AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene67406

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene67406.t1 MTR_6g034870 50.549 273 11 7 1 163 1 259 7.03e-25 103
MS.gene67406.t1 MTR_1g033130 56.019 216 30 13 85 248 610 812 9.20e-16 77.8
MS.gene67406.t1 MTR_1g033130 55.605 223 30 14 63 231 605 812 2.10e-14 73.6
MS.gene67406.t1 MTR_1g033130 52.804 214 26 13 30 180 611 812 1.02e-11 65.9
MS.gene67406.t1 MTR_1g094130 41.429 280 90 6 1 249 27 263 3.11e-13 68.9
MS.gene67406.t1 MTR_6g034905 85.393 89 3 1 1 89 1 79 1.08e-12 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 147 sgRNAs with CRISPR-Local

Find 120 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTAATTGTTTGCTGAAGTT+TGG 0.250438 6.1:-15246155 None:intergenic
GGAGAGTAGACGGGTGGAGG+TGG 0.286343 6.1:-15246612 None:intergenic
GGTGAGTAGACGGGTGGAGG+TGG 0.300627 6.1:-15246663 None:intergenic
GGTGAGTAGACGGGTGGAGG+AGG 0.319166 6.1:-15246510 None:intergenic
GGTGAGTAGACGGGTGGAGG+AGG 0.319166 6.1:-15246561 None:intergenic
GGTGAGTAAACGGGTGGAGG+TGG 0.319332 6.1:-15246408 None:intergenic
CACCACCACCACCAGTTTAC+AGG 0.325155 6.1:+15246682 MS.gene67406:CDS
GCGTATTTGTATGGCTTAGA+TGG 0.355782 6.1:-15246198 None:intergenic
GGTGACTTGTACTTGTAAAC+TGG 0.361961 6.1:-15246795 None:intergenic
GGTGGAGAGTAGACGGGTGG+AGG 0.376600 6.1:-15246615 None:intergenic
GGTGACTTATATTTATAAAC+AGG 0.391402 6.1:-15246285 None:intergenic
TAAGAGTAATGGAGGCCATT+TGG 0.393938 6.1:-15246095 None:intergenic
GGTGGTGAGTAGACAGGTGG+GGG 0.401670 6.1:-15246258 None:intergenic
GTAATTGTTTGCTGAAGTTT+GGG 0.410378 6.1:-15246154 None:intergenic
GGGGACTTGTACTTGTAAAC+AGG 0.412356 6.1:-15246642 None:intergenic
GGTGAGTAAGCAGGAGGAGG+AGG 0.413816 6.1:-15246867 None:intergenic
GGTGAGTAGACAGGTGGAGG+TGG 0.416294 6.1:-15246459 None:intergenic
GGGGACTTGTATTTGTAAAC+TGG 0.418805 6.1:-15246591 None:intergenic
GGGGACTTGTATTTGTAAAC+TGG 0.418805 6.1:-15246744 None:intergenic
TACTTGTAAACTGGTGGTGG+TGG 0.421070 6.1:-15246225 None:intergenic
GGTGAGTAGACGGGTGGAGG+TGG 0.421961 6.1:-15246765 None:intergenic
GGTGGTGAGTAGACGGGTGG+AGG 0.432340 6.1:-15246513 None:intergenic
GGTGGTGAGTAGACGGGTGG+AGG 0.432340 6.1:-15246564 None:intergenic
TGGTGGAGGTGGTGAGTAAA+CGG 0.433460 6.1:-15246418 None:intergenic
GGAGGTGGTGAGTAGACAGG+TGG 0.439184 6.1:-15246261 None:intergenic
GGTGGGGAAGCGTATTTGTA+TGG 0.439487 6.1:-15246207 None:intergenic
GGTGGTGAGTAGACGGGTGG+AGG 0.441074 6.1:-15246666 None:intergenic
GGAGACTTATACTTGTAAAC+TGG 0.445660 6.1:-15246846 None:intergenic
GGAGGTGGAGAGTAGACGGG+TGG 0.446066 6.1:-15246618 None:intergenic
GGTGAGTAGACAGGTGGAGG+AGG 0.447436 6.1:-15246714 None:intergenic
