AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene67694

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene67694.t1 MTR_5g022870 97.152 316 9 0 1 316 1 316 0.0 635
MS.gene67694.t1 MTR_8g075100 78.333 300 65 0 17 316 20 319 0.0 505
MS.gene67694.t1 MTR_1g025980 69.256 309 94 1 8 315 9 317 6.40e-157 441
MS.gene67694.t1 MTR_1g101830 56.230 313 134 2 7 316 10 322 1.43e-125 362
MS.gene67694.t1 MTR_1g077000 45.370 324 158 4 3 316 13 327 2.93e-99 295
MS.gene67694.t1 MTR_0155s0040 44.136 324 164 4 1 316 1 315 6.78e-92 276
MS.gene67694.t1 MTR_7g107520 46.057 317 153 8 10 316 12 320 7.48e-90 271
MS.gene67694.t1 MTR_3g092990 45.768 319 164 5 6 316 9 326 4.27e-89 269
MS.gene67694.t1 MTR_4g046713 46.226 318 159 6 8 316 12 326 1.21e-88 268
MS.gene67694.t1 MTR_2g088770 46.562 320 157 8 7 316 10 325 3.02e-87 265
MS.gene67694.t1 MTR_2g008710 42.492 313 170 3 10 315 11 320 2.62e-85 259
MS.gene67694.t1 MTR_1g086320 44.688 320 164 9 10 316 14 333 2.23e-80 247
MS.gene67694.t1 MTR_5g017850 41.875 320 178 5 3 316 9 326 5.16e-80 246
MS.gene67694.t1 MTR_2g029815 41.390 331 172 9 2 316 6 330 8.11e-79 244
MS.gene67694.t1 MTR_4g122640 40.828 338 176 7 1 316 1 336 1.21e-78 243
MS.gene67694.t1 MTR_5g017860 41.801 311 175 4 12 316 16 326 1.33e-78 243
MS.gene67694.t1 MTR_7g086820 43.189 301 156 6 23 316 20 312 1.47e-78 242
MS.gene67694.t1 MTR_5g021060 43.750 304 164 5 20 316 27 330 3.57e-78 241
MS.gene67694.t1 MTR_1g054205 40.683 322 177 10 5 316 9 326 4.71e-78 241
MS.gene67694.t1 MTR_1g086490 43.027 337 171 10 1 316 4 340 1.14e-77 241
MS.gene67694.t1 MTR_2g040000 42.462 325 169 9 4 316 13 331 1.66e-77 240
MS.gene67694.t1 MTR_7g029030 40.867 323 176 9 3 316 4 320 5.13e-77 238
MS.gene67694.t1 MTR_4g114210 40.491 326 178 7 1 316 1 320 8.45e-77 238
MS.gene67694.t1 MTR_7g093370 41.009 317 175 9 11 316 56 371 1.84e-76 239
MS.gene67694.t1 MTR_2g028980 40.798 326 180 9 3 316 6 330 2.02e-76 238
MS.gene67694.t1 MTR_2g029560 41.447 304 166 7 23 316 24 325 4.50e-76 237
MS.gene67694.t1 MTR_2g029820 39.877 326 184 8 2 316 6 330 4.55e-76 237
MS.gene67694.t1 MTR_3g466200 40.498 321 174 8 6 316 7 320 7.69e-76 235
MS.gene67694.t1 MTR_3g092990 42.947 319 162 6 6 316 9 315 1.05e-75 235
MS.gene67694.t1 MTR_5g016010 40.615 325 178 7 3 315 7 328 2.80e-75 234
MS.gene67694.t1 MTR_3g094650 39.692 325 173 7 4 316 9 322 4.06e-75 233
MS.gene67694.t1 MTR_2g029860 39.628 323 183 8 5 316 9 330 4.19e-75 234
MS.gene67694.t1 MTR_2g084110 39.198 324 182 5 1 316 1 317 6.33e-75 233
MS.gene67694.t1 MTR_4g029170 41.066 319 172 8 7 316 10 321 8.86e-75 233
MS.gene67694.t1 MTR_1g038680 43.709 302 160 7 25 316 31 332 1.02e-74 233
MS.gene67694.t1 MTR_5g049280 39.818 329 179 8 6 316 10 337 1.34e-74 233
MS.gene67694.t1 MTR_2g029830 40.584 308 173 7 18 316 23 329 1.89e-74 233
MS.gene67694.t1 MTR_3g072190 41.441 333 163 9 1 316 1 318 2.58e-74 231
MS.gene67694.t1 MTR_5g074860 41.667 324 170 10 3 315 9 324 3.01e-74 231
MS.gene67694.t1 MTR_2g084080 39.571 326 175 6 4 316 1 317 3.31e-74 231
MS.gene67694.t1 MTR_4g127670 43.421 304 158 8 23 316 24 323 3.93e-74 231
MS.gene67694.t1 MTR_2g084090 39.450 327 175 7 4 316 1 318 4.52e-74 231
MS.gene67694.t1 MTR_4g125940 41.925 322 172 8 7 316 11 329 4.84e-74 231
MS.gene67694.t1 MTR_4g095450 40.867 323 171 8 2 312 6 320 6.53e-74 230
MS.gene67694.t1 MTR_8g076820 42.105 304 169 5 20 316 27 330 9.61e-74 230
MS.gene67694.t1 MTR_1g009750 42.763 304 162 8 23 316 27 328 6.73e-73 228
MS.gene67694.t1 MTR_2g029750 39.385 325 185 8 3 316 7 330 9.55e-73 228
MS.gene67694.t1 MTR_4g030890 40.523 306 177 4 15 316 92 396 1.21e-72 230
MS.gene67694.t1 MTR_2g029740 38.957 326 187 8 2 316 6 330 2.12e-72 228
