Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053811.t1 | XP_003614638.1 | 96.5 | 395 | 14 | 0 | 1 | 395 | 1 | 395 | 3.70E-220 | 773.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053811.t1 | Q9C942 | 35.5 | 290 | 184 | 3 | 103 | 391 | 36 | 323 | 2.5e-47 | 191.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053811.t1 | G7K1K2 | 96.5 | 395 | 14 | 0 | 1 | 395 | 1 | 395 | 2.7e-220 | 773.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04933 | MS.gene053811 | 0.817619 | 3.00E-52 | -1.69E-46 |
| MS.gene050226 | MS.gene053811 | 0.832953 | 7.04E-56 | -1.69E-46 |
| MS.gene050227 | MS.gene053811 | 0.838212 | 3.29E-57 | -1.69E-46 |
| MS.gene050228 | MS.gene053811 | 0.82746 | 1.55E-54 | -1.69E-46 |
| MS.gene050762 | MS.gene053811 | 0.838324 | 3.08E-57 | -1.69E-46 |
| MS.gene050763 | MS.gene053811 | 0.837603 | 4.71E-57 | -1.69E-46 |
| MS.gene050780 | MS.gene053811 | 0.817676 | 2.91E-52 | -1.69E-46 |
| MS.gene050826 | MS.gene053811 | 0.81112 | 8.21E-51 | -1.69E-46 |
| MS.gene051860 | MS.gene053811 | 0.800215 | 1.60E-48 | -1.69E-46 |
| MS.gene053147 | MS.gene053811 | 0.82734 | 1.65E-54 | -1.69E-46 |
| MS.gene053811 | MS.gene054379 | 0.823028 | 1.73E-53 | -1.69E-46 |
| MS.gene053811 | MS.gene054467 | 0.813076 | 3.07E-51 | -1.69E-46 |
| MS.gene053811 | MS.gene054468 | 0.846521 | 2.06E-59 | -1.69E-46 |
| MS.gene053811 | MS.gene054581 | 0.810222 | 1.28E-50 | -1.69E-46 |
| MS.gene053811 | MS.gene05468 | 0.8204 | 7.00E-53 | -1.69E-46 |
| MS.gene053811 | MS.gene057469 | 0.827851 | 1.25E-54 | -1.69E-46 |
| MS.gene053811 | MS.gene057929 | 0.823684 | 1.21E-53 | -1.69E-46 |
| MS.gene053811 | MS.gene059664 | 0.859896 | 3.01E-63 | -1.69E-46 |
| MS.gene053811 | MS.gene062564 | 0.826591 | 2.49E-54 | -1.69E-46 |
| MS.gene053811 | MS.gene063498 | 0.821944 | 3.08E-53 | -1.69E-46 |
| MS.gene053811 | MS.gene065826 | 0.806905 | 6.55E-50 | -1.69E-46 |
| MS.gene053811 | MS.gene066433 | 0.817162 | 3.81E-52 | -1.69E-46 |
| MS.gene053811 | MS.gene066716 | 0.82147 | 3.97E-53 | -1.69E-46 |
| MS.gene053811 | MS.gene066896 | 0.805671 | 1.19E-49 | -1.69E-46 |
| MS.gene053811 | MS.gene06705 | 0.806141 | 9.50E-50 | -1.69E-46 |
| MS.gene053811 | MS.gene06921 | 0.807601 | 4.67E-50 | -1.69E-46 |
| MS.gene053811 | MS.gene06922 | 0.818173 | 2.25E-52 | -1.69E-46 |
| MS.gene053811 | MS.gene069868 | -0.841052 | 6.00E-58 | -1.69E-46 |
| MS.gene053811 | MS.gene07115 | 0.856363 | 3.38E-62 | -1.69E-46 |
| MS.gene053811 | MS.gene071438 | -0.821922 | 3.12E-53 | -1.69E-46 |
| MS.gene053811 | MS.gene072564 | 0.801943 | 7.09E-49 | -1.69E-46 |
| MS.gene053811 | MS.gene072632 | 0.808539 | 2.95E-50 | -1.69E-46 |
| MS.gene053811 | MS.gene07263 | 0.809932 | 1.48E-50 | -1.69E-46 |
| MS.gene053811 | MS.gene07536 | 0.835781 | 1.37E-56 | -1.69E-46 |
| MS.gene053811 | MS.gene09647 | 0.820363 | 7.14E-53 | -1.69E-46 |
| MS.gene053811 | MS.gene20784 | 0.807781 | 4.27E-50 | -1.69E-46 |
| MS.gene053811 | MS.gene20835 | 0.80875 | 2.66E-50 | -1.69E-46 |
| MS.gene053811 | MS.gene21460 | 0.840011 | 1.12E-57 | -1.69E-46 |
| MS.gene053811 | MS.gene22820 | -0.80117 | 1.02E-48 | -1.69E-46 |
| MS.gene053811 | MS.gene23103 | 0.812264 | 4.63E-51 | -1.69E-46 |
| MS.gene053811 | MS.gene24417 | 0.802539 | 5.35E-49 | -1.69E-46 |
| MS.gene053811 | MS.gene27492 | 0.818057 | 2.39E-52 | -1.69E-46 |
| MS.gene053811 | MS.gene27500 | 0.805556 | 1.26E-49 | -1.69E-46 |
| MS.gene053811 | MS.gene28405 | 0.806429 | 8.26E-50 | -1.69E-46 |
| MS.gene053811 | MS.gene29000 | 0.81379 | 2.14E-51 | -1.69E-46 |
| MS.gene053811 | MS.gene31059 | 0.809182 | 2.15E-50 | -1.69E-46 |
| MS.gene053811 | MS.gene32892 | 0.827457 | 1.55E-54 | -1.69E-46 |
| MS.gene053811 | MS.gene32894 | 0.837165 | 6.11E-57 | -1.69E-46 |
| MS.gene053811 | MS.gene33527 | 0.811292 | 7.53E-51 | -1.69E-46 |
| MS.gene053811 | MS.gene36374 | 0.806616 | 7.54E-50 | -1.69E-46 |
| MS.gene053811 | MS.gene36677 | 0.856992 | 2.21E-62 | -1.69E-46 |
| MS.gene053811 | MS.gene36899 | 0.801834 | 7.47E-49 | -1.69E-46 |
| MS.gene053811 | MS.gene37647 | 0.812082 | 5.07E-51 | -1.69E-46 |
| MS.gene053811 | MS.gene40119 | 0.810918 | 9.08E-51 | -1.69E-46 |
| MS.gene053811 | MS.gene40837 | -0.805522 | 1.28E-49 | -1.69E-46 |
| MS.gene053811 | MS.gene42548 | 0.803607 | 3.22E-49 | -1.69E-46 |
| MS.gene053811 | MS.gene43587 | 0.818821 | 1.60E-52 | -1.69E-46 |
| MS.gene053811 | MS.gene44649 | 0.833891 | 4.11E-56 | -1.69E-46 |
| MS.gene053811 | MS.gene45193 | 0.801218 | 9.99E-49 | -1.69E-46 |
| MS.gene053811 | MS.gene48575 | 0.815822 | 7.59E-52 | -1.69E-46 |
| MS.gene053811 | MS.gene48577 | 0.83426 | 3.32E-56 | -1.69E-46 |
| MS.gene053811 | MS.gene49003 | 0.813459 | 2.53E-51 | -1.69E-46 |
| MS.gene053811 | MS.gene50436 | 0.820745 | 5.83E-53 | -1.69E-46 |
| MS.gene053811 | MS.gene50884 | 0.812806 | 3.52E-51 | -1.69E-46 |
| MS.gene053811 | MS.gene51182 | 0.814008 | 1.92E-51 | -1.69E-46 |
| MS.gene053811 | MS.gene51574 | 0.806245 | 9.03E-50 | -1.69E-46 |
| MS.gene053811 | MS.gene53771 | 0.811189 | 7.93E-51 | -1.69E-46 |
| MS.gene053811 | MS.gene56018 | 0.803404 | 3.54E-49 | -1.69E-46 |