GGTGACTTATACTTGTAAAC+AGG 0.447648 6.1:-15246336 None:intergenic
GGTGATTTATACTTGTAAAC+TGG 0.448161 6.1:-15246234 None:intergenic
GGTGGTGAGTAGACAGGTGG+AGG 0.450883 6.1:-15246717 None:intergenic
GGTGAATAGACAGGAGGAGG+AGG 0.455905 6.1:-15246816 None:intergenic
GGAAAATATGAGGTTCCAAA+TGG 0.456109 6.1:+15246080 None:intergenic
GGTGGAGGTGGTGAGTAGAC+AGG 0.456794 6.1:-15246366 None:intergenic
GGGGACTTGTACTTGTAAAC+TGG 0.458453 6.1:-15246489 None:intergenic
GGGGACTTGTACTTGTAAAC+TGG 0.458453 6.1:-15246540 None:intergenic
GGGGACTTGTACTTGTAAAC+TGG 0.460087 6.1:-15246438 None:intergenic
GGTGGTGAGTAGACTGGTGG+AGG 0.460575 6.1:-15246309 None:intergenic
GGTGGTGAGTAGACAGGTGG+AGG 0.460575 6.1:-15246462 None:intergenic
GTGAGTAGACGGGTGGAGGT+GGG 0.465366 6.1:-15246662 None:intergenic
GGAGACTTGTACCTGTAAAC+TGG 0.467295 6.1:-15246693 None:intergenic
GGTGGTGAGTAAACGGGTGG+AGG 0.470662 6.1:-15246411 None:intergenic
GGTGGAGGTGGTGAGTAAGC+AGG 0.475649 6.1:-15246876 None:intergenic
GGTGGTGAGTAAGCAGGAGG+AGG 0.480025 6.1:-15246870 None:intergenic
GGTGGTGAGTAGACAGGTGG+AGG 0.483587 6.1:-15246360 None:intergenic
TACTTGTAAACTGGTGGTGG+TGG 0.483654 6.1:-15246480 None:intergenic
TTGCTGAAGTTTGGGATGGC+AGG 0.487862 6.1:-15246146 None:intergenic
GGTGGAGGTGGTGAGTAAAC+GGG 0.491567 6.1:-15246417 None:intergenic
GGTGGTGAATAGACAGGAGG+AGG 0.492627 6.1:-15246819 None:intergenic
GTTGGTGAGTAGACGGGTGG+AGG 0.494251 6.1:-15246768 None:intergenic
GTGAGTAAACGGGTGGAGGT+GGG 0.494340 6.1:-15246407 None:intergenic
GAGGTGGTGAGTAGACAGGT+GGG 0.495523 6.1:-15246260 None:intergenic
GTGAGTAGACGGGTGGAGGT+GGG 0.496080 6.1:-15246764 None:intergenic
GAGAGTAGACGGGTGGAGGT+GGG 0.500985 6.1:-15246611 None:intergenic
GGAGTTGGTGAGTAGACGGG+TGG 0.504102 6.1:-15246771 None:intergenic
GGTGAGTAGACAGGTGGAGG+TGG 0.506411 6.1:-15246357 None:intergenic
TACCTGTAAACTGGTGGTGG+TGG 0.508427 6.1:-15246684 None:intergenic
TATGGCTTAGATGGTGGTGG+TGG 0.508770 6.1:-15246189 None:intergenic
GGTGAGTAGACTGGTGGAGG+TGG 0.509653 6.1:-15246306 None:intergenic
TATTTATAAACAGGTGGAGG+TGG 0.516161 6.1:-15246276 None:intergenic
TGAGTAGACGGGTGGAGGTG+GGG 0.516214 6.1:-15246661 None:intergenic
TACTTGTAAACTGGTGGAGG+TGG 0.518842 6.1:-15246429 None:intergenic
TACTTGTAAACTGGTGGAGG+TGG 0.518842 6.1:-15246531 None:intergenic
TAGATATAATGTGGTGGAGG+TGG 0.521642 6.1:-15246888 None:intergenic
GTGAGTAGACAGGTGGAGGT+GGG 0.524996 6.1:-15246458 None:intergenic
TAGTAATGGTAAGGAGGAGG+TGG 0.525284 6.1:-15246918 None:intergenic
GTGAGTAGACGGGTGGAGGA+GGG 0.525831 6.1:-15246509 None:intergenic
GTGAGTAGACGGGTGGAGGA+GGG 0.525831 6.1:-15246560 None:intergenic
