Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene67828.t1 | XP_003594689.1 | 95.7 | 233 | 10 | 0 | 1 | 233 | 62 | 294 | 6.30E-103 | 383.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene67828.t1 | B6J6T7 | 46.9 | 98 | 52 | 0 | 72 | 169 | 1 | 98 | 3.7e-19 | 96.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene67828.t1 | A2Q664 | 95.7 | 233 | 10 | 0 | 1 | 233 | 62 | 294 | 4.6e-103 | 383.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene051582 | MS.gene67828 | 0.800677 | 1.29E-48 | -1.69E-46 |
MS.gene056497 | MS.gene67828 | 0.846857 | 1.67E-59 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene67828.t1 | MTR_2g033490 | 93.991 | 233 | 14 | 0 | 1 | 233 | 62 | 294 | 9.42e-132 | 373 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene67828.t1 | AT3G17170 | 69.186 | 172 | 53 | 0 | 11 | 182 | 59 | 230 | 1.07e-88 | 265 |
Find 42 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCTTTCTTATCTTTCTTTC+GGG | 0.136122 | 2.4:+57143119 | None:intergenic |
TGAATCTGTTCTTCTTAAAA+AGG | 0.188788 | 2.4:-57143046 | MS.gene67828:intron |
CAGTTTCCACGTCAAGCTTT+AGG | 0.189454 | 2.4:+57141975 | None:intergenic |
CTTCTTTCTTATCTTTCTTT+CGG | 0.224970 | 2.4:+57143118 | None:intergenic |
GCCAGTGCTTTCATCTGATT+TGG | 0.244957 | 2.4:+57143077 | None:intergenic |
TATCGTAGACGACGATGATT+TGG | 0.299249 | 2.4:-57140528 | MS.gene67828:CDS |
AGTTTCCACGTCAAGCTTTA+GGG | 0.316767 | 2.4:+57141976 | None:intergenic |
GGGAGAAGAAAGGAAGAGTA+TGG | 0.343212 | 2.4:-57140877 | MS.gene67828:CDS |
GCTTGACGTGGAAACTGATA+TGG | 0.365705 | 2.4:-57141969 | MS.gene67828:CDS |
CAACGAGTTCAAGACTTTGT+TGG | 0.383716 | 2.4:-57140753 | MS.gene67828:CDS |
CCAGTGCTTTCATCTGATTT+GGG | 0.387549 | 2.4:+57143078 | None:intergenic |
CTTCGTCCCTCTTTATCACT+AGG | 0.396913 | 2.4:+57140705 | None:intergenic |
GGAAGATGGTAAAATTCTTC+CGG | 0.409818 | 2.4:-57142149 | MS.gene67828:CDS |
AGTATGGAGATTCAGTGATT+GGG | 0.412799 | 2.4:-57140861 | MS.gene67828:CDS |
GAGTATGGAGATTCAGTGAT+TGG | 0.428387 | 2.4:-57140862 | MS.gene67828:CDS |
CAGAAGACAGTTGAGGAAGA+TGG | 0.433743 | 2.4:-57142163 | MS.gene67828:CDS |
GCTGTTAATGAGAAAGTTCA+AGG | 0.436751 | 2.4:-57141394 | MS.gene67828:intron |
AAGAAGAATTTGATGATGAA+TGG | 0.453384 | 2.4:-57140619 | MS.gene67828:CDS |
GATGATATTGAGGGCGGTGA+AGG | 0.481025 | 2.4:-57140557 | MS.gene67828:CDS |
GTATTAAACTCGGGAGGAGG+AGG | 0.481879 | 2.4:+57140665 | None:intergenic |
AGAAGAATTTGATGATGAAT+GGG | 0.503389 | 2.4:-57140618 | MS.gene67828:CDS |
ATCTGATTATGATGATATTG+AGG | 0.526841 | 2.4:-57140567 | MS.gene67828:CDS |
