Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene67442.t1 | XP_003600988.1 | 97 | 231 | 7 | 0 | 1 | 231 | 1 | 231 | 1.90E-123 | 451.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene67442.t1 | O80920 | 68.0 | 181 | 51 | 1 | 51 | 231 | 31 | 204 | 9.3e-63 | 241.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene67442.t1 | G7J2D4 | 97.0 | 231 | 7 | 0 | 1 | 231 | 1 | 231 | 1.4e-123 | 451.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene052795 | MS.gene67442 | 0.811027 | 8.60E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene67442.t1 | MTR_3g071740 | 97.845 | 232 | 4 | 1 | 1 | 231 | 1 | 232 | 1.55e-167 | 461 |
MS.gene67442.t1 | MTR_5g083270 | 62.500 | 224 | 63 | 5 | 1 | 223 | 1 | 204 | 3.09e-87 | 257 |
MS.gene67442.t1 | MTR_7g070050 | 65.027 | 183 | 55 | 3 | 57 | 231 | 4 | 185 | 1.05e-71 | 217 |
MS.gene67442.t1 | MTR_4g014460 | 63.804 | 163 | 55 | 2 | 64 | 223 | 47 | 208 | 1.16e-69 | 213 |
MS.gene67442.t1 | MTR_5g030500 | 53.939 | 165 | 70 | 2 | 69 | 227 | 47 | 211 | 7.08e-62 | 193 |
MS.gene67442.t1 | MTR_1g016480 | 58.333 | 156 | 57 | 3 | 72 | 221 | 43 | 196 | 2.08e-59 | 186 |
MS.gene67442.t1 | MTR_3g090980 | 53.374 | 163 | 71 | 4 | 63 | 222 | 18 | 178 | 2.93e-58 | 183 |
MS.gene67442.t1 | MTR_1g028380 | 51.136 | 176 | 79 | 5 | 52 | 222 | 3 | 176 | 3.45e-58 | 182 |
MS.gene67442.t1 | MTR_8g027805 | 54.777 | 157 | 66 | 3 | 69 | 222 | 21 | 175 | 5.94e-58 | 182 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene67442.t1 | AT2G40330 | 64.407 | 177 | 58 | 1 | 53 | 224 | 35 | 211 | 1.28e-78 | 235 |
MS.gene67442.t1 | AT5G05440 | 66.460 | 161 | 54 | 0 | 59 | 219 | 38 | 198 | 1.28e-75 | 227 |
MS.gene67442.t1 | AT2G38310 | 71.257 | 167 | 48 | 0 | 65 | 231 | 38 | 204 | 4.12e-74 | 224 |
MS.gene67442.t1 | AT1G01360 | 52.381 | 168 | 75 | 3 | 58 | 222 | 13 | 178 | 5.46e-59 | 184 |
MS.gene67442.t1 | AT5G53160 | 55.414 | 157 | 65 | 4 | 69 | 222 | 22 | 176 | 1.67e-58 | 183 |
MS.gene67442.t1 | AT4G27920 | 54.777 | 157 | 67 | 3 | 69 | 222 | 17 | 172 | 2.63e-58 | 182 |
MS.gene67442.t1 | AT2G26040 | 51.765 | 170 | 76 | 3 | 66 | 230 | 22 | 190 | 2.53e-57 | 180 |
MS.gene67442.t1 | AT4G17870 | 48.824 | 170 | 84 | 1 | 64 | 230 | 15 | 184 | 1.70e-56 | 178 |
MS.gene67442.t1 | AT4G01026 | 50.000 | 168 | 79 | 3 | 58 | 222 | 15 | 180 | 4.71e-56 | 178 |
MS.gene67442.t1 | AT1G73000 | 49.091 | 165 | 72 | 3 | 69 | 221 | 40 | 204 | 5.24e-51 | 165 |