TGAGTAGACGGGTGGAGGTG+GGG 0.526037 6.1:-15246763 None:intergenic
TGAGTAGACGGGTGGAGGAG+GGG 0.526670 6.1:-15246508 None:intergenic
TGAGTAGACGGGTGGAGGAG+GGG 0.526670 6.1:-15246559 None:intergenic
AGAGTAGACGGGTGGAGGTG+GGG 0.526670 6.1:-15246610 None:intergenic
GGTGGTGGTGGTGAGTAGAC+GGG 0.529501 6.1:-15246672 None:intergenic
TACTTGTAAACAGGTGGAGG+TGG 0.529739 6.1:-15246327 None:intergenic
GGTGGAGGTGGTGAGTAGAC+GGG 0.530290 6.1:-15246519 None:intergenic
GGTGGAGGTGGTGAGTAGAC+GGG 0.530290 6.1:-15246570 None:intergenic
TTGTACTTGTAAACTGGTGG+TGG 0.532190 6.1:-15246483 None:intergenic
CGTAAACCACCATTTAGTAA+TGG 0.534220 6.1:-15246932 None:intergenic
TTGTATGGCTTAGATGGTGG+TGG 0.534713 6.1:-15246192 None:intergenic
GGTGGTGGTGGTGAGTAGAC+AGG 0.535568 6.1:-15246468 None:intergenic
TGAGTAAACGGGTGGAGGTG+GGG 0.537423 6.1:-15246406 None:intergenic
GGTGGAGGTGGTGAGTAGAC+AGG 0.541551 6.1:-15246264 None:intergenic
ACCACCATTTAGTAATGGTA+AGG 0.543749 6.1:-15246927 None:intergenic
TGGTGGTGGTGGTGAGTAGA+CGG 0.545412 6.1:-15246673 None:intergenic
TACTTGTAAACTGGTGGAGG+TGG 0.545632 6.1:-15246837 None:intergenic
CAATGCAATAGTAAGAGTAA+TGG 0.551028 6.1:-15246106 None:intergenic
GACTTGTATTTGTAAACTGG+TGG 0.551063 6.1:-15246588 None:intergenic
GACTTGTATTTGTAAACTGG+TGG 0.551063 6.1:-15246741 None:intergenic
TACTTGTAAAGTGGTGGAGG+TGG 0.552152 6.1:-15246378 None:intergenic
TATTTGTAAACTGGTGGAGG+TGG 0.555899 6.1:-15246582 None:intergenic
TATTTGTAAACTGGTGGAGG+TGG 0.555899 6.1:-15246735 None:intergenic
GGTGGAGGTGGTGAGTAGAC+AGG 0.556465 6.1:-15246723 None:intergenic
TGGTGGAGGTGGTGAGTAGA+CGG 0.560893 6.1:-15246520 None:intergenic
TGGTGGAGGTGGTGAGTAGA+CGG 0.560893 6.1:-15246571 None:intergenic
GTGACTTGTACTTGTAAACT+GGG 0.563890 6.1:-15246794 None:intergenic
TGAGTAGACAGGTGGAGGTG+GGG 0.563918 6.1:-15246457 None:intergenic
GGTGGAGGTGGTGAATAGAC+AGG 0.569201 6.1:-15246825 None:intergenic
GGTGGTGGTGAGTAGACAGG+TGG 0.569801 6.1:-15246465 None:intergenic
CTTGTAAACTGGTGGTGGTG+GGG 0.574955 6.1:-15246223 None:intergenic
TTGTATTTGTAAACTGGTGG+AGG 0.576012 6.1:-15246585 None:intergenic
TTGTATTTGTAAACTGGTGG+AGG 0.576012 6.1:-15246738 None:intergenic
TTATACTTGTAAACTGGTGG+TGG 0.577426 6.1:-15246228 None:intergenic
GGTGGAGGTGGTGAGTAGAC+TGG 0.577950 6.1:-15246315 None:intergenic
TTATATTTATAAACAGGTGG+AGG 0.579141 6.1:-15246279 None:intergenic
GACTTATACTTGTAAACTGG+TGG 0.580181 6.1:-15246843 None:intergenic
CTTAGATGGTGGTGGTGGAG+AGG 0.582008 6.1:-15246184 None:intergenic
GACTTATATTTATAAACAGG+TGG 0.583330 6.1:-15246282 None:intergenic
GGAGGTGGTGAGTAGACAGG+TGG 0.584342 6.1:-15246363 None:intergenic
