Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene67248.t1 | AES98872.1 | 88.8 | 357 | 26 | 1 | 1 | 357 | 1 | 343 | 1.50E-176 | 629 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene67248.t1 | Q9FGH9 | 43.3 | 411 | 199 | 11 | 1 | 385 | 214 | 616 | 4.3e-71 | 270.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene67248.t1 | G7K5P7 | 88.8 | 357 | 26 | 1 | 1 | 357 | 1 | 343 | 1.1e-176 | 629.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene053340 | MS.gene67248 | 0.811148 | 8.09E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene67248.t1 | MTR_5g073900 | 88.796 | 357 | 26 | 1 | 1 | 357 | 1 | 343 | 0.0 | 637 |
MS.gene67248.t1 | MTR_5g074190 | 55.124 | 283 | 72 | 4 | 111 | 391 | 184 | 413 | 3.58e-92 | 286 |
MS.gene67248.t1 | MTR_5g073450 | 45.433 | 416 | 193 | 10 | 1 | 385 | 219 | 631 | 1.98e-89 | 283 |
MS.gene67248.t1 | MTR_5g074130 | 40.146 | 411 | 222 | 8 | 1 | 389 | 269 | 677 | 5.51e-84 | 271 |
MS.gene67248.t1 | MTR_5g073460 | 41.866 | 418 | 207 | 10 | 1 | 385 | 276 | 690 | 6.61e-84 | 270 |
MS.gene67248.t1 | MTR_5g073920 | 38.765 | 405 | 220 | 8 | 1 | 386 | 263 | 658 | 8.94e-80 | 259 |
MS.gene67248.t1 | MTR_3g031130 | 41.627 | 418 | 202 | 12 | 1 | 385 | 209 | 617 | 2.12e-74 | 243 |
MS.gene67248.t1 | MTR_3g464010 | 37.713 | 411 | 232 | 7 | 1 | 391 | 266 | 672 | 1.46e-72 | 240 |
MS.gene67248.t1 | MTR_5g073960 | 70.946 | 148 | 43 | 0 | 1 | 148 | 268 | 415 | 3.23e-66 | 217 |
MS.gene67248.t1 | MTR_5g093530 | 38.418 | 354 | 184 | 7 | 47 | 389 | 244 | 574 | 4.47e-65 | 218 |
MS.gene67248.t1 | MTR_5g073480 | 37.438 | 406 | 172 | 15 | 1 | 381 | 277 | 625 | 7.01e-52 | 183 |
MS.gene67248.t1 | MTR_5g073620 | 37.710 | 297 | 150 | 8 | 5 | 284 | 309 | 587 | 5.18e-42 | 158 |
MS.gene67248.t1 | MTR_5g073620 | 35.366 | 246 | 138 | 5 | 150 | 386 | 834 | 1067 | 7.73e-32 | 128 |
MS.gene67248.t1 | MTR_8g021330 | 27.714 | 433 | 257 | 14 | 1 | 385 | 179 | 603 | 8.74e-42 | 155 |
MS.gene67248.t1 | MTR_4g103540 | 28.538 | 424 | 253 | 14 | 1 | 385 | 266 | 678 | 1.98e-41 | 155 |
MS.gene67248.t1 | MTR_7g026630 | 29.138 | 429 | 252 | 13 | 1 | 385 | 228 | 648 | 1.72e-40 | 152 |
MS.gene67248.t1 | MTR_6g033310 | 27.907 | 430 | 251 | 13 | 5 | 385 | 304 | 723 | 7.08e-37 | 142 |
MS.gene67248.t1 | MTR_5g073780 | 37.131 | 237 | 129 | 5 | 164 | 391 | 2 | 227 | 2.05e-36 | 133 |
MS.gene67248.t1 | MTR_1g090620 | 26.340 | 429 | 260 | 12 | 1 | 385 | 223 | 639 | 1.25e-34 | 135 |
MS.gene67248.t1 | MTR_7g013770 | 27.230 | 426 | 254 | 13 | 6 | 385 | 249 | 664 | 1.83e-33 | 132 |
