AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene051582


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051582.t1 MTR_1g015930 93.425 365 14 4 1 360 1 360 0.0 677
MS.gene051582.t1 MTR_1g019050 47.157 299 117 9 3 296 19 281 1.32e-69 221
MS.gene051582.t1 MTR_3g084750 48.387 248 124 3 52 295 39 286 3.03e-67 216
MS.gene051582.t1 MTR_3g084750 48.387 248 124 3 52 295 91 338 6.51e-67 217
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051582.t1 AT5G52010 61.281 359 115 5 7 357 19 361 1.29e-157 448
MS.gene051582.t1 AT4G12240 49.590 244 120 3 56 296 39 282 1.41e-70 225

Find 109 sgRNAs with CRISPR-Local

Find 127 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGGATGTTGATAGGGCTTT+AGG 0.212583 1.3:+6257938 MS.gene051582:CDS
AAGGCTAGAGAGGCCAATTT+AGG 0.226076 1.3:+6257902 MS.gene051582:CDS
TGGATACGAGGTTGGGGTTT+TGG 0.235659 1.3:-6257188 None:intergenic
GAATGGTGAGGTTACGGATA+TGG 0.264144 1.3:+6258000 MS.gene051582:CDS
GGGATGTTGATAGGGCTTTA+GGG 0.271261 1.3:+6257939 MS.gene051582:CDS
ACGACAACAATGGATGATTT+TGG 0.273875 1.3:+6258073 MS.gene051582:CDS
AACAACAACAGTCCCTAAAT+TGG 0.303839 1.3:-6257915 None:intergenic
GAAGAAGAGGCAAAAGTATA+AGG 0.310905 1.3:+6257640 MS.gene051582:CDS
TTGTTGTTGGGGATGTTGAT+AGG 0.320262 1.3:+6257930 MS.gene051582:CDS
GTCGATGATGTTGTTGTTGT+TGG 0.325987 1.3:-6257219 None:intergenic
ATTTAGGGACTGTTGTTGTT+GGG 0.328367 1.3:+6257918 MS.gene051582:CDS
AGAAGTATAATGATGCTGTT+AGG 0.333113 1.3:+6257684 MS.gene051582:CDS
TGGATTTGGTTCCAAGGAAT+AGG 0.348659 1.3:+6258020 MS.gene051582:CDS
CTTTCATTCATCTTCCTCAA+TGG 0.352874 1.3:+6257423 MS.gene051582:CDS
GAGAGATAGGGCGGCGTTGT+AGG 0.354988 1.3:-6257339 None:intergenic
CTTCTTCTATCCCTATTCCT+TGG 0.367662 1.3:-6258031 None:intergenic
TGAGGTTACGGATATGGATT+TGG 0.380915 1.3:+6258006 MS.gene051582:CDS
CCTCAACATCTCACTAAAAT+CGG 0.381248 1.3:-6257879 None:intergenic
AATTTAGGGACTGTTGTTGT+TGG 0.384290 1.3:+6257917 MS.gene051582:CDS
TGAGGGAGAGGAAGGAGTGG+GGG 0.390477 1.3:-6257163 None:intergenic
TTGTTCGTAGGTTCCTTGTT+TGG 0.390669 1.3:-6257258 None:intergenic
TTGAGGGAGAGGAAGGAGTG+GGG 0.392883 1.3:-6257164 None:intergenic
CTATGAGTAGAGGGATTGAT+TGG 0.397433 1.3:+6257834 MS.gene051582:CDS
GCCCAAAGTTGGGTATGGTT+TGG 0.398316 1.3:+6257718 MS.gene051582:CDS
GGATTTGGTTCCAAGGAATA+GGG 0.400811 1.3:+6258021 MS.gene051582:CDS
GGGTGTAGAAGTGGAGTGTA+TGG 0.406342 1.3:-6257142 None:intergenic