GGAGGTGGTGAGTAGACAGG+TGG 0.584342 6.1:-15246720 None:intergenic
GGTGGTGGTGAGTAGACGGG+TGG 0.586082 6.1:-15246669 None:intergenic
TGCAATAGTAAGAGTAATGG+AGG 0.586366 6.1:-15246103 None:intergenic
TTATACTTGTAAACTGGTGG+AGG 0.588467 6.1:-15246840 None:intergenic
ACTTGTAAACTGGTGGTGGT+GGG 0.589086 6.1:-15246224 None:intergenic
GACTTGTACTTGTAAAGTGG+TGG 0.590287 6.1:-15246384 None:intergenic
ATTTAGTAATGGTAAGGAGG+AGG 0.592078 6.1:-15246921 None:intergenic
GAGTAGATATAATGTGGTGG+AGG 0.594587 6.1:-15246891 None:intergenic
GGAGGTGGTGAGTAAGCAGG+AGG 0.598069 6.1:-15246873 None:intergenic
TTGTACTTGTAAACTGGTGG+AGG 0.598373 6.1:-15246432 None:intergenic
TTGTACTTGTAAACTGGTGG+AGG 0.598373 6.1:-15246534 None:intergenic
GACTTGTACTTGTAAACTGG+TGG 0.601010 6.1:-15246435 None:intergenic
GACTTATACTTGTAAACAGG+TGG 0.601528 6.1:-15246333 None:intergenic
TTATACTTGTAAACAGGTGG+AGG 0.603042 6.1:-15246330 None:intergenic
GGAGGTGGTGAGTAGACGGG+TGG 0.603335 6.1:-15246516 None:intergenic
GGAGGTGGTGAGTAGACGGG+TGG 0.603335 6.1:-15246567 None:intergenic
GACTTGTACTTGTAAACTGG+TGG 0.604396 6.1:-15246537 None:intergenic
TTGTACTTGTAAAGTGGTGG+AGG 0.604923 6.1:-15246381 None:intergenic
GGAGGTGGTGAGTAGACTGG+TGG 0.605274 6.1:-15246312 None:intergenic
GGGGACTTGTACTTGTAAAG+TGG 0.605809 6.1:-15246387 None:intergenic
TTGTACCTGTAAACTGGTGG+TGG 0.609022 6.1:-15246687 None:intergenic
AGGTGGTGAGTAGACAGGTG+GGG 0.609414 6.1:-15246259 None:intergenic
ACCATTTAGTAATGGTAAGG+AGG 0.612519 6.1:-15246924 None:intergenic
GGAGGTGGTGAGTAAACGGG+TGG 0.620262 6.1:-15246414 None:intergenic
GGTGAAGAGTAGATATAATG+TGG 0.631465 6.1:-15246897 None:intergenic
GGAGGTGGTGAATAGACAGG+AGG 0.632836 6.1:-15246822 None:intergenic
TTGTTTGCTGAAGTTTGGGA+TGG 0.632960 6.1:-15246150 None:intergenic
GATTTATACTTGTAAACTGG+TGG 0.644397 6.1:-15246231 None:intergenic
GAAGAGTAGATATAATGTGG+TGG 0.646587 6.1:-15246894 None:intergenic
GGGACTTGTACTTGTAAACA+GGG 0.650324 6.1:-15246641 None:intergenic
GACTTGTACTTGTAAACTGG+TGG 0.657109 6.1:-15246486 None:intergenic
GACTTGTACTTGTAAACAGG+GGG 0.669699 6.1:-15246639 None:intergenic
GACTTGTACTTGTAAACTGG+GGG 0.671843 6.1:-15246792 None:intergenic
TATTTGTATGGCTTAGATGG+TGG 0.691843 6.1:-15246195 None:intergenic
TGACTTGTACTTGTAAACTG+GGG 0.694353 6.1:-15246793 None:intergenic
GACTTGTACCTGTAAACTGG+TGG 0.715479 6.1:-15246690 None:intergenic
GGACTTGTACTTGTAAACAG+GGG 0.759333 6.1:-15246640 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! GACTTATATTTATAAACAGG+TGG - chr6.1:15246285-15246304 None:intergenic 25.0%
! GGTGACTTATATTTATAAAC+AGG - chr6.1:15246288-15246307 None:intergenic 25.0%