MS.gene67248.t1 | MTR_1g057560 | 25.598 | 418 | 267 | 12 | 1 | 385 | 217 | 623 | 3.34e-31 | 125 |
MS.gene67248.t1 | MTR_1g117090 | 25.482 | 467 | 252 | 14 | 1 | 386 | 216 | 667 | 4.26e-29 | 119 |
MS.gene67248.t1 | MTR_5g073770 | 41.026 | 156 | 77 | 3 | 6 | 147 | 223 | 377 | 3.33e-23 | 100 |
MS.gene67248.t1 | MTR_2g096230 | 23.953 | 430 | 265 | 12 | 1 | 389 | 175 | 583 | 7.38e-23 | 101 |
MS.gene67248.t1 | MTR_3g025900 | 25.000 | 424 | 264 | 15 | 1 | 388 | 199 | 604 | 1.16e-20 | 94.7 |
MS.gene67248.t1 | MTR_5g073490 | 36.970 | 165 | 78 | 4 | 232 | 385 | 3 | 152 | 4.70e-20 | 86.7 |
MS.gene67248.t1 | MTR_1g067480 | 24.306 | 432 | 265 | 15 | 1 | 385 | 184 | 600 | 1.28e-19 | 91.3 |
MS.gene67248.t1 | MTR_4g024790 | 53.659 | 82 | 21 | 1 | 154 | 235 | 1 | 65 | 1.27e-16 | 74.3 |
MS.gene67248.t1 | MTR_7g017300 | 52.874 | 87 | 39 | 2 | 50 | 135 | 57 | 142 | 2.95e-15 | 73.2 |
MS.gene67248.t1 | MTR_4g062330 | 29.688 | 192 | 121 | 6 | 1 | 180 | 188 | 377 | 1.23e-14 | 76.3 |
MS.gene67248.t1 | MTR_5g073820 | 36.905 | 168 | 68 | 6 | 88 | 246 | 294 | 432 | 1.29e-13 | 72.8 |
MS.gene67248.t1 | MTR_4g008260 | 22.460 | 374 | 243 | 13 | 42 | 385 | 283 | 639 | 1.25e-11 | 67.0 |
MS.gene67248.t1 | MTR_5g073650 | 33.125 | 160 | 69 | 3 | 1 | 156 | 190 | 315 | 1.81e-11 | 65.1 |
MS.gene67248.t1 | MTR_5g073810 | 33.962 | 159 | 67 | 3 | 1 | 155 | 292 | 416 | 2.17e-11 | 65.5 |
MS.gene67248.t1 | MTR_4g023660 | 66.667 | 45 | 15 | 0 | 1 | 45 | 51 | 95 | 2.57e-11 | 60.1 |
MS.gene67248.t1 | MTR_7g017290 | 54.000 | 50 | 23 | 0 | 295 | 344 | 40 | 89 | 5.93e-11 | 58.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene67248.t1 | AT5G58430 | 43.066 | 411 | 200 | 11 | 1 | 385 | 214 | 616 | 4.81e-87 | 276 |
MS.gene67248.t1 | AT1G07000 | 35.194 | 412 | 227 | 10 | 1 | 385 | 196 | 594 | 1.98e-62 | 211 |
MS.gene67248.t1 | AT3G14090 | 26.969 | 419 | 258 | 11 | 1 | 377 | 191 | 603 | 3.42e-42 | 157 |
MS.gene67248.t1 | AT5G50380 | 27.014 | 422 | 266 | 10 | 1 | 385 | 253 | 669 | 2.90e-41 | 155 |
MS.gene67248.t1 | AT1G54090 | 27.423 | 423 | 252 | 12 | 1 | 377 | 188 | 601 | 3.74e-41 | 154 |
MS.gene67248.t1 | AT1G72470 | 28.009 | 432 | 256 | 14 | 1 | 385 | 196 | 619 | 2.29e-39 | 149 |
MS.gene67248.t1 | AT5G13990 | 30.000 | 420 | 240 | 14 | 5 | 385 | 275 | 679 | 5.76e-38 | 145 |
MS.gene67248.t1 | AT5G13150 | 27.945 | 433 | 252 | 13 | 1 | 385 | 222 | 642 | 1.25e-35 | 139 |
MS.gene67248.t1 | AT5G03540 | 26.887 | 424 | 259 | 12 | 1 | 385 | 102 | 513 | 1.79e-35 | 137 |
MS.gene67248.t1 | AT5G03540 | 26.995 | 426 | 256 | 11 | 1 | 385 | 243 | 654 | 4.38e-35 | 137 |