ACAGCATTGGATACGAGGTT+GGG 0.406801 1.3:-6257195 None:intergenic
GCCAAACCATACCCAACTTT+GGG 0.407117 1.3:-6257719 None:intergenic
AGGGAGGCATGCTGATTTGT+GGG 0.407902 1.3:+6257958 MS.gene051582:CDS
TTTCATTCATCTTCCTCAAT+GGG 0.409031 1.3:+6257424 MS.gene051582:CDS
AAAACAAAGTCTGTGTCCTC+TGG 0.411202 1.3:+6257285 MS.gene051582:CDS
CGGCGAGGGATTTGAGAGAT+AGG 0.412332 1.3:-6257352 None:intergenic
AGGCTAGAGAGGCCAATTTA+GGG 0.414886 1.3:+6257903 MS.gene051582:CDS
AGCCAAACCATACCCAACTT+TGG 0.420939 1.3:-6257720 None:intergenic
GAGGGAGAGGAAGGAGTGGG+GGG 0.421552 1.3:-6257162 None:intergenic
GAACCGTTTGAATTCTTTGA+AGG 0.425604 1.3:+6257616 MS.gene051582:CDS
CTTCGGAGTTGAGGAGAGCC+GGG 0.432660 1.3:+6257741 MS.gene051582:CDS
TAAGCCTCAAGCTGCTGATT+GGG 0.436038 1.3:+6257787 MS.gene051582:CDS
GTTTGAGGGAGAGGAAGGAG+TGG 0.437067 1.3:-6257166 None:intergenic
ATAAGCCTCAAGCTGCTGAT+TGG 0.442172 1.3:+6257786 MS.gene051582:CDS
GCTTCGGAGTTGAGGAGAGC+CGG 0.446052 1.3:+6257740 MS.gene051582:CDS
TAGGGAGGCATGCTGATTTG+TGG 0.446184 1.3:+6257957 MS.gene051582:CDS
TCCCCTTCAAAGAATTCAAA+CGG 0.451680 1.3:-6257619 None:intergenic
ACAGAACATACGTAAGGTTC+AGG 0.453549 1.3:-6257512 None:intergenic
AGTTGGGTATGGTTTGGCTT+CGG 0.460925 1.3:+6257724 MS.gene051582:CDS
AGAGATAGGGCGGCGTTGTA+GGG 0.461281 1.3:-6257338 None:intergenic
TGTAGAAGTGGAGTGTATGG+AGG 0.462364 1.3:-6257139 None:intergenic
GGTTACGTCGCCGAAGCGTT+CGG 0.469287 1.3:-6257372 None:intergenic
TTTGAGGGAGAGGAAGGAGT+GGG 0.471205 1.3:-6257165 None:intergenic
TTGAAGCCCAAAGTTGGGTA+TGG 0.495748 1.3:+6257713 MS.gene051582:CDS
AACAGCATTGGATACGAGGT+TGG 0.496049 1.3:-6257196 None:intergenic
TGTTGTTGGGGATGTTGATA+GGG 0.498608 1.3:+6257931 MS.gene051582:CDS
GAAGTATAATGATGCTGTTA+GGG 0.500181 1.3:+6257685 MS.gene051582:CDS
AGCGTGGCGGTTGGCGTAAG+CGG 0.500548 1.3:-6257402 None:intergenic
TCTGATGAAGAAGATGAAGA+TGG 0.507897 1.3:+6258169 MS.gene051582:CDS
CTGATGAAGAAGATGAAGAT+GGG 0.509060 1.3:+6258170 MS.gene051582:CDS
AAATCCCTCGCCGAACGCTT+CGG 0.510847 1.3:+6257362 MS.gene051582:CDS
TGATGATACCTTTACGTTCG+AGG 0.511617 1.3:-6257484 None:intergenic
CTCACTAAAATCGGAATCAT+CGG 0.517860 1.3:-6257870 None:intergenic
CTCGACTTCCTCGAACGTAA+AGG 0.522822 1.3:+6257476 MS.gene051582:CDS
CGCGTGGTGGTTTGTTGTCG+AGG 0.523493 1.3:-6257310 None:intergenic
GTCGCCGAAGCGTTCGGCGA+GGG 0.529218 1.3:-6257366 None:intergenic
CGGATATGGATTTGGTTCCA+AGG 0.531339 1.3:+6258014 MS.gene051582:CDS