| MS.gene053811 | MS.gene56290 | 0.810821 | 9.53E-51 | -1.69E-46 |
| MS.gene053811 | MS.gene57162 | -0.802757 | 4.82E-49 | -1.69E-46 |
| MS.gene053811 | MS.gene58049 | 0.817368 | 3.42E-52 | -1.69E-46 |
| MS.gene053811 | MS.gene58092 | 0.822176 | 2.72E-53 | -1.69E-46 |
| MS.gene053811 | MS.gene58468 | 0.82007 | 8.33E-53 | -1.69E-46 |
| MS.gene053811 | MS.gene62154 | 0.806095 | 9.71E-50 | -1.69E-46 |
| MS.gene053811 | MS.gene63003 | 0.825686 | 4.09E-54 | -1.69E-46 |
| MS.gene053811 | MS.gene63039 | 0.942478 | 6.70E-102 | -1.69E-46 |
| MS.gene053811 | MS.gene63507 | 0.801593 | 8.37E-49 | -1.69E-46 |
| MS.gene053811 | MS.gene63887 | 0.816519 | 5.30E-52 | -1.69E-46 |
| MS.gene053811 | MS.gene65684 | 0.902741 | 7.11E-79 | -1.69E-46 |
| MS.gene053811 | MS.gene67141 | 0.800071 | 1.71E-48 | -1.69E-46 |
| MS.gene053811 | MS.gene67190 | 0.801898 | 7.25E-49 | -1.69E-46 |
| MS.gene053811 | MS.gene68115 | 0.818131 | 2.30E-52 | -1.69E-46 |
| MS.gene053811 | MS.gene68718 | 0.801715 | 7.90E-49 | -1.69E-46 |
| MS.gene053811 | MS.gene68938 | 0.817515 | 3.17E-52 | -1.69E-46 |
| MS.gene053811 | MS.gene69794 | 0.845588 | 3.70E-59 | -1.69E-46 |
| MS.gene053811 | MS.gene70237 | 0.819119 | 1.37E-52 | -1.69E-46 |
| MS.gene053811 | MS.gene71468 | 0.818306 | 2.10E-52 | -1.69E-46 |
| MS.gene053811 | MS.gene76533 | -0.834465 | 2.95E-56 | -1.69E-46 |
| MS.gene053811 | MS.gene76554 | 0.80232 | 5.93E-49 | -1.69E-46 |
| MS.gene053811 | MS.gene77584 | -0.81252 | 4.07E-51 | -1.69E-46 |
| MS.gene053811 | MS.gene78251 | -0.822633 | 2.13E-53 | -1.69E-46 |
| MS.gene053811 | MS.gene78252 | -0.811266 | 7.63E-51 | -1.69E-46 |
| MS.gene053811 | MS.gene79290 | 0.80576 | 1.14E-49 | -1.69E-46 |
| MS.gene053811 | MS.gene80298 | 0.814132 | 1.80E-51 | -1.69E-46 |
| MS.gene053811 | MS.gene81381 | 0.822512 | 2.28E-53 | -1.69E-46 |
| MS.gene053811 | MS.gene82319 | 0.824602 | 7.38E-54 | -1.69E-46 |
| MS.gene053811 | MS.gene82321 | 0.800395 | 1.47E-48 | -1.69E-46 |
| MS.gene053811 | MS.gene85149 | -0.836424 | 9.43E-57 | -1.69E-46 |
| MS.gene053811 | MS.gene87115 | 0.82829 | 9.76E-55 | -1.69E-46 |
| MS.gene053811 | MS.gene87264 | 0.827082 | 1.90E-54 | -1.69E-46 |
| MS.gene053811 | MS.gene87685 | 0.809142 | 2.19E-50 | -1.69E-46 |
| MS.gene053811 | MS.gene88672 | -0.819374 | 1.20E-52 | -1.69E-46 |
| MS.gene053811 | MS.gene88831 | -0.802054 | 6.73E-49 | -1.69E-46 |
| MS.gene053811 | MS.gene90829 | 0.802567 | 5.28E-49 | -1.69E-46 |
| MS.gene053811 | MS.gene90938 | 0.801394 | 9.19E-49 | -1.69E-46 |
| MS.gene053811 | MS.gene91645 | 0.820128 | 8.08E-53 | -1.69E-46 |
| MS.gene053811 | MS.gene92755 | 0.813424 | 2.58E-51 | -1.69E-46 |
| MS.gene053811 | MS.gene92763 | 0.809286 | 2.04E-50 | -1.69E-46 |
| MS.gene053811 | MS.gene93892 | 0.815653 | 8.28E-52 | -1.69E-46 |
| MS.gene053811 | MS.gene96378 | 0.816487 | 5.39E-52 | -1.69E-46 |
| MS.gene053811 | MS.gene96656 | 0.942473 | 6.75E-102 | -1.69E-46 |
| MS.gene053811 | MS.gene98848 | 0.813748 | 2.19E-51 | -1.69E-46 |
| MS.gene053811 | MS.gene99802 | 0.813651 | 2.30E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene022183 | MS.gene053811 | PPI |
| MS.gene042920 | MS.gene053811 | PPI |
| MS.gene72606 | MS.gene053811 | PPI |
| MS.gene93966 | MS.gene053811 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053811.t1 | MTR_5g056550 | 96.456 | 395 | 14 | 0 | 1 | 395 | 1 | 395 | 0.0 | 792 |
| MS.gene053811.t1 | MTR_5g056550 | 88.101 | 395 | 14 | 1 | 1 | 395 | 1 | 362 | 0.0 | 708 |
| MS.gene053811.t1 | MTR_1g110670 | 64.810 | 395 | 101 | 5 | 1 | 393 | 1 | 359 | 0.0 | 528 |
| MS.gene053811.t1 | MTR_5g056550 | 94.309 | 246 | 14 | 0 | 1 | 246 | 1 | 246 | 4.08e-178 | 497 |
| MS.gene053811.t1 | MTR_5g056550 | 94.694 | 245 | 13 | 0 | 1 | 245 | 1 | 245 | 1.11e-176 | 492 |
| MS.gene053811.t1 | MTR_7g007260 | 58.912 | 331 | 135 | 1 | 59 | 389 | 7 | 336 | 4.65e-144 | 413 |
| MS.gene053811.t1 | MTR_6g084420 | 54.706 | 340 | 152 | 2 | 57 | 395 | 4 | 342 | 1.04e-140 | 404 |
| MS.gene053811.t1 | MTR_6g018490 | 55.255 | 333 | 148 | 1 | 59 | 391 | 6 | 337 | 9.27e-139 | 399 |
| MS.gene053811.t1 | MTR_7g007260 | 56.798 | 331 | 129 | 2 | 59 | 389 | 7 | 323 | 1.19e-133 | 386 |
| MS.gene053811.t1 | MTR_7g007260 | 56.928 | 332 | 128 | 3 | 59 | 389 | 7 | 324 | 9.76e-133 | 384 |
| MS.gene053811.t1 | MTR_6g025610 | 58.333 | 288 | 119 | 1 | 104 | 391 | 41 | 327 | 5.87e-127 | 369 |
| MS.gene053811.t1 | MTR_1g115535 | 46.207 | 290 | 155 | 1 | 104 | 393 | 11 | 299 | 6.53e-94 | 285 |
| MS.gene053811.t1 | MTR_1g115535 | 46.207 | 290 | 155 | 1 | 104 | 393 | 7 | 295 | 8.21e-94 | 284 |
| MS.gene053811.t1 | MTR_1g088470 | 45.614 | 285 | 154 | 1 | 107 | 391 | 8 | 291 | 2.58e-89 | 273 |
| MS.gene053811.t1 | MTR_7g108770 | 44.170 | 283 | 156 | 1 | 107 | 389 | 8 | 288 | 1.57e-85 | 264 |
| MS.gene053811.t1 | MTR_4g089170 | 39.209 | 278 | 169 | 0 | 115 | 392 | 47 | 324 | 2.19e-71 | 227 |
| MS.gene053811.t1 | MTR_4g127220 | 36.770 | 291 | 181 | 3 | 103 | 392 | 27 | 315 | 1.67e-58 | 193 |
| MS.gene053811.t1 | MTR_1g095110 | 34.532 | 278 | 178 | 4 | 113 | 388 | 37 | 312 | 4.35e-54 | 182 |