TTCGACACCTAGTGATAAAG+AGG | 0.527803 | 2.4:-57140712 | MS.gene67828:CDS |
TCATCATCATCTTCAAACTC+CGG | 0.543493 | 2.4:+57142130 | None:intergenic |
TCATGAGAAACATGCAGAAG+AGG | 0.554875 | 2.4:-57141422 | MS.gene67828:CDS |
TATGATGAAGATGAGGAAGA+TGG | 0.559348 | 2.4:-57140590 | MS.gene67828:CDS |
GTATGGAGATTCAGTGATTG+GGG | 0.567959 | 2.4:-57140860 | MS.gene67828:CDS |
AAAGTATTAAACTCGGGAGG+AGG | 0.569590 | 2.4:+57140662 | None:intergenic |
CCCAAATCAGATGAAAGCAC+TGG | 0.572848 | 2.4:-57143078 | MS.gene67828:CDS |
TCTGATTATGATGATATTGA+GGG | 0.573289 | 2.4:-57140566 | MS.gene67828:CDS |
AGCAACAAAAGTATTAAACT+CGG | 0.581584 | 2.4:+57140655 | None:intergenic |
TGATTGGGGTATGAGAAAGT+TGG | 0.581664 | 2.4:-57140846 | MS.gene67828:CDS |
TCAAGTAAACAATCTCATAG+TGG | 0.585631 | 2.4:+57141446 | None:intergenic |
CGATGATTTGGAAATATCAG+AGG | 0.611516 | 2.4:-57140516 | MS.gene67828:CDS |
GCAACAAAAGTATTAAACTC+GGG | 0.611767 | 2.4:+57140656 | None:intergenic |
TATTAAACTCGGGAGGAGGA+GGG | 0.622797 | 2.4:+57140666 | None:intergenic |
TGAATCCCTAAAGCTTGACG+TGG | 0.629748 | 2.4:-57141981 | MS.gene67828:CDS |
GATGATTTGGAAATATCAGA+GGG | 0.634837 | 2.4:-57140515 | MS.gene67828:CDS |
GGATGAATATGATGAAGATG+AGG | 0.661571 | 2.4:-57140597 | MS.gene67828:CDS |
ACAAAAGTATTAAACTCGGG+AGG | 0.675886 | 2.4:+57140659 | None:intergenic |
TCGACACCTAGTGATAAAGA+GGG | 0.685347 | 2.4:-57140711 | MS.gene67828:CDS |
GATTATGATGATATTGAGGG+CGG | 0.728969 | 2.4:-57140563 | MS.gene67828:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATAAACAAAAATCAAATAA+AGG | + | chr2.4:57140624-57140643 | None:intergenic | 10.0% |
!! | ATAAACAAAAATCAAATAAA+GGG | + | chr2.4:57140623-57140642 | None:intergenic | 10.0% |
!! | CAAATAAAAAAAATTATTAG+AGG | + | chr2.4:57142054-57142073 | None:intergenic | 10.0% |
!! | TTGAGTTTATACTTATAAAT+TGG | - | chr2.4:57140717-57140736 | MS.gene67828:CDS | 15.0% |
!!! | TCAAGTTAAAATGATTTTTT+TGG | + | chr2.4:57142644-57142663 | None:intergenic | 15.0% |
!! | AAACTCAATAAATCTTCAAA+AGG | + | chr2.4:57140705-57140724 | None:intergenic | 20.0% |
!! | AACTCAATAAATCTTCAAAA+GGG | + | chr2.4:57140704-57140723 | None:intergenic | 20.0% |
!! | AATACAGAACAATAATGATT+TGG | + | chr2.4:57142417-57142436 | None:intergenic | 20.0% |
!! | AATTCTAATGAATCTTCAAA+AGG | + | chr2.4:57140838-57140857 | None:intergenic | 20.0% |
!! | AGTATACCAAAATAAATTTG+AGG | + | chr2.4:57140758-57140777 | None:intergenic | 20.0% |
!! | ATAGATTCGAAAAAAATGTA+AGG | + | chr2.4:57142281-57142300 | None:intergenic | 20.0% |
