AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene050380


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050380.t1 MTR_5g010635 97.925 241 5 0 1 241 1 241 7.92e-178 488
MS.gene050380.t1 MTR_8g096900 63.348 221 78 2 6 225 30 248 1.68e-102 298
MS.gene050380.t1 MTR_5g010640 54.825 228 94 1 7 225 9 236 2.41e-90 266
MS.gene050380.t1 MTR_8g096910 46.018 226 71 4 1 225 1 176 6.37e-57 179
MS.gene050380.t1 MTR_8g096920 44.690 226 71 4 1 225 1 173 1.67e-55 176
MS.gene050380.t1 MTR_5g059200 47.511 221 96 8 19 224 24 239 1.09e-54 177
MS.gene050380.t1 MTR_1g021945 43.860 228 106 7 21 228 23 248 1.06e-52 171
MS.gene050380.t1 MTR_6g079580 42.083 240 115 8 6 225 5 240 1.20e-51 168
MS.gene050380.t1 MTR_4g073720 44.856 243 111 12 1 224 1 239 1.86e-50 168
MS.gene050380.t1 MTR_3g111620 43.636 220 102 8 26 225 29 246 5.72e-50 164
MS.gene050380.t1 MTR_8g075510 41.463 246 113 10 3 230 17 249 6.90e-50 164
MS.gene050380.t1 MTR_1g025420 39.271 247 125 8 1 224 1 245 1.82e-49 163
MS.gene050380.t1 MTR_1g025420 39.271 247 125 8 1 224 1 245 4.04e-49 164
MS.gene050380.t1 MTR_8g075510 41.667 240 109 10 3 224 17 243 4.84e-48 160
MS.gene050380.t1 MTR_8g107140 38.866 247 123 9 2 225 4 245 1.21e-47 158
MS.gene050380.t1 MTR_5g022350 40.078 257 120 14 3 239 14 256 2.68e-47 159
MS.gene050380.t1 MTR_5g022310 40.081 247 118 10 7 225 7 251 3.38e-47 157
MS.gene050380.t1 MTR_5g022310 40.081 247 118 10 7 225 7 251 4.41e-47 158
MS.gene050380.t1 MTR_8g037890 40.496 242 118 9 8 225 8 247 6.41e-47 158
MS.gene050380.t1 MTR_7g102380 41.423 239 116 10 9 225 5 241 1.05e-46 155
MS.gene050380.t1 MTR_2g067980 41.532 248 117 11 1 225 5 247 1.17e-46 166
MS.gene050380.t1 MTR_8g056820 39.506 243 121 9 7 225 7 247 1.24e-46 155
MS.gene050380.t1 MTR_3g114030 39.823 226 112 7 23 225 6 230 1.30e-46 155
MS.gene050380.t1 MTR_4g073730 39.200 250 120 9 1 226 8 249 1.60e-46 156
MS.gene050380.t1 MTR_4g073730 39.200 250 120 9 1 226 8 249 2.43e-46 157
MS.gene050380.t1 MTR_8g036215 38.174 241 125 9 4 224 1 237 4.69e-46 153
MS.gene050380.t1 MTR_2g069660 38.912 239 126 6 7 225 5 243 1.19e-45 152
MS.gene050380.t1 MTR_1g062590 38.525 244 126 9 4 225 1 242 5.65e-45 151
MS.gene050380.t1 MTR_1g062630 37.945 253 131 11 4 234 1 249 5.87e-45 151
MS.gene050380.t1 MTR_8g075550 40.175 229 108 8 23 224 27 253 1.14e-43 149
MS.gene050380.t1 MTR_2g068030 40.611 229 112 9 18 224 17 243 1.19e-43 148
MS.gene050380.t1 MTR_3g068015 41.553 219 105 9 28 225 32 248 2.68e-43 147
MS.gene050380.t1 MTR_1g062340 40.708 226 105 9 24 225 22 242 3.53e-43 146
MS.gene050380.t1 MTR_7g062610 37.652 247 127 9 1 225 1 242 1.98e-42 144
