Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene67190.t1 | XP_003590760.1 | 98.2 | 671 | 12 | 0 | 1 | 671 | 1 | 671 | 0.00E+00 | 1302.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene67190.t1 | Q9SS87 | 31.2 | 711 | 406 | 21 | 23 | 664 | 34 | 730 | 5.2e-82 | 307.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene67190.t1 | E2FKJ6 | 98.2 | 671 | 12 | 0 | 1 | 671 | 1 | 671 | 0.0e+00 | 1302.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene053811 | MS.gene67190 | 0.801898 | 7.25E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene67190.t1 | MTR_1g074950 | 98.212 | 671 | 12 | 0 | 1 | 671 | 1 | 671 | 0.0 | 1353 |
MS.gene67190.t1 | MTR_1g074990 | 58.982 | 668 | 266 | 5 | 9 | 671 | 5 | 669 | 0.0 | 813 |
MS.gene67190.t1 | MTR_1g075095 | 58.462 | 650 | 263 | 5 | 18 | 663 | 17 | 663 | 0.0 | 764 |
MS.gene67190.t1 | MTR_1g075030 | 58.154 | 650 | 265 | 5 | 18 | 663 | 17 | 663 | 0.0 | 764 |
MS.gene67190.t1 | MTR_1g075230 | 55.389 | 668 | 290 | 6 | 1 | 664 | 1 | 664 | 0.0 | 730 |
MS.gene67190.t1 | MTR_1g040360 | 38.864 | 669 | 384 | 11 | 20 | 670 | 24 | 685 | 9.77e-154 | 461 |
MS.gene67190.t1 | MTR_7g032660 | 33.286 | 700 | 393 | 19 | 25 | 663 | 25 | 711 | 1.61e-106 | 339 |
MS.gene67190.t1 | MTR_1g075153 | 33.815 | 692 | 387 | 22 | 6 | 668 | 19 | 668 | 9.75e-104 | 330 |
MS.gene67190.t1 | MTR_1g075180 | 33.235 | 677 | 391 | 18 | 13 | 667 | 3 | 640 | 1.00e-103 | 330 |
MS.gene67190.t1 | MTR_8g089660 | 32.521 | 698 | 402 | 20 | 23 | 662 | 17 | 703 | 4.96e-102 | 327 |
MS.gene67190.t1 | MTR_3g075450 | 31.753 | 696 | 410 | 18 | 19 | 661 | 21 | 704 | 3.70e-101 | 325 |
MS.gene67190.t1 | MTR_1g075170 | 33.333 | 672 | 382 | 22 | 21 | 662 | 31 | 666 | 1.84e-98 | 317 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene67190.t1 | AT3G01680 | 31.224 | 711 | 406 | 21 | 23 | 664 | 34 | 730 | 2.68e-97 | 315 |
MS.gene67190.t1 | AT3G01670 | 26.412 | 708 | 431 | 20 | 23 | 661 | 158 | 844 | 2.46e-60 | 217 |
MS.gene67190.t1 | AT3G01670 | 26.412 | 708 | 431 | 20 | 23 | 661 | 134 | 820 | 2.63e-60 | 217 |
MS.gene67190.t1 | AT1G67790 | 23.714 | 700 | 426 | 29 | 24 | 659 | 9 | 664 | 6.80e-36 | 144 |
Find 121 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTGCATTTGCACTTGAATT+TGG | 0.156452 | 1.2:-57622845 | MS.gene67190:CDS |
AAATTCCTGTTGATGTTTAC+TGG | 0.193634 | 1.2:-57622580 | MS.gene67190:CDS |
AAAACCTCGTAAGTCGATTT+TGG | 0.196891 | 1.2:-57619824 | MS.gene67190:CDS |
CACAGTGGTGAACTAAAATT+AGG | 0.261006 | 1.2:+57623647 | None:intergenic |
CATTGAATTTATACTTGAAT+TGG | 0.266351 | 1.2:-57622663 | MS.gene67190:CDS |
AGTAAATTTGTTCCAAAATC+TGG | 0.278229 | 1.2:+57623902 | None:intergenic |
TTGTGTCATACCTATCATTA+AGG | 0.284079 | 1.2:+57622636 | None:intergenic |
CTTGAAATTCCTATTGTTGC+TGG | 0.287322 | 1.2:-57619528 | MS.gene67190:CDS |
CACAAAGGTTGTTCCTGCTT+TGG | 0.316333 | 1.2:-57622618 | MS.gene67190:CDS |
CAATGCAAATGCAAAGCATT+AGG | 0.317178 | 1.2:-57619421 | None:intergenic |
TATCACTGAGCTTAATAGTT+TGG | 0.318395 | 1.2:-57622705 | MS.gene67190:CDS |
ATGAACAATACAAGATTGTT+TGG | 0.318857 | 1.2:-57620778 | MS.gene67190:CDS |
CACTTGAATTTGGAGAGTTC+TGG | 0.324265 | 1.2:-57622835 | MS.gene67190:CDS |
AATTGGATTACCTTAATGAT+AGG | 0.331280 | 1.2:-57622646 | MS.gene67190:CDS |
ATTTCATCATCCATTGTAAA+GGG | 0.342752 | 1.2:+57620524 | None:intergenic |
CATGTCTGATGACCAGATTT+TGG | 0.359547 | 1.2:-57623914 | MS.gene67190:CDS |
CTTACCAATGTGGAAATGTT+GGG | 0.364875 | 1.2:+57620449 | None:intergenic |
TTTCAGCAAAGCCACAGATT+TGG | 0.367784 | 1.2:+57622778 | None:intergenic |
CCTCAGAAGAAATTGACTTC+AGG | 0.370214 | 1.2:+57623621 | None:intergenic |
GTAACAGTTTCTTAAGCTCT+TGG | 0.377322 | 1.2:+57622072 | None:intergenic |
AATGCAAATGCAAAGCATTA+GGG | 0.386839 | 1.2:-57619420 | None:intergenic |