MS.gene67694.t1 MTR_4g029180 42.809 299 156 7 26 316 30 321 3.08e-72 226
MS.gene67694.t1 MTR_2g084000 38.415 328 181 7 1 316 1 319 6.06e-72 225
MS.gene67694.t1 MTR_1g090760 39.571 326 185 8 1 316 7 330 1.90e-71 224
MS.gene67694.t1 MTR_7g086870 38.926 298 170 6 23 316 22 311 2.99e-71 223
MS.gene67694.t1 MTR_1g022970 42.951 305 160 7 23 316 46 347 3.10e-71 224
MS.gene67694.t1 MTR_2g029800 40.260 308 174 7 18 316 24 330 3.72e-71 224
MS.gene67694.t1 MTR_6g027440 37.179 312 186 6 10 316 8 314 4.11e-71 223
MS.gene67694.t1 MTR_2g029850 39.297 313 170 8 18 316 24 330 4.29e-71 224
MS.gene67694.t1 MTR_5g014100 42.244 303 161 7 27 316 30 331 4.75e-71 223
MS.gene67694.t1 MTR_7g026990 40.063 317 175 9 7 316 14 322 5.21e-71 223
MS.gene67694.t1 MTR_4g031140 39.748 317 185 5 4 316 10 324 1.07e-70 223
MS.gene67694.t1 MTR_5g083860 39.130 322 180 7 3 316 12 325 1.74e-70 222
MS.gene67694.t1 MTR_2g029730 40.264 303 171 7 23 316 25 326 3.85e-70 221
MS.gene67694.t1 MTR_3g105790 38.941 321 183 7 4 316 7 322 9.80e-70 220
MS.gene67694.t1 MTR_4g125940 44.322 273 138 7 55 316 5 274 2.74e-69 217
MS.gene67694.t1 MTR_2g099175 38.507 335 182 8 3 316 4 335 2.96e-69 219
MS.gene67694.t1 MTR_1g115900 38.941 321 179 8 6 316 8 321 4.27e-69 218
MS.gene67694.t1 MTR_2g437770 40.397 302 162 5 23 316 50 341 9.86e-69 218
MS.gene67694.t1 MTR_7g072510 38.462 312 179 4 11 316 8 312 1.19e-68 216
MS.gene67694.t1 MTR_8g062780 39.934 303 166 6 26 316 26 324 1.65e-68 217
MS.gene67694.t1 MTR_2g084020 38.226 327 182 7 1 316 1 318 1.67e-68 216
MS.gene67694.t1 MTR_5g074970 39.117 317 176 5 10 316 17 326 2.43e-68 216
MS.gene67694.t1 MTR_2g084010 38.365 318 177 7 8 316 11 318 2.69e-68 216
MS.gene67694.t1 MTR_4g087965 40.328 305 167 7 21 312 40 342 3.88e-68 216
MS.gene67694.t1 MTR_0286s0010 40.439 319 177 8 7 316 20 334 2.62e-67 214
MS.gene67694.t1 MTR_6g008075 40.439 319 177 8 7 316 20 334 2.62e-67 214
MS.gene67694.t1 MTR_4g083710 36.760 321 192 7 3 316 8 324 4.00e-67 213
MS.gene67694.t1 MTR_2g029910 38.961 308 179 6 18 316 25 332 5.87e-67 213
MS.gene67694.t1 MTR_4g133800 40.667 300 163 5 24 316 42 333 7.11e-67 213
MS.gene67694.t1 MTR_7g072480 38.700 323 184 5 1 316 1 316 8.46e-67 212
MS.gene67694.t1 MTR_3g094670 39.571 326 172 8 3 316 10 322 9.24e-67 212
MS.gene67694.t1 MTR_6g043280 38.614 303 170 7 21 316 39 332 2.07e-66 211
MS.gene67694.t1 MTR_5g074710 40.923 325 162 10 12 316 7 321 7.30e-66 210
MS.gene67694.t1 MTR_6g043240 39.735 302 166 6 21 316 40 331 1.27e-65 210
MS.gene67694.t1 MTR_5g074760 39.628 323 174 9 7 316 7 321 3.10e-65 208
MS.gene67694.t1 MTR_5g074740 39.210 329 179 9 1 316 1 321 3.72e-65 208
MS.gene67694.t1 MTR_4g029200 40.000 300 167 6 23 316 46 338 8.30e-65 207
MS.gene67694.t1 MTR_3g094630 40.498 321 163 9 12 316 14 322 1.50e-64 206
MS.gene67694.t1 MTR_4g132490 36.184 304 185 5 20 316 26 327 1.64e-64 206
MS.gene67694.t1 MTR_6g043460 38.127 299 170 6 21 312 34 324 1.03e-63 205
MS.gene67694.t1 MTR_3g466180 40.312 320 171 9 7 316 14 323 4.59e-62 200
MS.gene67694.t1 MTR_4g074995 34.688 320 187 7 3 316 5 308 1.87e-61 198
MS.gene67694.t1 MTR_2g008730 35.443 316 172 3 5 315 8 296 2.95e-61 197
MS.gene67694.t1 MTR_1g009750 39.404 302 158 9 23 316 27 311 5.08e-61 197
MS.gene67694.t1 MTR_2g029830 41.762 261 141 8 66 316 2 261 7.35e-60 193
MS.gene67694.t1 MTR_3g072190 42.264 265 124 8 66 316 2 251 1.06e-58 189
MS.gene67694.t1 MTR_4g029190 36.873 339 182 9 4 316 8 340 1.68e-58 191
MS.gene67694.t1 MTR_2g067440 34.731 334 182 6 17 315 54 386 3.13e-58 192
MS.gene67694.t1 MTR_3g467600 38.558 319 176 8 10 316 14 324 9.17e-58 189
MS.gene67694.t1 MTR_2g078610 34.821 336 182 7 17 315 70 405 1.24e-57 191