MS.gene050380.t1 MTR_1g062350 40.359 223 110 8 24 225 22 242 4.84e-41 140
MS.gene050380.t1 MTR_4g063630 37.447 235 121 9 14 224 19 251 7.10e-41 140
MS.gene050380.t1 MTR_2g068655 37.991 229 118 9 21 227 28 254 8.08e-41 142
MS.gene050380.t1 MTR_1g062370 39.910 223 111 8 24 225 22 242 9.42e-41 140
MS.gene050380.t1 MTR_6g009480 36.400 250 131 10 4 227 7 254 3.46e-40 139
MS.gene050380.t1 MTR_1g062660 38.462 234 121 8 13 225 11 242 6.43e-40 138
MS.gene050380.t1 MTR_2g067990 41.905 210 102 9 23 225 26 222 1.77e-35 134
MS.gene050380.t1 MTR_1g062690 35.294 221 100 8 24 225 22 218 7.46e-29 108
MS.gene050380.t1 MTR_2g067970 34.197 193 107 9 58 233 1 190 3.87e-23 98.2
MS.gene050380.t1 MTR_5g023850 33.333 168 97 5 9 161 11 178 7.54e-23 93.2
MS.gene050380.t1 MTR_8g089020 32.370 173 81 6 57 213 1 153 1.64e-21 87.8
MS.gene050380.t1 MTR_1g062390 27.848 237 150 8 6 225 6 238 4.76e-21 89.0
MS.gene050380.t1 MTR_5g022350 41.007 139 61 7 3 130 79 207 1.82e-20 86.7
MS.gene050380.t1 MTR_2g063150 28.326 233 144 10 1 213 10 239 5.52e-18 80.9
MS.gene050380.t1 MTR_7g076360 30.964 197 85 7 21 213 5 154 7.14e-18 78.6
MS.gene050380.t1 MTR_5g068670 50.000 64 30 2 68 130 25 87 1.74e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050380.t1 AT4G11650 73.778 225 57 2 1 225 1 223 1.59e-120 343
MS.gene050380.t1 AT1G75050 44.215 242 114 6 3 225 4 243 1.37e-58 186
MS.gene050380.t1 AT1G75040 42.623 244 116 7 1 225 1 239 1.05e-56 181
MS.gene050380.t1 AT1G75030 42.041 245 120 7 1 225 1 243 4.11e-54 174
MS.gene050380.t1 AT1G77700 43.590 234 112 7 6 224 43 271 1.32e-53 176
MS.gene050380.t1 AT1G77700 43.590 234 112 7 6 224 43 271 1.68e-53 175
MS.gene050380.t1 AT4G38660 45.798 238 109 10 5 225 11 245 9.39e-53 174
MS.gene050380.t1 AT1G77700 44.495 218 101 7 22 224 87 299 1.83e-52 174
MS.gene050380.t1 AT4G38670 39.754 244 122 9 6 225 5 247 3.62e-51 168
MS.gene050380.t1 AT4G38670 39.754 244 122 9 6 225 5 247 3.62e-51 168
MS.gene050380.t1 AT5G24620 41.434 251 114 10 3 225 6 251 5.08e-51 171
MS.gene050380.t1 AT5G24620 41.434 251 114 10 3 225 61 306 8.71e-51 172
MS.gene050380.t1 AT5G24620 41.434 251 114 10 3 225 82 327 1.12e-50 172
MS.gene050380.t1 AT1G19320 40.244 246 117 10 1 224 9 246 2.72e-49 162
MS.gene050380.t1 AT4G38660 45.778 225 102 10 18 225 2 223 3.56e-49 164
MS.gene050380.t1 AT1G73620 42.222 225 107 7 21 225 39 260 1.11e-48 161
MS.gene050380.t1 AT4G38670 40.789 228 110 9 22 225 5 231 4.71e-48 159
MS.gene050380.t1 AT1G75800 40.175 229 111 7 22 225 21 248 1.42e-47 160
MS.gene050380.t1 AT1G20030 40.708 226 108 7 25 225 4 228 2.12e-47 159
