625778 | 6.4:-3507257 | MS.gene67001:CDS |
| TATGTGAAAGCATTCCATGT+GGG | 0.626705 | 6.4:-3507258 | MS.gene67001:CDS |
| ACTATATGCAAGCATCAAGA+GGG | 0.628173 | 6.4:-3507395 | MS.gene67001:CDS |
| AGGCTATATGAAACTGGAGA+GGG | 0.640552 | 6.4:-3508029 | MS.gene67001:CDS |
| ACAAAAGCATCTCTATCATG+TGG | 0.642996 | 6.4:+3508501 | None:intergenic |
| ATTTGGTAAAGCTCTAATGG+TGG | 0.647291 | 6.4:-3507739 | MS.gene67001:CDS |
| GAGGCTATATGAAACTGGAG+AGG | 0.649820 | 6.4:-3508030 | MS.gene67001:CDS |
| ATATATCTAAGTGTGATGCA+AGG | 0.685196 | 6.4:-3508052 | MS.gene67001:CDS |
| GAGCAGGGCAGATATAGACA+TGG | 0.686297 | 6.4:-3507335 | MS.gene67001:CDS |
| AAGTCTCTATAATCCCCACA+TGG | 0.697353 | 6.4:+3507244 | None:intergenic |
| TATCTAAGTGTGATGCAAGG+AGG | 0.713979 | 6.4:-3508049 | MS.gene67001:CDS |
| TTATGGGCATGACTACACAA+AGG | 0.754823 | 6.4:-3507910 | MS.gene67001:intron |
| ATATGTGAAAGCATTCCATG+TGG | 0.785559 | 6.4:-3507259 | MS.gene67001:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATGAAAATAGATTAAATG+AGG | + | chr6.4:3508129-3508148 | None:intergenic | 15.0% |
| !! | TTTGCAAATTTAAAGAAAAA+AGG | - | chr6.4:3507816-3507835 | MS.gene67001:intron | 15.0% |
| !!! | AAAAGTAAAAACACAATTTT+TGG | + | chr6.4:3508382-3508401 | None:intergenic | 15.0% |
| !!! | TTAACAATTTGAGTTAATAA+TGG | - | chr6.4:3508545-3508564 | MS.gene67001:CDS | 15.0% |
| !! | AAGAAAATTCATGATTCTTT+AGG | - | chr6.4:3507269-3507288 | MS.gene67001:CDS | 20.0% |
| !! | AAGAAACAAAGATTAGAAAA+AGG | + | chr6.4:3508301-3508320 | None:intergenic | 20.0% |
| !! | AGAAACAAAGATTAGAAAAA+GGG | + | chr6.4:3508300-3508319 | None:intergenic | 20.0% |
| !! | CAAATATTGCTAACTTTAAT+CGG | - | chr6.4:3508482-3508501 | MS.gene67001:CDS | 20.0% |
| !! | TAAGTTAAGAGTTAAAAAGT+CGG | + | chr6.4:3507743-3507762 | None:intergenic | 20.0% |
| !! | TACAATTCTAATATTCGATT+AGG | + | chr6.4:3508525-3508544 | None:intergenic | 20.0% |
| !! | TGAGTTATAAACACATTTAT+GGG | - | chr6.4:3508042-3508061 | MS.gene67001:CDS | 20.0% |
| !! | TTGAGTTATAAACACATTTA+TGG | - | chr6.4:3508041-3508060 | MS.gene67001:CDS | 20.0% |
| !!! | AAAAATGTTAGTTTCAATTG+TGG | + | chr6.4:3508023-3508042 | None:intergenic | 20.0% |
| !!! | AAGTTAGCAATATTTGATTT+CGG | + | chr6.4:3508478-3508497 | None:intergenic | 20.0% |
| !!! | AATTTTCTACTTTGTCTTTA+TGG | - | chr6.4:3507435-3507454 | MS.gene67001:intron | 20.0% |
| !!! | TCTTCTACAAATTCTAATTT+TGG | - | chr6.4:3508317-3508336 | MS.gene67001:intron | 20.0% |
| ! | AAAATTCATGATTCTTTAGG+TGG | - | chr6.4:3507272-3507291 | MS.gene67001:CDS | 25.0% |