MS.gene67694.t1 MTR_2g077990 34.821 336 182 7 17 315 70 405 3.90e-57 190
MS.gene67694.t1 MTR_4g074990 34.375 320 185 7 3 316 5 305 4.45e-57 186
MS.gene67694.t1 MTR_2g078280 35.000 320 175 5 17 303 70 389 1.60e-56 187
MS.gene67694.t1 MTR_2g008160 37.413 286 169 5 23 302 24 305 8.06e-56 184
MS.gene67694.t1 MTR_4g074980 37.698 252 152 4 3 252 5 253 8.33e-56 182
MS.gene67694.t1 MTR_4g074980 34.985 323 168 10 3 316 5 294 1.88e-55 182
MS.gene67694.t1 MTR_1g066710 37.255 306 178 6 20 316 23 323 4.24e-55 182
MS.gene67694.t1 MTR_1g066380 35.484 310 171 6 23 316 27 323 6.17e-52 174
MS.gene67694.t1 MTR_5g033470 33.333 309 187 7 23 316 73 377 9.32e-52 175
MS.gene67694.t1 MTR_5g074860 35.185 324 152 9 3 315 9 285 1.23e-51 172
MS.gene67694.t1 MTR_1g066640 35.350 314 173 7 20 316 23 323 1.88e-50 170
MS.gene67694.t1 MTR_4g132110 33.542 319 183 5 10 312 19 324 1.33e-49 168
MS.gene67694.t1 MTR_3g105790 38.683 243 140 5 82 316 5 246 4.97e-49 164
MS.gene67694.t1 MTR_0147s0010 33.229 319 173 6 23 315 77 381 5.59e-48 165
MS.gene67694.t1 MTR_4g132110 33.025 324 183 6 10 312 19 329 2.23e-47 162
MS.gene67694.t1 MTR_1g066680 35.621 306 182 8 20 316 23 322 2.25e-47 162
MS.gene67694.t1 MTR_2g008160 43.605 172 95 1 23 194 24 193 4.58e-45 152
MS.gene67694.t1 MTR_2g008160 34.266 286 143 5 23 302 24 270 5.22e-44 152
MS.gene67694.t1 MTR_2g067450 33.546 313 186 8 17 315 5 309 8.20e-44 152
MS.gene67694.t1 MTR_1g066380 34.962 266 144 6 67 316 3 255 1.12e-40 142
MS.gene67694.t1 MTR_5g074700 36.245 229 118 8 96 316 6 214 3.10e-34 124
MS.gene67694.t1 MTR_3g072210 38.071 197 96 7 133 316 55 238 9.96e-34 124
MS.gene67694.t1 MTR_2g029880 37.368 190 102 6 134 316 9 188 1.70e-32 120
MS.gene67694.t1 MTR_7g072490 33.761 234 94 6 69 301 2 175 7.32e-28 107
MS.gene67694.t1 MTR_7g086790 34.359 195 104 4 70 262 17 189 5.09e-27 105
MS.gene67694.t1 MTR_3g072260 43.609 133 68 2 4 129 1 133 2.26e-26 102
MS.gene67694.t1 MTR_1g089005 42.308 130 69 1 10 133 2 131 2.44e-25 99.8
MS.gene67694.t1 MTR_4g114220 49.038 104 38 3 49 152 29 117 5.69e-24 95.5
MS.gene67694.t1 MTR_2g077980 29.021 286 155 8 75 315 1 283 9.06e-24 99.0
MS.gene67694.t1 MTR_7g086810 41.525 118 44 1 23 140 6 98 1.71e-22 94.4
MS.gene67694.t1 MTR_6g048160 61.429 70 24 1 62 131 22 88 3.18e-22 89.4
MS.gene67694.t1 MTR_3g462850 40.141 142 74 5 185 316 9 149 3.68e-22 90.9
MS.gene67694.t1 MTR_2g078560 30.222 225 121 6 127 315 95 319 1.15e-21 93.6
MS.gene67694.t1 MTR_5g058120 34.375 160 90 4 157 312 7 155 1.11e-19 87.0
MS.gene67694.t1 MTR_7g086785 47.945 73 38 0 68 140 3 75 2.59e-18 80.1
MS.gene67694.t1 MTR_3g107060 27.368 285 134 12 36 305 88 314 4.31e-18 83.6
MS.gene67694.t1 MTR_6g071110 45.977 87 36 2 90 176 81 156 5.41e-15 72.0
MS.gene67694.t1 MTR_7g107500 42.500 80 37 3 243 316 21 97 5.43e-13 64.3
MS.gene67694.t1 MTR_4g012865 39.437 71 43 0 23 93 77 147 1.04e-11 62.4
MS.gene67694.t1 MTR_1g098320 40.541 74 40 2 243 312 47 120 2.72e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene67694.t1 AT5G42180 66.346 312 102 2 7 315 5 316 2.96e-153 432
MS.gene67694.t1 AT5G51890 56.962 316 129 3 8 316 7 322 3.23e-128 369
MS.gene67694.t1 AT4G33420 45.741 317 157 5 4 316 20 325 1.02e-94 284
MS.gene67694.t1 AT4G33420 45.741 317 157 5 4 316 67 372 6.73e-94 283
MS.gene67694.t1 AT1G05260 47.351 302 149 7 23 316 26 325 1.37e-89 271
MS.gene67694.t1 AT4G11290 42.991 321 174 6 5 316 6 326 2.57e-87 265
MS.gene67694.t1 AT5G15180 45.031 322 162 8 7 316 11 329 6.60e-87 264
MS.gene67694.t1 AT3G21770 46.465 297 149 6 12 302 18 310 8.02e-87 264
MS.gene67694.t1 AT4G36430 44.625 307 161 6 18 316 25 330 1.62e-85 260
MS.gene67694.t1 AT3G01190 44.375 320 167 8 3 316 7 321 3.74e-85 259
MS.gene67694.t1 AT2G39040 47.386 306 148 7 23 316 46 350 3.82e-83 255