MS.gene67442.t1 | AT5G46790 | 47.753 | 178 | 87 | 1 | 51 | 222 | 29 | 206 | 4.51e-47 | 155 |
MS.gene67442.t1 | AT5G46790 | 47.753 | 178 | 87 | 1 | 51 | 222 | 29 | 206 | 4.51e-47 | 155 |
MS.gene67442.t1 | AT5G45860 | 56.849 | 146 | 60 | 2 | 79 | 222 | 10 | 154 | 1.39e-45 | 149 |
MS.gene67442.t1 | AT5G45870 | 54.362 | 149 | 66 | 2 | 79 | 226 | 10 | 157 | 8.53e-45 | 147 |
MS.gene67442.t1 | AT4G18620 | 46.835 | 158 | 76 | 2 | 77 | 226 | 7 | 164 | 5.15e-37 | 127 |
MS.gene67442.t1 | AT5G53160 | 54.545 | 99 | 43 | 2 | 69 | 167 | 22 | 118 | 8.98e-33 | 116 |
Find 64 sgRNAs with CRISPR-Local
Find 68 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CGTGAAGTTCGTGTTGTTTC+AGG | 0.146453 | 3.1:-58636263 | MS.gene67442:CDS |
GAAGATAAAGATGGTGGAAA+TGG | 0.328183 | 3.1:+58636503 | None:intergenic |
GGTGGTGTTTGTGGTTGTCT+AGG | 0.342795 | 3.1:+58636554 | None:intergenic |
ACAGGCCATACGGCGGAGAT+AGG | 0.366876 | 3.1:+58636377 | None:intergenic |
ACCACAAACACCACCACCCA+CGG | 0.385777 | 3.1:-58636546 | MS.gene67442:CDS |
TAAGTGGTTGCATCAGTTGT+AGG | 0.402894 | 3.1:+58636605 | None:intergenic |
TTCATTCACTCGACGGAGAT+AGG | 0.405446 | 3.1:-58636121 | MS.gene67442:CDS |
CTTTCAGTGCTTGACTCAGC+TGG | 0.432971 | 3.1:+58636236 | None:intergenic |
CGACGCGCCGCCGTGGGTGG+TGG | 0.441588 | 3.1:+58636536 | None:intergenic |
ACGACGGAGCAGCACTGGTT+TGG | 0.446028 | 3.1:+58636419 | None:intergenic |
GTGGTGTTTGTGGTTGTCTA+GGG | 0.450968 | 3.1:+58636555 | None:intergenic |
GTCATCAGCTTCAGTGTTGT+TGG | 0.454648 | 3.1:-58636185 | MS.gene67442:CDS |
AAGATAAAGATGGTGGAAAT+GGG | 0.456358 | 3.1:+58636504 | None:intergenic |
TCAGCTTCAGTGTTGTTGGT+GGG | 0.460835 | 3.1:-58636181 | MS.gene67442:CDS |
CGTTGTAATTTACAGTCGTT+GGG | 0.475281 | 3.1:-58636014 | MS.gene67442:CDS |
GAGATAACGTGTCTAGGACT+AGG | 0.483808 | 3.1:+58636465 | None:intergenic |
ACGTTGTAATTTACAGTCGT+TGG | 0.493660 | 3.1:-58636015 | MS.gene67442:CDS |
TGAGTCAAGCACTGAAAGGC+TGG | 0.494711 | 3.1:-58636231 | MS.gene67442:CDS |
GTGTGACGACGGAGCAGCAC+TGG | 0.495331 | 3.1:+58636414 | None:intergenic |
GGCGGAGATAGGGGCGGAGA+TGG | 0.499951 | 3.1:+58636388 | None:intergenic |
CAGGCCATACGGCGGAGATA+GGG | 0.510475 | 3.1:+58636378 | None:intergenic |
GTTTGCTATGGCTAAGTAAG+TGG | 0.511458 | 3.1:+58636589 | None:intergenic |
TAGGACTAGGGTTCCTCCGT+TGG | 0.513644 | 3.1:+58636478 | None:intergenic |