MS.gene050380.t1 AT1G18250 41.778 225 108 8 21 225 19 240 2.71e-47 157
MS.gene050380.t1 AT1G20030 40.708 226 108 7 25 225 21 245 3.52e-47 159
MS.gene050380.t1 AT1G18250 41.333 225 109 8 21 225 18 239 5.54e-47 156
MS.gene050380.t1 AT2G17860 40.083 242 116 9 11 225 10 249 1.55e-46 155
MS.gene050380.t1 AT4G36010 40.167 239 113 9 22 232 21 257 2.47e-45 154
MS.gene050380.t1 AT4G36010 40.167 239 113 9 22 232 21 257 2.47e-45 154
MS.gene050380.t1 AT4G24180 37.984 258 116 11 1 225 10 256 2.67e-43 147
MS.gene050380.t1 AT4G24180 37.984 258 116 11 1 225 10 256 1.28e-42 147
MS.gene050380.t1 AT4G24180 38.400 250 109 12 9 225 14 251 3.82e-42 144
MS.gene050380.t1 AT4G24180 38.400 250 109 12 9 225 14 251 1.14e-41 144
MS.gene050380.t1 AT5G38280 34.630 257 141 8 7 238 9 263 4.71e-40 146
MS.gene050380.t1 AT5G38280 34.630 257 141 8 7 238 9 263 5.98e-40 145
MS.gene050380.t1 AT5G02140 37.131 237 127 9 10 225 6 241 1.37e-37 133
MS.gene050380.t1 AT5G02140 37.131 237 127 9 10 225 6 241 1.96e-37 131
MS.gene050380.t1 AT1G70250 34.956 226 118 8 25 225 146 367 7.54e-37 137
MS.gene050380.t1 AT4G24180 36.777 242 110 10 1 209 10 241 7.66e-37 132
MS.gene050380.t1 AT5G40020 30.830 253 135 9 2 225 7 248 1.57e-36 129
MS.gene050380.t1 AT2G28790 35.146 239 127 10 13 224 11 248 5.75e-36 128
MS.gene050380.t1 AT2G28790 35.146 239 127 10 13 224 36 273 6.45e-36 128
MS.gene050380.t1 AT4G24180 37.179 234 103 11 9 209 14 236 8.98e-36 129
MS.gene050380.t1 AT4G36000 45.714 140 68 5 92 225 1 138 2.26e-33 120
MS.gene050380.t1 AT4G36000 45.714 140 68 5 92 225 1 138 2.26e-33 120
MS.gene050380.t1 AT4G18253 30.833 240 137 9 7 225 7 238 1.61e-24 98.2
MS.gene050380.t1 AT4G18250 31.301 246 151 8 1 230 34 277 1.09e-22 96.7
MS.gene050380.t1 AT5G24620 42.623 122 50 5 122 225 15 134 9.68e-20 86.3

Find 86 sgRNAs with CRISPR-Local

Find 91 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTGAGTCCTCAATTCTTT+AGG 0.199273 5.2:+3755754 None:intergenic
TACCGCCATGGCTCGTATTT+GGG 0.216063 5.2:-3756028 MS.gene050380:CDS
ATGGATTTCTTCCCTCTTAA+TGG 0.218122 5.2:-3755823 MS.gene050380:CDS
GTACCGCCATGGCTCGTATT+TGG 0.222625 5.2:-3756029 MS.gene050380:CDS
CTTGAGTCCTCAATTCTTTA+GGG 0.229087 5.2:+3755755 None:intergenic
AAGGAGTGAGGGTGAGTAGT+AGG 0.288125 5.2:+3756172 None:intergenic
AGAAATCTTGATTTCCGAAT+TGG 0.317167 5.2:+3755881 None:intergenic
ACAATTGCCCTTACACCGTT+TGG 0.330621 5.2:-3756122 MS.gene050380:CDS
AATGAATATTGTTGCACTAA+TGG 0.346009 5.2:-3755697 MS.gene050380:CDS
GCAGCTGCCCAAACGGTGTA+AGG 0.366048 5.2:+3756114 None:intergenic
GAATTGGTTTAACGCATATT+CGG 0.379434 5.2:+3755897 None:intergenic