MS.gene67248.t1 | AT5G03540 | 26.995 | 426 | 256 | 11 | 1 | 385 | 217 | 628 | 4.63e-35 | 137 |
MS.gene67248.t1 | AT5G52340 | 25.721 | 416 | 267 | 12 | 1 | 385 | 217 | 621 | 1.14e-29 | 121 |
MS.gene67248.t1 | AT1G07725 | 27.692 | 390 | 232 | 13 | 1 | 354 | 187 | 562 | 3.38e-26 | 111 |
MS.gene67248.t1 | AT3G29400 | 24.719 | 445 | 261 | 14 | 1 | 385 | 215 | 645 | 4.40e-26 | 110 |
MS.gene67248.t1 | AT2G39380 | 25.000 | 428 | 266 | 11 | 1 | 385 | 193 | 608 | 9.22e-24 | 103 |
MS.gene67248.t1 | AT5G52350 | 25.587 | 426 | 267 | 16 | 1 | 391 | 171 | 581 | 2.73e-23 | 102 |
MS.gene67248.t1 | AT5G59730 | 26.667 | 435 | 254 | 18 | 1 | 385 | 177 | 596 | 4.99e-23 | 101 |
MS.gene67248.t1 | AT5G59730 | 26.667 | 435 | 254 | 18 | 1 | 385 | 177 | 596 | 6.07e-23 | 101 |
MS.gene67248.t1 | AT3G09530 | 25.000 | 432 | 269 | 15 | 1 | 385 | 177 | 600 | 3.28e-22 | 99.4 |
MS.gene67248.t1 | AT3G09520 | 24.775 | 444 | 254 | 17 | 1 | 385 | 182 | 604 | 6.14e-21 | 95.5 |
MS.gene67248.t1 | AT3G55150 | 23.502 | 434 | 264 | 12 | 1 | 385 | 194 | 608 | 1.67e-20 | 94.4 |
MS.gene67248.t1 | AT2G28640 | 27.146 | 431 | 263 | 15 | 1 | 393 | 167 | 584 | 3.31e-20 | 93.2 |
MS.gene67248.t1 | AT5G61010 | 22.494 | 409 | 265 | 11 | 12 | 385 | 233 | 624 | 1.41e-17 | 85.1 |
MS.gene67248.t1 | AT5G61010 | 22.494 | 409 | 265 | 11 | 12 | 385 | 233 | 624 | 1.41e-17 | 85.1 |
MS.gene67248.t1 | AT2G28650 | 24.804 | 383 | 245 | 10 | 1 | 354 | 159 | 527 | 2.52e-16 | 81.3 |
Find 55 sgRNAs with CRISPR-Local
Find 77 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTTTGTTCAATCATAAATTT+AGG | 0.141823 | 5.1:+56893085 | MS.gene67248:CDS |
GTGAAATTGATGGTGGATTT+TGG | 0.146469 | 5.1:+56892142 | None:intergenic |
AGGGAAGATTGGAAACATTT+TGG | 0.160041 | 5.1:+56892917 | MS.gene67248:CDS |
ATTGAGAAAGATGGAATTTC+AGG | 0.216696 | 5.1:+56892246 | MS.gene67248:CDS |
GAACAATCTATGTCACATTA+AGG | 0.232665 | 5.1:+56892897 | MS.gene67248:CDS |
GGAGCAGTTTGAGAGAAAAT+TGG | 0.245428 | 5.1:+56892822 | MS.gene67248:CDS |
TGCACAAATGGTGCTTATAA+TGG | 0.262322 | 5.1:+56892801 | MS.gene67248:CDS |
CATTGAATTTGCTTTAGAAT+TGG | 0.275073 | 5.1:-56893049 | None:intergenic |
GATGATGTTGATTGTGTTAG+AGG | 0.281773 | 5.1:+56893312 | MS.gene67248:CDS |
ATTGAATTTGCTTTAGAATT+GGG | 0.341132 | 5.1:-56893048 | None:intergenic |
GTTTGAAATCCTCAACTTGT+TGG | 0.349734 | 5.1:+56892477 | MS.gene67248:CDS |
ATCATATAGTTGACGTTCAC+TGG | 0.350532 | 5.1:-56892326 | None:intergenic |
GAATTTCAGGATTACATGAT+TGG | 0.384710 | 5.1:+56892259 | MS.gene67248:CDS |
TTTGTTCAATCATAAATTTA+GGG | 0.390921 | 5.1:+56893086 | MS.gene67248:CDS |