CCGTGGAATGCTGTTGAGAA+TGG 0.533034 1.3:+6257983 MS.gene051582:CDS
CAGCATTGGATACGAGGTTG+GGG 0.537610 1.3:-6257194 None:intergenic
TTTAGGGACTGTTGTTGTTG+GGG 0.539520 1.3:+6257919 MS.gene051582:CDS
TGTTGTTGTTGGAACAGCAT+TGG 0.539996 1.3:-6257208 None:intergenic
AACCGTTTGAATTCTTTGAA+GGG 0.544942 1.3:+6257617 MS.gene051582:CDS
GGCGAGGGATTTGAGAGATA+GGG 0.558230 1.3:-6257351 None:intergenic
TGTTGAGAATGGTGAGGTTA+CGG 0.558545 1.3:+6257994 MS.gene051582:CDS
AAACAAAGTCTGTGTCCTCT+GGG 0.558785 1.3:+6257286 MS.gene051582:CDS
GTAGAAGTGGAGTGTATGGA+GGG 0.566536 1.3:-6257138 None:intergenic
ATGAATGAAAGCGTGGCGGT+TGG 0.572273 1.3:-6257411 None:intergenic
ATTCTTTGAAGGGGAAGAAG+AGG 0.573313 1.3:+6257627 MS.gene051582:CDS
AAAGCCCAATCAGCAGCTTG+AGG 0.574075 1.3:-6257791 None:intergenic
CGTTGATTGAGAACCCATTG+AGG 0.577603 1.3:-6257437 None:intergenic
CTTTACGTTCGAGGAAGTCG+AGG 0.579347 1.3:-6257475 None:intergenic
GATGTTGAGGAAGGCTAGAG+AGG 0.579429 1.3:+6257892 MS.gene051582:CDS
TGATGCATTCTATGAGTAGA+GGG 0.580660 1.3:+6257825 MS.gene051582:CDS
ATGGTTTGGCTTCGGAGTTG+AGG 0.585237 1.3:+6257732 MS.gene051582:CDS
AGCTTGAGGCTTATCCTCCA+CGG 0.593303 1.3:-6257777 None:intergenic
ACCGTTTGAATTCTTTGAAG+GGG 0.594952 1.3:+6257618 MS.gene051582:CDS
ATGATGCATTCTATGAGTAG+AGG 0.597154 1.3:+6257824 MS.gene051582:CDS
TTGGAACAGCATTGGATACG+AGG 0.599990 1.3:-6257200 None:intergenic
GATAGGGCGGCGTTGTAGGG+TGG 0.601999 1.3:-6257335 None:intergenic
AACAACAACGACGACAACAA+TGG 0.614821 1.3:+6258063 MS.gene051582:CDS
GTTGGCGTAAGCGGAGATGT+CGG 0.615842 1.3:-6257393 None:intergenic
CCATTCTCAACAGCATTCCA+CGG 0.619851 1.3:-6257983 None:intergenic
CAACATCATCGACATCGACA+TGG 0.624349 1.3:+6257229 MS.gene051582:CDS
TTGTAGGGTGGTCCGCGTGG+TGG 0.626810 1.3:-6257323 None:intergenic
CGTCGCCGAAGCGTTCGGCG+AGG 0.629394 1.3:-6257367 None:intergenic
CCACAGACAGAACATACGTA+AGG 0.633305 1.3:-6257518 None:intergenic
TTCGGAGTTGAGGAGAGCCG+GGG 0.646906 1.3:+6257742 MS.gene051582:CDS
ATGTTGATAGGGCTTTAGGG+AGG 0.654086 1.3:+6257942 MS.gene051582:CDS
GAACATACGTAAGGTTCAGG+TGG 0.654767 1.3:-6257509 None:intergenic
GTTGGAGTATAGTGATGATG+AGG 0.656125 1.3:+6258144 MS.gene051582:CDS
GAGGAAGATGAATGAAAGCG+TGG 0.667208 1.3:-6257418 None:intergenic
CCTTACGTATGTTCTGTCTG+TGG 0.667545 1.3:+6257518 MS.gene051582:CDS
ATGCTGATTTGTGGGTGCCG+TGG 0.676696 1.3:+6257966 MS.gene051582:CDS
CGGGGTGTTTGTGAAGACCG+TGG 0.682036 1.3:+6257760 MS.gene051582:CDS