GGTCGTGGCCGTTGCCAAAC+AGG 0.379579 5.2:-3755976 MS.gene050380:CDS
AACTTTGATGGCAGCGGTCG+TGG 0.386076 5.2:-3755991 MS.gene050380:CDS
TCGAGGCGGCGACCACCGCC+TGG 0.387324 5.2:+3756087 None:intergenic
TACACACTGGTCTGGTTTAG+TGG 0.389430 5.2:+3755511 None:intergenic
TGGACTCCAATGTACTGGTT+GGG 0.393400 5.2:-3755941 MS.gene050380:CDS
CGCACCGGTTGCAACTTTGA+TGG 0.400828 5.2:-3756003 MS.gene050380:CDS
GCATATTCGGCTAATGTGTT+TGG 0.402845 5.2:+3755910 None:intergenic
AGGGCACTGTCCGTTAATAT+CGG 0.417931 5.2:+3755774 None:intergenic
ATTAGTGCAACAATATTCAT+TGG 0.423057 5.2:+3755699 None:intergenic
AGTTGCACTGCCGATATTAA+CGG 0.432233 5.2:-3755784 MS.gene050380:CDS
CACCGGTGCAATCACCTGTT+TGG 0.438754 5.2:+3755962 None:intergenic
GTGGTCAAACATGGAACCTC+TGG 0.440064 5.2:-3756062 MS.gene050380:CDS
TGGGCTAGCAGCTGCCCAAA+CGG 0.440365 5.2:+3756107 None:intergenic
CAATTGCCCTTACACCGTTT+GGG 0.441211 5.2:-3756121 MS.gene050380:CDS
CATTTCAATACACACTGGTC+TGG 0.444048 5.2:+3755503 None:intergenic
AGTACTTTCACTTGTCCTGC+TGG 0.444797 5.2:-3755586 MS.gene050380:CDS
TTGTGGCATCCACCATTAAG+AGG 0.446706 5.2:+3755811 None:intergenic
AGGAGTGAGGGTGAGTAGTA+GGG 0.465064 5.2:+3756173 None:intergenic
GAATATGCGTTAAACCAATT+CGG 0.474473 5.2:-3755895 MS.gene050380:CDS
TATTCGGCTAATGTGTTTGG+TGG 0.475364 5.2:+3755913 None:intergenic
AAGTTGGTCCACAGCTTCCT+TGG 0.484859 5.2:+3755674 None:intergenic
TACTTGTTGGATCATCTTGA+GGG 0.496803 5.2:+3755605 None:intergenic
ATTGTTGACGATCTCAAAGT+TGG 0.500722 5.2:+3756140 None:intergenic
GCTGCCATCAAAGTTGCAAC+CGG 0.505235 5.2:+3755999 None:intergenic
ATACGAGCCATGGCGGTACC+AGG 0.507450 5.2:+3756033 None:intergenic
TCCATGTTTGACCACGGTCG+AGG 0.508565 5.2:+3756070 None:intergenic
GCAGCTGCTAGCCCAGGCGG+TGG 0.514788 5.2:-3756099 MS.gene050380:CDS
GTTTGGGCAGCTGCTAGCCC+AGG 0.516906 5.2:-3756105 MS.gene050380:CDS
TGCAATCACCTGTTTGGCAA+CGG 0.520534 5.2:+3755968 None:intergenic
GCCTCGACCGTGGTCAAACA+TGG 0.523130 5.2:-3756071 MS.gene050380:CDS
CGATGGTTTCAACATCCCAA+TGG 0.524206 5.2:-3755842 MS.gene050380:CDS
GTGGACTCCAATGTACTGGT+TGG 0.524692 5.2:-3755942 MS.gene050380:CDS
TACGACATCTCACTTGTCGA+TGG 0.528359 5.2:-3755859 MS.gene050380:CDS
GGACAAGTGAAAGTACTTGT+TGG 0.531593 5.2:+3755592 None:intergenic
GATTTCTTCCCTCTTAATGG+TGG 0.535456 5.2:-3755820 MS.gene050380:CDS
GTACTTGTTGGATCATCTTG+AGG 0.536813 5.2:+3755604 None:intergenic
GCTCGTATTTGGGGTCGCAC+CGG 0.540712 5.2:-3756018 MS.gene050380:CDS
TGGAACCTCTGGGTTAATCC+TGG 0.543119 5.2:-3756051 MS.gene050380:CDS
TCAAAGTTGGCTGCTTGTGA+AGG 0.547034 5.2:+3756153 None:intergenic
TTAAGAGGGAAGAAATCCAT+TGG 0.547257 5.2:+3755826 None:intergenic
GGACTCCAATGTACTGGTTG+GGG 0.549101 5.2:-3755940 MS.gene050380:CDS