| MS.gene053811.t1 | MTR_6g071475 | 33.562 | 292 | 172 | 12 | 107 | 391 | 114 | 390 | 1.15e-32 | 127 |
| MS.gene053811.t1 | MTR_1g110680 | 54.206 | 107 | 45 | 1 | 287 | 393 | 4 | 106 | 3.20e-30 | 112 |
| MS.gene053811.t1 | MTR_3g109870 | 27.500 | 280 | 172 | 9 | 115 | 391 | 103 | 354 | 2.30e-23 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053811.t1 | AT1G77420 | 63.977 | 347 | 125 | 0 | 49 | 395 | 36 | 382 | 4.01e-171 | 483 |
| MS.gene053811.t1 | AT5G16120 | 60.790 | 329 | 128 | 1 | 61 | 389 | 10 | 337 | 1.75e-149 | 427 |
| MS.gene053811.t1 | AT5G16120 | 60.790 | 329 | 128 | 1 | 61 | 389 | 10 | 337 | 1.75e-149 | 427 |
| MS.gene053811.t1 | AT5G16120 | 60.790 | 329 | 128 | 1 | 61 | 389 | 28 | 355 | 3.50e-149 | 427 |
| MS.gene053811.t1 | AT5G16120 | 60.790 | 329 | 128 | 1 | 61 | 389 | 42 | 369 | 4.62e-149 | 427 |
| MS.gene053811.t1 | AT2G39420 | 46.552 | 290 | 154 | 1 | 104 | 393 | 8 | 296 | 4.88e-91 | 277 |
| MS.gene053811.t1 | AT2G39410 | 46.528 | 288 | 153 | 1 | 104 | 391 | 8 | 294 | 1.72e-90 | 276 |
| MS.gene053811.t1 | AT3G62860 | 44.912 | 285 | 155 | 1 | 107 | 391 | 9 | 291 | 2.20e-88 | 271 |
| MS.gene053811.t1 | AT2G47630 | 45.263 | 285 | 156 | 0 | 107 | 391 | 9 | 293 | 1.50e-86 | 266 |
| MS.gene053811.t1 | AT2G39400 | 45.172 | 290 | 158 | 1 | 104 | 393 | 2 | 290 | 6.93e-86 | 263 |
| MS.gene053811.t1 | AT3G55180 | 44.674 | 291 | 161 | 0 | 104 | 394 | 2 | 292 | 2.18e-85 | 262 |
| MS.gene053811.t1 | AT1G11090 | 43.643 | 291 | 164 | 0 | 103 | 393 | 26 | 316 | 1.65e-82 | 255 |
| MS.gene053811.t1 | AT3G62860 | 44.715 | 246 | 136 | 0 | 146 | 391 | 3 | 248 | 1.29e-75 | 237 |
| MS.gene053811.t1 | AT3G55190 | 40.690 | 290 | 169 | 3 | 106 | 394 | 11 | 298 | 7.81e-75 | 236 |
| MS.gene053811.t1 | AT2G47630 | 43.952 | 248 | 139 | 0 | 146 | 393 | 3 | 250 | 2.61e-70 | 223 |
| MS.gene053811.t1 | AT2G47630 | 45.378 | 238 | 130 | 0 | 156 | 393 | 33 | 270 | 6.62e-70 | 223 |
| MS.gene053811.t1 | AT2G39400 | 43.891 | 221 | 123 | 1 | 104 | 324 | 2 | 221 | 1.80e-59 | 193 |
| MS.gene053811.t1 | AT1G52760 | 35.517 | 290 | 184 | 3 | 103 | 391 | 36 | 323 | 5.55e-59 | 195 |
| MS.gene053811.t1 | AT5G14980 | 33.101 | 287 | 189 | 3 | 110 | 395 | 35 | 319 | 6.03e-56 | 187 |
| MS.gene053811.t1 | AT5G19290 | 33.451 | 284 | 187 | 2 | 113 | 395 | 38 | 320 | 3.67e-54 | 182 |
| MS.gene053811.t1 | AT5G11650 | 32.740 | 281 | 173 | 11 | 115 | 391 | 110 | 378 | 7.69e-34 | 130 |
| MS.gene053811.t1 | AT1G73480 | 30.961 | 281 | 180 | 8 | 115 | 392 | 194 | 463 | 7.66e-33 | 128 |
| MS.gene053811.t1 | AT1G18360 | 30.496 | 282 | 181 | 8 | 115 | 392 | 112 | 382 | 1.88e-30 | 120 |
| MS.gene053811.t1 | AT2G39410 | 46.535 | 101 | 53 | 1 | 104 | 204 | 8 | 107 | 5.84e-27 | 104 |
| MS.gene053811.t1 | AT5G11650 | 33.835 | 133 | 82 | 5 | 115 | 245 | 110 | 238 | 4.20e-14 | 72.8 |
Find 69 sgRNAs with CRISPR-Local
Find 223 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTGATCATTGCTTGTTTA+AGG | 0.083877 | 5.1:+44408024 | MS.gene053811:CDS |
| CTTCAAAGGGTTGTTGTATA+TGG | 0.181103 | 5.1:-44407816 | None:intergenic |
| TTGTCTCATGGCTTGATTCT+AGG | 0.244614 | 5.1:+44411408 | MS.gene053811:CDS |
| AAATGGTTACCACTGCATTT+TGG | 0.257020 | 5.1:+44411343 | MS.gene053811:CDS |
| GCTATGGACTATCCAGGTTT+TGG | 0.259890 | 5.1:+44408987 | MS.gene053811:CDS |
| GCACCATTATTGATTCTTCA+TGG | 0.293013 | 5.1:+44411233 | MS.gene053811:CDS |
| TACAGAAATTTGCTCACTAA+TGG | 0.293286 | 5.1:-44411278 | None:intergenic |
| ACTTTAAAGCTCTATGAAAA+TGG | 0.295246 | 5.1:+44411326 | MS.gene053811:CDS |
| ATTTGAAGGAGCCAGATAAT+TGG | 0.320173 | 5.1:+44409394 | MS.gene053811:CDS |
| GAGCATTATACACAAATAAA+AGG | 0.327592 | 5.1:+44409071 | MS.gene053811:CDS |
| TTTGGGAAGAGCTTTGCTTT+TGG | 0.337150 | 5.1:-44410345 | None:intergenic |
| AAACAAAGACCTTGCTGAAC+TGG | 0.340152 | 5.1:+44410365 | MS.gene053811:CDS |
| AGTTCTGTTGGGGCAGTCAA+TGG | 0.349175 | 5.1:+44409347 | MS.gene053811:CDS |
| AGAACCGAGTAAAAGAAAAT+TGG | 0.356076 | 5.1:+44410395 | MS.gene053811:CDS |
| AGTTCAGCAAGGTCTTTGTT+TGG | 0.377018 | 5.1:-44410363 | None:intergenic |
| ACATGCACATTCTTCTTTGA+AGG | 0.377141 | 5.1:+44408679 | MS.gene053811:CDS |
| ATCACAGCATCCCAATTATC+TGG | 0.383934 | 5.1:-44409405 | None:intergenic |
| TTCAAAGGGTTGTTGTATAT+GGG | 0.389599 | 5.1:-44407815 | None:intergenic |
| GTTCAGCAAGGTCTTTGTTT+GGG | 0.393636 | 5.1:-44410362 | None:intergenic |
| TCGACAAGATCATCGAAGTT+TGG | 0.400778 | 5.1:-44409038 | None:intergenic |
| TTCGCTTAAAGTTTATTTGA+AGG | 0.401747 | 5.1:+44409380 | MS.gene053811:CDS |
| TTTGAAGGAGCCAGATAATT+GGG | 0.402919 | 5.1:+44409395 | MS.gene053811:CDS |
| CGAGGTAATTCTCTCATATC+AGG | 0.408211 | 5.1:-44409324 | None:intergenic |
| TCTTCACTCACACCTTCAAT+TGG | 0.413503 | 5.1:-44407917 | None:intergenic |
| GCGAGGAGAATTGCTGCATC+TGG | 0.415251 | 5.1:+44408951 | MS.gene053811:CDS |
| AGGATGTTAAGTTCTTTGAT+TGG | 0.415918 | 5.1:-44407778 | None:intergenic |
| GAATTACCTCGAGTTCTGTT+GGG | 0.421706 | 5.1:+44409336 | MS.gene053811:CDS |
| CTGTTGGGGCAGTCAATGGG+TGG | 0.425862 | 5.1:+44409351 | MS.gene053811:CDS |
| AACGCCTTCATTACTGCATC+AGG | 0.429805 | 5.1:-44410300 | None:intergenic |
| TGAAAGGAATTCGAGGGGAT+TGG | 0.432685 | 5.1:+44408576 | MS.gene053811:CDS |