TGCTGCCATTGTTACTCAGT+TGG | 0.397237 | 1.2:-57622543 | MS.gene67190:CDS |
GTTCCTCAGTTGCTTTATGA+TGG | 0.403939 | 1.2:-57621996 | MS.gene67190:CDS |
TCAAGTTCATTAATGAAGAA+TGG | 0.407316 | 1.2:-57620649 | MS.gene67190:CDS |
CTGTGGCTGAATTTGAGAAA+TGG | 0.418335 | 1.2:-57619638 | MS.gene67190:CDS |
CTCAGAAGAAATTGACTTCA+GGG | 0.418551 | 1.2:+57623622 | None:intergenic |
GAATTCAAAAGGACAGGAAC+TGG | 0.425070 | 1.2:-57620499 | MS.gene67190:CDS |
TCCATGGTGCTAGGACAATC+AGG | 0.433171 | 1.2:+57619480 | None:intergenic |
GGTAACTTTCCAGCAACAAT+AGG | 0.436825 | 1.2:+57619519 | None:intergenic |
CAGCAACAATAGGAATTTCA+AGG | 0.438861 | 1.2:+57619529 | None:intergenic |
TATTTCATCATCCATTGTAA+AGG | 0.440057 | 1.2:+57620523 | None:intergenic |
ATAGTCCAGTAAACATCAAC+AGG | 0.440292 | 1.2:+57622575 | None:intergenic |
GTGTGAAAGCTTGTTCAGTA+TGG | 0.441244 | 1.2:+57622901 | None:intergenic |
CAAGTTCATTAATGAAGAAT+GGG | 0.444482 | 1.2:-57620648 | MS.gene67190:CDS |
TGCTTGCTCCAAGCTTACTT+TGG | 0.448220 | 1.2:+57623688 | None:intergenic |
TTGTGTGCAATTTCCTCACT+TGG | 0.452426 | 1.2:+57622935 | None:intergenic |
TCTCAACCTCACCAGCTGAT+AGG | 0.454244 | 1.2:+57623950 | None:intergenic |
AACTGGATTGTATCTGTTGT+AGG | 0.459816 | 1.2:-57620482 | MS.gene67190:CDS |
ACTTACCAATGTGGAAATGT+TGG | 0.463912 | 1.2:+57620448 | None:intergenic |
GATCAAGTCGTATGGAATCA+AGG | 0.464070 | 1.2:-57620552 | MS.gene67190:CDS |
AAGCAAGAACTTTCGCACTA+TGG | 0.467506 | 1.2:-57622371 | MS.gene67190:CDS |
GAATTGCTGCAGGCTTTGCT+AGG | 0.467942 | 1.2:+57622744 | None:intergenic |
CTTAAGAGTATCTTTGATGA+TGG | 0.470957 | 1.2:+57623978 | None:intergenic |
TGTGCAATTTCCTCACTTGG+TGG | 0.473616 | 1.2:+57622938 | None:intergenic |
ACAGGGTACCAAAGTAAGCT+TGG | 0.476570 | 1.2:-57623696 | MS.gene67190:intron |
TGGTCATCAGACATGGTCAA+TGG | 0.479920 | 1.2:+57623922 | None:intergenic |
AAAGATGTTGTTATCAAGAA+GGG | 0.481066 | 1.2:-57619615 | MS.gene67190:CDS |
ACGGTCTGTCGTCAACAAAT+AGG | 0.482946 | 1.2:-57622305 | MS.gene67190:intron |
TTCCATACGACTTGATCAAA+TGG | 0.486886 | 1.2:+57620558 | None:intergenic |
ACAAGCTTTCACACTATGAC+TGG | 0.487294 | 1.2:-57622892 | MS.gene67190:CDS |
ATGAAAATCTCCATGGTGCT+AGG | 0.497376 | 1.2:+57619471 | None:intergenic |
CTAATGCTTTGCATTTGCAT+TGG | 0.498540 | 1.2:+57619422 | None:intergenic |
AGCAACTGAGGAACACCCTT+GGG | 0.498957 | 1.2:+57622005 | None:intergenic |
TGATGAAATAAGAATTCAAA+AGG | 0.499915 | 1.2:-57620510 | MS.gene67190:CDS |
TCGTTCCATCCTTCGACGAT+TGG | 0.501165 | 1.2:+57620752 | None:intergenic |
GGTCATCAGACATGGTCAAT+GGG | 0.501771 | 1.2:+57623923 | None:intergenic |
ACAGTGGTGAACTAAAATTA+GGG | 0.503940 | 1.2:+57623648 | None:intergenic |
GAAAGATGTTGTTATCAAGA+AGG | 0.504611 | 1.2:-57619616 | MS.gene67190:CDS |
ACGGCGGTCATGACAAAGAA+TGG | 0.506245 | 1.2:-57619947 | MS.gene67190:CDS |
AAAGATACGAACCGTAGTCT+TGG | 0.515674 | 1.2:+57621968 | None:intergenic |
TTCCATTTGATCAAGTCGTA+TGG | 0.517131 | 1.2:-57620560 | MS.gene67190:CDS |
CATTTGCATTGGTCTTATTG+TGG | 0.517809 | 1.2:+57619433 | None:intergenic |
TATTAAGCTCAGTGATAGCT+TGG | 0.519222 | 1.2:+57622711 | None:intergenic |
TTGCATACTTAGTGAACTGT+TGG | 0.520031 | 1.2:+57619922 | None:intergenic |
GTGAACTAAAATTAGGGAGA+AGG | 0.522131 | 1.2:+57623654 | None:intergenic |
CCTGAAGTCAATTTCTTCTG+AGG | 0.526682 | 1.2:-57623621 | MS.gene67190:intron |
GGATTCCAATCGTCGAAGGA+TGG | 0.528389 | 1.2:-57620757 | MS.gene67190:CDS |
CAAGGCTTTCCCCTTTACAA+TGG | 0.529512 | 1.2:-57620534 | MS.gene67190:CDS |
CAACAGATGGTCCTTTGCTA+AGG | 0.530605 | 1.2:+57619694 | None:intergenic |
AAATAAGAATTCAAAAGGAC+AGG | 0.531992 | 1.2:-57620505 | MS.gene67190:CDS |
TTTGTGGTGTTTAGTCCTCA+AGG | 0.535506 | 1.2:-57620605 | MS.gene67190:CDS |
TTGTGTTGCACCTTTCCTTG+AGG | 0.539203 | 1.2:+57620590 | None:intergenic |