MS.gene67694.t1 AT1G05240 45.847 301 147 8 23 312 26 321 6.02e-82 251
MS.gene67694.t1 AT1G05250 45.847 301 147 8 23 312 26 321 6.02e-82 251
MS.gene67694.t1 AT2G18150 43.098 297 162 4 27 316 40 336 2.35e-81 250
MS.gene67694.t1 AT1G71695 45.066 304 153 6 21 316 42 339 1.59e-80 248
MS.gene67694.t1 AT4G16270 44.884 303 154 7 23 316 50 348 1.74e-80 248
MS.gene67694.t1 AT4G31760 40.063 317 174 6 10 316 16 326 2.91e-80 247
MS.gene67694.t1 AT2G18140 43.234 303 165 4 21 316 33 335 3.28e-80 247
MS.gene67694.t1 AT2G41480 42.901 324 168 6 7 316 8 328 7.65e-79 243
MS.gene67694.t1 AT5G14130 41.925 322 176 7 3 316 12 330 1.21e-78 243
MS.gene67694.t1 AT3G03670 37.383 321 194 3 1 316 3 321 1.32e-78 242
MS.gene67694.t1 AT5G06720 40.248 323 177 8 7 316 14 333 1.95e-78 243
MS.gene67694.t1 AT5G14130 41.925 322 176 7 3 316 53 371 2.64e-78 243
MS.gene67694.t1 AT5G66390 40.625 320 183 4 4 316 14 333 1.61e-77 240
MS.gene67694.t1 AT5G39580 40.979 327 174 10 1 316 1 319 3.49e-77 239
MS.gene67694.t1 AT2G18980 41.509 318 169 8 10 316 12 323 7.55e-77 238
MS.gene67694.t1 AT4G37530 42.484 306 161 7 23 316 27 329 2.91e-76 237
MS.gene67694.t1 AT3G49960 41.231 325 178 7 4 316 6 329 3.32e-76 236
MS.gene67694.t1 AT5G19890 44.371 302 156 6 23 316 30 327 5.19e-76 236
MS.gene67694.t1 AT4G30170 41.639 305 161 8 23 316 27 325 1.66e-75 234
MS.gene67694.t1 AT3G50990 39.938 323 184 5 4 316 19 341 2.21e-75 235
MS.gene67694.t1 AT5G64120 39.091 330 179 10 1 316 7 328 2.49e-75 234
MS.gene67694.t1 AT5G67400 42.025 326 174 7 3 316 7 329 3.71e-75 234
MS.gene67694.t1 AT5G17820 38.801 317 177 7 7 316 7 313 4.63e-75 233
MS.gene67694.t1 AT1G44970 43.667 300 157 5 27 316 49 346 1.40e-74 233
MS.gene67694.t1 AT5G06730 38.629 321 185 7 7 316 15 334 1.42e-74 233
MS.gene67694.t1 AT1G68850 40.373 322 176 9 10 316 15 335 6.89e-74 231
MS.gene67694.t1 AT5G17820 38.801 317 177 7 7 316 60 366 8.27e-74 231
MS.gene67694.t1 AT4G37520 42.157 306 162 7 23 316 27 329 9.01e-74 230
MS.gene67694.t1 AT2G24800 41.639 305 161 7 23 316 31 329 1.04e-73 230
MS.gene67694.t1 AT2G22420 38.125 320 193 4 1 316 1 319 2.60e-73 229
MS.gene67694.t1 AT5G05340 41.311 305 158 7 23 316 30 324 5.15e-73 228
MS.gene67694.t1 AT4G08770 43.279 305 161 8 23 316 24 327 1.13e-72 228
MS.gene67694.t1 AT4G37520 41.503 306 161 8 23 316 27 326 8.24e-71 223
MS.gene67694.t1 AT2G38380 40.063 317 175 9 12 316 20 333 1.19e-70 223
MS.gene67694.t1 AT4G08780 41.967 305 165 8 23 316 24 327 2.56e-70 222
MS.gene67694.t1 AT4G17690 41.584 303 164 6 22 316 25 322 2.79e-70 221
MS.gene67694.t1 AT2G38390 37.654 324 193 6 2 316 10 333 1.19e-69 220
MS.gene67694.t1 AT3G32980 39.375 320 181 9 8 316 17 334 4.21e-69 219
MS.gene67694.t1 AT4G37530 45.059 253 132 5 23 269 27 278 5.36e-69 216
MS.gene67694.t1 AT2G35380 39.394 330 179 11 6 316 8 335 1.45e-68 217
MS.gene67694.t1 AT4G26010 38.558 319 176 6 5 316 4 309 1.83e-68 216
MS.gene67694.t1 AT5G64100 39.016 305 161 8 25 316 39 331 2.25e-68 216
MS.gene67694.t1 AT4G26010 38.558 319 176 6 5 316 32 337 4.14e-68 216
MS.gene67694.t1 AT3G49120 40.328 305 170 8 23 316 32 335 4.95e-68 216
MS.gene67694.t1 AT1G14550 41.118 304 161 8 23 316 26 321 6.76e-68 215
MS.gene67694.t1 AT5G40150 41.368 307 157 8 23 316 32 328 7.60e-68 215
MS.gene67694.t1 AT1G30870 40.066 302 166 6 23 316 51 345 1.59e-67 215
MS.gene67694.t1 AT5G19880 39.937 318 177 10 11 316 14 329 1.70e-67 214
MS.gene67694.t1 AT5G64110 40.067 297 167 5 27 316 38 330 7.03e-67 213
MS.gene67694.t1 AT1G49570 41.379 290 163 5 20 302 43 332 1.57e-66 213
MS.gene67694.t1 AT3G28200 40.728 302 165 6 23 316 21 316 2.75e-66 211
MS.gene67694.t1 AT5G47000 37.654 324 185 7 4 316 13 330 1.79e-65 209