| AAATACACAGATGCCTTGAT+TGG | 0.442711 | 5.1:-44408637 | None:intergenic |
| GTTGGGGCAGTCAATGGGTG+GGG | 0.448340 | 5.1:+44409353 | MS.gene053811:CDS |
| GCTCCATGAAGAATCAATAA+TGG | 0.456411 | 5.1:-44411236 | None:intergenic |
| AGGGTAATTGATTCTTCAAA+GGG | 0.459828 | 5.1:-44407829 | None:intergenic |
| TCGTAACAAATAACATTGTA+AGG | 0.471754 | 5.1:-44410844 | None:intergenic |
| AAGGGTAATTGATTCTTCAA+AGG | 0.472924 | 5.1:-44407830 | None:intergenic |
| AAGAGCTGGATGCCAGAGTC+AGG | 0.476747 | 5.1:+44408610 | MS.gene053811:CDS |
| GTTCTGTTGGGGCAGTCAAT+GGG | 0.477766 | 5.1:+44409348 | MS.gene053811:CDS |
| TGTTGGGGCAGTCAATGGGT+GGG | 0.481490 | 5.1:+44409352 | MS.gene053811:CDS |
| GATAATCCACGACTTAAAAC+AGG | 0.483138 | 5.1:+44410868 | MS.gene053811:CDS |
| TTCTAGAATATGCAAAATCA+AGG | 0.484935 | 5.1:-44407964 | None:intergenic |
| ACAGCTTGAATTCTATCATC+AGG | 0.488263 | 5.1:-44411374 | None:intergenic |
| AGAATTACCTCGAGTTCTGT+TGG | 0.488737 | 5.1:+44409335 | MS.gene053811:CDS |
| TTGATTGGAGTTCCTGACTC+TGG | 0.493591 | 5.1:-44408622 | None:intergenic |
| TTGTTGTATATGGGAGAGAA+AGG | 0.494964 | 5.1:-44407806 | None:intergenic |
| AAGAGAAAAGCACCAATTGA+AGG | 0.506066 | 5.1:+44407905 | MS.gene053811:CDS |
| TTCATGATGACATTGTCTCA+TGG | 0.511182 | 5.1:+44411396 | MS.gene053811:CDS |
| TATGGGAGAGAAAGGTATGA+AGG | 0.513732 | 5.1:-44407798 | None:intergenic |
| TTGTTAAGTAGTGGTATGAA+AGG | 0.518878 | 5.1:+44408560 | MS.gene053811:intron |
| TCTTCTGCTCTGATTCCAGC+AGG | 0.519878 | 5.1:-44408405 | None:intergenic |
| CCTTCTGAAAGTCCAAAACC+TGG | 0.522547 | 5.1:-44408999 | None:intergenic |
| CGAGGAGAATTGCTGCATCT+GGG | 0.538646 | 5.1:+44408952 | MS.gene053811:CDS |
| AATTGAGTCAAAAGTAGAGA+AGG | 0.554168 | 5.1:+44410918 | MS.gene053811:CDS |
| GGACTTTCAGAAGGATTGCA+TGG | 0.558308 | 5.1:+44409008 | MS.gene053811:CDS |
| ACCACCTGATGCAGTAATGA+AGG | 0.558767 | 5.1:+44410296 | MS.gene053811:CDS |
| AATGAGCTTACTTTACACAT+TGG | 0.565047 | 5.1:-44409438 | None:intergenic |
| AGAGTCAGGAACTCCAATCA+AGG | 0.570762 | 5.1:+44408624 | MS.gene053811:CDS |
| TCTTCATGGAGCAGCAGACA+AGG | 0.573213 | 5.1:+44411247 | MS.gene053811:CDS |
| TCCACGACTTAAAACAGGCA+TGG | 0.581144 | 5.1:+44410873 | MS.gene053811:CDS |
| GTGGTATGAAAGGAATTCGA+GGG | 0.591527 | 5.1:+44408570 | MS.gene053811:intron |
| AATTACCTCGAGTTCTGTTG+GGG | 0.593417 | 5.1:+44409337 | MS.gene053811:CDS |
| CTCTGAAAGCCAGTTCAGCA+AGG | 0.602732 | 5.1:-44410374 | None:intergenic |
| GTATGAAAATGCATCTAGCA+AGG | 0.604169 | 5.1:+44411298 | MS.gene053811:CDS |
| AGTGGTATGAAAGGAATTCG+AGG | 0.622926 | 5.1:+44408569 | MS.gene053811:intron |
| TGGTATGAAAGGAATTCGAG+GGG | 0.632293 | 5.1:+44408571 | MS.gene053811:CDS |
| GACTGCCCCAACAGAACTCG+AGG | 0.642073 | 5.1:-44409342 | None:intergenic |
| TTACAATGTTATTTGTTACG+AGG | 0.659216 | 5.1:+44410846 | MS.gene053811:CDS |
| GCCTTCATTACTGCATCAGG+TGG | 0.660106 | 5.1:-44410297 | None:intergenic |
| GTTCCCCTTCCAAAATGCAG+TGG | 0.684497 | 5.1:-44411352 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAATCTATATTGTAATAA+TGG | + | chr5.1:44410499-44410518 | MS.gene053811:intron | 10.0% |
| !! | TTCAATATAATTATATGTAT+CGG | - | chr5.1:44408228-44408247 | None:intergenic | 10.0% |
| !! | AAAGCTAAATAAAATAGAAA+TGG | - | chr5.1:44408333-44408352 | None:intergenic | 15.0% |
| !! | AAGCTAAATAAAATAGAAAT+GGG | - | chr5.1:44408332-44408351 | None:intergenic | 15.0% |
| !! | ATTAAACATAATGGTATTAT+TGG | + | chr5.1:44409575-44409594 | MS.gene053811:intron | 15.0% |
| !! | TAAAAAATAAAAAAACTCCA+AGG | - | chr5.1:44408112-44408131 | None:intergenic | 15.0% |
| !! | TAAAAAATCAAAAAGTGAAT+AGG | - | chr5.1:44408921-44408940 | None:intergenic | 15.0% |
| !!! | AAAAAACAATGAATTTTGTA+TGG | + | chr5.1:44411186-44411205 | MS.gene053811:intron | 15.0% |
| !!! | ATTTGTTGAACATAATAAAA+CGG | - | chr5.1:44408450-44408469 | None:intergenic | 15.0% |
| !!! | TAACTTTTATTTTGTTTGAT+TGG | + | chr5.1:44408501-44408520 | MS.gene053811:intron | 15.0% |
| !!! | TCTATTTTCTCAAATATTAT+TGG | - | chr5.1:44409179-44409198 | None:intergenic | 15.0% |
| !!! | TGAAAATGTTTCTTTTATAA+TGG | + | chr5.1:44408769-44408788 | MS.gene053811:intron | 15.0% |
| !! | ACATCAAAAGAAAGTAAAAA+AGG | - | chr5.1:44410971-44410990 | None:intergenic | 20.0% |
| !! | AGAGTCTATATTAAACATAA+TGG | + | chr5.1:44409566-44409585 | MS.gene053811:intron | 20.0% |
| !! | ATCCTAATGTTATTCTTTAT+AGG | + | chr5.1:44410819-44410838 | MS.gene053811:intron | 20.0% |
| !! | TAAAATAATCTGATACATCT+CGG | - | chr5.1:44410151-44410170 | None:intergenic | 20.0% |
| !! | TTATAAATGCATATTATGAC+CGG | - | chr5.1:44410071-44410090 | None:intergenic | 20.0% |
| !!! | ATTATTGAGTTTTGTTGTAA+AGG | - | chr5.1:44407852-44407871 | None:intergenic | 20.0% |
| !!! | CACTTTTTGATTTTTTATTC+AGG | + | chr5.1:44408924-44408943 | MS.gene053811:intron | 20.0% |
| !!! | TGATTTTATTTGTTAAGTAG+TGG | + | chr5.1:44408551-44408570 | MS.gene053811:intron | 20.0% |
| !!! | TGATTTTCTCAATTTATTAG+TGG | + | chr5.1:44411085-44411104 | MS.gene053811:intron | 20.0% |
| !!! | TTATTGAGTTTTGTTGTAAA+GGG | - | chr5.1:44407851-44407870 | None:intergenic | 20.0% |