! TTATATTTATAAACAGGTGG+AGG - chr6.1:15246282-15246301 None:intergenic 25.0%
CAATGCAATAGTAAGAGTAA+TGG - chr6.1:15246109-15246128 None:intergenic 30.0%
GATTTATACTTGTAAACTGG+TGG - chr6.1:15246234-15246253 None:intergenic 30.0%
GGTGATTTATACTTGTAAAC+TGG - chr6.1:15246237-15246256 None:intergenic 30.0%
! GTAATTGTTTGCTGAAGTTT+GGG - chr6.1:15246157-15246176 None:intergenic 30.0%
GAAGAGTAGATATAATGTGG+TGG - chr6.1:15246897-15246916 None:intergenic 35.0%
GACTTATACTTGTAAACAGG+TGG - chr6.1:15246336-15246355 None:intergenic 35.0%
GACTTATACTTGTAAACTGG+TGG - chr6.1:15246846-15246865 None:intergenic 35.0%
GACTTGTATTTGTAAACTGG+TGG - chr6.1:15246591-15246610 None:intergenic 35.0%
GGAGACTTATACTTGTAAAC+TGG - chr6.1:15246849-15246868 None:intergenic 35.0%
GGTGAAGAGTAGATATAATG+TGG - chr6.1:15246900-15246919 None:intergenic 35.0%
GGTGACTTATACTTGTAAAC+AGG - chr6.1:15246339-15246358 None:intergenic 35.0%
TATTTATAAACAGGTGGAGG+TGG - chr6.1:15246279-15246298 None:intergenic 35.0%
TATTTGTATGGCTTAGATGG+TGG - chr6.1:15246198-15246217 None:intergenic 35.0%
TGCAATAGTAAGAGTAATGG+AGG - chr6.1:15246106-15246125 None:intergenic 35.0%
TTATACTTGTAAACAGGTGG+AGG - chr6.1:15246333-15246352 None:intergenic 35.0%
TTATACTTGTAAACTGGTGG+AGG - chr6.1:15246231-15246250 None:intergenic 35.0%
TTATACTTGTAAACTGGTGG+TGG - chr6.1:15246231-15246250 None:intergenic 35.0%
TTGTATTTGTAAACTGGTGG+AGG - chr6.1:15246588-15246607 None:intergenic 35.0%
! CGTAATTGTTTGCTGAAGTT+TGG - chr6.1:15246158-15246177 None:intergenic 35.0%
! GTGACTTGTACTTGTAAACT+GGG - chr6.1:15246797-15246816 None:intergenic 35.0%
! TGACTTGTACTTGTAAACTG+GGG - chr6.1:15246796-15246815 None:intergenic 35.0%
GACTTGTACTTGTAAACAGG+GGG - chr6.1:15246642-15246661 None:intergenic 40.0%
GACTTGTACTTGTAAACTGG+GGG - chr6.1:15246438-15246457 None:intergenic 40.0%
GACTTGTACTTGTAAACTGG+TGG - chr6.1:15246438-15246457 None:intergenic 40.0%
GACTTGTACTTGTAAAGTGG+TGG - chr6.1:15246387-15246406 None:intergenic 40.0%
GAGTAGATATAATGTGGTGG+AGG - chr6.1:15246894-15246913 None:intergenic 40.0%
GCGTATTTGTATGGCTTAGA+TGG - chr6.1:15246201-15246220 None:intergenic 40.0%
GGACTTGTACTTGTAAACAG+GGG - chr6.1:15246643-15246662 None:intergenic 40.0%
GGGACTTGTACTTGTAAACA+GGG - chr6.1:15246644-15246663 None:intergenic 40.0%
GGGGACTTGTATTTGTAAAC+TGG - chr6.1:15246594-15246613 None:intergenic 40.0%
TATTTGTAAACTGGTGGAGG+TGG - chr6.1:15246585-15246604 None:intergenic 40.0%
TTGTACTTGTAAACTGGTGG+AGG - chr6.1:15246435-15246454 None:intergenic 40.0%
TTGTACTTGTAAACTGGTGG+TGG - chr6.1:15246435-15246454 None:intergenic 40.0%
TTGTACTTGTAAAGTGGTGG+AGG - chr6.1:15246384-15246403 None:intergenic 40.0%