MS.gene67694.t1 AT4G33870 37.237 333 167 5 23 314 68 399 2.50e-65 211
MS.gene67694.t1 AT1G14540 36.196 326 184 10 4 316 1 315 2.04e-64 206
MS.gene67694.t1 AT1G34510 37.421 318 181 6 5 316 4 309 9.19e-64 204
MS.gene67694.t1 AT5G58400 37.771 323 180 9 6 316 12 325 2.15e-63 204
MS.gene67694.t1 AT3G49110 38.689 305 175 8 23 316 33 336 2.93e-63 204
MS.gene67694.t1 AT5G22410 35.976 328 189 10 1 313 1 322 3.51e-63 203
MS.gene67694.t1 AT2G34060 38.111 307 173 7 21 313 40 343 3.90e-63 203
MS.gene67694.t1 AT5G58390 39.009 323 176 9 5 316 4 316 1.04e-62 201
MS.gene67694.t1 AT2G43480 38.436 307 174 7 21 316 33 335 2.78e-62 201
MS.gene67694.t1 AT1G24110 37.342 316 187 7 10 316 9 322 1.42e-60 196
MS.gene67694.t1 AT5G24070 35.410 305 182 7 23 316 35 335 2.50e-60 196
MS.gene67694.t1 AT3G17070 34.472 322 203 5 3 316 18 339 2.46e-58 191
MS.gene67694.t1 AT4G25980 34.169 319 196 6 8 316 12 326 2.62e-58 191
MS.gene67694.t1 AT1G77100 35.780 327 191 10 1 316 1 319 7.54e-52 174
MS.gene67694.t1 AT5G39580 45.876 194 98 3 2 195 8 194 8.42e-51 168
MS.gene67694.t1 AT2G37130 34.405 311 174 7 23 316 30 327 9.82e-50 168
MS.gene67694.t1 AT2G37130 34.304 309 173 7 25 316 1 296 1.72e-49 167
MS.gene67694.t1 AT4G21960 32.537 335 193 6 2 316 6 327 1.72e-47 162
MS.gene67694.t1 AT2G35380 40.081 247 132 10 84 316 3 247 4.30e-46 156
MS.gene67694.t1 AT4G25980 41.622 185 105 2 8 192 57 238 1.67e-45 156
MS.gene67694.t1 AT2G24800 48.538 171 82 3 23 192 31 196 1.90e-45 155
MS.gene67694.t1 AT3G17070 33.846 260 163 6 65 316 18 276 2.43e-42 147
MS.gene67694.t1 AT4G35970 29.825 285 136 10 34 303 6 241 1.53e-17 81.6
MS.gene67694.t1 AT4G35970 29.545 264 122 10 34 282 6 220 2.34e-13 68.6
MS.gene67694.t1 AT3G42570 34.286 105 67 1 84 186 43 147 6.38e-12 63.2

Find 51 sgRNAs with CRISPR-Local

Find 89 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAACCAATTGCTTGGTCTT+TGG 0.238144 5.2:+13882198 None:intergenic
AAACCAATTGCTTGGTCTTT+GGG 0.281172 5.2:+13882199 None:intergenic
CATGTGTAGCATTAAAGTTT+TGG 0.328425 5.2:+13882406 None:intergenic
AATGCATGCAATGAAATATT+TGG 0.334518 5.2:+13882991 None:intergenic
TTGTCTTGTTTCACTGGCCT+TGG 0.339540 5.2:+13882667 None:intergenic
TACAGTCTGGAGGACCTAAA+TGG 0.359036 5.2:-13882724 MS.gene67694:intron
AGCAAGGGACGCAGTTTATC+TGG 0.362051 5.2:-13882887 MS.gene67694:intron
TGGTAATTGTCTTGTTTCAC+TGG 0.384054 5.2:+13882661 None:intergenic
CAGCCCAAAGACCAAGCAAT+TGG 0.410084 5.2:-13882202 MS.gene67694:CDS
TCAATGGTGGGCAAGAAGTT+AGG 0.414717 5.2:-13882107 MS.gene67694:CDS
TGATAAATCATGCCATGATC+TGG 0.415842 5.2:-13883297 MS.gene67694:CDS
AGCAATCATGGAAGTGCATT+CGG 0.445468 5.2:+13883207 None:intergenic
AAGAAAACAAGCCTTCTTGT+TGG 0.450973 5.2:+13882244 None:intergenic
TAAGTTTGCCGCCTCACAAA+AGG 0.470132 5.2:-13882175 MS.gene67694:CDS
GTTCCAAAAGGAAGAAAAGA+TGG 0.475939 5.2:-13882698 MS.gene67694:CDS
AAATAATATACTCCAGATCA+TGG 0.488942 5.2:+13883285 None:intergenic
TGCATTCGGAGAAGTGCTGC+TGG 0.491913 5.2:+13883221 None:intergenic
GAAGACCCGGTAGCTCTGTC+AGG 0.494263 5.2:-13882578 MS.gene67694:intron
ATACTCGAACGAAGCAATCA+TGG 0.494818 5.2:+13883195 None:intergenic
AAAACAAGCCTTCTTGTTGG+AGG 0.496873 5.2:+13882247 None:intergenic
AAACTTAGAAACCAATTGCT+TGG 0.500113 5.2:+13882191 None:intergenic
TCTGTGCTGCTAAATTCAAA+AGG 0.503397 5.2:-13883042 MS.gene67694:CDS
CTTAATTGACATGGCTGTCA+TGG 0.507039 5.2:-13883390 None:intergenic
TTATCGAAATTTGTTGCAGA+AGG 0.514459 5.2:+13882288 None:intergenic
GGAATACCTGACAGAGCTAC+CGG 0.516764 5.2:+13882572 None:intergenic
TCAGCACAAGAAACTACGCC+AGG 0.522780 5.2:+13882925 None:intergenic
CCTAAATGGAATGTTCCAAA+AGG 0.523518 5.2:-13882710 MS.gene67694:CDS
TATGTAGGAGGGCATACCTT+AGG 0.527648 5.2:-13882462 MS.gene67694:intron