TATAAGGAGAGATATGTGAG+TGG 0.683928 1.3:+6257656 MS.gene051582:CDS
GCGTTGTAGGGTGGTCCGCG+TGG 0.689378 1.3:-6257326 None:intergenic
GTTTGTTGTCGAGGTCCCAG+AGG 0.689800 1.3:-6257301 None:intergenic
CACGGTCTTCACAAACACCC+CGG 0.699093 1.3:-6257759 None:intergenic
CTCGACAACAAACCACCACG+CGG 0.706944 1.3:+6257311 MS.gene051582:CDS
GAGGGATTTGAGAGATAGGG+CGG 0.708759 1.3:-6257348 None:intergenic
GAATGCTGTTGAGAATGGTG+AGG 0.763448 1.3:+6257988 MS.gene051582:CDS
GGTGTTTGTGAAGACCGTGG+AGG 0.763606 1.3:+6257763 MS.gene051582:CDS
GAAGATGAATGAAAGCGTGG+CGG 0.793373 1.3:-6257415 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATGGAAGAAGATTTTATGT+TGG + chr1.3:6258126-6258145 MS.gene051582:CDS 25.0%
!!! TTTGTTTTGTTTTTGTTCGT+AGG - chr1.3:6257273-6257292 None:intergenic 25.0%
AACCGTTTGAATTCTTTGAA+GGG + chr1.3:6257617-6257636 MS.gene051582:CDS 30.0%
GAAGTATAATGATGCTGTTA+GGG + chr1.3:6257685-6257704 MS.gene051582:CDS 30.0%
TTTCATTCATCTTCCTCAAT+GGG + chr1.3:6257424-6257443 MS.gene051582:CDS 30.0%
! AGAAGTATAATGATGCTGTT+AGG + chr1.3:6257684-6257703 MS.gene051582:CDS 30.0%
!!! GATGTGTTGTTTTTTCATGA+GGG + chr1.3:6258097-6258116 MS.gene051582:CDS 30.0%
!!! TGATGTGTTGTTTTTTCATG+AGG + chr1.3:6258096-6258115 MS.gene051582:CDS 30.0%
AACAACAACAGTCCCTAAAT+TGG - chr1.3:6257918-6257937 None:intergenic 35.0%
AATTTAGGGACTGTTGTTGT+TGG + chr1.3:6257917-6257936 MS.gene051582:CDS 35.0%
ATGATGCATTCTATGAGTAG+AGG + chr1.3:6257824-6257843 MS.gene051582:CDS 35.0%
CCTCAACATCTCACTAAAAT+CGG - chr1.3:6257882-6257901 None:intergenic 35.0%
CTCACTAAAATCGGAATCAT+CGG - chr1.3:6257873-6257892 None:intergenic 35.0%
CTGATGAAGAAGATGAAGAT+GGG + chr1.3:6258170-6258189 MS.gene051582:CDS 35.0%
CTTTCATTCATCTTCCTCAA+TGG + chr1.3:6257423-6257442 MS.gene051582:CDS 35.0%
GAACCGTTTGAATTCTTTGA+AGG + chr1.3:6257616-6257635 MS.gene051582:CDS 35.0%
GACATGGTAAAAACCAAACA+AGG + chr1.3:6257245-6257264 MS.gene051582:CDS 35.0%
TATAAGGAGAGATATGTGAG+TGG + chr1.3:6257656-6257675 MS.gene051582:CDS 35.0%
TCCCCTTCAAAGAATTCAAA+CGG - chr1.3:6257622-6257641 None:intergenic 35.0%
TCTGATGAAGAAGATGAAGA+TGG + chr1.3:6258169-6258188 MS.gene051582:CDS 35.0%
TGATGCATTCTATGAGTAGA+GGG + chr1.3:6257825-6257844 MS.gene051582:CDS 35.0%
! ACCGTTTGAATTCTTTGAAG+GGG + chr1.3:6257618-6257637 MS.gene051582:CDS 35.0%
! ACGACAACAATGGATGATTT+TGG + chr1.3:6258073-6258092 MS.gene051582:CDS 35.0%
! ATTTAGGGACTGTTGTTGTT+GGG + chr1.3:6257918-6257937 MS.gene051582:CDS 35.0%