| !!! | TTTTATACGTAAATGTTAGT+TGG | + | chr5.1:44408127-44408146 | MS.gene053811:intron | 20.0% |
| !!! | TTTTGAAGTTTCTTAAAAGT+CGG | + | chr5.1:44408856-44408875 | MS.gene053811:intron | 20.0% |
| ! | AAATAAAAAAACTCCAAGGA+TGG | - | chr5.1:44408108-44408127 | None:intergenic | 25.0% |
| ! | AGCCTATAAAGAATAACATT+AGG | - | chr5.1:44410824-44410843 | None:intergenic | 25.0% |
| ! | ATTAATCTATACCTCTGTTA+AGG | + | chr5.1:44409667-44409686 | MS.gene053811:intron | 25.0% |
| ! | GAGCATTATACACAAATAAA+AGG | + | chr5.1:44409071-44409090 | MS.gene053811:CDS | 25.0% |
| ! | TAATCTGTTTGCTTATTAAC+TGG | + | chr5.1:44409640-44409659 | MS.gene053811:intron | 25.0% |
| ! | TCGTAACAAATAACATTGTA+AGG | - | chr5.1:44410847-44410866 | None:intergenic | 25.0% |
| ! | TCTTTGGATGTTTGTTTATA+GGG | + | chr5.1:44408792-44408811 | MS.gene053811:intron | 25.0% |
| ! | TGATTCATTGTGTGAAAATT+GGG | + | chr5.1:44408822-44408841 | MS.gene053811:intron | 25.0% |
| ! | TTAGTTCCTTGTAATATGTA+AGG | + | chr5.1:44409887-44409906 | MS.gene053811:intron | 25.0% |
| ! | TTCGCTTAAAGTTTATTTGA+AGG | + | chr5.1:44409380-44409399 | MS.gene053811:CDS | 25.0% |
| ! | TTGTAGTTAAACTACAGATA+TGG | - | chr5.1:44410610-44410629 | None:intergenic | 25.0% |
| !! | ATAATTATATGTATCGGTGT+CGG | - | chr5.1:44408222-44408241 | None:intergenic | 25.0% |
| !! | ATGAATTTTGTATGGTTGAT+TGG | + | chr5.1:44411194-44411213 | MS.gene053811:intron | 25.0% |
| !! | CTAACCAATTTTCTTTTACT+CGG | - | chr5.1:44410402-44410421 | None:intergenic | 25.0% |
| !! | GTTTCTTTTATAATGGTCTT+TGG | + | chr5.1:44408776-44408795 | MS.gene053811:intron | 25.0% |
| !! | TGAATTTTGTATGGTTGATT+GGG | + | chr5.1:44411195-44411214 | MS.gene053811:intron | 25.0% |
| !! | TTACAATGTTATTTGTTACG+AGG | + | chr5.1:44410846-44410865 | MS.gene053811:CDS | 25.0% |
| !! | TTTGAAGTTTCTTAAAAGTC+GGG | + | chr5.1:44408857-44408876 | MS.gene053811:intron | 25.0% |
| !!! | ACTTTAAAGCTCTATGAAAA+TGG | + | chr5.1:44411326-44411345 | MS.gene053811:CDS | 25.0% |
| !!! | ATTTTGCATATTCTAGAAGA+AGG | + | chr5.1:44407969-44407988 | MS.gene053811:CDS | 25.0% |
| !!! | TTCTAGAATATGCAAAATCA+AGG | - | chr5.1:44407967-44407986 | None:intergenic | 25.0% |
| !!! | TTTTGCATATTCTAGAAGAA+GGG | + | chr5.1:44407970-44407989 | MS.gene053811:CDS | 25.0% |
| AAAACCCAAACTTCATGTAA+AGG | - | chr5.1:44409929-44409948 | None:intergenic | 30.0% | |
| AAACCCAAACTTCATGTAAA+GGG | - | chr5.1:44409928-44409947 | None:intergenic | 30.0% | |
| AAGAGGTCAAATATGTTTGT+TGG | + | chr5.1:44409857-44409876 | MS.gene053811:intron | 30.0% | |
| AATGAGCTTACTTTACACAT+TGG | - | chr5.1:44409441-44409460 | None:intergenic | 30.0% | |
| AATTGAGTCAAAAGTAGAGA+AGG | + | chr5.1:44410918-44410937 | MS.gene053811:CDS | 30.0% | |
| ACTGATACGTCACAATTTAA+AGG | - | chr5.1:44410204-44410223 | None:intergenic | 30.0% | |
| AGAACCGAGTAAAAGAAAAT+TGG | + | chr5.1:44410395-44410414 | MS.gene053811:CDS | 30.0% | |
| AGGATGTTAAGTTCTTTGAT+TGG | - | chr5.1:44407781-44407800 | None:intergenic | 30.0% | |
| AGTTCAACTTTCCTATAGAT+TGG | - | chr5.1:44409722-44409741 | None:intergenic | 30.0% | |
| ATAATGAAGTTGTTGAGCAT+TGG | - | chr5.1:44409481-44409500 | None:intergenic | 30.0% | |
| ATATTTAGTGCAACACGTAA+AGG | - | chr5.1:44410649-44410668 | None:intergenic | 30.0% | |
| ATTGTTTATGTTTCCATCCT+TGG | + | chr5.1:44408092-44408111 | MS.gene053811:intron | 30.0% | |
| CTCAAAAGTCATACTGTTAT+AGG | + | chr5.1:44409615-44409634 | MS.gene053811:intron | 30.0% | |
| CTGATACGTCACAATTTAAA+GGG | - | chr5.1:44410203-44410222 | None:intergenic | 30.0% | |
| GAAATCATATGCAAGAGAAA+TGG | - | chr5.1:44410449-44410468 | None:intergenic | 30.0% | |
| GTCAACGCTGATAATAATTT+AGG | - | chr5.1:44408263-44408282 | None:intergenic | 30.0% | |
| GTCATAATTTGAATGCTAAG+TGG | + | chr5.1:44409695-44409714 | MS.gene053811:intron | 30.0% | |
| GTCATGCTTTCTATGAAATA+AGG | - | chr5.1:44409828-44409847 | None:intergenic | 30.0% | |
| GTCTTTGGATGTTTGTTTAT+AGG | + | chr5.1:44408791-44408810 | MS.gene053811:intron | 30.0% | |
| GTGATTCATTGTGTGAAAAT+TGG | + | chr5.1:44408821-44408840 | MS.gene053811:intron | 30.0% | |
| GTTCAACTTTCCTATAGATT+GGG | - | chr5.1:44409721-44409740 | None:intergenic | 30.0% | |
| TTCAAAGGGTTGTTGTATAT+GGG | - | chr5.1:44407818-44407837 | None:intergenic | 30.0% | |
| TTGAAGTTTCTTAAAAGTCG+GGG | + | chr5.1:44408858-44408877 | MS.gene053811:intron | 30.0% | |
| TTGTTAAGTAGTGGTATGAA+AGG | + | chr5.1:44408560-44408579 | MS.gene053811:intron | 30.0% | |
| ! | AAGGGTAATTGATTCTTCAA+AGG | - | chr5.1:44407833-44407852 | None:intergenic | 30.0% |
| ! | AGGGTAATTGATTCTTCAAA+GGG | - | chr5.1:44407832-44407851 | None:intergenic | 30.0% |
| ! | TACAGAAATTTGCTCACTAA+TGG | - | chr5.1:44411281-44411300 | None:intergenic | 30.0% |
| !! | GTGTATTTTTGTCATGGATA+TGG | + | chr5.1:44408652-44408671 | MS.gene053811:CDS | 30.0% |
| !! | TTCTTTGATCTGTTTTTCCT+AGG | + | chr5.1:44408377-44408396 | MS.gene053811:intron | 30.0% |
| !!! | ACTGTTAGTTTTGTTGTCTT+TGG | - | chr5.1:44407878-44407897 | None:intergenic | 30.0% |
| AAATACACAGATGCCTTGAT+TGG | - | chr5.1:44408640-44408659 | None:intergenic | 35.0% | |