CAGAACGTCGAAAACATAGC+TGG | 0.541431 | 1.2:-57620674 | MS.gene67190:CDS |
GTCAACATAAAAGAGTTCAA+TGG | 0.542195 | 1.2:+57619857 | None:intergenic |
TGTTTCTACTCTAGATGTCA+CGG | 0.542607 | 1.2:-57620849 | MS.gene67190:CDS |
AGCACCACTGTTATTTCAGT+GGG | 0.543302 | 1.2:+57622044 | None:intergenic |
GAAAATGTGCTTGTTCTGCT+CGG | 0.546952 | 1.2:+57619974 | None:intergenic |
ATGAGTGACACGAGCAACAT+TGG | 0.547153 | 1.2:+57619563 | None:intergenic |
CTTAAGACTCTCCTATCAGC+TGG | 0.547460 | 1.2:-57623961 | MS.gene67190:CDS |
AGTTGCATCGTTTGCAAGAG+CGG | 0.549462 | 1.2:+57619899 | None:intergenic |
TGAACTAAAATTAGGGAGAA+GGG | 0.550441 | 1.2:+57623655 | None:intergenic |
CATTGTTGACAGTGTTGTGC+AGG | 0.556795 | 1.2:-57623797 | MS.gene67190:intron |
GCTGCAGGCTTTGCTAGGAT+CGG | 0.562793 | 1.2:+57622749 | None:intergenic |
GTTTGGATTCCAATCGTCGA+AGG | 0.569856 | 1.2:-57620761 | MS.gene67190:CDS |
AAGAGTATCTTTGATGATGG+TGG | 0.573589 | 1.2:+57623981 | None:intergenic |
CGAAAATTTACTTACCAATG+TGG | 0.576128 | 1.2:+57620439 | None:intergenic |
AAGCAACTGAGGAACACCCT+TGG | 0.576598 | 1.2:+57622004 | None:intergenic |
TCATATGCAAGCTCCAAAGC+AGG | 0.578263 | 1.2:+57622605 | None:intergenic |
TGACCCCAACATTTCCACAT+TGG | 0.582734 | 1.2:-57620453 | MS.gene67190:intron |
ATAGCTAATGAAAATCTCCA+TGG | 0.585071 | 1.2:+57619464 | None:intergenic |
CAAAATCTGGTCATCAGACA+TGG | 0.587143 | 1.2:+57623915 | None:intergenic |
TGTGTCACTGTGGACATGTG+TGG | 0.587756 | 1.2:+57623879 | None:intergenic |
AAAGCCACAGATTTGGCAAG+TGG | 0.592499 | 1.2:+57622785 | None:intergenic |
GACTCTCCTATCAGCTGGTG+AGG | 0.594811 | 1.2:-57623956 | MS.gene67190:CDS |
CAAGCTTTCACACTATGACT+GGG | 0.595446 | 1.2:-57622891 | MS.gene67190:CDS |
AAGCACCACTGTTATTTCAG+TGG | 0.599341 | 1.2:+57622043 | None:intergenic |
TTTCATCATCCATTGTAAAG+GGG | 0.599778 | 1.2:+57620525 | None:intergenic |
TGATGGTGCTACCAAGACTA+CGG | 0.600087 | 1.2:-57621979 | MS.gene67190:intron |
GGTGTTTAGTCCTCAAGGAA+AGG | 0.602732 | 1.2:-57620600 | MS.gene67190:CDS |
TGACCACTCAAAACAACAGA+TGG | 0.602962 | 1.2:+57619681 | None:intergenic |
TTACCAATGTGGAAATGTTG+GGG | 0.606447 | 1.2:+57620450 | None:intergenic |
GAGTAAGATGCCATGGTATG+TGG | 0.608793 | 1.2:-57620699 | MS.gene67190:CDS |
CACTCCAAAATCGACTTACG+AGG | 0.610640 | 1.2:+57619820 | None:intergenic |
GTCATGCAAGCCACCAAGTG+AGG | 0.613274 | 1.2:-57622948 | MS.gene67190:CDS |
AAGCCACAGATTTGGCAAGT+GGG | 0.620286 | 1.2:+57622786 | None:intergenic |
GTGCAAGTGTGTTCTGAGCA+AGG | 0.627072 | 1.2:+57623830 | None:intergenic |
GCAATCCAACTGAGTAACAA+TGG | 0.628416 | 1.2:+57622538 | None:intergenic |
TCTGCTTCCTCAGTCTGCTG+AGG | 0.629344 | 1.2:+57622330 | None:intergenic |
AGACCCACTTGCCAAATCTG+TGG | 0.631402 | 1.2:-57622789 | MS.gene67190:CDS |
AAACTTACGATTCAGTGATG+AGG | 0.634674 | 1.2:+57622516 | None:intergenic |
TCCTGATTGTCCTAGCACCA+TGG | 0.635274 | 1.2:-57619481 | MS.gene67190:CDS |
GGTTGGGCTCTCCTTAGCAA+AGG | 0.640640 | 1.2:-57619705 | MS.gene67190:CDS |
ACGTTCTGCACCACATACCA+TGG | 0.645434 | 1.2:+57620689 | None:intergenic |
CAGACTGAGGAAGCAGATCA+CGG | 0.654516 | 1.2:-57622324 | MS.gene67190:CDS |
ACATCATCCTCAGCAGACTG+AGG | 0.659543 | 1.2:-57622337 | MS.gene67190:CDS |
TAATGATAGGTATGACACAA+AGG | 0.667392 | 1.2:-57622633 | MS.gene67190:CDS |
TACAACAATTCTCAAAACTG+TGG | 0.669361 | 1.2:-57619655 | MS.gene67190:CDS |
GCACCATCATAAAGCAACTG+AGG | 0.688596 | 1.2:+57621993 | None:intergenic |
AACTCCCACTGAAATAACAG+TGG | 0.711449 | 1.2:-57622048 | MS.gene67190:CDS |
TTCTACTCTAGATGTCACGG+AGG | 0.776640 | 1.2:-57620846 | MS.gene67190:CDS |
ATTGACTTCAGGGTGCACAG+TGG | 0.784198 | 1.2:+57623632 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ACAAATTAATAAAAATTAAG+AGG | + | chr1.2:57622482-57622501 | None:intergenic | 10.0% |