ATTATTAGCATTGAGAAAGA+TGG | 0.400442 | 5.1:+56892237 | MS.gene67248:CDS |
GGGTACCCCTTAGTTGTTGA+TGG | 0.405637 | 5.1:+56892757 | MS.gene67248:CDS |
ATTGTGTTAGAGGATTAATT+AGG | 0.416010 | 5.1:+56893322 | MS.gene67248:CDS |
ATTCAGTCAATGAGCTTGTA+AGG | 0.418057 | 5.1:+56893345 | MS.gene67248:CDS |
TATTTCTCTGATGTTTGTCA+TGG | 0.418816 | 5.1:+56892388 | MS.gene67248:CDS |
ACAATGTTTCACAGTGTTGT+TGG | 0.429340 | 5.1:+56893216 | MS.gene67248:CDS |
TCCTGCTCCATCAACAACTA+AGG | 0.458253 | 5.1:-56892764 | None:intergenic |
AACAATCTATGTCACATTAA+GGG | 0.463303 | 5.1:+56892898 | MS.gene67248:CDS |
GATCTTTCTTACACCATATG+TGG | 0.463527 | 5.1:+56892627 | MS.gene67248:CDS |
ATGTCACATTAAGGGAAGAT+TGG | 0.464870 | 5.1:+56892906 | MS.gene67248:CDS |
CAACAATCTAACTCCACATA+TGG | 0.465562 | 5.1:-56892640 | None:intergenic |
CCCTTAGTTGTTGATGGAGC+AGG | 0.468854 | 5.1:+56892763 | MS.gene67248:CDS |
AGGATTACATGATTGGAAGA+TGG | 0.476310 | 5.1:+56892266 | MS.gene67248:CDS |
ATATGTGGAGTTAGATTGTT+GGG | 0.479056 | 5.1:+56892642 | MS.gene67248:CDS |
ATCATTGTTTCTTGATTCGT+TGG | 0.479186 | 5.1:+56892531 | MS.gene67248:CDS |
AGCCAAGTCAAAATATTATG+AGG | 0.483234 | 5.1:+56892846 | MS.gene67248:CDS |
GAGTTAGATTGTTGGGCTGA+TGG | 0.487239 | 5.1:+56892649 | MS.gene67248:CDS |
CTAGTGGCCTCACATGTCAT+TGG | 0.490339 | 5.1:-56892682 | None:intergenic |
TTAGATTGTTGGGCTGATGG+TGG | 0.508918 | 5.1:+56892652 | MS.gene67248:CDS |
AGGAAACAAACTGATTTCAA+TGG | 0.509983 | 5.1:-56893175 | None:intergenic |
TCAAACATACGCCATGTTGA+AGG | 0.515319 | 5.1:-56892460 | None:intergenic |
CATCATCTAGCAGAAACAAC+TGG | 0.516317 | 5.1:-56893296 | None:intergenic |
CATATGTGGAGTTAGATTGT+TGG | 0.518738 | 5.1:+56892641 | MS.gene67248:CDS |
CCTGCTCCATCAACAACTAA+GGG | 0.522317 | 5.1:-56892763 | None:intergenic |
CTTGTGGAATTCAGTCTACA+TGG | 0.534953 | 5.1:+56893112 | MS.gene67248:CDS |
TAGTATTCTAAGAGCAACCT+TGG | 0.539367 | 5.1:-56892299 | None:intergenic |
CAAACATACGCCATGTTGAA+GGG | 0.540085 | 5.1:-56892459 | None:intergenic |
CATAAATTTAGGGAGACTTG+TGG | 0.540938 | 5.1:+56893096 | MS.gene67248:CDS |
CAGTTACCGTAAGGAATGGT+TGG | 0.549924 | 5.1:+56892195 | MS.gene67248:CDS |
ACAACAGTTACCGTAAGGAA+TGG | 0.555501 | 5.1:+56892191 | MS.gene67248:CDS |
AGTCTTCCAACCATTCCTTA+CGG | 0.566989 | 5.1:-56892201 | None:intergenic |
AGCCGCGACGATGGAGCTAG+TGG | 0.583218 | 5.1:-56892698 | None:intergenic |
TCATATAGTTGACGTTCACT+GGG | 0.589257 | 5.1:-56892325 | None:intergenic |
AGTGAACGTCAACTATATGA+TGG | 0.592809 | 5.1:+56892328 | MS.gene67248:CDS |
CAAATCGAAGCCCTTCAACA+TGG | 0.595119 | 5.1:+56892449 | MS.gene67248:CDS |