!! | ATGTCACTATTGTTAAATAT+AGG | - | chr2.4:57142362-57142381 | MS.gene67828:intron | 20.0% |
!! | ATTCTAATGAATCTTCAAAA+GGG | + | chr2.4:57140837-57140856 | None:intergenic | 20.0% |
!! | GTATACCAAAATAAATTTGA+GGG | + | chr2.4:57140757-57140776 | None:intergenic | 20.0% |
!! | TACCAAAAAACTAAAACAAA+TGG | + | chr2.4:57141547-57141566 | None:intergenic | 20.0% |
!! | TGTAAACCAAAATGAAAATT+TGG | + | chr2.4:57141613-57141632 | None:intergenic | 20.0% |
!! | TTCTCATTGATATTCAAATT+GGG | - | chr2.4:57141421-57141440 | MS.gene67828:CDS | 20.0% |
!! | TTTCAAATTATTAACTGTGT+CGG | + | chr2.4:57141061-57141080 | None:intergenic | 20.0% |
!! | TTTCTCATTGATATTCAAAT+TGG | - | chr2.4:57141420-57141439 | MS.gene67828:CDS | 20.0% |
!! | TTTGTAAACATTATCTAACA+AGG | + | chr2.4:57141852-57141871 | None:intergenic | 20.0% |
!!! | AAAACTAAATTTTGCATACA+AGG | + | chr2.4:57141286-57141305 | None:intergenic | 20.0% |
!!! | AAACTAAATTTTGCATACAA+GGG | + | chr2.4:57141285-57141304 | None:intergenic | 20.0% |
!!! | AAATTTTCATTTTGGTTTAC+AGG | - | chr2.4:57141612-57141631 | MS.gene67828:intron | 20.0% |
!!! | ATTTGTTTTAGTTTTTTGGT+AGG | - | chr2.4:57141546-57141565 | MS.gene67828:intron | 20.0% |
!!! | CTTTTTCCAAATTTTCATTT+TGG | - | chr2.4:57141604-57141623 | MS.gene67828:intron | 20.0% |
!!! | GATGCAATTTTTTTATTCAT+AGG | - | chr2.4:57141741-57141760 | MS.gene67828:intron | 20.0% |
!!! | TAATTTCTGATAGTTTTCAT+TGG | - | chr2.4:57140791-57140810 | MS.gene67828:CDS | 20.0% |
!!! | TTCCATTTGTTTTAGTTTTT+TGG | - | chr2.4:57141542-57141561 | MS.gene67828:intron | 20.0% |
! | AAACATACTTCTGATTATTC+TGG | - | chr2.4:57142680-57142699 | MS.gene67828:intron | 25.0% |
! | AATAATTGTATCCACAACAA+AGG | + | chr2.4:57142567-57142586 | None:intergenic | 25.0% |
! | ATCTGATTATGATGATATTG+AGG | - | chr2.4:57143058-57143077 | MS.gene67828:CDS | 25.0% |
! | ATTATCGTCATTATGGTTTA+GGG | + | chr2.4:57141883-57141902 | None:intergenic | 25.0% |
! | CAGTAACATGAAAAACTATT+TGG | - | chr2.4:57141818-57141837 | MS.gene67828:intron | 25.0% |
! | CTTCTTTCTTATCTTTCTTT+CGG | + | chr2.4:57140510-57140529 | None:intergenic | 25.0% |
! | GAAAAAATGACATAATTCAG+CGG | - | chr2.4:57141077-57141096 | MS.gene67828:intron | 25.0% |
! | TAAACATTATCTAACAAGGT+CGG | + | chr2.4:57141848-57141867 | None:intergenic | 25.0% |
! | TAGTACAAAATGTTGTCAAA+TGG | - | chr2.4:57142445-57142464 | MS.gene67828:intron | 25.0% |
! | TCTAATGAACTCATTCTATT+TGG | + | chr2.4:57142320-57142339 | None:intergenic | 25.0% |
! | TCTGATTATGATGATATTGA+GGG | - | chr2.4:57143059-57143078 | MS.gene67828:CDS | 25.0% |