ATCAGCTTCAGTGTTGTTGG+TGG | 0.514963 | 3.1:-58636182 | MS.gene67442:CDS |
AAGTGGTTGCATCAGTTGTA+GGG | 0.519210 | 3.1:+58636606 | None:intergenic |
GCAGTTTGCACCGTTTGCTA+TGG | 0.520707 | 3.1:+58636577 | None:intergenic |
GTTCCTTCATGATTATTGCT+CGG | 0.532104 | 3.1:+58635959 | None:intergenic |
AACTAAACGACGCGCCGCCG+TGG | 0.533995 | 3.1:+58636529 | None:intergenic |
CAGCTTCAGTGTTGTTGGTG+GGG | 0.536200 | 3.1:-58636180 | MS.gene67442:CDS |
AGATAACGTGTCTAGGACTA+GGG | 0.537277 | 3.1:+58636466 | None:intergenic |
AGGCCATACGGCGGAGATAG+GGG | 0.537578 | 3.1:+58636379 | None:intergenic |
AAAAGCTGCCATGTCATCAC+CGG | 0.551768 | 3.1:-58636311 | MS.gene67442:CDS |
CCATCTTTATCTTCTTCCAA+CGG | 0.556960 | 3.1:-58636494 | MS.gene67442:CDS |
CCGCCCCTATCTCCGCCGTA+TGG | 0.564976 | 3.1:-58636382 | MS.gene67442:CDS |
CTTCACCACGCACACATGGT+TGG | 0.565295 | 3.1:-58636443 | MS.gene67442:CDS |
AACTTCACGAACAGCGCCGA+CGG | 0.566383 | 3.1:+58636277 | None:intergenic |
GCGTCGAACTACAGGCCATA+CGG | 0.566857 | 3.1:+58636367 | None:intergenic |
CAGCTGAGTCAAGCACTGAA+AGG | 0.571420 | 3.1:-58636235 | MS.gene67442:CDS |
GGTGAAGAGATAACGTGTCT+AGG | 0.573419 | 3.1:+58636459 | None:intergenic |
AATGAAGCGTCGTCACCGAC+CGG | 0.581297 | 3.1:+58636138 | None:intergenic |
GCCGTGGGTGGTGGTGTTTG+TGG | 0.587797 | 3.1:+58636545 | None:intergenic |
ATCTCTTCACCACGCACACA+TGG | 0.590375 | 3.1:-58636447 | MS.gene67442:CDS |
ACTTACTTAGCCATAGCAAA+CGG | 0.594361 | 3.1:-58636587 | MS.gene67442:CDS |
ACTAAACGACGCGCCGCCGT+GGG | 0.595821 | 3.1:+58636530 | None:intergenic |
TCCTCCTTCGTGTTACCTTG+CGG | 0.597704 | 3.1:+58636065 | None:intergenic |
AAACGACGCGCCGCCGTGGG+TGG | 0.603918 | 3.1:+58636533 | None:intergenic |
ACCGGTAGTTTCTCAGACGG+TGG | 0.613294 | 3.1:+58636156 | None:intergenic |
TTGGAAGAAGATAAAGATGG+TGG | 0.620854 | 3.1:+58636497 | None:intergenic |
TCTTTATCTTCTTCCAACGG+AGG | 0.632116 | 3.1:-58636491 | MS.gene67442:CDS |
CCATACGGCGGAGATAGGGG+CGG | 0.649626 | 3.1:+58636382 | None:intergenic |
ACCGGAGAAAACATCACCGT+CGG | 0.653865 | 3.1:-58636293 | MS.gene67442:CDS |
TACGTCGTTGACGTACCGCA+AGG | 0.658251 | 3.1:-58636080 | MS.gene67442:CDS |
TTGGTCCAACCATGTGTGCG+TGG | 0.662505 | 3.1:+58636438 | None:intergenic |
CCGTTGGAAGAAGATAAAGA+TGG | 0.665346 | 3.1:+58636494 | None:intergenic |
ACCGCAAGGTAACACGAAGG+AGG | 0.666880 | 3.1:-58636066 | MS.gene67442:CDS |