! GAAGAAGAGGCAAAAGTATA+AGG + chr1.3:6257640-6257659 MS.gene051582:CDS 35.0%
! TTTTAGTGAGATGTTGAGGA+AGG + chr1.3:6257883-6257902 MS.gene051582:CDS 35.0%
!! AGGGATTGATTGGTTGTTTT+TGG + chr1.3:6257844-6257863 MS.gene051582:CDS 35.0%
!!! AGATTTTGAAGCCCAAAGTT+GGG + chr1.3:6257708-6257727 MS.gene051582:CDS 35.0%
AAAACAAAGTCTGTGTCCTC+TGG + chr1.3:6257285-6257304 MS.gene051582:CDS 40.0%
AAACAAAGTCTGTGTCCTCT+GGG + chr1.3:6257286-6257305 MS.gene051582:CDS 40.0%
AACAACAACGACGACAACAA+TGG + chr1.3:6258063-6258082 MS.gene051582:CDS 40.0%
ACAGAACATACGTAAGGTTC+AGG - chr1.3:6257515-6257534 None:intergenic 40.0%
CTATGAGTAGAGGGATTGAT+TGG + chr1.3:6257834-6257853 MS.gene051582:CDS 40.0%
CTTCTTCTATCCCTATTCCT+TGG - chr1.3:6258034-6258053 None:intergenic 40.0%
TGAGGTTACGGATATGGATT+TGG + chr1.3:6258006-6258025 MS.gene051582:CDS 40.0%
TGATGATACCTTTACGTTCG+AGG - chr1.3:6257487-6257506 None:intergenic 40.0%
TGTTGAGAATGGTGAGGTTA+CGG + chr1.3:6257994-6258013 MS.gene051582:CDS 40.0%
TGTTGTTGGGGATGTTGATA+GGG + chr1.3:6257931-6257950 MS.gene051582:CDS 40.0%
TTGTTCGTAGGTTCCTTGTT+TGG - chr1.3:6257261-6257280 None:intergenic 40.0%
! AGTCGAGGTTTTTACGTTCA+CGG - chr1.3:6257463-6257482 None:intergenic 40.0%
! ATTCTTTGAAGGGGAAGAAG+AGG + chr1.3:6257627-6257646 MS.gene051582:CDS 40.0%
! GGATTTGGTTCCAAGGAATA+GGG + chr1.3:6258021-6258040 MS.gene051582:CDS 40.0%
! GTCGATGATGTTGTTGTTGT+TGG - chr1.3:6257222-6257241 None:intergenic 40.0%
! GTTGGAGTATAGTGATGATG+AGG + chr1.3:6258144-6258163 MS.gene051582:CDS 40.0%
! TGGATTTGGTTCCAAGGAAT+AGG + chr1.3:6258020-6258039 MS.gene051582:CDS 40.0%
! TGTTGTTGTTGGAACAGCAT+TGG - chr1.3:6257211-6257230 None:intergenic 40.0%
! TTGTTGTTGGGGATGTTGAT+AGG + chr1.3:6257930-6257949 MS.gene051582:CDS 40.0%
! TTTAGGGACTGTTGTTGTTG+GGG + chr1.3:6257919-6257938 MS.gene051582:CDS 40.0%
!! CCGATTTTAGTGAGATGTTG+AGG + chr1.3:6257879-6257898 MS.gene051582:CDS 40.0%
!!! GAGATTTTGAAGCCCAAAGT+TGG + chr1.3:6257707-6257726 MS.gene051582:CDS 40.0%
AAGGCTAGAGAGGCCAATTT+AGG + chr1.3:6257902-6257921 MS.gene051582:CDS 45.0%
AGCCAAACCATACCCAACTT+TGG - chr1.3:6257723-6257742 None:intergenic 45.0%
AGGCTAGAGAGGCCAATTTA+GGG + chr1.3:6257903-6257922 MS.gene051582:CDS 45.0%
ATAAGCCTCAAGCTGCTGAT+TGG + chr1.3:6257786-6257805 MS.gene051582:CDS 45.0%
CAACATCATCGACATCGACA+TGG + chr1.3:6257229-6257248 MS.gene051582:CDS 45.0%
CCACAGACAGAACATACGTA+AGG - chr1.3:6257521-6257540 None:intergenic 45.0%