GCATTAGAAGCTAAATGCCC+TGG 0.544431 5.2:-13882943 MS.gene67694:CDS
GCAAACGATTGATGTAATGA+AGG 0.545643 5.2:+13882375 None:intergenic
AGCATTGTCAGTGGAAGACC+CGG 0.554160 5.2:-13882591 MS.gene67694:CDS
CTGTGAAGGATGCTACTGCT+AGG 0.556569 5.2:-13883256 MS.gene67694:CDS
CTTTAATGCTACACATGACG+TGG 0.559892 5.2:-13882400 MS.gene67694:CDS
AAATTGATCCTCCAACAAGA+AGG 0.562255 5.2:-13882255 MS.gene67694:CDS
TATTCTCGCTCTCGCAGCAA+GGG 0.565246 5.2:-13882902 MS.gene67694:CDS
AGTTGTGATATGTTGAATGT+TGG 0.566339 5.2:+13882635 None:intergenic
GATATGTTGAATGTTGGTGC+TGG 0.579055 5.2:+13882641 None:intergenic
TGTGAAGGATGCTACTGCTA+GGG 0.598284 5.2:-13883255 MS.gene67694:CDS
ATATTCTCGCTCTCGCAGCA+AGG 0.601121 5.2:-13882903 MS.gene67694:CDS
CTCTCAAAGAGCATTGTCAG+TGG 0.611421 5.2:-13882600 MS.gene67694:CDS
CAAACGATTGATGTAATGAA+GGG 0.613974 5.2:+13882376 None:intergenic
GCATGCAATGAAATATTTGG+TGG 0.618992 5.2:+13882994 None:intergenic
TGGTGGGCAAGAAGTTAGGA+AGG 0.619256 5.2:-13882103 MS.gene67694:CDS
AAAAGATGGAAGAACATCCA+AGG 0.622128 5.2:-13882684 MS.gene67694:CDS
TGAGCAGTGAGAGAAGCCTA+AGG 0.624872 5.2:+13882446 None:intergenic
AAATGAGTAGCATCAATGGT+GGG 0.625299 5.2:-13882119 MS.gene67694:CDS
AAAATGAGTAGCATCAATGG+TGG 0.631742 5.2:-13882120 MS.gene67694:CDS
TGTTGCAGAAGGATCCATAG+TGG 0.631760 5.2:+13882299 None:intergenic
ATGTATATTCTACAGTCTGG+AGG 0.635741 5.2:-13882734 MS.gene67694:intron
GAATACCTGACAGAGCTACC+GGG 0.651133 5.2:+13882573 None:intergenic
CAGCACAAGAAACTACGCCA+GGG 0.694829 5.2:+13882926 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTGGAAAACATGAAAAA+TGG + chr5.2:13882943-13882962 None:intergenic 20.0%
!! AATTTGTCTGTTGAAAAATA+AGG - chr5.2:13883126-13883145 MS.gene67694:intron 20.0%
!! TGAATAATCAAATGTATAGA+TGG + chr5.2:13882354-13882373 None:intergenic 20.0%
!!! AAGTTTTAACTGATAAATGA+TGG - chr5.2:13882699-13882718 MS.gene67694:CDS 20.0%
!!! TTTGATTATCATTTTTTCAG+TGG - chr5.2:13882109-13882128 MS.gene67694:CDS 20.0%
!!! TTTTCCAATTTATATCTGAA+TGG - chr5.2:13882952-13882971 MS.gene67694:CDS 20.0%
!!! TTTTTGCAGTTTTTAACTTT+AGG + chr5.2:13882915-13882934 None:intergenic 20.0%
!!! TTTTTTCCTATACTTTTGAA+GGG - chr5.2:13882388-13882407 MS.gene67694:CDS 20.0%
!!! TTTTTTTCCTATACTTTTGA+AGG - chr5.2:13882387-13882406 MS.gene67694:CDS 20.0%
! AAAAACAATGTCAAGAAGAA+AGG + chr5.2:13882308-13882327 None:intergenic 25.0%
! AAATAATATACTCCAGATCA+TGG + chr5.2:13882181-13882200 None:intergenic 25.0%
! AACTCCATTCAGATATAAAT+TGG + chr5.2:13882959-13882978 None:intergenic 25.0%
! AATGCATGCAATGAAATATT+TGG + chr5.2:13882475-13882494 None:intergenic 25.0%
! ATAAAAATGAGTAGCATCAA+TGG - chr5.2:13883340-13883359 MS.gene67694:CDS 25.0%
!!! TATTATTTTGAAGACTGTGA+AGG - chr5.2:13882193-13882212 MS.gene67694:CDS 25.0%
!!! TTTTTCCTATACTTTTGAAG+GGG - chr5.2:13882389-13882408 MS.gene67694:CDS 25.0%
AAAAACAAAGCAGAAAAGGA+TGG - chr5.2:13882445-13882464 MS.gene67694:CDS 30.0%
AAAAATAAGGCCAAAAATGC+TGG - chr5.2:13883139-13883158 MS.gene67694:intron 30.0%
AAACTTAGAAACCAATTGCT+TGG + chr5.2:13883275-13883294 None:intergenic 30.0%
AGGAAAAAACAAAGCAGAAA+AGG - chr5.2:13882441-13882460 MS.gene67694:CDS 30.0%
AGTTGTGATATGTTGAATGT+TGG + chr5.2:13882831-13882850 None:intergenic 30.0%
CAAACGATTGATGTAATGAA+GGG + chr5.2:13883090-13883109 None:intergenic 30.0%
TCAAATGTATAGATGGTTTG+CGG + chr5.2:13882347-13882366 None:intergenic 30.0%
TCTATGTATATTCTACAGTC+TGG - chr5.2:13882726-13882745 MS.gene67694:intron 30.0%
! CATGTGTAGCATTAAAGTTT+TGG + chr5.2:13883060-13883079 None:intergenic 30.0%
!! ACTCATTTTTATCATGGACT+TGG + chr5.2:13883332-13883351 None:intergenic 30.0%
!! GATGCTACTCATTTTTATCA+TGG + chr5.2:13883338-13883357 None:intergenic 30.0%