!! | ATACTAAATAAATAAAGTAA+AGG | + | chr1.2:57621206-57621225 | None:intergenic | 10.0% |
!! | TAGAAATTAACATAATAAAA+TGG | + | chr1.2:57620258-57620277 | None:intergenic | 10.0% |
!! | TTAAAACATATTAAAAAGTA+CGG | + | chr1.2:57620966-57620985 | None:intergenic | 10.0% |
!!! | AAATTTCTAATATTTTTCTT+TGG | + | chr1.2:57621767-57621786 | None:intergenic | 10.0% |
!!! | ATAAAGGATATTTAATTTAA+GGG | + | chr1.2:57619667-57619686 | None:intergenic | 10.0% |
!!! | TATAAAGGATATTTAATTTA+AGG | + | chr1.2:57619668-57619687 | None:intergenic | 10.0% |
!!! | TTTATTCATATTAGTTTAAT+TGG | + | chr1.2:57620347-57620366 | None:intergenic | 10.0% |
!! | AGAAAAATATTAGAAATTTG+TGG | - | chr1.2:57621768-57621787 | MS.gene67190:intron | 15.0% |
!! | ATAAATTCTAATGAAATTGA+TGG | - | chr1.2:57622215-57622234 | MS.gene67190:intron | 15.0% |
!!! | AAAATTTGTTTTAAACATGT+AGG | + | chr1.2:57622124-57622143 | None:intergenic | 15.0% |
!!! | AATATAAATTAGTTCTAATG+TGG | - | chr1.2:57621279-57621298 | MS.gene67190:intron | 15.0% |
!!! | ACTAATTTTATTAATTATGC+AGG | - | chr1.2:57621007-57621026 | MS.gene67190:intron | 15.0% |
!!! | ATAATAGTTAGAATTTTTAC+AGG | - | chr1.2:57619693-57619712 | MS.gene67190:CDS | 15.0% |
!!! | CTAATTTTATTAATTATGCA+GGG | - | chr1.2:57621008-57621027 | MS.gene67190:intron | 15.0% |
!!! | TAATAGTTAGAATTTTTACA+GGG | - | chr1.2:57619694-57619713 | MS.gene67190:CDS | 15.0% |
!!! | TTACAATCATATTTTGATTT+TGG | - | chr1.2:57623244-57623263 | MS.gene67190:intron | 15.0% |
!! | CAATTTGGTATATATTCAAA+GGG | - | chr1.2:57621946-57621965 | MS.gene67190:intron | 20.0% |
!! | CATTGAATTTATACTTGAAT+TGG | - | chr1.2:57620744-57620763 | MS.gene67190:CDS | 20.0% |
!! | CGAGATAAATATGAAAAAAA+GGG | - | chr1.2:57622359-57622378 | MS.gene67190:CDS | 20.0% |
!! | TCAATTTGGTATATATTCAA+AGG | - | chr1.2:57621945-57621964 | MS.gene67190:intron | 20.0% |
!! | TGATGAAATAAGAATTCAAA+AGG | - | chr1.2:57622897-57622916 | MS.gene67190:CDS | 20.0% |
!! | TTTCATGAAATTTACATGTT+TGG | + | chr1.2:57623124-57623143 | None:intergenic | 20.0% |
!!! | ATGTAAAGAACGTTAAATTT+TGG | - | chr1.2:57623029-57623048 | MS.gene67190:intron | 20.0% |
!!! | CCTTTTTTTCATATTTATCT+CGG | + | chr1.2:57622361-57622380 | None:intergenic | 20.0% |
!!! | TAGAAAAGTTGATATCAATT+TGG | - | chr1.2:57621931-57621950 | MS.gene67190:intron | 20.0% |
!!! | TATTATTAGTGTTTTGTTGA+TGG | - | chr1.2:57622415-57622434 | MS.gene67190:intron | 20.0% |
!!! | TGTAAAGAACGTTAAATTTT+GGG | - | chr1.2:57623030-57623049 | MS.gene67190:intron | 20.0% |
! | AAAAACAAACATCATACACA+TGG | - | chr1.2:57619869-57619888 | MS.gene67190:CDS | 25.0% |
! | AAAATGAGTACAAAACTTTG+TGG | - | chr1.2:57621537-57621556 | MS.gene67190:intron | 25.0% |
! | AAAGATGTTGTTATCAAGAA+GGG | - | chr1.2:57623792-57623811 | MS.gene67190:intron | 25.0% |
! | AAATAAGAATTCAAAAGGAC+AGG | - | chr1.2:57622902-57622921 | MS.gene67190:CDS | 25.0% |
! | AATTGGATTACCTTAATGAT+AGG | - | chr1.2:57620761-57620780 | MS.gene67190:CDS | 25.0% |
! | ATGAACAATACAAGATTGTT+TGG | - | chr1.2:57622629-57622648 | MS.gene67190:CDS | 25.0% |
! | ATTTCATCATCCATTGTAAA+GGG | + | chr1.2:57622886-57622905 | None:intergenic | 25.0% |
! | CAAGTTCATTAATGAAGAAT+GGG | - | chr1.2:57622759-57622778 | MS.gene67190:CDS | 25.0% |
! | CCGAGATAAATATGAAAAAA+AGG | - | chr1.2:57622358-57622377 | MS.gene67190:CDS | 25.0% |
! | GTAAATTTCTTGATCTCTAA+CGG | - | chr1.2:57621128-57621147 | MS.gene67190:intron | 25.0% |
! | TATTTCATCATCCATTGTAA+AGG | + | chr1.2:57622887-57622906 | None:intergenic | 25.0% |
! | TCAAGTTCATTAATGAAGAA+TGG | - | chr1.2:57622758-57622777 | MS.gene67190:CDS | 25.0% |
! | TTACAAAAATGAAACTGGTT+GGG | - | chr1.2:57623686-57623705 | MS.gene67190:CDS | 25.0% |
! | TTGTCTTACAAAAATGAAAC+TGG | - | chr1.2:57623681-57623700 | MS.gene67190:CDS | 25.0% |