TTTAGTGGCATCTCAATATG+AGG 0.552341 5.2:+3755526 None:intergenic
GTGGACCAACTTATTTCTCA+AGG 0.553636 5.2:-3755663 MS.gene050380:CDS
GGTTGCAACTTTGATGGCAG+CGG 0.554541 5.2:-3755997 MS.gene050380:CDS
TAAGAGGGAAGAAATCCATT+GGG 0.555277 5.2:+3755827 None:intergenic
CGAGGCGGCGACCACCGCCT+GGG 0.558748 5.2:+3756088 None:intergenic
ACCGGTGGACTCCAATGTAC+TGG 0.567872 5.2:-3755946 MS.gene050380:CDS
GGGAGCATAGTGTGAATGTG+AGG 0.572658 5.2:+3756193 None:intergenic
GGTTAATCCTGGTACCGCCA+TGG 0.575016 5.2:-3756040 MS.gene050380:CDS
TATTGTTGCACTAATGGCCA+AGG 0.575870 5.2:-3755691 MS.gene050380:CDS
CAGCTGCCCAAACGGTGTAA+GGG 0.577110 5.2:+3756115 None:intergenic
GGACACCCCAACCAGTACAT+TGG 0.577383 5.2:+3755935 None:intergenic
ACCGCCATGGCTCGTATTTG+GGG 0.579247 5.2:-3756027 MS.gene050380:CDS
CCTAAAGAATTGAGGACTCA+AGG 0.579944 5.2:-3755754 MS.gene050380:CDS
GACAGTGCCCTAAAGAATTG+AGG 0.582616 5.2:-3755762 MS.gene050380:CDS
GGTGGTCGCCGCCTCGACCG+TGG 0.586881 5.2:-3756081 MS.gene050380:CDS
TGCCAAACAGGTGATTGCAC+CGG 0.588418 5.2:-3755964 MS.gene050380:CDS
ATTCGGCTAATGTGTTTGGT+GGG 0.589352 5.2:+3755914 None:intergenic
TGGGCAGCTGCTAGCCCAGG+CGG 0.593879 5.2:-3756102 MS.gene050380:CDS
GCGACCCCAAATACGAGCCA+TGG 0.594263 5.2:+3756023 None:intergenic
ACCAGTACATTGGAGTCCAC+CGG 0.599388 5.2:+3755945 None:intergenic
TGTGGCATCCACCATTAAGA+GGG 0.600994 5.2:+3755812 None:intergenic
TGGCTGCTTGTGAAGGAGTG+AGG 0.609598 5.2:+3756160 None:intergenic
GGCTGCTTGTGAAGGAGTGA+GGG 0.609799 5.2:+3756161 None:intergenic
TGGTCAAACATGGAACCTCT+GGG 0.615184 5.2:-3756061 MS.gene050380:CDS
ACTTTGTAGTTAGATCCAGC+AGG 0.625794 5.2:+3755571 None:intergenic
CAAACAGGTGATTGCACCGG+TGG 0.628067 5.2:-3755961 MS.gene050380:CDS
ATGTTTGACCACGGTCGAGG+CGG 0.656759 5.2:+3756073 None:intergenic
AGAGGTTCCATGTTTGACCA+CGG 0.673146 5.2:+3756064 None:intergenic
ACTAATGGCCAAGGAAGCTG+TGG 0.677244 5.2:-3755682 MS.gene050380:CDS
ATACACATTTCAATACACAC+TGG 0.687621 5.2:+3755498 None:intergenic
ACCCCAAATACGAGCCATGG+CGG 0.699584 5.2:+3756026 None:intergenic
TCAATATGAGGAGCTCCAAG+AGG 0.715579 5.2:+3755538 None:intergenic
CGGTACCAGGATTAACCCAG+AGG 0.716660 5.2:+3756046 None:intergenic
AAAGAATTGAGGACTCAAGG+TGG 0.728458 5.2:-3755751 MS.gene050380:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTCTCAAGGTTTTTTA+AGG - chr5.2:3756064-3756083 MS.gene050380:CDS 20.0%
! AAAAACCTTGAGAAATAAGT+TGG + chr5.2:3756062-3756081 None:intergenic 25.0%
! AATGAATATTGTTGCACTAA+TGG - chr5.2:3756020-3756039 MS.gene050380:CDS 25.0%
! ATTAGTGCAACAATATTCAT+TGG + chr5.2:3756021-3756040 None:intergenic 25.0%
AGAAATCTTGATTTCCGAAT+TGG + chr5.2:3755839-3755858 None:intergenic 30.0%