ACCACCGTCTGAGAAACTAC+CGG | 0.679568 | 3.1:-58636157 | MS.gene67442:CDS |
CGACGCTTCGAAAATCCACA+AGG | 0.680557 | 3.1:-58636350 | MS.gene67442:CDS |
ACAAACACCACCACCCACGG+CGG | 0.682673 | 3.1:-58636543 | MS.gene67442:CDS |
ACGACGCTTCATTCACTCGA+CGG | 0.685079 | 3.1:-58636128 | MS.gene67442:CDS |
GGAGATGGTTTGTGTGACGA+CGG | 0.685568 | 3.1:+58636403 | None:intergenic |
CCGACCGGTAGTTTCTCAGA+CGG | 0.717412 | 3.1:+58636153 | None:intergenic |
TCGAACTACAGGCCATACGG+CGG | 0.723216 | 3.1:+58636370 | None:intergenic |
CCGTCTGAGAAACTACCGGT+CGG | 0.737535 | 3.1:-58636153 | MS.gene67442:CDS |
CGTACCGCAAGGTAACACGA+AGG | 0.792249 | 3.1:-58636069 | MS.gene67442:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAGATAAAGATGGTGGAAAT+GGG | + | chr3.1:58636114-58636133 | None:intergenic | 30.0% |
ACGTTGTAATTTACAGTCGT+TGG | - | chr3.1:58636600-58636619 | MS.gene67442:CDS | 35.0% | |
ACTTACTTAGCCATAGCAAA+CGG | - | chr3.1:58636028-58636047 | MS.gene67442:CDS | 35.0% | |
AGCTGAAGAGAAAAACTTGA+TGG | + | chr3.1:58635977-58635996 | None:intergenic | 35.0% | |
CCATCTTTATCTTCTTCCAA+CGG | - | chr3.1:58636121-58636140 | MS.gene67442:CDS | 35.0% | |
CGTTGTAATTTACAGTCGTT+GGG | - | chr3.1:58636601-58636620 | MS.gene67442:CDS | 35.0% | |
TTGGAAGAAGATAAAGATGG+TGG | + | chr3.1:58636121-58636140 | None:intergenic | 35.0% | |
! | ACGAAGTTTTTGTATCCTTG+TGG | + | chr3.1:58636283-58636302 | None:intergenic | 35.0% |
!! | GAAGATAAAGATGGTGGAAA+TGG | + | chr3.1:58636115-58636134 | None:intergenic | 35.0% |
AAGTGGTTGCATCAGTTGTA+GGG | + | chr3.1:58636012-58636031 | None:intergenic | 40.0% | |
CCGTTGGAAGAAGATAAAGA+TGG | + | chr3.1:58636124-58636143 | None:intergenic | 40.0% | |
TAAGTGGTTGCATCAGTTGT+AGG | + | chr3.1:58636013-58636032 | None:intergenic | 40.0% | |
TCTTTATCTTCTTCCAACGG+AGG | - | chr3.1:58636124-58636143 | MS.gene67442:CDS | 40.0% | |
! | AGATAACGTGTCTAGGACTA+GGG | + | chr3.1:58636152-58636171 | None:intergenic | 40.0% |
!! | GTTTGCTATGGCTAAGTAAG+TGG | + | chr3.1:58636029-58636048 | None:intergenic | 40.0% |
AAAAGCTGCCATGTCATCAC+CGG | - | chr3.1:58636304-58636323 | MS.gene67442:CDS | 45.0% | |
GGTGAAGAGATAACGTGTCT+AGG | + | chr3.1:58636159-58636178 | None:intergenic | 45.0% | |
GTCATCAGCTTCAGTGTTGT+TGG | - | chr3.1:58636430-58636449 | MS.gene67442:CDS | 45.0% | |
GTGGTGTTTGTGGTTGTCTA+GGG | + | chr3.1:58636063-58636082 | None:intergenic | 45.0% | |