!! | AGTAAATTTGTTCCAAAATC+TGG | + | chr1.2:57619508-57619527 | None:intergenic | 25.0% |
!! | GCAAGAAATTCGATATTTTA+AGG | - | chr1.2:57622686-57622705 | MS.gene67190:CDS | 25.0% |
!! | TTTTTCATATTTATCTCGGT+TGG | + | chr1.2:57622357-57622376 | None:intergenic | 25.0% |
!!! | ATCAGTTGTTTTGTGAATTT+TGG | + | chr1.2:57623634-57623653 | None:intergenic | 25.0% |
!!! | ATGTGTATGATGTTTGTTTT+TGG | + | chr1.2:57619870-57619889 | None:intergenic | 25.0% |
AAATTCCTGTTGATGTTTAC+TGG | - | chr1.2:57620827-57620846 | MS.gene67190:CDS | 30.0% | |
ACAGTGGTGAACTAAAATTA+GGG | + | chr1.2:57619762-57619781 | None:intergenic | 30.0% | |
AGAAACACGTGTCATAATAA+TGG | - | chr1.2:57621828-57621847 | MS.gene67190:intron | 30.0% | |
ATAGCTAATGAAAATCTCCA+TGG | + | chr1.2:57623946-57623965 | None:intergenic | 30.0% | |
ATTATTATGACACGTGTTTC+TGG | + | chr1.2:57621829-57621848 | None:intergenic | 30.0% | |
CAAAAAGAAGTCTATGTTTG+TGG | - | chr1.2:57622786-57622805 | MS.gene67190:CDS | 30.0% | |
CGAAAATTTACTTACCAATG+TGG | + | chr1.2:57622971-57622990 | None:intergenic | 30.0% | |
CTTACAAAAATGAAACTGGT+TGG | - | chr1.2:57623685-57623704 | MS.gene67190:CDS | 30.0% | |
GAAACACGTGTCATAATAAT+GGG | - | chr1.2:57621829-57621848 | MS.gene67190:intron | 30.0% | |
GAAAGATGTTGTTATCAAGA+AGG | - | chr1.2:57623791-57623810 | MS.gene67190:intron | 30.0% | |
GTCAACATAAAAGAGTTCAA+TGG | + | chr1.2:57623553-57623572 | None:intergenic | 30.0% | |
TAAATAGGCAAGAAGAGAAA+AGG | + | chr1.2:57622271-57622290 | None:intergenic | 30.0% | |
TAATGATAGGTATGACACAA+AGG | - | chr1.2:57620774-57620793 | MS.gene67190:CDS | 30.0% | |
TACAACAATTCTCAAAACTG+TGG | - | chr1.2:57623752-57623771 | MS.gene67190:intron | 30.0% | |
TATCACTGAGCTTAATAGTT+TGG | - | chr1.2:57620702-57620721 | MS.gene67190:CDS | 30.0% | |
TATCTCTGCAATTATCTACA+TGG | - | chr1.2:57620281-57620300 | MS.gene67190:intron | 30.0% | |
TGAACTAAAATTAGGGAGAA+GGG | + | chr1.2:57619755-57619774 | None:intergenic | 30.0% | |
TTCAAAGGGACTTATCAATT+TGG | - | chr1.2:57621960-57621979 | MS.gene67190:intron | 30.0% | |
TTGTGTCATACCTATCATTA+AGG | + | chr1.2:57620774-57620793 | None:intergenic | 30.0% | |
TTTCATCATCCATTGTAAAG+GGG | + | chr1.2:57622885-57622904 | None:intergenic | 30.0% | |
! | AACAAGCACATTTTCTTCTA+CGG | - | chr1.2:57623441-57623460 | MS.gene67190:intron | 30.0% |
! | TGAACTCTTTTATGTTGACA+AGG | - | chr1.2:57623554-57623573 | MS.gene67190:intron | 30.0% |
! | TGGTAAGTAAATTTTCGACT+TGG | - | chr1.2:57622974-57622993 | MS.gene67190:intron | 30.0% |
! | TGTTAGCTTAATGCTTAGAA+TGG | + | chr1.2:57622453-57622472 | None:intergenic | 30.0% |
!! | ATTAATTTGTTAAACCGTGC+AGG | - | chr1.2:57622492-57622511 | MS.gene67190:intron | 30.0% |
!! | CTTAAGAGTATCTTTGATGA+TGG | + | chr1.2:57619432-57619451 | None:intergenic | 30.0% |
AAACTTACGATTCAGTGATG+AGG | + | chr1.2:57620894-57620913 | None:intergenic | 35.0% | |
AACATTAATGTCAACCTGCA+CGG | + | chr1.2:57622509-57622528 | None:intergenic | 35.0% | |
AACTGGATTGTATCTGTTGT+AGG | - | chr1.2:57622925-57622944 | MS.gene67190:CDS | 35.0% | |
ACTTACCAATGTGGAAATGT+TGG | + | chr1.2:57622962-57622981 | None:intergenic | 35.0% | |
ATAGTCCAGTAAACATCAAC+AGG | + | chr1.2:57620835-57620854 | None:intergenic | 35.0% | |
CACAGTGGTGAACTAAAATT+AGG | + | chr1.2:57619763-57619782 | None:intergenic | 35.0% | |
CAGCAACAATAGGAATTTCA+AGG | + | chr1.2:57623881-57623900 | None:intergenic | 35.0% | |
CTAATGCTTTGCATTTGCAT+TGG | + | chr1.2:57623988-57624007 | None:intergenic | 35.0% | |
CTTACCAATGTGGAAATGTT+GGG | + | chr1.2:57622961-57622980 | None:intergenic | 35.0% | |
CTTGAAATTCCTATTGTTGC+TGG | - | chr1.2:57623879-57623898 | MS.gene67190:CDS | 35.0% | |
GAAAAGGTAACTTCTATGCA+AGG | + | chr1.2:57622255-57622274 | None:intergenic | 35.0% | |