! GGTGACTTGTACTTGTAAAC+TGG - chr6.1:15246798-15246817 None:intergenic 40.0%
! TAAGAGTAATGGAGGCCATT+TGG - chr6.1:15246098-15246117 None:intergenic 40.0%
! TAGATATAATGTGGTGGAGG+TGG - chr6.1:15246891-15246910 None:intergenic 40.0%
! TTGTTTGCTGAAGTTTGGGA+TGG - chr6.1:15246153-15246172 None:intergenic 40.0%
GACTTGTACCTGTAAACTGG+TGG - chr6.1:15246693-15246712 None:intergenic 45.0%
GGAGACTTGTACCTGTAAAC+TGG - chr6.1:15246696-15246715 None:intergenic 45.0%
GGGGACTTGTACTTGTAAAC+AGG - chr6.1:15246441-15246460 None:intergenic 45.0%
GGGGACTTGTACTTGTAAAC+TGG - chr6.1:15246441-15246460 None:intergenic 45.0%
GGGGACTTGTACTTGTAAAG+TGG - chr6.1:15246390-15246409 None:intergenic 45.0%
TACTTGTAAACAGGTGGAGG+TGG - chr6.1:15246330-15246349 None:intergenic 45.0%
TACTTGTAAACTGGGGGAGT+TGG - chr6.1:15246789-15246808 None:intergenic 45.0%
TACTTGTAAACTGGTGGAGG+TGG - chr6.1:15246432-15246451 None:intergenic 45.0%
TAGTAATGGTAAGGAGGAGG+TGG - chr6.1:15246921-15246940 None:intergenic 45.0%
TTGTACCTGTAAACTGGTGG+TGG - chr6.1:15246690-15246709 None:intergenic 45.0%
TTGTACTTGTAAACAGGGGG+AGG - chr6.1:15246639-15246658 None:intergenic 45.0%
! TACTTGTAAAGTGGTGGAGG+TGG - chr6.1:15246381-15246400 None:intergenic 45.0%
! TTGTATGGCTTAGATGGTGG+TGG - chr6.1:15246195-15246214 None:intergenic 45.0%
!! ACTTGTAAACTGGTGGTGGT+GGG - chr6.1:15246227-15246246 None:intergenic 45.0%
!! TACTTGTAAACTGGTGGTGG+TGG - chr6.1:15246228-15246247 None:intergenic 45.0%
TACTTGTAAACAGGGGGAGG+TGG - chr6.1:15246636-15246655 None:intergenic 50.0%
TGGTGGAGGTGGTGAGTAAA+CGG - chr6.1:15246421-15246440 None:intergenic 50.0%
! GGTGGGGAAGCGTATTTGTA+TGG - chr6.1:15246210-15246229 None:intergenic 50.0%
! TTGCTGAAGTTTGGGATGGC+AGG - chr6.1:15246149-15246168 None:intergenic 50.0%
!! CTTGTAAACTGGTGGTGGTG+GGG - chr6.1:15246226-15246245 None:intergenic 50.0%
!! TACCTGTAAACTGGTGGTGG+TGG - chr6.1:15246687-15246706 None:intergenic 50.0%
!! TATGGCTTAGATGGTGGTGG+TGG - chr6.1:15246192-15246211 None:intergenic 50.0%
AGGTGGTGAGTAGACAGGTG+GGG - chr6.1:15246262-15246281 None:intergenic 55.0%
CACCACCACCACCAGTTTAC+AGG + chr6.1:15246478-15246497 MS.gene67406:CDS 55.0%
GAGGTGGTGAGTAGACAGGT+GGG - chr6.1:15246263-15246282 None:intergenic 55.0%
GGAGGTGGTGAATAGACAGG+AGG - chr6.1:15246825-15246844 None:intergenic 55.0%
GGTGAATAGACAGGAGGAGG+AGG - chr6.1:15246819-15246838 None:intergenic 55.0%
GGTGGAGGTGGTGAATAGAC+AGG - chr6.1:15246828-15246847 None:intergenic 55.0%
GGTGGAGGTGGTGAGTAAAC+GGG - chr6.1:15246420-15246439 None:intergenic 55.0%
GGTGGTGAATAGACAGGAGG+AGG - chr6.1:15246822-15246841 None:intergenic 55.0%