GAATATGCGTTAAACCAATT+CGG - chr5.2:3755822-3755841 MS.gene050380:CDS 30.0%
! GAATTGGTTTAACGCATATT+CGG + chr5.2:3755823-3755842 None:intergenic 30.0%
! TGGTCTTAAAAACTGTACAA+GGG + chr5.2:3756001-3756020 None:intergenic 30.0%
!! TTGGTCTTAAAAACTGTACA+AGG + chr5.2:3756002-3756021 None:intergenic 30.0%
!!! TCTCAAGGTTTTTTAAGGAT+AGG - chr5.2:3756069-3756088 MS.gene050380:CDS 30.0%
ATGGATTTCTTCCCTCTTAA+TGG - chr5.2:3755894-3755913 MS.gene050380:CDS 35.0%
ATTGTTGACGATCTCAAAGT+TGG + chr5.2:3755580-3755599 None:intergenic 35.0%
CTTGAGTCCTCAATTCTTTA+GGG + chr5.2:3755965-3755984 None:intergenic 35.0%
TAAGAGGGAAGAAATCCATT+GGG + chr5.2:3755893-3755912 None:intergenic 35.0%
TTAAGAGGGAAGAAATCCAT+TGG + chr5.2:3755894-3755913 None:intergenic 35.0%
TTTAGTGGCATCTCAATATG+AGG + chr5.2:3756194-3756213 None:intergenic 35.0%
! TACTTGTTGGATCATCTTGA+GGG + chr5.2:3756115-3756134 None:intergenic 35.0%
!! AAAGTTGTTTTCTGTCCTCT+TGG - chr5.2:3756164-3756183 MS.gene050380:CDS 35.0%
AAAGAATTGAGGACTCAAGG+TGG - chr5.2:3755966-3755985 MS.gene050380:CDS 40.0%
ACTTTGTAGTTAGATCCAGC+AGG + chr5.2:3756149-3756168 None:intergenic 40.0%
AGTTGCACTGCCGATATTAA+CGG - chr5.2:3755933-3755952 MS.gene050380:CDS 40.0%
ATTCGGCTAATGTGTTTGGT+GGG + chr5.2:3755806-3755825 None:intergenic 40.0%
CCTAAAGAATTGAGGACTCA+AGG - chr5.2:3755963-3755982 MS.gene050380:CDS 40.0%
CCTTGAGTCCTCAATTCTTT+AGG + chr5.2:3755966-3755985 None:intergenic 40.0%
GATTTCTTCCCTCTTAATGG+TGG - chr5.2:3755897-3755916 MS.gene050380:CDS 40.0%
GCATATTCGGCTAATGTGTT+TGG + chr5.2:3755810-3755829 None:intergenic 40.0%
TATTCGGCTAATGTGTTTGG+TGG + chr5.2:3755807-3755826 None:intergenic 40.0%
TATTGTTGCACTAATGGCCA+AGG - chr5.2:3756026-3756045 MS.gene050380:CDS 40.0%
! GTACTTGTTGGATCATCTTG+AGG + chr5.2:3756116-3756135 None:intergenic 40.0%
! GTGGACCAACTTATTTCTCA+AGG - chr5.2:3756054-3756073 MS.gene050380:CDS 40.0%
!! GGACAAGTGAAAGTACTTGT+TGG + chr5.2:3756128-3756147 None:intergenic 40.0%
ACAATTGCCCTTACACCGTT+TGG - chr5.2:3755595-3755614 MS.gene050380:CDS 45.0%
AGAGGTTCCATGTTTGACCA+CGG + chr5.2:3755656-3755675 None:intergenic 45.0%
AGTACTTTCACTTGTCCTGC+TGG - chr5.2:3756131-3756150 MS.gene050380:CDS 45.0%
CAATTGCCCTTACACCGTTT+GGG - chr5.2:3755596-3755615 MS.gene050380:CDS 45.0%
CGATGGTTTCAACATCCCAA+TGG - chr5.2:3755875-3755894 MS.gene050380:CDS 45.0%
GACAGTGCCCTAAAGAATTG+AGG - chr5.2:3755955-3755974 MS.gene050380:CDS 45.0%
TACGACATCTCACTTGTCGA+TGG - chr5.2:3755858-3755877 MS.gene050380:CDS 45.0%
TCAAAGTTGGCTGCTTGTGA+AGG + chr5.2:3755567-3755586 None:intergenic 45.0%
TCAATATGAGGAGCTCCAAG+AGG + chr5.2:3756182-3756201 None:intergenic 45.0%