GCTTCTCTCTTTAAATCTCA+CGG | - | chr1.2:57623071-57623090 | MS.gene67190:intron | 35.0% | |
GTAACAGTTTCTTAAGCTCT+TGG | + | chr1.2:57621338-57621357 | None:intergenic | 35.0% | |
GTGAACTAAAATTAGGGAGA+AGG | + | chr1.2:57619756-57619775 | None:intergenic | 35.0% | |
TATTAAGCTCAGTGATAGCT+TGG | + | chr1.2:57620699-57620718 | None:intergenic | 35.0% | |
TCTGCATTTGCACTTGAATT+TGG | - | chr1.2:57620562-57620581 | MS.gene67190:CDS | 35.0% | |
TTACAACTTCAGCAGATAGA+CGG | - | chr1.2:57623097-57623116 | MS.gene67190:intron | 35.0% | |
TTACCAATGTGGAAATGTTG+GGG | + | chr1.2:57622960-57622979 | None:intergenic | 35.0% | |
TTCCATACGACTTGATCAAA+TGG | + | chr1.2:57622852-57622871 | None:intergenic | 35.0% | |
TTCCATTTGATCAAGTCGTA+TGG | - | chr1.2:57622847-57622866 | MS.gene67190:CDS | 35.0% | |
TTGCATACTTAGTGAACTGT+TGG | + | chr1.2:57623488-57623507 | None:intergenic | 35.0% | |
! | CTCAGAAGAAATTGACTTCA+GGG | + | chr1.2:57619788-57619807 | None:intergenic | 35.0% |
! | TCAGGACATTTTATAGTCTC+AGG | + | chr1.2:57623912-57623931 | None:intergenic | 35.0% |
! | TCGTTTCTGATTTTTCCCAA+GGG | - | chr1.2:57621387-57621406 | MS.gene67190:intron | 35.0% |
! | TGTTTCTACTCTAGATGTCA+CGG | - | chr1.2:57622558-57622577 | MS.gene67190:CDS | 35.0% |
! | TTCGTTTCTGATTTTTCCCA+AGG | - | chr1.2:57621386-57621405 | MS.gene67190:intron | 35.0% |
!! | AAAACCTCGTAAGTCGATTT+TGG | - | chr1.2:57623583-57623602 | MS.gene67190:intron | 35.0% |
!! | AAAGGTGTTTGAATCCTCAT+CGG | + | chr1.2:57621188-57621207 | None:intergenic | 35.0% |
!! | AAGAGTATCTTTGATGATGG+TGG | + | chr1.2:57619429-57619448 | None:intergenic | 35.0% |
!! | AGTATGGTGTTACAGTTGTA+AGG | + | chr1.2:57621155-57621174 | None:intergenic | 35.0% |
!! | CATCAAATTTTGTGTCACTG+TGG | + | chr1.2:57619541-57619560 | None:intergenic | 35.0% |
!! | CATTTGCATTGGTCTTATTG+TGG | + | chr1.2:57623977-57623996 | None:intergenic | 35.0% |
!! | TTTTAAGGAGTAAGATGCCA+TGG | - | chr1.2:57622701-57622720 | MS.gene67190:CDS | 35.0% |
AAAGATACGAACCGTAGTCT+TGG | + | chr1.2:57621442-57621461 | None:intergenic | 40.0% | |
AACAACATACTGCACAACTG+TGG | + | chr1.2:57623005-57623024 | None:intergenic | 40.0% | |
AACTCCCACTGAAATAACAG+TGG | - | chr1.2:57621359-57621378 | MS.gene67190:intron | 40.0% | |
AAGCAAGAACTTTCGCACTA+TGG | - | chr1.2:57621036-57621055 | MS.gene67190:intron | 40.0% | |
ACAAGCTTTCACACTATGAC+TGG | - | chr1.2:57620515-57620534 | MS.gene67190:CDS | 40.0% | |
ATGAAAATCTCCATGGTGCT+AGG | + | chr1.2:57623939-57623958 | None:intergenic | 40.0% | |
CAAAATCTGGTCATCAGACA+TGG | + | chr1.2:57619495-57619514 | None:intergenic | 40.0% | |
CAAGCTTTCACACTATGACT+GGG | - | chr1.2:57620516-57620535 | MS.gene67190:CDS | 40.0% | |
CACTTGAATTTGGAGAGTTC+TGG | - | chr1.2:57620572-57620591 | MS.gene67190:CDS | 40.0% | |
CATCGGATACAGATGTAGTA+TGG | + | chr1.2:57621171-57621190 | None:intergenic | 40.0% | |
CCTGAAGTCAATTTCTTCTG+AGG | - | chr1.2:57619786-57619805 | MS.gene67190:CDS | 40.0% | |
CTGTGGCTGAATTTGAGAAA+TGG | - | chr1.2:57623769-57623788 | MS.gene67190:intron | 40.0% | |
GAAAATGTGCTTGTTCTGCT+CGG | + | chr1.2:57623436-57623455 | None:intergenic | 40.0% | |
GAATTCAAAAGGACAGGAAC+TGG | - | chr1.2:57622908-57622927 | MS.gene67190:CDS | 40.0% | |
GATCAAGTCGTATGGAATCA+AGG | - | chr1.2:57622855-57622874 | MS.gene67190:CDS | 40.0% | |
GCAATCCAACTGAGTAACAA+TGG | + | chr1.2:57620872-57620891 | None:intergenic | 40.0% | |
GGTAACTTTCCAGCAACAAT+AGG | + | chr1.2:57623891-57623910 | None:intergenic | 40.0% | |
GTCTATCTGCTGAAGTTGTA+AGG | + | chr1.2:57623098-57623117 | None:intergenic | 40.0% | |
TACTACATCTGTATCCGATG+AGG | - | chr1.2:57621171-57621190 | MS.gene67190:intron | 40.0% | |
TGACCACTCAAAACAACAGA+TGG | + | chr1.2:57623729-57623748 | None:intergenic | 40.0% | |