GTGAGTAAACGGGTGGAGGT+GGG - chr6.1:15246410-15246429 None:intergenic 55.0%
GTGAGTAGACAGGTGGAGGT+GGG - chr6.1:15246359-15246378 None:intergenic 55.0%
TGAGTAAACGGGTGGAGGTG+GGG - chr6.1:15246409-15246428 None:intergenic 55.0%
TGAGTAGACAGGTGGAGGTG+GGG - chr6.1:15246358-15246377 None:intergenic 55.0%
TGGTGGAGGTGGTGAGTAGA+CGG - chr6.1:15246370-15246389 None:intergenic 55.0%
!! CTTAGATGGTGGTGGTGGAG+AGG - chr6.1:15246187-15246206 None:intergenic 55.0%
!! TGGGGGAGTTGGTGAGTAGA+CGG - chr6.1:15246778-15246797 None:intergenic 55.0%
!! TGGTGGTGGTGGTGAGTAGA+CGG - chr6.1:15246472-15246491 None:intergenic 55.0%
AGAGTAGACGGGTGGAGGTG+GGG - chr6.1:15246613-15246632 None:intergenic 60.0%
AGGGGGAGGTGGAGAGTAGA+CGG - chr6.1:15246625-15246644 None:intergenic 60.0%
GAGAGTAGACGGGTGGAGGT+GGG - chr6.1:15246614-15246633 None:intergenic 60.0%
GGAGGTGGTGAGTAAACGGG+TGG - chr6.1:15246417-15246436 None:intergenic 60.0%
GGAGGTGGTGAGTAAGCAGG+AGG - chr6.1:15246876-15246895 None:intergenic 60.0%
GGAGGTGGTGAGTAGACAGG+TGG - chr6.1:15246264-15246283 None:intergenic 60.0%
GGAGGTGGTGAGTAGACTGG+TGG - chr6.1:15246315-15246334 None:intergenic 60.0%
GGTGAGTAAACGGGTGGAGG+TGG - chr6.1:15246411-15246430 None:intergenic 60.0%
GGTGAGTAAGCAGGAGGAGG+AGG - chr6.1:15246870-15246889 None:intergenic 60.0%
GGTGAGTAGACAGGTGGAGG+AGG - chr6.1:15246360-15246379 None:intergenic 60.0%
GGTGAGTAGACAGGTGGAGG+TGG - chr6.1:15246360-15246379 None:intergenic 60.0%
GGTGAGTAGACTGGTGGAGG+TGG - chr6.1:15246309-15246328 None:intergenic 60.0%
GGTGGAGGTGGTGAGTAAGC+AGG - chr6.1:15246879-15246898 None:intergenic 60.0%
GGTGGAGGTGGTGAGTAGAC+AGG - chr6.1:15246267-15246286 None:intergenic 60.0%
GGTGGAGGTGGTGAGTAGAC+GGG - chr6.1:15246267-15246286 None:intergenic 60.0%
GGTGGAGGTGGTGAGTAGAC+TGG - chr6.1:15246267-15246286 None:intergenic 60.0%
GGTGGTGAGTAAACGGGTGG+AGG - chr6.1:15246414-15246433 None:intergenic 60.0%
GGTGGTGAGTAAGCAGGAGG+AGG - chr6.1:15246873-15246892 None:intergenic 60.0%
GGTGGTGAGTAGACAGGTGG+AGG - chr6.1:15246261-15246280 None:intergenic 60.0%
GGTGGTGAGTAGACAGGTGG+GGG - chr6.1:15246261-15246280 None:intergenic 60.0%
GGTGGTGAGTAGACTGGTGG+AGG - chr6.1:15246312-15246331 None:intergenic 60.0%
GTGAGTAGACGGGTGGAGGA+GGG - chr6.1:15246512-15246531 None:intergenic 60.0%
GTGAGTAGACGGGTGGAGGT+GGG - chr6.1:15246665-15246684 None:intergenic 60.0%
TGAGTAGACGGGTGGAGGAG+GGG - chr6.1:15246511-15246530 None:intergenic 60.0%
TGAGTAGACGGGTGGAGGTG+GGG - chr6.1:15246664-15246683 None:intergenic 60.0%
! GGTGGTGGTGAGTAGACAGG+TGG - chr6.1:15246468-15246487 None:intergenic 60.0%
! GTTGGTGAGTAGACGGGTGG+AGG - chr6.1:15246771-15246790 None:intergenic 60.0%