| AACCAAAATGTTGCAATGCA+AGG | - | chr5.1:44410755-44410774 | None:intergenic | 35.0% | |
| ACAACATTGTTTAAGCTGCA+TGG | - | chr5.1:44410728-44410747 | None:intergenic | 35.0% | |
| ACAGCTTGAATTCTATCATC+AGG | - | chr5.1:44411377-44411396 | None:intergenic | 35.0% | |
| ACATGCACATTCTTCTTTGA+AGG | + | chr5.1:44408679-44408698 | MS.gene053811:CDS | 35.0% | |
| AGAATGCTTTAGTGATGATC+TGG | + | chr5.1:44409968-44409987 | MS.gene053811:intron | 35.0% | |
| ATTTGAAGGAGCCAGATAAT+TGG | + | chr5.1:44409394-44409413 | MS.gene053811:CDS | 35.0% | |
| CAAACTTCATGTAAAGGGAT+CGG | - | chr5.1:44409923-44409942 | None:intergenic | 35.0% | |
| CCTATGTTATCAGACAACAT+AGG | + | chr5.1:44408710-44408729 | MS.gene053811:intron | 35.0% | |
| CCTATGTTGTCTGATAACAT+AGG | - | chr5.1:44408713-44408732 | None:intergenic | 35.0% | |
| CGAAGACCTTACATATTACA+AGG | - | chr5.1:44409896-44409915 | None:intergenic | 35.0% | |
| CGACGAAAGTTACAATTTCA+GGG | + | chr5.1:44408888-44408907 | MS.gene053811:intron | 35.0% | |
| CTTCAAAGGGTTGTTGTATA+TGG | - | chr5.1:44407819-44407838 | None:intergenic | 35.0% | |
| GACGAAAGTTACAATTTCAG+GGG | + | chr5.1:44408889-44408908 | MS.gene053811:intron | 35.0% | |
| GATAATCCACGACTTAAAAC+AGG | + | chr5.1:44410868-44410887 | MS.gene053811:CDS | 35.0% | |
| GATCCCTTTACATGAAGTTT+GGG | + | chr5.1:44409922-44409941 | MS.gene053811:intron | 35.0% | |
| GCTCCATGAAGAATCAATAA+TGG | - | chr5.1:44411239-44411258 | None:intergenic | 35.0% | |
| GCTTGATCATTGCTTGTTTA+AGG | + | chr5.1:44408024-44408043 | MS.gene053811:CDS | 35.0% | |
| GTATGAAAATGCATCTAGCA+AGG | + | chr5.1:44411298-44411317 | MS.gene053811:CDS | 35.0% | |
| TATGACAAAGTCCTTAACAG+AGG | - | chr5.1:44409681-44409700 | None:intergenic | 35.0% | |
| TCAACAGACACACCTATAAT+CGG | + | chr5.1:44409227-44409246 | MS.gene053811:intron | 35.0% | |
| TCGACGAAAGTTACAATTTC+AGG | + | chr5.1:44408887-44408906 | MS.gene053811:intron | 35.0% | |
| TGAAGATGCAGATCATGTTA+AGG | + | chr5.1:44410106-44410125 | MS.gene053811:intron | 35.0% | |
| TGAAGTTTCTTAAAAGTCGG+GGG | + | chr5.1:44408859-44408878 | MS.gene053811:intron | 35.0% | |
| TGACGTATCAGTTTAACAGT+TGG | + | chr5.1:44410212-44410231 | MS.gene053811:intron | 35.0% | |
| TTCATGATGACATTGTCTCA+TGG | + | chr5.1:44411396-44411415 | MS.gene053811:CDS | 35.0% | |
| TTGTTGTATATGGGAGAGAA+AGG | - | chr5.1:44407809-44407828 | None:intergenic | 35.0% | |
| TTTGAAGGAGCCAGATAATT+GGG | + | chr5.1:44409395-44409414 | MS.gene053811:CDS | 35.0% | |
| ! | AAACAGGCATGGAACTTTTA+AGG | + | chr5.1:44410884-44410903 | MS.gene053811:CDS | 35.0% |
| ! | AAATGGTTACCACTGCATTT+TGG | + | chr5.1:44411343-44411362 | MS.gene053811:CDS | 35.0% |
| ! | AACAGGCATGGAACTTTTAA+GGG | + | chr5.1:44410885-44410904 | MS.gene053811:CDS | 35.0% |
| ! | CATTGGTAACAATACAAACG+AGG | - | chr5.1:44409464-44409483 | None:intergenic | 35.0% |
| ! | GAGATGTTAACATTTTGGAC+CGG | + | chr5.1:44410033-44410052 | MS.gene053811:intron | 35.0% |
| ! | TCGTCGAGATGTTAACATTT+TGG | + | chr5.1:44410028-44410047 | MS.gene053811:intron | 35.0% |
| ! | TGGCGACAATGTTGATATTT+TGG | - | chr5.1:44410590-44410609 | None:intergenic | 35.0% |
| ! | TTGAATTTGCTCTCCAGATA+TGG | + | chr5.1:44410552-44410571 | MS.gene053811:intron | 35.0% |
| ! | TTTTCATCTTGACCAATGTC+AGG | + | chr5.1:44408063-44408082 | MS.gene053811:intron | 35.0% |
| !! | AAGAGAAAAGCACCAATTGA+AGG | + | chr5.1:44407905-44407924 | MS.gene053811:CDS | 35.0% |
| !! | GCACCATTATTGATTCTTCA+TGG | + | chr5.1:44411233-44411252 | MS.gene053811:CDS | 35.0% |
| !! | GCATCTGTGTATTTTTGTCA+TGG | + | chr5.1:44408646-44408665 | MS.gene053811:CDS | 35.0% |
| !!! | TGGAAATTTTTTGCAAGAGC+TGG | + | chr5.1:44408596-44408615 | MS.gene053811:CDS | 35.0% |
| !!! | TTTTTTATTCAGGTGTTGCG+AGG | + | chr5.1:44408934-44408953 | MS.gene053811:intron | 35.0% |
| AAACAAAGACCTTGCTGAAC+TGG | + | chr5.1:44410365-44410384 | MS.gene053811:CDS | 40.0% | |
| AAGTTTCTTAAAAGTCGGGG+GGG | + | chr5.1:44408861-44408880 | MS.gene053811:intron | 40.0% | |
| AATTACCTCGAGTTCTGTTG+GGG | + | chr5.1:44409337-44409356 | MS.gene053811:CDS | 40.0% | |
| ACATCATCTGCAATCTTACC+AGG | - | chr5.1:44410273-44410292 | None:intergenic | 40.0% | |
| AGAATTACCTCGAGTTCTGT+TGG | + | chr5.1:44409335-44409354 | MS.gene053811:CDS | 40.0% | |
| AGCATGACAGAGAAAGAAAG+AGG | + | chr5.1:44409840-44409859 | MS.gene053811:intron | 40.0% | |
| AGTGGTATGAAAGGAATTCG+AGG | + | chr5.1:44408569-44408588 | MS.gene053811:intron | 40.0% | |
| AGTTCAGCAAGGTCTTTGTT+TGG | - | chr5.1:44410366-44410385 | None:intergenic | 40.0% | |
| ATCACAGCATCCCAATTATC+TGG | - | chr5.1:44409408-44409427 | None:intergenic | 40.0% | |
| ATCATGTGAGATGTGATACG+TGG | + | chr5.1:44409749-44409768 | MS.gene053811:intron | 40.0% | |
| ATGCTGAAACCTATGAAGCA+CGG | - | chr5.1:44411146-44411165 | None:intergenic | 40.0% | |
| ATGGTTGATTGGGTTATGTC+AGG | + | chr5.1:44411205-44411224 | MS.gene053811:intron | 40.0% | |
| ATTCTTCCCATTTCCTCTTC+TGG | - | chr5.1:44409953-44409972 | None:intergenic | 40.0% | |
| CATTGTGTGAAAATTGGGTG+TGG | + | chr5.1:44408827-44408846 | MS.gene053811:intron | 40.0% | |