TTCATTCACTCGACGGAGAT+AGG | - | chr3.1:58636494-58636513 | MS.gene67442:CDS | 45.0% | |
! | ATCAGCTTCAGTGTTGTTGG+TGG | - | chr3.1:58636433-58636452 | MS.gene67442:CDS | 45.0% |
! | GAGATAACGTGTCTAGGACT+AGG | + | chr3.1:58636153-58636172 | None:intergenic | 45.0% |
! | TCAGCTTCAGTGTTGTTGGT+GGG | - | chr3.1:58636434-58636453 | MS.gene67442:CDS | 45.0% |
! | TGTTTTCTCCGGTGATGACA+TGG | + | chr3.1:58636315-58636334 | None:intergenic | 45.0% |
!! | CGTGAAGTTCGTGTTGTTTC+AGG | - | chr3.1:58636352-58636371 | MS.gene67442:CDS | 45.0% |
!!! | TTTTCGAAGCGTCGAACTAC+AGG | + | chr3.1:58636259-58636278 | None:intergenic | 45.0% |
ACCACCGTCTGAGAAACTAC+CGG | - | chr3.1:58636458-58636477 | MS.gene67442:CDS | 50.0% | |
ACCGGAGAAAACATCACCGT+CGG | - | chr3.1:58636322-58636341 | MS.gene67442:CDS | 50.0% | |
ACGACGCTTCATTCACTCGA+CGG | - | chr3.1:58636487-58636506 | MS.gene67442:CDS | 50.0% | |
ATCTCTTCACCACGCACACA+TGG | - | chr3.1:58636168-58636187 | MS.gene67442:CDS | 50.0% | |
CGACGCTTCGAAAATCCACA+AGG | - | chr3.1:58636265-58636284 | MS.gene67442:CDS | 50.0% | |
CTTTCAGTGCTTGACTCAGC+TGG | + | chr3.1:58636382-58636401 | None:intergenic | 50.0% | |
GGTGGTGTTTGTGGTTGTCT+AGG | + | chr3.1:58636064-58636083 | None:intergenic | 50.0% | |
TCCTCCTTCGTGTTACCTTG+CGG | + | chr3.1:58636553-58636572 | None:intergenic | 50.0% | |
! | CAGCTTCAGTGTTGTTGGTG+GGG | - | chr3.1:58636435-58636454 | MS.gene67442:CDS | 50.0% |
! | GCAGTTTGCACCGTTTGCTA+TGG | + | chr3.1:58636041-58636060 | None:intergenic | 50.0% |
! | GGAGATGGTTTGTGTGACGA+CGG | + | chr3.1:58636215-58636234 | None:intergenic | 50.0% |
!! | CAGCTGAGTCAAGCACTGAA+AGG | - | chr3.1:58636380-58636399 | MS.gene67442:CDS | 50.0% |
!! | TGAGTCAAGCACTGAAAGGC+TGG | - | chr3.1:58636384-58636403 | MS.gene67442:CDS | 50.0% |
ACCACAAACACCACCACCCA+CGG | - | chr3.1:58636069-58636088 | MS.gene67442:CDS | 55.0% | |
ACCGCAAGGTAACACGAAGG+AGG | - | chr3.1:58636549-58636568 | MS.gene67442:CDS | 55.0% | |
ACCGGTAGTTTCTCAGACGG+TGG | + | chr3.1:58636462-58636481 | None:intergenic | 55.0% | |
CCGACCGGTAGTTTCTCAGA+CGG | + | chr3.1:58636465-58636484 | None:intergenic | 55.0% | |
CCGTCTGAGAAACTACCGGT+CGG | - | chr3.1:58636462-58636481 | MS.gene67442:CDS | 55.0% | |
CGTACCGCAAGGTAACACGA+AGG | - | chr3.1:58636546-58636565 | MS.gene67442:CDS | 55.0% | |
CTTCACCACGCACACATGGT+TGG | - | chr3.1:58636172-58636191 | MS.gene67442:CDS | 55.0% | |