! | TGAATCTGTTCTTCTTAAAA+AGG | - | chr2.4:57140579-57140598 | MS.gene67828:CDS | 25.0% |
! | TTCTTTCTTATCTTTCTTTC+GGG | + | chr2.4:57140509-57140528 | None:intergenic | 25.0% |
! | TTTAATAATCACCTTTGTTG+TGG | - | chr2.4:57142553-57142572 | MS.gene67828:intron | 25.0% |
! | TTTCTCATTGATATTCGATA+TGG | - | chr2.4:57141348-57141367 | MS.gene67828:intron | 25.0% |
!! | AATCTTATCTTGTTCTGTTT+TGG | - | chr2.4:57140916-57140935 | MS.gene67828:intron | 25.0% |
!!! | AAGAAGAATTTGATGATGAA+TGG | - | chr2.4:57143006-57143025 | MS.gene67828:intron | 25.0% |
!!! | AGAAGAATTTGATGATGAAT+GGG | - | chr2.4:57143007-57143026 | MS.gene67828:intron | 25.0% |
!!! | AGCAACAAAAGTATTAAACT+CGG | + | chr2.4:57142973-57142992 | None:intergenic | 25.0% |
!!! | TTTTAAGAAGAACAGATTCA+GGG | + | chr2.4:57140579-57140598 | None:intergenic | 25.0% |
!!! | TTTTTAAGAAGAACAGATTC+AGG | + | chr2.4:57140580-57140599 | None:intergenic | 25.0% |
CACGTTACTGAATCTTTAAA+GGG | + | chr2.4:57142118-57142137 | None:intergenic | 30.0% | |
CATCTAGATTATCGTCATTA+TGG | + | chr2.4:57141890-57141909 | None:intergenic | 30.0% | |
GATTATCGTCATTATGGTTT+AGG | + | chr2.4:57141884-57141903 | None:intergenic | 30.0% | |
GGTTAATTGCAATCTTTGAA+AGG | + | chr2.4:57142260-57142279 | None:intergenic | 30.0% | |
TCAAGTAAACAATCTCATAG+TGG | + | chr2.4:57142182-57142201 | None:intergenic | 30.0% | |
! | AAACATTTGCAGACTTTTTG+AGG | - | chr2.4:57142727-57142746 | MS.gene67828:intron | 30.0% |
! | AACATTTGCAGACTTTTTGA+GGG | - | chr2.4:57142728-57142747 | MS.gene67828:intron | 30.0% |
! | ATCCATCTTTTGCTAACTTT+TGG | - | chr2.4:57141970-57141989 | MS.gene67828:CDS | 30.0% |
! | ATTTGACATTAGAGAAGTGT+AGG | - | chr2.4:57141184-57141203 | MS.gene67828:intron | 30.0% |
! | CAATGCCCTCAAATTTATTT+TGG | - | chr2.4:57140749-57140768 | MS.gene67828:CDS | 30.0% |
! | GATGATTTGGAAATATCAGA+GGG | - | chr2.4:57143110-57143129 | MS.gene67828:CDS | 30.0% |
!! | GCAACAAAAGTATTAAACTC+GGG | + | chr2.4:57142972-57142991 | None:intergenic | 30.0% |
!!! | TAGTTTTTTGGTAGGCTAAA+TGG | - | chr2.4:57141554-57141573 | MS.gene67828:intron | 30.0% |
!!! | TTGTTCTGTTTTGGTTTGAA+GGG | - | chr2.4:57140925-57140944 | MS.gene67828:intron | 30.0% |
ACATAATTCAGCGGAATCAT+AGG | - | chr2.4:57141086-57141105 | MS.gene67828:intron | 35.0% | |
AGTATGGAGATTCAGTGATT+GGG | - | chr2.4:57142764-57142783 | MS.gene67828:intron | 35.0% | |
ATAAGTCATACACCACAAAG+TGG | + | chr2.4:57140993-57141012 | None:intergenic | 35.0% | |
ATACAAATTTGCCCACTTTG+TGG | - | chr2.4:57140978-57140997 | MS.gene67828:intron | 35.0% | |