TGCAATCACCTGTTTGGCAA+CGG + chr5.2:3755752-3755771 None:intergenic 45.0%
TGGTCAAACATGGAACCTCT+GGG - chr5.2:3755656-3755675 MS.gene050380:CDS 45.0%
TGTGGCATCCACCATTAAGA+GGG + chr5.2:3755908-3755927 None:intergenic 45.0%
TTGTGGCATCCACCATTAAG+AGG + chr5.2:3755909-3755928 None:intergenic 45.0%
! TACACACTGGTCTGGTTTAG+TGG + chr5.2:3756209-3756228 None:intergenic 45.0%
!! AGGGCACTGTCCGTTAATAT+CGG + chr5.2:3755946-3755965 None:intergenic 45.0%
!! TGGACTCCAATGTACTGGTT+GGG - chr5.2:3755776-3755795 MS.gene050380:CDS 45.0%
AAGGAGTGAGGGTGAGTAGT+AGG + chr5.2:3755548-3755567 None:intergenic 50.0%
ACCAGTACATTGGAGTCCAC+CGG + chr5.2:3755775-3755794 None:intergenic 50.0%
ACTAATGGCCAAGGAAGCTG+TGG - chr5.2:3756035-3756054 MS.gene050380:CDS 50.0%
AGGAGTGAGGGTGAGTAGTA+GGG + chr5.2:3755547-3755566 None:intergenic 50.0%
GCTGCCATCAAAGTTGCAAC+CGG + chr5.2:3755721-3755740 None:intergenic 50.0%
GTGGTCAAACATGGAACCTC+TGG - chr5.2:3755655-3755674 MS.gene050380:CDS 50.0%
TACCGCCATGGCTCGTATTT+GGG - chr5.2:3755689-3755708 MS.gene050380:CDS 50.0%
TGCCAAACAGGTGATTGCAC+CGG - chr5.2:3755753-3755772 MS.gene050380:CDS 50.0%
TGGAACCTCTGGGTTAATCC+TGG - chr5.2:3755666-3755685 MS.gene050380:CDS 50.0%
! AAGTTGGTCCACAGCTTCCT+TGG + chr5.2:3756046-3756065 None:intergenic 50.0%
! GGGAGCATAGTGTGAATGTG+AGG + chr5.2:3755527-3755546 None:intergenic 50.0%
! GGTTGCAACTTTGATGGCAG+CGG - chr5.2:3755720-3755739 MS.gene050380:CDS 50.0%
! GTGGACTCCAATGTACTGGT+TGG - chr5.2:3755775-3755794 MS.gene050380:CDS 50.0%
!! CGGCAGTGCAACTGATTTTG+TGG + chr5.2:3755926-3755945 None:intergenic 50.0%
!! GGACTCCAATGTACTGGTTG+GGG - chr5.2:3755777-3755796 MS.gene050380:CDS 50.0%
ACCCCAAATACGAGCCATGG+CGG + chr5.2:3755694-3755713 None:intergenic 55.0%
ACCGCCATGGCTCGTATTTG+GGG - chr5.2:3755690-3755709 MS.gene050380:CDS 55.0%
ATGTTTGACCACGGTCGAGG+CGG + chr5.2:3755647-3755666 None:intergenic 55.0%
CAAACAGGTGATTGCACCGG+TGG - chr5.2:3755756-3755775 MS.gene050380:CDS 55.0%
CACCGGTGCAATCACCTGTT+TGG + chr5.2:3755758-3755777 None:intergenic 55.0%
CAGCTGCCCAAACGGTGTAA+GGG + chr5.2:3755605-3755624 None:intergenic 55.0%
CGGTACCAGGATTAACCCAG+AGG + chr5.2:3755674-3755693 None:intergenic 55.0%
GGACACCCCAACCAGTACAT+TGG + chr5.2:3755785-3755804 None:intergenic 55.0%
GGCTGCTTGTGAAGGAGTGA+GGG + chr5.2:3755559-3755578 None:intergenic 55.0%
GGTTAATCCTGGTACCGCCA+TGG - chr5.2:3755677-3755696 MS.gene050380:CDS 55.0%
GTACCGCCATGGCTCGTATT+TGG - chr5.2:3755688-3755707 MS.gene050380:CDS 55.0%
TCCATGTTTGACCACGGTCG+AGG + chr5.2:3755650-3755669 None:intergenic 55.0%
TGGCTGCTTGTGAAGGAGTG+AGG + chr5.2:3755560-3755579 None:intergenic 55.0%