CCATTCTCAACAGCATTCCA+CGG - chr1.3:6257986-6258005 None:intergenic 45.0%
CCTTACGTATGTTCTGTCTG+TGG + chr1.3:6257518-6257537 MS.gene051582:CDS 45.0%
GAACATACGTAAGGTTCAGG+TGG - chr1.3:6257512-6257531 None:intergenic 45.0%
GAATGCTGTTGAGAATGGTG+AGG + chr1.3:6257988-6258007 MS.gene051582:CDS 45.0%
GAATGGTGAGGTTACGGATA+TGG + chr1.3:6258000-6258019 MS.gene051582:CDS 45.0%
GAGGAAGATGAATGAAAGCG+TGG - chr1.3:6257421-6257440 None:intergenic 45.0%
GCCAAACCATACCCAACTTT+GGG - chr1.3:6257722-6257741 None:intergenic 45.0%
GTAGAAGTGGAGTGTATGGA+GGG - chr1.3:6257141-6257160 None:intergenic 45.0%
TGTAGAAGTGGAGTGTATGG+AGG - chr1.3:6257142-6257161 None:intergenic 45.0%
TTGAAGCCCAAAGTTGGGTA+TGG + chr1.3:6257713-6257732 MS.gene051582:CDS 45.0%
! AACAGCATTGGATACGAGGT+TGG - chr1.3:6257199-6257218 None:intergenic 45.0%
! ACAGCATTGGATACGAGGTT+GGG - chr1.3:6257198-6257217 None:intergenic 45.0%
! AGTTGGGTATGGTTTGGCTT+CGG + chr1.3:6257724-6257743 MS.gene051582:CDS 45.0%
! CGGATATGGATTTGGTTCCA+AGG + chr1.3:6258014-6258033 MS.gene051582:CDS 45.0%
! CGTTGATTGAGAACCCATTG+AGG - chr1.3:6257440-6257459 None:intergenic 45.0%
! GAAGATGAATGAAAGCGTGG+CGG - chr1.3:6257418-6257437 None:intergenic 45.0%
! GGGATGTTGATAGGGCTTTA+GGG + chr1.3:6257939-6257958 MS.gene051582:CDS 45.0%
! TAAGCCTCAAGCTGCTGATT+GGG + chr1.3:6257787-6257806 MS.gene051582:CDS 45.0%
! TTGGAACAGCATTGGATACG+AGG - chr1.3:6257203-6257222 None:intergenic 45.0%
! TTTTCATGAGGGCGAGGAAA+TGG + chr1.3:6258108-6258127 MS.gene051582:CDS 45.0%
!! ATGTTGATAGGGCTTTAGGG+AGG + chr1.3:6257942-6257961 MS.gene051582:CDS 45.0%
!!! AGGTTGGGGTTTTGGTTTGA+GGG - chr1.3:6257183-6257202 None:intergenic 45.0%
!!! GTTGTTTTTTCATGAGGGCG+AGG + chr1.3:6258102-6258121 MS.gene051582:CDS 45.0%
!!! TTTTGGTTTGAGGGAGAGGA+AGG - chr1.3:6257174-6257193 None:intergenic 45.0%
AAAGCCCAATCAGCAGCTTG+AGG - chr1.3:6257794-6257813 None:intergenic 50.0%
AGCTTGAGGCTTATCCTCCA+CGG - chr1.3:6257780-6257799 None:intergenic 50.0%
CCGTGGAATGCTGTTGAGAA+TGG + chr1.3:6257983-6258002 MS.gene051582:CDS 50.0%
CTCGACTTCCTCGAACGTAA+AGG + chr1.3:6257476-6257495 MS.gene051582:CDS 50.0%
CTTTACGTTCGAGGAAGTCG+AGG - chr1.3:6257478-6257497 None:intergenic 50.0%
GAGGGATTTGAGAGATAGGG+CGG - chr1.3:6257351-6257370 None:intergenic 50.0%
GATGTTGAGGAAGGCTAGAG+AGG + chr1.3:6257892-6257911 MS.gene051582:CDS 50.0%
GCCCAAAGTTGGGTATGGTT+TGG + chr1.3:6257718-6257737 MS.gene051582:CDS 50.0%