!! GGAGTTGGTGAGTAGACGGG+TGG - chr6.1:15246774-15246793 None:intergenic 60.0%
!! GGGGGAGTTGGTGAGTAGAC+GGG - chr6.1:15246777-15246796 None:intergenic 60.0%
!! GGTGGTGGTGGTGAGTAGAC+AGG - chr6.1:15246471-15246490 None:intergenic 60.0%
!! GGTGGTGGTGGTGAGTAGAC+GGG - chr6.1:15246471-15246490 None:intergenic 60.0%
GGAGAGTAGACGGGTGGAGG+TGG - chr6.1:15246615-15246634 None:intergenic 65.0%
GGAGGTGGAGAGTAGACGGG+TGG - chr6.1:15246621-15246640 None:intergenic 65.0%
GGAGGTGGTGAGTAGACGGG+TGG - chr6.1:15246519-15246538 None:intergenic 65.0%
GGGGGAGGTGGAGAGTAGAC+GGG - chr6.1:15246624-15246643 None:intergenic 65.0%
GGTGAGTAGACAGGTGGGGG+TGG - chr6.1:15246258-15246277 None:intergenic 65.0%
GGTGAGTAGACGGGTGGAGG+AGG - chr6.1:15246513-15246532 None:intergenic 65.0%
GGTGAGTAGACGGGTGGAGG+TGG - chr6.1:15246513-15246532 None:intergenic 65.0%
GGTGGAGAGTAGACGGGTGG+AGG - chr6.1:15246618-15246637 None:intergenic 65.0%
GGTGGTGAGTAGACGGGTGG+AGG - chr6.1:15246516-15246535 None:intergenic 65.0%
! GGTGGTGGTGAGTAGACGGG+TGG - chr6.1:15246672-15246691 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 15246087 15246941 15246087 ID=MS.gene67406
chr6.1 mRNA 15246087 15246941 15246087 ID=MS.gene67406.t1;Parent=MS.gene67406
chr6.1 exon 15246087 15246941 15246087 ID=MS.gene67406.t1.exon1;Parent=MS.gene67406.t1
chr6.1 CDS 15246087 15246941 15246087 ID=cds.MS.gene67406.t1;Parent=MS.gene67406.t1
Gene Sequence

>MS.gene67406

ATGAGGTTCCAAATGGCCTCCATTACTCTTACTATTGCATTGACAATAATCTCTCTTAGCCTGCCATCCCAAACTTCAGCAAACAATTACGTCTATTCCTCTCCACCACCACCATCTAAGCCATACAAATACGCTTCCCCACCACCACCAGTTTACAAGTATAAATCACCACCCCCACCTGTCTACTCACCACCTCCACCTGTTTATAAATATAAGTCACCACCTCCACCAGTCTACTCACCACCTCCACCTGTTTACAAGTATAAGTCACCACCTCCACCTGTCTACTCACCACCTCCACCACTTTACAAGTACAAGTCCCCACCTCCACCCGTTTACTCACCACCTCCACCAGTTTACAAGTACAAGTCCCCACCTCCACCTGTCTACTCACCACCACCACCAGTTTACAAGTACAAGTCCCCTCCTCCACCCGTCTACTCACCACCTCCACCAGTTTACAAGTACAAGTCCCCTCCTCCACCCGTCTACTCACCACCTCCACCAGTTTACAAATACAAGTCCCCACCTCCACCCGTCTACTCTCCACCTCCCCCTGTTTACAAGTACAAGTCCCCACCTCCACCCGTCTACTCACCACCACCACCAGTTTACAGGTACAAGTCTCCTCCTCCACCTGTCTACTCACCACCTCCACCAGTTTACAAATACAAGTCCCCACCTCCACCCGTCTACTCACCAACTCCCCCAGTTTACAAGTACAAGTCACCTCCTCCTCCTGTCTATTCACCACCTCCACCAGTTTACAAGTATAAGTCTCCTCCTCCTCCTGCTTACTCACCACCTCCACCACATTATATCTACTCTTCACCACCTCCTCCTTACCATTACTAA
Protein sequence

>MS.gene67406.t1

MRFQMASITLTIALTIISLSLPSQTSANNYVYSSPPPPSKPYKYASPPPPVYKYKSPPPPVYSPPPPVYKYKSPPPPVYSPPPPVYKYKSPPPPVYSPPPPLYKYKSPPPPVYSPPPPVYKYKSPPPPVYSPPPPVYKYKSPPPPVYSPPPPVYKYKSPPPPVYSPPPPVYKYKSPPPPVYSPPPPVYKYKSPPPPVYSPPPPVYRYKSPPPPVYSPPPPVYKYKSPPPPVYSPTPPVYKYKSPPPPVYSPPPPVYKYKSPPPPAYSPPPPHYIYSSPPPPYHY