| ! | AAGTTAAGAGTTAAAAAGTC+GGG | + | chr6.4:3507742-3507761 | None:intergenic | 25.0% |
| ! | CAAAATGTTTAGAAGACAAT+TGG | - | chr6.4:3507595-3507614 | MS.gene67001:intron | 25.0% |
| ! | TCAAGCATATTATTATGCAA+AGG | - | chr6.4:3508271-3508290 | MS.gene67001:intron | 25.0% |
| ! | TTTGATTATGCAGATTCTTA+TGG | - | chr6.4:3507848-3507867 | MS.gene67001:intron | 25.0% |
| !!! | TTTGTTTTAGTCTATCAAGA+GGG | - | chr6.4:3508193-3508212 | MS.gene67001:intron | 25.0% |
| !!! | TTTTGTTTTAGTCTATCAAG+AGG | - | chr6.4:3508192-3508211 | MS.gene67001:intron | 25.0% |
| ACAAGATGAGACTAATTTCA+AGG | - | chr6.4:3507508-3507527 | MS.gene67001:intron | 30.0% | |
| ATATATCTAAGTGTGATGCA+AGG | - | chr6.4:3507916-3507935 | MS.gene67001:CDS | 30.0% | |
| ATGAGTGACTAAAAACACAT+TGG | - | chr6.4:3508419-3508438 | MS.gene67001:intron | 30.0% | |
| CATCACACTTAGATATATGA+TGG | + | chr6.4:3507914-3507933 | None:intergenic | 30.0% | |
| CTTAAACCAGTTGAACTTAT+TGG | - | chr6.4:3507759-3507778 | MS.gene67001:CDS | 30.0% | |
| CTTCAAAGATATGATGAAGA+TGG | - | chr6.4:3507398-3507417 | MS.gene67001:CDS | 30.0% | |
| GGACCAAGATATTATGAATT+TGG | - | chr6.4:3507616-3507635 | MS.gene67001:intron | 30.0% | |
| GGTCCAAATTCATAATATCT+TGG | + | chr6.4:3507622-3507641 | None:intergenic | 30.0% | |
| TAAATGAGGCAAGAAAAAAG+AGG | + | chr6.4:3508115-3508134 | None:intergenic | 30.0% | |
| TATTGGCAAACACTCTTTAT+CGG | - | chr6.4:3507776-3507795 | MS.gene67001:intron | 30.0% | |
| TGCAATCAAGCTCAAAATTA+TGG | + | chr6.4:3507250-3507269 | None:intergenic | 30.0% | |
| ! | ACAATTTGGTAAAGCTCTAA+TGG | - | chr6.4:3508226-3508245 | MS.gene67001:intron | 30.0% |
| ! | CAATTTGAGTTAATAATGGC+AGG | - | chr6.4:3508549-3508568 | MS.gene67001:CDS | 30.0% |
| ! | CTCAAAATTATGGTTTGTCA+TGG | + | chr6.4:3507240-3507259 | None:intergenic | 30.0% |
| !! | CATATCCTTACCTTTTGAAA+TGG | + | chr6.4:3507653-3507672 | None:intergenic | 30.0% |
| !!! | TTGTTTTAGTCTATCAAGAG+GGG | - | chr6.4:3508194-3508213 | MS.gene67001:intron | 30.0% |
| AAAAAGAGACATAGGAGGTT+TGG | - | chr6.4:3508597-3508616 | MS.gene67001:CDS | 35.0% | |
| AACTATATGCAAGCATCAAG+AGG | - | chr6.4:3508572-3508591 | MS.gene67001:CDS | 35.0% | |
| AAGAGGGAAAAAAGAGACAT+AGG | - | chr6.4:3508589-3508608 | MS.gene67001:CDS | 35.0% | |
| ACTATATGCAAGCATCAAGA+GGG | - | chr6.4:3508573-3508592 | MS.gene67001:CDS | 35.0% | |
| AGGGGAAATTATGGACAATT+TGG | - | chr6.4:3508212-3508231 | MS.gene67001:intron | 35.0% | |