GGCGAGGGATTTGAGAGATA+GGG - chr1.3:6257354-6257373 None:intergenic 50.0%
GGGTGTAGAAGTGGAGTGTA+TGG - chr1.3:6257145-6257164 None:intergenic 50.0%
TTTGAGGGAGAGGAAGGAGT+GGG - chr1.3:6257168-6257187 None:intergenic 50.0%
! ATGAATGAAAGCGTGGCGGT+TGG - chr1.3:6257414-6257433 None:intergenic 50.0%
! ATGGTTTGGCTTCGGAGTTG+AGG + chr1.3:6257732-6257751 MS.gene051582:CDS 50.0%
! CAGCATTGGATACGAGGTTG+GGG - chr1.3:6257197-6257216 None:intergenic 50.0%
! GGGGATGTTGATAGGGCTTT+AGG + chr1.3:6257938-6257957 MS.gene051582:CDS 50.0%
! TGGATACGAGGTTGGGGTTT+TGG - chr1.3:6257191-6257210 None:intergenic 50.0%
!! AGGGAGGCATGCTGATTTGT+GGG + chr1.3:6257958-6257977 MS.gene051582:CDS 50.0%
!! TAGGGAGGCATGCTGATTTG+TGG + chr1.3:6257957-6257976 MS.gene051582:CDS 50.0%
!!! GAGGTTGGGGTTTTGGTTTG+AGG - chr1.3:6257184-6257203 None:intergenic 50.0%
AAATCCCTCGCCGAACGCTT+CGG + chr1.3:6257362-6257381 MS.gene051582:CDS 55.0%
AGAGATAGGGCGGCGTTGTA+GGG - chr1.3:6257341-6257360 None:intergenic 55.0%
CACGGTCTTCACAAACACCC+CGG - chr1.3:6257762-6257781 None:intergenic 55.0%
CGGCGAGGGATTTGAGAGAT+AGG - chr1.3:6257355-6257374 None:intergenic 55.0%
CTCGACAACAAACCACCACG+CGG + chr1.3:6257311-6257330 MS.gene051582:CDS 55.0%
GGTGTTTGTGAAGACCGTGG+AGG + chr1.3:6257763-6257782 MS.gene051582:CDS 55.0%
GTTGGCGTAAGCGGAGATGT+CGG - chr1.3:6257396-6257415 None:intergenic 55.0%
GTTTGAGGGAGAGGAAGGAG+TGG - chr1.3:6257169-6257188 None:intergenic 55.0%
TTGAGGGAGAGGAAGGAGTG+GGG - chr1.3:6257167-6257186 None:intergenic 55.0%
!! ATGCTGATTTGTGGGTGCCG+TGG + chr1.3:6257966-6257985 MS.gene051582:CDS 55.0%
!! GTTTGTTGTCGAGGTCCCAG+AGG - chr1.3:6257304-6257323 None:intergenic 55.0%
!!! GGGGTTTTGGTTTGAGGGAG+AGG - chr1.3:6257178-6257197 None:intergenic 55.0%
CTTCGGAGTTGAGGAGAGCC+GGG + chr1.3:6257741-6257760 MS.gene051582:CDS 60.0%
GAGAGATAGGGCGGCGTTGT+AGG - chr1.3:6257342-6257361 None:intergenic 60.0%
GCTTCGGAGTTGAGGAGAGC+CGG + chr1.3:6257740-6257759 MS.gene051582:CDS 60.0%
TGAGGGAGAGGAAGGAGTGG+GGG - chr1.3:6257166-6257185 None:intergenic 60.0%
TTCGGAGTTGAGGAGAGCCG+GGG + chr1.3:6257742-6257761 MS.gene051582:CDS 60.0%
! AGGAGTGGGGGGTGTAGAAG+TGG - chr1.3:6257154-6257173 None:intergenic 60.0%
! CGGGGTGTTTGTGAAGACCG+TGG + chr1.3:6257760-6257779 MS.gene051582:CDS 60.0%
! GGTTACGTCGCCGAAGCGTT+CGG - chr1.3:6257375-6257394 None:intergenic 60.0%
!! CGCGTGGTGGTTTGTTGTCG+AGG - chr1.3:6257313-6257332 None:intergenic 60.0%