!! TTATCGAAATTTGTTGCAGA+AGG + chr5.2:13883178-13883197 None:intergenic 30.0%
!!! ATTTTTTCAGTGGTTTCTAC+AGG - chr5.2:13882119-13882138 MS.gene67694:CDS 30.0%
AAAAGATGGAAGAACATCCA+AGG - chr5.2:13882779-13882798 MS.gene67694:intron 35.0%
AAAATGAGTAGCATCAATGG+TGG - chr5.2:13883343-13883362 MS.gene67694:CDS 35.0%
AAATGAGTAGCATCAATGGT+GGG - chr5.2:13883344-13883363 MS.gene67694:CDS 35.0%
AAATTGATCCTCCAACAAGA+AGG - chr5.2:13883208-13883227 MS.gene67694:CDS 35.0%
AAGAAAACAAGCCTTCTTGT+TGG + chr5.2:13883222-13883241 None:intergenic 35.0%
ATGTATATTCTACAGTCTGG+AGG - chr5.2:13882729-13882748 MS.gene67694:intron 35.0%
CCTAAATGGAATGTTCCAAA+AGG - chr5.2:13882753-13882772 MS.gene67694:intron 35.0%
GCAAACGATTGATGTAATGA+AGG + chr5.2:13883091-13883110 None:intergenic 35.0%
GCATGCAATGAAATATTTGG+TGG + chr5.2:13882472-13882491 None:intergenic 35.0%
GTTCCAAAAGGAAGAAAAGA+TGG - chr5.2:13882765-13882784 MS.gene67694:intron 35.0%
TGATAAATCATGCCATGATC+TGG - chr5.2:13882166-13882185 MS.gene67694:CDS 35.0%
! AAACCAATTGCTTGGTCTTT+GGG + chr5.2:13883267-13883286 None:intergenic 35.0%
! CAAATGTATAGATGGTTTGC+GGG + chr5.2:13882346-13882365 None:intergenic 35.0%
! CTTCCATCTTTTCTTCCTTT+TGG + chr5.2:13882771-13882790 None:intergenic 35.0%
! GTCTCAATGAAAGAGAGTTT+TGG + chr5.2:13882622-13882641 None:intergenic 35.0%
! TCTGTGCTGCTAAATTCAAA+AGG - chr5.2:13882421-13882440 MS.gene67694:CDS 35.0%
!! TGGTAATTGTCTTGTTTCAC+TGG + chr5.2:13882805-13882824 None:intergenic 35.0%
!!! ACATGTTTTGACCCATATGT+AGG - chr5.2:13882986-13883005 MS.gene67694:CDS 35.0%
!!! CCTTTTGGAACATTCCATTT+AGG + chr5.2:13882756-13882775 None:intergenic 35.0%
!!! TAAAGTTTTGGATTCTGCTC+TGG + chr5.2:13883048-13883067 None:intergenic 35.0%
AAAACAAGCCTTCTTGTTGG+AGG + chr5.2:13883219-13883238 None:intergenic 40.0%
ATACTCGAACGAAGCAATCA+TGG + chr5.2:13882271-13882290 None:intergenic 40.0%
CTTTAATGCTACACATGACG+TGG - chr5.2:13883063-13883082 MS.gene67694:intron 40.0%
GATATGTTGAATGTTGGTGC+TGG + chr5.2:13882825-13882844 None:intergenic 40.0%
! AAAGAAAGCCTTTTGTGAGG+CGG + chr5.2:13883299-13883318 None:intergenic 40.0%
! AGCAATCATGGAAGTGCATT+CGG + chr5.2:13882259-13882278 None:intergenic 40.0%
! GAAACCAATTGCTTGGTCTT+TGG + chr5.2:13883268-13883287 None:intergenic 40.0%
! GTCAAAGAAAGCCTTTTGTG+AGG + chr5.2:13883302-13883321 None:intergenic 40.0%
! TATAGATGGTTTGCGGGAAA+AGG + chr5.2:13882340-13882359 None:intergenic 40.0%
! TCACACCCCTTCAAAAGTAT+AGG + chr5.2:13882397-13882416 None:intergenic 40.0%
!! AGGCTTGTTTTCTTCTGATC+AGG - chr5.2:13883228-13883247 MS.gene67694:CDS 40.0%
!! GTTTTGACCCATATGTAGGA+GGG - chr5.2:13882990-13883009 MS.gene67694:CDS 40.0%
!!! TGTTTTGACCCATATGTAGG+AGG - chr5.2:13882989-13883008 MS.gene67694:CDS 40.0%
AAGGTATGCCCTCCTACATA+TGG + chr5.2:13883001-13883020 None:intergenic 45.0%
AGGTATGCCCTCCTACATAT+GGG + chr5.2:13883000-13883019 None:intergenic 45.0%
CAAAAATGCTGGCACCACTA+TGG - chr5.2:13883150-13883169 MS.gene67694:intron 45.0%
GCATTAGAAGCTAAATGCCC+TGG - chr5.2:13882520-13882539 MS.gene67694:intron 45.0%
TAAGTTTGCCGCCTCACAAA+AGG - chr5.2:13883288-13883307 MS.gene67694:CDS 45.0%
TACAGTCTGGAGGACCTAAA+TGG - chr5.2:13882739-13882758 MS.gene67694:intron 45.0%
TGTGAAGGATGCTACTGCTA+GGG - chr5.2:13882208-13882227 MS.gene67694:CDS 45.0%
TGTTGCAGAAGGATCCATAG+TGG + chr5.2:13883167-13883186 None:intergenic 45.0%
! TATGTAGGAGGGCATACCTT+AGG - chr5.2:13883001-13883020 MS.gene67694:CDS 45.0%
!! CATAGTGGTGCCAGCATTTT+TGG + chr5.2:13883152-13883171 None:intergenic 45.0%
!! CTCTCAAAGAGCATTGTCAG+TGG - chr5.2:13882863-13882882 MS.gene67694:intron 45.0%
!! TCAATGGTGGGCAAGAAGTT+AGG - chr5.2:13883356-13883375 MS.gene67694:CDS 45.0%
!! TTGTCTTGTTTCACTGGCCT+TGG + chr5.2:13882799-13882818 None:intergenic 45.0%