! AACTTTGATGGCAGCGGTCG+TGG - chr5.2:3755726-3755745 MS.gene050380:CDS 55.0%
! ACCGGTGGACTCCAATGTAC+TGG - chr5.2:3755771-3755790 MS.gene050380:CDS 55.0%
!! CGCACCGGTTGCAACTTTGA+TGG - chr5.2:3755714-3755733 MS.gene050380:CDS 55.0%
ATACGAGCCATGGCGGTACC+AGG + chr5.2:3755687-3755706 None:intergenic 60.0%
GCAGCTGCCCAAACGGTGTA+AGG + chr5.2:3755606-3755625 None:intergenic 60.0%
GCCTCGACCGTGGTCAAACA+TGG - chr5.2:3755646-3755665 MS.gene050380:CDS 60.0%
GCGACCCCAAATACGAGCCA+TGG + chr5.2:3755697-3755716 None:intergenic 60.0%
! GCTCGTATTTGGGGTCGCAC+CGG - chr5.2:3755699-3755718 MS.gene050380:CDS 60.0%
!! TGGGCTAGCAGCTGCCCAAA+CGG + chr5.2:3755613-3755632 None:intergenic 60.0%
GGTCGTGGCCGTTGCCAAAC+AGG - chr5.2:3755741-3755760 MS.gene050380:CDS 65.0%
GTTTGGGCAGCTGCTAGCCC+AGG - chr5.2:3755612-3755631 MS.gene050380:CDS 65.0%
TGGGCAGCTGCTAGCCCAGG+CGG - chr5.2:3755615-3755634 MS.gene050380:CDS 70.0%
GCAGCTGCTAGCCCAGGCGG+TGG - chr5.2:3755618-3755637 MS.gene050380:CDS 75.0%
! CGAGGCGGCGACCACCGCCT+GGG + chr5.2:3755632-3755651 None:intergenic 80.0%
! GGTGGTCGCCGCCTCGACCG+TGG - chr5.2:3755636-3755655 MS.gene050380:CDS 80.0%
! TCGAGGCGGCGACCACCGCC+TGG + chr5.2:3755633-3755652 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 3755507 3756232 3755507 ID=MS.gene050380
chr5.2 mRNA 3755507 3756232 3755507 ID=MS.gene050380.t1;Parent=MS.gene050380
chr5.2 exon 3755507 3756232 3755507 ID=MS.gene050380.t1.exon1;Parent=MS.gene050380.t1
chr5.2 CDS 3755507 3756232 3755507 ID=cds.MS.gene050380.t1;Parent=MS.gene050380.t1
Gene Sequence

>MS.gene050380

ATGACTTTCATATCAATCCTCACATTCACACTATGCTCCCTACTACTCACCCTCACTCCTTCACAAGCAGCCAACTTTGAGATCGTCAACAATTGCCCTTACACCGTTTGGGCAGCTGCTAGCCCAGGCGGTGGTCGCCGCCTCGACCGTGGTCAAACATGGAACCTCTGGGTTAATCCTGGTACCGCCATGGCTCGTATTTGGGGTCGCACCGGTTGCAACTTTGATGGCAGCGGTCGTGGCCGTTGCCAAACAGGTGATTGCACCGGTGGACTCCAATGTACTGGTTGGGGTGTCCCACCAAACACATTAGCCGAATATGCGTTAAACCAATTCGGAAATCAAGATTTCTACGACATCTCACTTGTCGATGGTTTCAACATCCCAATGGATTTCTTCCCTCTTAATGGTGGATGCCACAAAATCAGTTGCACTGCCGATATTAACGGACAGTGCCCTAAAGAATTGAGGACTCAAGGTGGTTGTAACAACCCTTGTACAGTTTTTAAGACCAATGAATATTGTTGCACTAATGGCCAAGGAAGCTGTGGACCAACTTATTTCTCAAGGTTTTTTAAGGATAGGTGTCATGATTCATACAGTTACCCTCAAGATGATCCAACAAGTACTTTCACTTGTCCTGCTGGATCTAACTACAAAGTTGTTTTCTGTCCTCTTGGAGCTCCTCATATTGAGATGCCACTAAACCAGACCAGTGTGTATTGA

Protein sequence

>MS.gene050380.t1

MTFISILTFTLCSLLLTLTPSQAANFEIVNNCPYTVWAAASPGGGRRLDRGQTWNLWVNPGTAMARIWGRTGCNFDGSGRGRCQTGDCTGGLQCTGWGVPPNTLAEYALNQFGNQDFYDISLVDGFNIPMDFFPLNGGCHKISCTADINGQCPKELRTQGGCNNPCTVFKTNEYCCTNGQGSCGPTYFSRFFKDRCHDSYSYPQDDPTSTFTCPAGSNYKVVFCPLGAPHIEMPLNQTSVY