TTGTGTGCAATTTCCTCACT+TGG | + | chr1.2:57620475-57620494 | None:intergenic | 40.0% | |
TTTCAGCAAAGCCACAGATT+TGG | + | chr1.2:57620632-57620651 | None:intergenic | 40.0% | |
TTTGTGGTGTTTAGTCCTCA+AGG | - | chr1.2:57622802-57622821 | MS.gene67190:CDS | 40.0% | |
! | AAGCACATTTTCTTCTACGG+CGG | - | chr1.2:57623444-57623463 | MS.gene67190:intron | 40.0% |
! | CATGTCTGATGACCAGATTT+TGG | - | chr1.2:57619493-57619512 | MS.gene67190:CDS | 40.0% |
! | CCTCAGAAGAAATTGACTTC+AGG | + | chr1.2:57619789-57619808 | None:intergenic | 40.0% |
! | GTGTGAAAGCTTGTTCAGTA+TGG | + | chr1.2:57620509-57620528 | None:intergenic | 40.0% |
! | GTTCCTCAGTTGCTTTATGA+TGG | - | chr1.2:57621411-57621430 | MS.gene67190:intron | 40.0% |
!! | AAGCACCACTGTTATTTCAG+TGG | + | chr1.2:57621367-57621386 | None:intergenic | 40.0% |
!! | AGCACCACTGTTATTTCAGT+GGG | + | chr1.2:57621366-57621385 | None:intergenic | 40.0% |
!! | CGATGTTTTTGAATTGCTGC+AGG | + | chr1.2:57620676-57620695 | None:intergenic | 40.0% |
!!! | TCTGTTGTTTTGAGTGGTCA+TGG | - | chr1.2:57623729-57623748 | MS.gene67190:intron | 40.0% |
AAAGCCACAGATTTGGCAAG+TGG | + | chr1.2:57620625-57620644 | None:intergenic | 45.0% | |
AACATACTGCACAACTGTGG+AGG | + | chr1.2:57623002-57623021 | None:intergenic | 45.0% | |
AAGCCACAGATTTGGCAAGT+GGG | + | chr1.2:57620624-57620643 | None:intergenic | 45.0% | |
ACGGTCTGTCGTCAACAAAT+AGG | - | chr1.2:57621102-57621121 | MS.gene67190:intron | 45.0% | |
AGTTGCATCGTTTGCAAGAG+CGG | + | chr1.2:57623511-57623530 | None:intergenic | 45.0% | |
ATGAGTGACACGAGCAACAT+TGG | + | chr1.2:57623847-57623866 | None:intergenic | 45.0% | |
CAACAGATGGTCCTTTGCTA+AGG | + | chr1.2:57623716-57623735 | None:intergenic | 45.0% | |
CAAGGCTTTCCCCTTTACAA+TGG | - | chr1.2:57622873-57622892 | MS.gene67190:CDS | 45.0% | |
CACAAAGGTTGTTCCTGCTT+TGG | - | chr1.2:57620789-57620808 | MS.gene67190:CDS | 45.0% | |
CAGAACGTCGAAAACATAGC+TGG | - | chr1.2:57622733-57622752 | MS.gene67190:CDS | 45.0% | |
CATTGTTGACAGTGTTGTGC+AGG | - | chr1.2:57619610-57619629 | MS.gene67190:CDS | 45.0% | |
CTTAAGACTCTCCTATCAGC+TGG | - | chr1.2:57619446-57619465 | MS.gene67190:CDS | 45.0% | |
GAGTAAGATGCCATGGTATG+TGG | - | chr1.2:57622708-57622727 | MS.gene67190:CDS | 45.0% | |
GCACCATCATAAAGCAACTG+AGG | + | chr1.2:57621417-57621436 | None:intergenic | 45.0% | |
GGTCATCAGACATGGTCAAT+GGG | + | chr1.2:57619487-57619506 | None:intergenic | 45.0% | |
GGTGTTTAGTCCTCAAGGAA+AGG | - | chr1.2:57622807-57622826 | MS.gene67190:CDS | 45.0% | |
GTTTGGATTCCAATCGTCGA+AGG | - | chr1.2:57622646-57622665 | MS.gene67190:CDS | 45.0% | |
TCATATGCAAGCTCCAAAGC+AGG | + | chr1.2:57620805-57620824 | None:intergenic | 45.0% | |
TGACCCCAACATTTCCACAT+TGG | - | chr1.2:57622954-57622973 | MS.gene67190:intron | 45.0% | |
TGCTGCCATTGTTACTCAGT+TGG | - | chr1.2:57620864-57620883 | MS.gene67190:CDS | 45.0% | |
TGCTTGCTCCAAGCTTACTT+TGG | + | chr1.2:57619722-57619741 | None:intergenic | 45.0% | |
TGGTCATCAGACATGGTCAA+TGG | + | chr1.2:57619488-57619507 | None:intergenic | 45.0% | |
TGTGCAATTTCCTCACTTGG+TGG | + | chr1.2:57620472-57620491 | None:intergenic | 45.0% | |
TTCTACTCTAGATGTCACGG+AGG | - | chr1.2:57622561-57622580 | MS.gene67190:CDS | 45.0% | |
TTGTGTTGCACCTTTCCTTG+AGG | + | chr1.2:57622820-57622839 | None:intergenic | 45.0% | |
! | ACAGGGTACCAAAGTAAGCT+TGG | - | chr1.2:57619711-57619730 | MS.gene67190:CDS | 45.0% |
! | CACTCCAAAATCGACTTACG+AGG | + | chr1.2:57623590-57623609 | None:intergenic | 45.0% |
! | TGGGAGAGAAGCGATTTTAG+TGG | - | chr1.2:57623049-57623068 | MS.gene67190:intron | 45.0% |
!! | CTCGTAAGTCGATTTTGGAG+TGG | - | chr1.2:57623588-57623607 | MS.gene67190:intron | 45.0% |
!! | TGATGGTGCTACCAAGACTA+CGG | - | chr1.2:57621428-57621447 | MS.gene67190:intron | 45.0% |
!!! | GGACCATCTGTTGTTTTGAG+TGG | - | chr1.2:57623723-57623742 | MS.gene67190:intron | 45.0% |