AGCAAGGGACGCAGTTTATC+TGG - chr5.2:13882576-13882595 MS.gene67694:intron 50.0%
AGCATTGTCAGTGGAAGACC+CGG - chr5.2:13882872-13882891 MS.gene67694:intron 50.0%
ATATTCTCGCTCTCGCAGCA+AGG - chr5.2:13882560-13882579 MS.gene67694:intron 50.0%
CAGCACAAGAAACTACGCCA+GGG + chr5.2:13882540-13882559 None:intergenic 50.0%
CAGCCCAAAGACCAAGCAAT+TGG - chr5.2:13883261-13883280 MS.gene67694:CDS 50.0%
CTGTGAAGGATGCTACTGCT+AGG - chr5.2:13882207-13882226 MS.gene67694:CDS 50.0%
GAATACCTGACAGAGCTACC+GGG + chr5.2:13882893-13882912 None:intergenic 50.0%
GGAATACCTGACAGAGCTAC+CGG + chr5.2:13882894-13882913 None:intergenic 50.0%
TATTCTCGCTCTCGCAGCAA+GGG - chr5.2:13882561-13882580 MS.gene67694:intron 50.0%
TCAGCACAAGAAACTACGCC+AGG + chr5.2:13882541-13882560 None:intergenic 50.0%
TGAGCAGTGAGAGAAGCCTA+AGG + chr5.2:13883020-13883039 None:intergenic 50.0%
! TGGTGGGCAAGAAGTTAGGA+AGG - chr5.2:13883360-13883379 MS.gene67694:CDS 50.0%
!! TGCATTCGGAGAAGTGCTGC+TGG + chr5.2:13882245-13882264 None:intergenic 55.0%
! GAAGACCCGGTAGCTCTGTC+AGG - chr5.2:13882885-13882904 MS.gene67694:intron 60.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 13882083 13883402 13882083 ID=MS.gene67694
chr5.2 mRNA 13882083 13883402 13882083 ID=MS.gene67694.t1;Parent=MS.gene67694
chr5.2 exon 13883199 13883402 13883199 ID=MS.gene67694.t1.exon1;Parent=MS.gene67694.t1
chr5.2 CDS 13883199 13883402 13883199 ID=cds.MS.gene67694.t1;Parent=MS.gene67694.t1
chr5.2 exon 13882888 13883076 13882888 ID=MS.gene67694.t1.exon2;Parent=MS.gene67694.t1
chr5.2 CDS 13882888 13883076 13882888 ID=cds.MS.gene67694.t1;Parent=MS.gene67694.t1
chr5.2 exon 13882579 13882741 13882579 ID=MS.gene67694.t1.exon3;Parent=MS.gene67694.t1
chr5.2 CDS 13882579 13882741 13882579 ID=cds.MS.gene67694.t1;Parent=MS.gene67694.t1
chr5.2 exon 13882083 13882477 13882083 ID=MS.gene67694.t1.exon4;Parent=MS.gene67694.t1
chr5.2 CDS 13882083 13882477 13882083 ID=cds.MS.gene67694.t1;Parent=MS.gene67694.t1
Gene Sequence

>MS.gene67694

ATGGCTGTCATGGTTGCATTCTTGAATTTGATTATCATTTTTTCAGTGGTTTCTACAGGAAAATCACTCAGCTTAAACTACTATGATAAATCATGCCATGATCTGGAGTATATTATTTTGAAGACTGTGAAGGATGCTACTGCTAGGGACAAAACTGTTCCAGCAGCACTTCTCCGAATGCACTTCCATGATTGCTTCGTTCGAGTATTGCTATATTGAACTCCTTTCTTCTTGACATTGTTTTTTTCTTGTTTCCTTTTCCCGCAAACCATCTATACATTTGATTATTCATTTGAATGTGTCGTTTTTTTCCTATACTTTTGAAGGGGTGTGATGCATCTGTGCTGCTAAATTCAAAAGGAAAAAACAAAGCAGAAAAGGATGGACCACCAAATATTTCATTGCATGCATTCTATGTCATTGATGAAGCAAAGAAAGCATTAGAAGCTAAATGCCCTGGCGTAGTTTCTTGTGCTGATATTCTCGCTCTCGCAGCAAGGGACGCAGTTTATCTGGTAATAAAACAAAGTCAAGAACCAAAACTCTCTTTCATTGAGACTCTGTTATGTTGTTTACTTTAGAATTGAAATATGTAGATATAGTAACTTGCATTCGTAAGTTTTAACTGATAAATGATGGTATATCTATGTATATTCTACAGTCTGGAGGACCTAAATGGAATGTTCCAAAAGGAAGAAAAGATGGAAGAACATCCAAGGCCAGTGAAACAAGACAATTACCAGCACCAACATTCAACATATCACAACTGCAGCAAAGCTTCTCTCAAAGAGCATTGTCAGTGGAAGACCCGGTAGCTCTGTCAGGTATTCCTAAAGTTAAAAACTGCAAAAACTTCACCATTTTTCATGTTTTCCAATTTATATCTGAATGGAGTTTAAAGCAACATGTTTTGACCCATATGTAGGAGGGCATACCTTAGGCTTCTCTCACTGCTCATCTTTCCAGAGCAGAATCCAAAACTTTAATGCTACACATGACGTGGACCCTTCATTACATCAATCGTTTGCAACAAAACTAAAATCAATTTGTCTGTTGAAAAATAAGGCCAAAAATGCTGGCACCACTATGGATCCTTCTGCAACAAATTTCGATAATACATATTACAAATTGATCCTCCAACAAGAAGGCTTGTTTTCTTCTGATCAGGCTTTGCTTGACAGCCCAAAGACCAAGCAATTGGTTTCTAAGTTTGCCGCCTCACAAAAGGCTTTCTTTGACGCTTTTGCCAAGTCCATGATAAAAATGAGTAGCATCAATGGTGGGCAAGAAGTTAGGAAGGACTGCAGAAAGATCAATTAG
Protein sequence

>MS.gene67694.t1

MAVMVAFLNLIIIFSVVSTGKSLSLNYYDKSCHDLEYIILKTVKDATARDKTVPAALLRMHFHDCFVRGCDASVLLNSKGKNKAEKDGPPNISLHAFYVIDEAKKALEAKCPGVVSCADILALAARDAVYLSGGPKWNVPKGRKDGRTSKASETRQLPAPTFNISQLQQSFSQRALSVEDPVALSGGHTLGFSHCSSFQSRIQNFNATHDVDPSLHQSFATKLKSICLLKNKAKNAGTTMDPSATNFDNTYYKLILQQEGLFSSDQALLDSPKTKQLVSKFAASQKAFFDAFAKSMIKMSSINGGQEVRKDCRKIN