GATTTACAACAGTTACCGTA+AGG | 0.610968 | 5.1:+56892186 | MS.gene67248:CDS |
TGCATACACGATATACTCAT+CGG | 0.615312 | 5.1:-56893247 | None:intergenic |
CTGCTCCATCAACAACTAAG+GGG | 0.676711 | 5.1:-56892762 | None:intergenic |
ACAGTGTCTCCAACAAGTTG+AGG | 0.677809 | 5.1:-56892486 | None:intergenic |
AGTACATCCAATGACATGTG+AGG | 0.717935 | 5.1:+56892675 | MS.gene67248:CDS |
GGCCACTAGCTCCATCGTCG+CGG | 0.724791 | 5.1:+56892696 | MS.gene67248:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTTGTTCAATCATAAATTTA+GGG | + | chr5.1:56893086-56893105 | MS.gene67248:CDS | 15.0% |
!! | GTTTGTTCAATCATAAATTT+AGG | + | chr5.1:56893085-56893104 | MS.gene67248:CDS | 20.0% |
!!! | ATCTTTATTTTATGCACAAA+TGG | + | chr5.1:56892789-56892808 | MS.gene67248:CDS | 20.0% |
!!! | ATTGAATTTGCTTTAGAATT+GGG | - | chr5.1:56893051-56893070 | None:intergenic | 20.0% |
! | AACAATCTATGTCACATTAA+GGG | + | chr5.1:56892898-56892917 | MS.gene67248:CDS | 25.0% |
! | AGTAAAAATCAAGAATCGAT+TGG | + | chr5.1:56892564-56892583 | MS.gene67248:CDS | 25.0% |
! | ATTGTGTTAGAGGATTAATT+AGG | + | chr5.1:56893322-56893341 | MS.gene67248:CDS | 25.0% |
! | GTAAAAATCAAGAATCGATT+GGG | + | chr5.1:56892565-56892584 | MS.gene67248:CDS | 25.0% |
!! | AATAAGTAGAGACATTTTCA+TGG | + | chr5.1:56892591-56892610 | MS.gene67248:CDS | 25.0% |
!! | AATCTGGAGAAAATTTTACA+AGG | + | chr5.1:56892736-56892755 | MS.gene67248:CDS | 25.0% |
!! | ATCTGGAGAAAATTTTACAA+GGG | + | chr5.1:56892737-56892756 | MS.gene67248:CDS | 25.0% |
!! | ATTATTAGCATTGAGAAAGA+TGG | + | chr5.1:56892237-56892256 | MS.gene67248:CDS | 25.0% |
!!! | CATTGAATTTGCTTTAGAAT+TGG | - | chr5.1:56893052-56893071 | None:intergenic | 25.0% |
AAGATGGATAAAAACTTCCA+AGG | + | chr5.1:56892282-56892301 | MS.gene67248:CDS | 30.0% | |
AGAAAAAATAGCGCAAAGTA+CGG | - | chr5.1:56892873-56892892 | None:intergenic | 30.0% | |
AGCCAAGTCAAAATATTATG+AGG | + | chr5.1:56892846-56892865 | MS.gene67248:CDS | 30.0% | |
ATATGTGGAGTTAGATTGTT+GGG | + | chr5.1:56892642-56892661 | MS.gene67248:CDS | 30.0% | |
ATTGAGAAAGATGGAATTTC+AGG | + | chr5.1:56892246-56892265 | MS.gene67248:CDS | 30.0% | |
GAACAATCTATGTCACATTA+AGG | + | chr5.1:56892897-56892916 | MS.gene67248:CDS | 30.0% | |
GAATTTCAGGATTACATGAT+TGG | + | chr5.1:56892259-56892278 | MS.gene67248:CDS | 30.0% | |
TATTTCTCTGATGTTTGTCA+TGG | + | chr5.1:56892388-56892407 | MS.gene67248:CDS | 30.0% | |
! | AGAGACATTTTCATGGAATT+TGG | + | chr5.1:56892598-56892617 | MS.gene67248:CDS | 30.0% |
! | AGGAAACAAACTGATTTCAA+TGG | - | chr5.1:56893178-56893197 | None:intergenic | 30.0% |
! | ATCATTGTTTCTTGATTCGT+TGG | + | chr5.1:56892531-56892550 | MS.gene67248:CDS | 30.0% |