!! | TAACTATTATAATTATATAA+AGG | + | chr1.2:57619683-57619702 | None:intergenic | 5.0% |
!! | TATTATACAAAAAATTAAAT+AGG | + | chr1.2:57622286-57622305 | None:intergenic | 5.0% |
!! | TGAAATTTATAAAAAAAATA+CGG | - | chr1.2:57622014-57622033 | MS.gene67190:CDS | 5.0% |
AAGCAACTGAGGAACACCCT+TGG | + | chr1.2:57621406-57621425 | None:intergenic | 50.0% | |
ACATCATCCTCAGCAGACTG+AGG | - | chr1.2:57621070-57621089 | MS.gene67190:intron | 50.0% | |
ACGGCGGTCATGACAAAGAA+TGG | - | chr1.2:57623460-57623479 | MS.gene67190:intron | 50.0% | |
ACGTTCTGCACCACATACCA+TGG | + | chr1.2:57622721-57622740 | None:intergenic | 50.0% | |
AGACCCACTTGCCAAATCTG+TGG | - | chr1.2:57620618-57620637 | MS.gene67190:CDS | 50.0% | |
AGCAACTGAGGAACACCCTT+GGG | + | chr1.2:57621405-57621424 | None:intergenic | 50.0% | |
CAGACTGAGGAAGCAGATCA+CGG | - | chr1.2:57621083-57621102 | MS.gene67190:intron | 50.0% | |
GAATTGCTGCAGGCTTTGCT+AGG | + | chr1.2:57620666-57620685 | None:intergenic | 50.0% | |
GGATTCCAATCGTCGAAGGA+TGG | - | chr1.2:57622650-57622669 | MS.gene67190:CDS | 50.0% | |
TCCTGATTGTCCTAGCACCA+TGG | - | chr1.2:57623926-57623945 | MS.gene67190:CDS | 50.0% | |
TCGTTCCATCCTTCGACGAT+TGG | + | chr1.2:57622658-57622677 | None:intergenic | 50.0% | |
TCTCAACCTCACCAGCTGAT+AGG | + | chr1.2:57619460-57619479 | None:intergenic | 50.0% | |
! | ATTGACTTCAGGGTGCACAG+TGG | + | chr1.2:57619778-57619797 | None:intergenic | 50.0% |
! | GTGCAAGTGTGTTCTGAGCA+AGG | + | chr1.2:57619580-57619599 | None:intergenic | 50.0% |
! | TCCATGGTGCTAGGACAATC+AGG | + | chr1.2:57623930-57623949 | None:intergenic | 50.0% |
! | TGTGTCACTGTGGACATGTG+TGG | + | chr1.2:57619531-57619550 | None:intergenic | 50.0% |
GACTCTCCTATCAGCTGGTG+AGG | - | chr1.2:57619451-57619470 | MS.gene67190:CDS | 55.0% | |
GCTGCAGGCTTTGCTAGGAT+CGG | + | chr1.2:57620661-57620680 | None:intergenic | 55.0% | |
GGTTGGGCTCTCCTTAGCAA+AGG | - | chr1.2:57623702-57623721 | MS.gene67190:intron | 55.0% | |
GTCATGCAAGCCACCAAGTG+AGG | - | chr1.2:57620459-57620478 | MS.gene67190:CDS | 55.0% | |
TCTGCTTCCTCAGTCTGCTG+AGG | + | chr1.2:57621080-57621099 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 57619422 | 57624007 | 57619422 | ID=MS.gene67190 |
chr1.2 | mRNA | 57619422 | 57624007 | 57619422 | ID=MS.gene67190.t1;Parent=MS.gene67190 |
chr1.2 | exon | 57623798 | 57624007 | 57623798 | ID=MS.gene67190.t1.exon1;Parent=MS.gene67190.t1 |
chr1.2 | CDS | 57623798 | 57624007 | 57623798 | ID=cds.MS.gene67190.t1;Parent=MS.gene67190.t1 |
chr1.2 | exon | 57623622 | 57623714 | 57623622 | ID=MS.gene67190.t1.exon2;Parent=MS.gene67190.t1 |
chr1.2 | CDS | 57623622 | 57623714 | 57623622 | ID=cds.MS.gene67190.t1;Parent=MS.gene67190.t1 |
chr1.2 | exon | 57622524 | 57622972 | 57622524 | ID=MS.gene67190.t1.exon3;Parent=MS.gene67190.t1 |
chr1.2 | CDS | 57622524 | 57622972 | 57622524 | ID=cds.MS.gene67190.t1;Parent=MS.gene67190.t1 |
chr1.2 | exon | 57622306 | 57622400 | 57622306 | ID=MS.gene67190.t1.exon4;Parent=MS.gene67190.t1 |
chr1.2 | CDS | 57622306 | 57622400 | 57622306 | ID=cds.MS.gene67190.t1;Parent=MS.gene67190.t1 |
chr1.2 | exon | 57621980 | 57622110 | 57621980 | ID=MS.gene67190.t1.exon5;Parent=MS.gene67190.t1 |
chr1.2 | CDS | 57621980 | 57622110 | 57621980 | ID=cds.MS.gene67190.t1;Parent=MS.gene67190.t1 |
chr1.2 | exon | 57620454 | 57620915 | 57620454 | ID=MS.gene67190.t1.exon6;Parent=MS.gene67190.t1 |
chr1.2 | CDS | 57620454 | 57620915 | 57620454 | ID=cds.MS.gene67190.t1;Parent=MS.gene67190.t1 |
chr1.2 | exon | 57619422 | 57619997 | 57619422 | ID=MS.gene67190.t1.exon7;Parent=MS.gene67190.t1 |
chr1.2 | CDS | 57619422 | 57619997 | 57619422 | ID=cds.MS.gene67190.t1;Parent=MS.gene67190.t1 |
Gene Sequence |
Protein sequence |