CACATGTAATGTTACCACTA+AGG | - | chr2.4:57140860-57140879 | MS.gene67828:CDS | 35.0% | |
GATTATGATGATATTGAGGG+CGG | - | chr2.4:57143062-57143081 | MS.gene67828:CDS | 35.0% | |
GCACGTTACTGAATCTTTAA+AGG | + | chr2.4:57142119-57142138 | None:intergenic | 35.0% | |
GCTGTTAATGAGAAAGTTCA+AGG | - | chr2.4:57142231-57142250 | MS.gene67828:intron | 35.0% | |
GGAAGATGGTAAAATTCTTC+CGG | - | chr2.4:57141476-57141495 | MS.gene67828:intron | 35.0% | |
GGATGAATATGATGAAGATG+AGG | - | chr2.4:57143028-57143047 | MS.gene67828:intron | 35.0% | |
TAAGTCATACACCACAAAGT+GGG | + | chr2.4:57140992-57141011 | None:intergenic | 35.0% | |
TATGATGAAGATGAGGAAGA+TGG | - | chr2.4:57143035-57143054 | MS.gene67828:intron | 35.0% | |
TCAACTGTATTGCCAAATTG+CGG | + | chr2.4:57142503-57142522 | None:intergenic | 35.0% | |
TCATCATCATCTTCAAACTC+CGG | + | chr2.4:57141498-57141517 | None:intergenic | 35.0% | |
TGCCAAAAGTTAGCAAAAGA+TGG | + | chr2.4:57141975-57141994 | None:intergenic | 35.0% | |
! | ATTAGATTGCCATTTCCATC+TGG | - | chr2.4:57142334-57142353 | MS.gene67828:intron | 35.0% |
! | CGATGATTTGGAAATATCAG+AGG | - | chr2.4:57143109-57143128 | MS.gene67828:CDS | 35.0% |
! | CTAAATTTTGCATACAAGGG+AGG | + | chr2.4:57141282-57141301 | None:intergenic | 35.0% |
! | TCATTTTCAGAAGACAGTTG+AGG | - | chr2.4:57141455-57141474 | MS.gene67828:intron | 35.0% |
! | TTACCACTAAGGAGTTTTCT+TGG | - | chr2.4:57140871-57140890 | MS.gene67828:CDS | 35.0% |
!! | ACAAAAGTATTAAACTCGGG+AGG | + | chr2.4:57142969-57142988 | None:intergenic | 35.0% |
!! | CATTTTGATGAACTTCGAGA+TGG | - | chr2.4:57142836-57142855 | MS.gene67828:intron | 35.0% |
!!! | CTTGTTCTGTTTTGGTTTGA+AGG | - | chr2.4:57140924-57140943 | MS.gene67828:intron | 35.0% |
AAGATGGATCTAAATCCACC+TGG | + | chr2.4:57141959-57141978 | None:intergenic | 40.0% | |
ACATGAATGCCAGATGGAAA+TGG | + | chr2.4:57142346-57142365 | None:intergenic | 40.0% | |
AGTTTCCACGTCAAGCTTTA+GGG | + | chr2.4:57141652-57141671 | None:intergenic | 40.0% | |
ATAGTGACATGAATGCCAGA+TGG | + | chr2.4:57142352-57142371 | None:intergenic | 40.0% | |
ATGTTATAACCGTGCTCTCT+TGG | - | chr2.4:57141907-57141926 | MS.gene67828:intron | 40.0% | |
CAACGAGTTCAAGACTTTGT+TGG | - | chr2.4:57142872-57142891 | MS.gene67828:intron | 40.0% | |
CCAGTGCTTTCATCTGATTT+GGG | + | chr2.4:57140550-57140569 | None:intergenic | 40.0% | |
CTTCCAAGAAAACTCCTTAG+TGG | + | chr2.4:57140877-57140896 | None:intergenic | 40.0% | |
GAGTATGGAGATTCAGTGAT+TGG | - | chr2.4:57142763-57142782 | MS.gene67828:intron | 40.0% | |