! | GAGACATTTTCATGGAATTT+GGG | + | chr5.1:56892599-56892618 | MS.gene67248:CDS | 30.0% |
! | GTAATGAACTTTTCATATGC+AGG | - | chr5.1:56893198-56893217 | None:intergenic | 30.0% |
!! | AATAGGTTTTGTACAAACAC+AGG | + | chr5.1:56892943-56892962 | MS.gene67248:CDS | 30.0% |
!! | ATAGGTTTTGTACAAACACA+GGG | + | chr5.1:56892944-56892963 | MS.gene67248:CDS | 30.0% |
!! | TGTTTTTGATGAGCAACTAA+GGG | + | chr5.1:56893137-56893156 | MS.gene67248:CDS | 30.0% |
!! | TTTTTGGTCAAGACAAAATC+TGG | + | chr5.1:56892720-56892739 | MS.gene67248:CDS | 30.0% |
!!! | GTCCTCATAATATTTTGACT+TGG | - | chr5.1:56892851-56892870 | None:intergenic | 30.0% |
!!! | TGGAAACATTTTGGGATAAT+AGG | + | chr5.1:56892926-56892945 | MS.gene67248:CDS | 30.0% |
ACAATGTTTCACAGTGTTGT+TGG | + | chr5.1:56893216-56893235 | MS.gene67248:CDS | 35.0% | |
AGGATTACATGATTGGAAGA+TGG | + | chr5.1:56892266-56892285 | MS.gene67248:CDS | 35.0% | |
AGTGAACGTCAACTATATGA+TGG | + | chr5.1:56892328-56892347 | MS.gene67248:CDS | 35.0% | |
ATCATATAGTTGACGTTCAC+TGG | - | chr5.1:56892329-56892348 | None:intergenic | 35.0% | |
ATGTCACATTAAGGGAAGAT+TGG | + | chr5.1:56892906-56892925 | MS.gene67248:CDS | 35.0% | |
CAACAATCTAACTCCACATA+TGG | - | chr5.1:56892643-56892662 | None:intergenic | 35.0% | |
CATAAATTTAGGGAGACTTG+TGG | + | chr5.1:56893096-56893115 | MS.gene67248:CDS | 35.0% | |
CATATGTGGAGTTAGATTGT+TGG | + | chr5.1:56892641-56892660 | MS.gene67248:CDS | 35.0% | |
GATCTTTCTTACACCATATG+TGG | + | chr5.1:56892627-56892646 | MS.gene67248:CDS | 35.0% | |
GATTTACAACAGTTACCGTA+AGG | + | chr5.1:56892186-56892205 | MS.gene67248:CDS | 35.0% | |
TCATATAGTTGACGTTCACT+GGG | - | chr5.1:56892328-56892347 | None:intergenic | 35.0% | |
TGCACAAATGGTGCTTATAA+TGG | + | chr5.1:56892801-56892820 | MS.gene67248:CDS | 35.0% | |
TGCATACACGATATACTCAT+CGG | - | chr5.1:56893250-56893269 | None:intergenic | 35.0% | |
! | AGGGAAGATTGGAAACATTT+TGG | + | chr5.1:56892917-56892936 | MS.gene67248:CDS | 35.0% |
! | GATGATGTTGATTGTGTTAG+AGG | + | chr5.1:56893312-56893331 | MS.gene67248:CDS | 35.0% |
! | GGGAAGATTGGAAACATTTT+GGG | + | chr5.1:56892918-56892937 | MS.gene67248:CDS | 35.0% |
! | GTTTGAAATCCTCAACTTGT+TGG | + | chr5.1:56892477-56892496 | MS.gene67248:CDS | 35.0% |
! | GTTTTTGATGAGCAACTAAG+GGG | + | chr5.1:56893138-56893157 | MS.gene67248:CDS | 35.0% |
! | TAGTATTCTAAGAGCAACCT+TGG | - | chr5.1:56892302-56892321 | None:intergenic | 35.0% |
!! | AACTCTATTTTAGAAGCTCG+TGG | + | chr5.1:56892977-56892996 | MS.gene67248:CDS | 35.0% |
!! | GTGTTTTTGATGAGCAACTA+AGG | + | chr5.1:56893136-56893155 | MS.gene67248:CDS | 35.0% |