| CGAGGTAATTCTCTCATATC+AGG | - | chr5.1:44409327-44409346 | None:intergenic | 40.0% | |
| CGATCCCTTTACATGAAGTT+TGG | + | chr5.1:44409921-44409940 | MS.gene053811:intron | 40.0% | |
| CGTATCAGTTTAACAGTTGG+AGG | + | chr5.1:44410215-44410234 | MS.gene053811:intron | 40.0% | |
| CTGGATAGGTTTCAAAGACA+TGG | + | chr5.1:44409261-44409280 | MS.gene053811:intron | 40.0% | |
| GAAGTTTCTTAAAAGTCGGG+GGG | + | chr5.1:44408860-44408879 | MS.gene053811:intron | 40.0% | |
| GAATTACCTCGAGTTCTGTT+GGG | + | chr5.1:44409336-44409355 | MS.gene053811:CDS | 40.0% | |
| GGAGTATGTGTTTCATAGGT+TGG | + | chr5.1:44408291-44408310 | MS.gene053811:intron | 40.0% | |
| GTGGTATGAAAGGAATTCGA+GGG | + | chr5.1:44408570-44408589 | MS.gene053811:intron | 40.0% | |
| TATGAAGCACAGACATTCCT+CGG | + | chr5.1:44411007-44411026 | MS.gene053811:intron | 40.0% | |
| TCATGTGAGATGTGATACGT+GGG | + | chr5.1:44409750-44409769 | MS.gene053811:intron | 40.0% | |
| TCCTTGAACCTTGTAACCTA+GGG | + | chr5.1:44409777-44409796 | MS.gene053811:intron | 40.0% | |
| TCGACAAGATCATCGAAGTT+TGG | - | chr5.1:44409041-44409060 | None:intergenic | 40.0% | |
| TCTTCACTCACACCTTCAAT+TGG | - | chr5.1:44407920-44407939 | None:intergenic | 40.0% | |
| TGACCGGTCAATATTGAATC+CGG | - | chr5.1:44410055-44410074 | None:intergenic | 40.0% | |
| TGGTATGAAAGGAATTCGAG+GGG | + | chr5.1:44408571-44408590 | MS.gene053811:CDS | 40.0% | |
| TTCCTTGAACCTTGTAACCT+AGG | + | chr5.1:44409776-44409795 | MS.gene053811:intron | 40.0% | |
| TTCTTCCCATTTCCTCTTCT+GGG | - | chr5.1:44409952-44409971 | None:intergenic | 40.0% | |
| TTGTCTCATGGCTTGATTCT+AGG | + | chr5.1:44411408-44411427 | MS.gene053811:CDS | 40.0% | |
| ! | AACAATCTGAAGCCTGACAT+TGG | - | chr5.1:44408078-44408097 | None:intergenic | 40.0% |
| ! | CAGTTTCAAGTGTAGTGTCA+GGG | - | chr5.1:44409147-44409166 | None:intergenic | 40.0% |
| ! | CTGAGGAGTATGTGTTTCAT+AGG | + | chr5.1:44408287-44408306 | MS.gene053811:intron | 40.0% |
| ! | GTTCAGCAAGGTCTTTGTTT+GGG | - | chr5.1:44410365-44410384 | None:intergenic | 40.0% |
| ! | GTTTTCCCAGAAGAGGAAAT+GGG | + | chr5.1:44409944-44409963 | MS.gene053811:intron | 40.0% |
| ! | TATGGGAGAGAAAGGTATGA+AGG | - | chr5.1:44407801-44407820 | None:intergenic | 40.0% |
| ! | TCAGTTTCAAGTGTAGTGTC+AGG | - | chr5.1:44409148-44409167 | None:intergenic | 40.0% |
| ! | TGCCTTGCATTGCAACATTT+TGG | + | chr5.1:44410750-44410769 | MS.gene053811:intron | 40.0% |
| ! | TTTGGGAAGAGCTTTGCTTT+TGG | - | chr5.1:44410348-44410367 | None:intergenic | 40.0% |
| !! | GTTACCACTGCATTTTGGAA+GGG | + | chr5.1:44411348-44411367 | MS.gene053811:CDS | 40.0% |
| !! | GTTTTTGCTATGGACTATCC+AGG | + | chr5.1:44408981-44409000 | MS.gene053811:CDS | 40.0% |
| !! | TTACCACTGCATTTTGGAAG+GGG | + | chr5.1:44411349-44411368 | MS.gene053811:CDS | 40.0% |
| !!! | TGGGTATGCTGTTTTTGCTA+TGG | + | chr5.1:44408971-44408990 | MS.gene053811:CDS | 40.0% |
| AACGCCTTCATTACTGCATC+AGG | - | chr5.1:44410303-44410322 | None:intergenic | 45.0% | |
| ACAAGTTTCAGTAGCTCCCT+AGG | - | chr5.1:44409796-44409815 | None:intergenic | 45.0% | |
| ACAGACACACCTATAATCGG+AGG | + | chr5.1:44409230-44409249 | MS.gene053811:intron | 45.0% | |
| ACCACCTGATGCAGTAATGA+AGG | + | chr5.1:44410296-44410315 | MS.gene053811:CDS | 45.0% | |
| AGAGTCAGGAACTCCAATCA+AGG | + | chr5.1:44408624-44408643 | MS.gene053811:CDS | 45.0% | |
| CATGTGAGATGTGATACGTG+GGG | + | chr5.1:44409751-44409770 | MS.gene053811:intron | 45.0% | |
| GAAGTCTCCACAACCATATC+TGG | - | chr5.1:44410568-44410587 | None:intergenic | 45.0% | |
| GAGGAATGTCTGTGCTTCAT+AGG | - | chr5.1:44411008-44411027 | None:intergenic | 45.0% | |
| GGACCGGATTCAATATTGAC+CGG | + | chr5.1:44410049-44410068 | MS.gene053811:intron | 45.0% | |
| GGACTTTCAGAAGGATTGCA+TGG | + | chr5.1:44409008-44409027 | MS.gene053811:CDS | 45.0% | |
| GTTTAAGCTGCATGGCTAGT+AGG | - | chr5.1:44410720-44410739 | None:intergenic | 45.0% | |
| TCCACGACTTAAAACAGGCA+TGG | + | chr5.1:44410873-44410892 | MS.gene053811:CDS | 45.0% | |
| TCCCTAGGTTACAAGGTTCA+AGG | - | chr5.1:44409781-44409800 | None:intergenic | 45.0% | |
| TGAAAGGAATTCGAGGGGAT+TGG | + | chr5.1:44408576-44408595 | MS.gene053811:CDS | 45.0% | |
| TGCTAAGTGGCCCAATCTAT+AGG | + | chr5.1:44409708-44409727 | MS.gene053811:intron | 45.0% | |
| TGTCTGTATCCGTGCTTCAT+AGG | + | chr5.1:44411134-44411153 | MS.gene053811:intron | 45.0% | |
| TTGATTGGAGTTCCTGACTC+TGG | - | chr5.1:44408625-44408644 | None:intergenic | 45.0% | |
| TTGCTCTCCAGATATGGTTG+TGG | + | chr5.1:44410558-44410577 | MS.gene053811:intron | 45.0% | |
| ! | ACACCTATAATCGGAGGTGT+TGG | + | chr5.1:44409236-44409255 | MS.gene053811:intron | 45.0% |
| ! | CCTTCTGAAAGTCCAAAACC+TGG | - | chr5.1:44409002-44409021 | None:intergenic | 45.0% |
| ! | GGTTACCACTGCATTTTGGA+AGG | + | chr5.1:44411347-44411366 | MS.gene053811:CDS | 45.0% |
| ! | GGTTTTCCCAGAAGAGGAAA+TGG | + | chr5.1:44409943-44409962 | MS.gene053811:intron | 45.0% |
| ! | TGTCTGTTGACTGACACACA+TGG | - | chr5.1:44409217-44409236 | None:intergenic | 45.0% |
| ! | TTTGAAGCACGTATGCTCCT+AGG | + | chr5.1:44408154-44408173 | MS.gene053811:intron | 45.0% |
| !! | AGTTTGGGTTTTCCCAGAAG+AGG | + | chr5.1:44409937-44409956 | MS.gene053811:intron | 45.0% |