GCGTCGAACTACAGGCCATA+CGG | + | chr3.1:58636251-58636270 | None:intergenic | 55.0% | |
TACGTCGTTGACGTACCGCA+AGG | - | chr3.1:58636535-58636554 | MS.gene67442:CDS | 55.0% | |
TAGGACTAGGGTTCCTCCGT+TGG | + | chr3.1:58636140-58636159 | None:intergenic | 55.0% | |
TCGAACTACAGGCCATACGG+CGG | + | chr3.1:58636248-58636267 | None:intergenic | 55.0% | |
TTGGTCCAACCATGTGTGCG+TGG | + | chr3.1:58636180-58636199 | None:intergenic | 55.0% | |
! | AACTTCACGAACAGCGCCGA+CGG | + | chr3.1:58636341-58636360 | None:intergenic | 55.0% |
! | GCCGACGGTGATGTTTTCTC+CGG | + | chr3.1:58636326-58636345 | None:intergenic | 55.0% |
!! | AATGAAGCGTCGTCACCGAC+CGG | + | chr3.1:58636480-58636499 | None:intergenic | 55.0% |
ACAAACACCACCACCCACGG+CGG | - | chr3.1:58636072-58636091 | MS.gene67442:CDS | 60.0% | |
ACAGGCCATACGGCGGAGAT+AGG | + | chr3.1:58636241-58636260 | None:intergenic | 60.0% | |
AGGCCATACGGCGGAGATAG+GGG | + | chr3.1:58636239-58636258 | None:intergenic | 60.0% | |
CAGGCCATACGGCGGAGATA+GGG | + | chr3.1:58636240-58636259 | None:intergenic | 60.0% | |
!! | ACGACGGAGCAGCACTGGTT+TGG | + | chr3.1:58636199-58636218 | None:intergenic | 60.0% |
AACTAAACGACGCGCCGCCG+TGG | + | chr3.1:58636089-58636108 | None:intergenic | 65.0% | |
ACTAAACGACGCGCCGCCGT+GGG | + | chr3.1:58636088-58636107 | None:intergenic | 65.0% | |
CCATACGGCGGAGATAGGGG+CGG | + | chr3.1:58636236-58636255 | None:intergenic | 65.0% | |
GTGTGACGACGGAGCAGCAC+TGG | + | chr3.1:58636204-58636223 | None:intergenic | 65.0% | |
! | GCCGTGGGTGGTGGTGTTTG+TGG | + | chr3.1:58636073-58636092 | None:intergenic | 65.0% |
CCGCCCCTATCTCCGCCGTA+TGG | - | chr3.1:58636233-58636252 | MS.gene67442:CDS | 70.0% | |
GGCGGAGATAGGGGCGGAGA+TGG | + | chr3.1:58636230-58636249 | None:intergenic | 70.0% | |
AAACGACGCGCCGCCGTGGG+TGG | + | chr3.1:58636085-58636104 | None:intergenic | 75.0% | |
! | CGACGCGCCGCCGTGGGTGG+TGG | + | chr3.1:58636082-58636101 | None:intergenic | 85.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.1 | gene | 58635971 | 58636666 | 58635971 | ID=MS.gene67442 |
chr3.1 | mRNA | 58635971 | 58636666 | 58635971 | ID=MS.gene67442.t1;Parent=MS.gene67442 |
chr3.1 | exon | 58635971 | 58636666 | 58635971 | ID=MS.gene67442.t1.exon1;Parent=MS.gene67442.t1 |
chr3.1 | CDS | 58635971 | 58636666 | 58635971 | ID=cds.MS.gene67442.t1;Parent=MS.gene67442.t1 |
Gene Sequence |
Protein sequence |