GGAGAGTAACTCGCTATTTA+GGG | - | chr2.4:57140946-57140965 | MS.gene67828:intron | 40.0% | |
GTATGGAGATTCAGTGATTG+GGG | - | chr2.4:57142765-57142784 | MS.gene67828:intron | 40.0% | |
TATCGTAGACGACGATGATT+TGG | - | chr2.4:57143097-57143116 | MS.gene67828:CDS | 40.0% | |
TCATGAGAAACATGCAGAAG+AGG | - | chr2.4:57142203-57142222 | MS.gene67828:intron | 40.0% | |
TCGACACCTAGTGATAAAGA+GGG | - | chr2.4:57142914-57142933 | MS.gene67828:intron | 40.0% | |
TGAAGCATAGACACATACAC+CGG | - | chr2.4:57141019-57141038 | MS.gene67828:intron | 40.0% | |
TGATTGGGGTATGAGAAAGT+TGG | - | chr2.4:57142779-57142798 | MS.gene67828:intron | 40.0% | |
TTCGACACCTAGTGATAAAG+AGG | - | chr2.4:57142913-57142932 | MS.gene67828:intron | 40.0% | |
TTTGGTAGGCTAAATGGTTC+TGG | - | chr2.4:57141560-57141579 | MS.gene67828:intron | 40.0% | |
! | AAAGTATTAAACTCGGGAGG+AGG | + | chr2.4:57142966-57142985 | None:intergenic | 40.0% |
! | GATTTGGTCCAATTCCACTA+CGG | + | chr2.4:57142401-57142420 | None:intergenic | 40.0% |
! | GTAACTCGCTATTTAGGGTA+AGG | - | chr2.4:57140951-57140970 | MS.gene67828:intron | 40.0% |
!! | GACTTTTTGAGGGAGAAGAA+AGG | - | chr2.4:57142738-57142757 | MS.gene67828:intron | 40.0% |
CAGAAGACAGTTGAGGAAGA+TGG | - | chr2.4:57141462-57141481 | MS.gene67828:intron | 45.0% | |
CAGTTTCCACGTCAAGCTTT+AGG | + | chr2.4:57141653-57141672 | None:intergenic | 45.0% | |
CATTGTTGCGTACCGCAATT+TGG | - | chr2.4:57142488-57142507 | MS.gene67828:intron | 45.0% | |
CGATGTGTCAGTATCGTGTT+TGG | - | chr2.4:57141233-57141252 | MS.gene67828:intron | 45.0% | |
CTTATCAGACATTCACCAGG+TGG | - | chr2.4:57141941-57141960 | MS.gene67828:intron | 45.0% | |
CTTCGTCCCTCTTTATCACT+AGG | + | chr2.4:57142923-57142942 | None:intergenic | 45.0% | |
GCACAGACACTCCTCAAATT+AGG | + | chr2.4:57141148-57141167 | None:intergenic | 45.0% | |
GCCAGTGCTTTCATCTGATT+TGG | + | chr2.4:57140551-57140570 | None:intergenic | 45.0% | |
GCTATAGTGTTATGCCGTAG+TGG | - | chr2.4:57142384-57142403 | MS.gene67828:intron | 45.0% | |
GCTTGACGTGGAAACTGATA+TGG | - | chr2.4:57141656-57141675 | MS.gene67828:intron | 45.0% | |
GGGAGAAGAAAGGAAGAGTA+TGG | - | chr2.4:57142748-57142767 | MS.gene67828:intron | 45.0% | |
GGGAGAGTAACTCGCTATTT+AGG | - | chr2.4:57140945-57140964 | MS.gene67828:intron | 45.0% | |
TATTAAACTCGGGAGGAGGA+GGG | + | chr2.4:57142962-57142981 | None:intergenic | 45.0% | |
TGAATCCCTAAAGCTTGACG+TGG | - | chr2.4:57141644-57141663 | MS.gene67828:intron | 45.0% | |
! | CATTATGGTTTAGGGCAGCA+TGG | + | chr2.4:57141875-57141894 | None:intergenic | 45.0% |