| !! | GACTTGCTGATTTGTGTTCC+TGG | + | chr5.1:44410252-44410271 | MS.gene053811:intron | 45.0% |
| !! | GCTATGGACTATCCAGGTTT+TGG | + | chr5.1:44408987-44409006 | MS.gene053811:CDS | 45.0% |
| !! | TCCATGCCTGTTTTAAGTCG+TGG | - | chr5.1:44410877-44410896 | None:intergenic | 45.0% |
| !!! | CCAGGTTTTGGACTTTCAGA+AGG | + | chr5.1:44408999-44409018 | MS.gene053811:CDS | 45.0% |
| ACGGATACAGACACGTACAC+CGG | - | chr5.1:44411127-44411146 | None:intergenic | 50.0% | |
| AGTTCTGTTGGGGCAGTCAA+TGG | + | chr5.1:44409347-44409366 | MS.gene053811:CDS | 50.0% | |
| CAGTAGCTCCCTAGGTTACA+AGG | - | chr5.1:44409788-44409807 | None:intergenic | 50.0% | |
| CGAGGAGAATTGCTGCATCT+GGG | + | chr5.1:44408952-44408971 | MS.gene053811:CDS | 50.0% | |
| CTAGGATTAGGCGTGTTCTG+AGG | + | chr5.1:44408172-44408191 | MS.gene053811:intron | 50.0% | |
| CTCAGAACACGCCTAATCCT+AGG | - | chr5.1:44408174-44408193 | None:intergenic | 50.0% | |
| GCACAGACATTCCTCGGATT+AGG | + | chr5.1:44411013-44411032 | MS.gene053811:intron | 50.0% | |
| GCACCAACACCTCCGATTAT+AGG | - | chr5.1:44409242-44409261 | None:intergenic | 50.0% | |
| GCACGTATGCTCCTAGGATT+AGG | + | chr5.1:44408160-44408179 | MS.gene053811:intron | 50.0% | |
| GCCTTCATTACTGCATCAGG+TGG | - | chr5.1:44410300-44410319 | None:intergenic | 50.0% | |
| GTTCCCCTTCCAAAATGCAG+TGG | - | chr5.1:44411355-44411374 | None:intergenic | 50.0% | |
| GTTCTGTTGGGGCAGTCAAT+GGG | + | chr5.1:44409348-44409367 | MS.gene053811:CDS | 50.0% | |
| TCTTCATGGAGCAGCAGACA+AGG | + | chr5.1:44411247-44411266 | MS.gene053811:CDS | 50.0% | |
| TCTTCTGCTCTGATTCCAGC+AGG | - | chr5.1:44408408-44408427 | None:intergenic | 50.0% | |
| ! | CTCTGAAAGCCAGTTCAGCA+AGG | - | chr5.1:44410377-44410396 | None:intergenic | 50.0% |
| ! | TTTTCCTAGGATGCTCCTGC+TGG | + | chr5.1:44408390-44408409 | MS.gene053811:intron | 50.0% |
| !! | ATAATCGGAGGTGTTGGTGC+TGG | + | chr5.1:44409242-44409261 | MS.gene053811:intron | 50.0% |
| !! | TATCAGCGTTGACGTGTCTG+AGG | + | chr5.1:44408270-44408289 | MS.gene053811:intron | 50.0% |
| AAGAGCTGGATGCCAGAGTC+AGG | + | chr5.1:44408610-44408629 | MS.gene053811:CDS | 55.0% | |
| GCGAGGAGAATTGCTGCATC+TGG | + | chr5.1:44408951-44408970 | MS.gene053811:CDS | 55.0% | |
| TGTCGAAACGTGTCCGACAG+CGG | - | chr5.1:44411045-44411064 | None:intergenic | 55.0% | |
| TGTTGGGGCAGTCAATGGGT+GGG | + | chr5.1:44409352-44409371 | MS.gene053811:CDS | 55.0% | |
| !! | GATTCCAGCAGGAGCATCCT+AGG | - | chr5.1:44408397-44408416 | None:intergenic | 55.0% |
| CTGTTGGGGCAGTCAATGGG+TGG | + | chr5.1:44409351-44409370 | MS.gene053811:CDS | 60.0% | |
| GACTGCCCCAACAGAACTCG+AGG | - | chr5.1:44409345-44409364 | None:intergenic | 60.0% | |
| GATTAGGCGTGTCCCGCTGT+CGG | + | chr5.1:44411029-44411048 | MS.gene053811:intron | 60.0% | |
| GTCGAAACGTGTCCGACAGC+GGG | - | chr5.1:44411044-44411063 | None:intergenic | 60.0% | |
| GTTGGGGCAGTCAATGGGTG+GGG | + | chr5.1:44409353-44409372 | MS.gene053811:CDS | 60.0% | |
| ! | TGGTGTCAGCGTGTCGTGTC+CGG | + | chr5.1:44411105-44411124 | MS.gene053811:intron | 60.0% |
| !! | CGGAGGTGTTGGTGCTGGAT+AGG | + | chr5.1:44409247-44409266 | MS.gene053811:intron | 60.0% |
| AGCGGGACACGCCTAATCCG+AGG | - | chr5.1:44411027-44411046 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 44407752 | 44411445 | 44407752 | ID=MS.gene053811 |
| chr5.1 | mRNA | 44407752 | 44411445 | 44407752 | ID=MS.gene053811.t1;Parent=MS.gene053811 |
| chr5.1 | exon | 44407752 | 44408045 | 44407752 | ID=MS.gene053811.t1.exon1;Parent=MS.gene053811.t1 |
| chr5.1 | CDS | 44407752 | 44408045 | 44407752 | ID=cds.MS.gene053811.t1;Parent=MS.gene053811.t1 |
| chr5.1 | exon | 44408399 | 44408428 | 44408399 | ID=MS.gene053811.t1.exon2;Parent=MS.gene053811.t1 |
| chr5.1 | CDS | 44408399 | 44408428 | 44408399 | ID=cds.MS.gene053811.t1;Parent=MS.gene053811.t1 |
| chr5.1 | exon | 44408571 | 44408700 | 44408571 | ID=MS.gene053811.t1.exon3;Parent=MS.gene053811.t1 |
| chr5.1 | CDS | 44408571 | 44408700 | 44408571 | ID=cds.MS.gene053811.t1;Parent=MS.gene053811.t1 |
| chr5.1 | exon | 44408946 | 44409092 | 44408946 | ID=MS.gene053811.t1.exon4;Parent=MS.gene053811.t1 |
| chr5.1 | CDS | 44408946 | 44409092 | 44408946 | ID=cds.MS.gene053811.t1;Parent=MS.gene053811.t1 |
| chr5.1 | exon | 44409319 | 44409449 | 44409319 | ID=MS.gene053811.t1.exon5;Parent=MS.gene053811.t1 |
| chr5.1 | CDS | 44409319 | 44409449 | 44409319 | ID=cds.MS.gene053811.t1;Parent=MS.gene053811.t1 |
| chr5.1 | exon | 44410279 | 44410416 | 44410279 | ID=MS.gene053811.t1.exon6;Parent=MS.gene053811.t1 |
| chr5.1 | CDS | 44410279 | 44410416 | 44410279 | ID=cds.MS.gene053811.t1;Parent=MS.gene053811.t1 |
| chr5.1 | exon | 44410841 | 44410939 | 44410841 | ID=MS.gene053811.t1.exon7;Parent=MS.gene053811.t1 |
| chr5.1 | CDS | 44410841 | 44410939 | 44410841 | ID=cds.MS.gene053811.t1;Parent=MS.gene053811.t1 |
| chr5.1 | exon | 44411227 | 44411445 | 44411227 | ID=MS.gene053811.t1.exon8;Parent=MS.gene053811.t1 |
| chr5.1 | CDS | 44411227 | 44411445 | 44411227 | ID=cds.MS.gene053811.t1;Parent=MS.gene053811.t1 |
| Gene Sequence |
| Protein sequence |