!! | TTTTAGAAGCTCGTGGAATA+AGG | + | chr5.1:56892984-56893003 | MS.gene67248:CDS | 35.0% |
ACAACAGTTACCGTAAGGAA+TGG | + | chr5.1:56892191-56892210 | MS.gene67248:CDS | 40.0% | |
AGTACATCCAATGACATGTG+AGG | + | chr5.1:56892675-56892694 | MS.gene67248:CDS | 40.0% | |
AGTCTTCCAACCATTCCTTA+CGG | - | chr5.1:56892204-56892223 | None:intergenic | 40.0% | |
CAAACATACGCCATGTTGAA+GGG | - | chr5.1:56892462-56892481 | None:intergenic | 40.0% | |
CATCATCTAGCAGAAACAAC+TGG | - | chr5.1:56893299-56893318 | None:intergenic | 40.0% | |
CTTGTGGAATTCAGTCTACA+TGG | + | chr5.1:56893112-56893131 | MS.gene67248:CDS | 40.0% | |
GGAGCAGTTTGAGAGAAAAT+TGG | + | chr5.1:56892822-56892841 | MS.gene67248:CDS | 40.0% | |
TCAAACATACGCCATGTTGA+AGG | - | chr5.1:56892463-56892482 | None:intergenic | 40.0% | |
ACAGTGTCTCCAACAAGTTG+AGG | - | chr5.1:56892489-56892508 | None:intergenic | 45.0% | |
CAAATCGAAGCCCTTCAACA+TGG | + | chr5.1:56892449-56892468 | MS.gene67248:CDS | 45.0% | |
CAGTTACCGTAAGGAATGGT+TGG | + | chr5.1:56892195-56892214 | MS.gene67248:CDS | 45.0% | |
CCTGCTCCATCAACAACTAA+GGG | - | chr5.1:56892766-56892785 | None:intergenic | 45.0% | |
CTGCTCCATCAACAACTAAG+GGG | - | chr5.1:56892765-56892784 | None:intergenic | 45.0% | |
GAGTTAGATTGTTGGGCTGA+TGG | + | chr5.1:56892649-56892668 | MS.gene67248:CDS | 45.0% | |
TCCTGCTCCATCAACAACTA+AGG | - | chr5.1:56892767-56892786 | None:intergenic | 45.0% | |
TTAGATTGTTGGGCTGATGG+TGG | + | chr5.1:56892652-56892671 | MS.gene67248:CDS | 45.0% | |
CTAGTGGCCTCACATGTCAT+TGG | - | chr5.1:56892685-56892704 | None:intergenic | 50.0% | |
GGGTACCCCTTAGTTGTTGA+TGG | + | chr5.1:56892757-56892776 | MS.gene67248:CDS | 50.0% | |
! | CCCTTAGTTGTTGATGGAGC+AGG | + | chr5.1:56892763-56892782 | MS.gene67248:CDS | 50.0% |
TGACCAAAAAGCCGCGACGA+TGG | - | chr5.1:56892710-56892729 | None:intergenic | 55.0% | |
! | GCTCCATCGTCGCGGCTTTT+TGG | + | chr5.1:56892704-56892723 | MS.gene67248:CDS | 60.0% |
AGCCGCGACGATGGAGCTAG+TGG | - | chr5.1:56892701-56892720 | None:intergenic | 65.0% | |
GGCCACTAGCTCCATCGTCG+CGG | + | chr5.1:56892696-56892715 | MS.gene67248:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.1 | gene | 56892151 | 56893365 | 56892151 | ID=MS.gene67248 |
chr5.1 | mRNA | 56892151 | 56893365 | 56892151 | ID=MS.gene67248.t1;Parent=MS.gene67248 |
chr5.1 | exon | 56892151 | 56893365 | 56892151 | ID=MS.gene67248.t1.exon1;Parent=MS.gene67248.t1 |
chr5.1 | CDS | 56892151 | 56893365 | 56892151 | ID=cds.MS.gene67248.t1;Parent=MS.gene67248.t1 |
Gene Sequence |
Protein sequence |