| CACATCCATTTCAAAAGGTA+AGG | - | chr6.4:3507645-3507664 | MS.gene67001:intron | 35.0% | |
| CCATGAAAGACAACAACTAA+GGG | - | chr6.4:3507334-3507353 | MS.gene67001:CDS | 35.0% | |
| GAGACTTATAAGACAGTGTA+TGG | - | chr6.4:3507356-3507375 | MS.gene67001:CDS | 35.0% | |
| TAGACATGGATGAGATTAGA+AGG | - | chr6.4:3508647-3508666 | MS.gene67001:CDS | 35.0% | |
| TAGTTGTTGTCTTTCATGGA+GGG | + | chr6.4:3507333-3507352 | None:intergenic | 35.0% | |
| TATGATGGCTAATATCTGCT+TGG | + | chr6.4:3507899-3507918 | None:intergenic | 35.0% | |
| TCCATGAAAGACAACAACTA+AGG | - | chr6.4:3507333-3507352 | MS.gene67001:CDS | 35.0% | |
| TCTATCAAGAGGGGAAATTA+TGG | - | chr6.4:3508203-3508222 | MS.gene67001:intron | 35.0% | |
| TGTTTGCCAATAAGTTCAAC+TGG | + | chr6.4:3507768-3507787 | None:intergenic | 35.0% | |
| TTAGTTGTTGTCTTTCATGG+AGG | + | chr6.4:3507334-3507353 | None:intergenic | 35.0% | |
| ! | ACATGATAGAGATGCTTTTG+TGG | - | chr6.4:3507469-3507488 | MS.gene67001:intron | 35.0% |
| ! | ATTTGGTAAAGCTCTAATGG+TGG | - | chr6.4:3508229-3508248 | MS.gene67001:intron | 35.0% |
| ! | GAAAAGTATGAGAAGGAACT+TGG | - | chr6.4:3508679-3508698 | MS.gene67001:CDS | 35.0% |
| ! | TGAGATTAGAAGGATTTTCC+AGG | - | chr6.4:3508657-3508676 | MS.gene67001:CDS | 35.0% |
| ! | TTGTGGAGATTTTTGTAGGT+AGG | - | chr6.4:3507534-3507553 | MS.gene67001:intron | 35.0% |
| ! | TTTCCAGGAAAAGTATGAGA+AGG | - | chr6.4:3508672-3508691 | MS.gene67001:CDS | 35.0% |
| !! | ACAAAAGCATCTCTATCATG+TGG | + | chr6.4:3507470-3507489 | None:intergenic | 35.0% |
| !! | ATATGTGAAAGCATTCCATG+TGG | - | chr6.4:3508709-3508728 | MS.gene67001:CDS | 35.0% |
| !! | TATGTGAAAGCATTCCATGT+GGG | - | chr6.4:3508710-3508729 | MS.gene67001:CDS | 35.0% |
| !!! | CTTACCTTTTGAAATGGATG+TGG | + | chr6.4:3507647-3507666 | None:intergenic | 35.0% |
| AAGTCTCTATAATCCCCACA+TGG | + | chr6.4:3508727-3508746 | None:intergenic | 40.0% | |
| AGGCTATATGAAACTGGAGA+GGG | - | chr6.4:3507939-3507958 | MS.gene67001:CDS | 40.0% | |
| AGGGAAAAAAGAGACATAGG+AGG | - | chr6.4:3508592-3508611 | MS.gene67001:CDS | 40.0% | |
| CCCTTAGTTGTTGTCTTTCA+TGG | + | chr6.4:3507337-3507356 | None:intergenic | 40.0% | |
| GACTAATTTCAAGGCTCTTG+TGG | - | chr6.4:3507517-3507536 | MS.gene67001:intron | 40.0% | |
| TATCTAAGTGTGATGCAAGG+AGG | - | chr6.4:3507919-3507938 | MS.gene67001:CDS | 40.0% | |
| TTATGGGCATGACTACACAA+AGG | - | chr6.4:3508058-3508077 | MS.gene67001:CDS | 40.0% | |
| ! | ATAGAGATGCTTTTGTGGCT+AGG | - | chr6.4:3507474-3507493 | MS.gene67001:intron | 40.0% |