AGCGTGGCGGTTGGCGTAAG+CGG - chr1.3:6257405-6257424 None:intergenic 65.0%
GAGGGAGAGGAAGGAGTGGG+GGG - chr1.3:6257165-6257184 None:intergenic 65.0%
GATAGGGCGGCGTTGTAGGG+TGG - chr1.3:6257338-6257357 None:intergenic 65.0%
TTGTAGGGTGGTCCGCGTGG+TGG - chr1.3:6257326-6257345 None:intergenic 65.0%
GCGTTGTAGGGTGGTCCGCG+TGG - chr1.3:6257329-6257348 None:intergenic 70.0%
! GTCGCCGAAGCGTTCGGCGA+GGG - chr1.3:6257369-6257388 None:intergenic 70.0%
! CGTCGCCGAAGCGTTCGGCG+AGG - chr1.3:6257370-6257389 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 6257125 6258207 6257125 ID=MS.gene051582
chr1.3 mRNA 6257125 6258207 6257125 ID=MS.gene051582.t1;Parent=MS.gene051582
chr1.3 exon 6257125 6258207 6257125 ID=MS.gene051582.t1.exon1;Parent=MS.gene051582.t1
chr1.3 CDS 6257125 6258207 6257125 ID=cds.MS.gene051582.t1;Parent=MS.gene051582.t1
Gene Sequence

>MS.gene051582

ATGAATACTCTCTCCCTCCATACACTCCACTTCTACACCCCCCACTCCTTCCTCTCCCTCAAACCAAAACCCCAACCTCGTATCCAATGCTGTTCCAACAACAACAACATCATCGACATCGACATGGTAAAAACCAAACAAGGAACCTACGAACAAAAACAAAACAAAGTCTGTGTCCTCTGGGACCTCGACAACAAACCACCACGCGGACCACCCTACAACGCCGCCCTATCTCTCAAATCCCTCGCCGAACGCTTCGGCGACGTAACCGACATCTCCGCTTACGCCAACCGCCACGCTTTCATTCATCTTCCTCAATGGGTTCTCAATCAACGCCGTGAACGTAAAAACCTCGACTTCCTCGAACGTAAAGGTATCATCAATCCACCTGAACCTTACGTATGTTCTGTCTGTGGTAGAAAATGTAAAACTAACGTAGATCTTAAGAAACACTTTAAGCAGCTTCATCAACGTGAGAGACAGAAGAAGCTGAACCGTTTGAATTCTTTGAAGGGGAAGAAGAGGCAAAAGTATAAGGAGAGATATGTGAGTGGTGATGAGAAGTATAATGATGCTGTTAGGGAGATTTTGAAGCCCAAAGTTGGGTATGGTTTGGCTTCGGAGTTGAGGAGAGCCGGGGTGTTTGTGAAGACCGTGGAGGATAAGCCTCAAGCTGCTGATTGGGCTTTGAAGAAGCAGATGATGCATTCTATGAGTAGAGGGATTGATTGGTTGTTTTTGGTTTCCGATGATTCCGATTTTAGTGAGATGTTGAGGAAGGCTAGAGAGGCCAATTTAGGGACTGTTGTTGTTGGGGATGTTGATAGGGCTTTAGGGAGGCATGCTGATTTGTGGGTGCCGTGGAATGCTGTTGAGAATGGTGAGGTTACGGATATGGATTTGGTTCCAAGGAATAGGGATAGAAGAAGAACATCAAGAACAACAACGACGACAACAATGGATGATTTTGGTGATGTGTTGTTTTTTCATGAGGGCGAGGAAATGGAAGAAGATTTTATGTTGGAGTATAGTGATGATGAGGATTCTGATGAAGAAGATGAAGATGGGTTTTATATTTATTGA

Protein sequence

>MS.gene051582.t1

MNTLSLHTLHFYTPHSFLSLKPKPQPRIQCCSNNNNIIDIDMVKTKQGTYEQKQNKVCVLWDLDNKPPRGPPYNAALSLKSLAERFGDVTDISAYANRHAFIHLPQWVLNQRRERKNLDFLERKGIINPPEPYVCSVCGRKCKTNVDLKKHFKQLHQRERQKKLNRLNSLKGKKRQKYKERYVSGDEKYNDAVREILKPKVGYGLASELRRAGVFVKTVEDKPQAADWALKKQMMHSMSRGIDWLFLVSDDSDFSEMLRKAREANLGTVVVGDVDRALGRHADLWVPWNAVENGEVTDMDLVPRNRDRRRTSRTTTTTTMDDFGDVLFFHEGEEMEEDFMLEYSDDEDSDEEDEDGFYIY