! | CCCAAATCAGATGAAAGCAC+TGG | - | chr2.4:57140547-57140566 | MS.gene67828:CDS | 45.0% |
! | CGGAATCATAGGTGTTGTGT+CGG | - | chr2.4:57141097-57141116 | MS.gene67828:intron | 45.0% |
! | GGTCTTATCAGACATTCACC+AGG | - | chr2.4:57141938-57141957 | MS.gene67828:intron | 45.0% |
! | GTGTTATGCCGTAGTGGAAT+TGG | - | chr2.4:57142390-57142409 | MS.gene67828:intron | 45.0% |
AATTAGGCGTGTCCCTGTGT+CGG | + | chr2.4:57141132-57141151 | None:intergenic | 50.0% | |
ACAGGGACACGCCTAATTTG+AGG | - | chr2.4:57141134-57141153 | MS.gene67828:intron | 50.0% | |
GATGATATTGAGGGCGGTGA+AGG | - | chr2.4:57143068-57143087 | MS.gene67828:CDS | 50.0% | |
GTATTAAACTCGGGAGGAGG+AGG | + | chr2.4:57142963-57142982 | None:intergenic | 50.0% | |
! | CATAGGTGTTGTGTCGGTGT+CGG | - | chr2.4:57141103-57141122 | MS.gene67828:intron | 50.0% |
CCAGACTGTCCAAGAGAGCA+CGG | + | chr2.4:57141919-57141938 | None:intergenic | 55.0% | |
CGTGCTCTCTTGGACAGTCT+GGG | - | chr2.4:57141917-57141936 | MS.gene67828:intron | 55.0% | |
CCGTGCTCTCTTGGACAGTC+TGG | - | chr2.4:57141916-57141935 | MS.gene67828:intron | 60.0% | |
CGGCGTGTACGTGTCGTGTC+CGG | + | chr2.4:57141041-57141060 | None:intergenic | 65.0% | |
! | CGGTGTCGGACACCGACACA+GGG | - | chr2.4:57141117-57141136 | MS.gene67828:intron | 65.0% |
!! | TCGGTGTCGGACACCGACAC+AGG | - | chr2.4:57141116-57141135 | MS.gene67828:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 57140499 | 57143148 | 57140499 | ID=MS.gene67828 |
chr2.4 | mRNA | 57140499 | 57143148 | 57140499 | ID=MS.gene67828.t1;Parent=MS.gene67828 |
chr2.4 | exon | 57143047 | 57143148 | 57143047 | ID=MS.gene67828.t1.exon1;Parent=MS.gene67828.t1 |
chr2.4 | CDS | 57143047 | 57143148 | 57143047 | ID=cds.MS.gene67828.t1;Parent=MS.gene67828.t1 |
chr2.4 | exon | 57142128 | 57142182 | 57142128 | ID=MS.gene67828.t1.exon2;Parent=MS.gene67828.t1 |
chr2.4 | CDS | 57142128 | 57142182 | 57142128 | ID=cds.MS.gene67828.t1;Parent=MS.gene67828.t1 |
chr2.4 | exon | 57141957 | 57142013 | 57141957 | ID=MS.gene67828.t1.exon3;Parent=MS.gene67828.t1 |
chr2.4 | CDS | 57141957 | 57142013 | 57141957 | ID=cds.MS.gene67828.t1;Parent=MS.gene67828.t1 |
chr2.4 | exon | 57141395 | 57141472 | 57141395 | ID=MS.gene67828.t1.exon4;Parent=MS.gene67828.t1 |
chr2.4 | CDS | 57141395 | 57141472 | 57141395 | ID=cds.MS.gene67828.t1;Parent=MS.gene67828.t1 |
chr2.4 | exon | 57140499 | 57140908 | 57140499 | ID=MS.gene67828.t1.exon5;Parent=MS.gene67828.t1 |
chr2.4 | CDS | 57140499 | 57140908 | 57140499 | ID=cds.MS.gene67828.t1;Parent=MS.gene67828.t1 |
Gene Sequence |
Protein sequence |