| ! | GCTCTTGTGGAGATTTTTGT+AGG | - | chr6.4:3507530-3507549 | MS.gene67001:intron | 40.0% |
| ! | GTTCCTTCTCATACTTTTCC+TGG | + | chr6.4:3508678-3508697 | None:intergenic | 40.0% |
| ! | TAGAGATGCTTTTGTGGCTA+GGG | - | chr6.4:3507475-3507494 | MS.gene67001:intron | 40.0% |
| !! | ATGTGAAAGCATTCCATGTG+GGG | - | chr6.4:3508711-3508730 | MS.gene67001:CDS | 40.0% |
| !! | TAGAGACTTTCTAGTTGCCT+TGG | - | chr6.4:3508738-3508757 | MS.gene67001:CDS | 40.0% |
| !!! | ACCTTTTGAAATGGATGTGG+AGG | + | chr6.4:3507644-3507663 | None:intergenic | 40.0% |
| !!! | CCTTTTGAAATGGATGTGGA+GGG | + | chr6.4:3507643-3507662 | None:intergenic | 40.0% |
| AAAAGTCGGGTCTCAAACTC+TGG | + | chr6.4:3507729-3507748 | None:intergenic | 45.0% | |
| AGGAGGTTTGGCAAGAACAT+TGG | - | chr6.4:3508609-3508628 | MS.gene67001:CDS | 45.0% | |
| AGGGTTAAGCAAGCAAGAGA+TGG | + | chr6.4:3507314-3507333 | None:intergenic | 45.0% | |
| CCCTCCACATCCATTTCAAA+AGG | - | chr6.4:3507640-3507659 | MS.gene67001:intron | 45.0% | |
| GAAACTGGAGAGGGAAGTTT+AGG | - | chr6.4:3507948-3507967 | MS.gene67001:CDS | 45.0% | |
| GAGGCTATATGAAACTGGAG+AGG | - | chr6.4:3507938-3507957 | MS.gene67001:CDS | 45.0% | |
| GCAAGGAGGCTATATGAAAC+TGG | - | chr6.4:3507933-3507952 | MS.gene67001:CDS | 45.0% | |
| GAGCAGGGCAGATATAGACA+TGG | - | chr6.4:3508633-3508652 | MS.gene67001:CDS | 50.0% | |
| GGCAAGAACATTGGTGAGCA+GGG | - | chr6.4:3508618-3508637 | MS.gene67001:CDS | 50.0% | |
| TGGCAAGAACATTGGTGAGC+AGG | - | chr6.4:3508617-3508636 | MS.gene67001:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 3507218 | 3508772 | 3507218 | ID=MS.gene67001 |
| chr6.4 | mRNA | 3507218 | 3508772 | 3507218 | ID=MS.gene67001.t1;Parent=MS.gene67001 |
| chr6.4 | exon | 3508443 | 3508772 | 3508443 | ID=MS.gene67001.t1.exon1;Parent=MS.gene67001.t1 |
| chr6.4 | CDS | 3508443 | 3508772 | 3508443 | ID=cds.MS.gene67001.t1;Parent=MS.gene67001.t1 |
| chr6.4 | exon | 3507911 | 3508129 | 3507911 | ID=MS.gene67001.t1.exon2;Parent=MS.gene67001.t1 |
| chr6.4 | CDS | 3507911 | 3508129 | 3507911 | ID=cds.MS.gene67001.t1;Parent=MS.gene67001.t1 |
| chr6.4 | exon | 3507698 | 3507787 | 3507698 | ID=MS.gene67001.t1.exon3;Parent=MS.gene67001.t1 |
| chr6.4 | CDS | 3507698 | 3507787 | 3507698 | ID=cds.MS.gene67001.t1;Parent=MS.gene67001.t1 |
| chr6.4 | exon | 3507218 | 3507419 | 3507218 | ID=MS.gene67001.t1.exon4;Parent=MS.gene67001.t1 |
| chr6.4 | CDS | 3507218 | 3507419 | 3507218 | ID=cds.MS.gene67001.t1;Parent=MS.gene67001.t1 |
| Gene Sequence |
| Protein sequence |
