Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68335.t1 | XP_003613302.2 | 96.5 | 199 | 7 | 0 | 1 | 199 | 132 | 330 | 7.50E-105 | 389.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68335.t1 | G7K2T4 | 96.5 | 199 | 7 | 0 | 1 | 199 | 101 | 299 | 5.4e-105 | 389.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene68335.t1 | TR | GNAT |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057331 | MS.gene68335 | 0.805436 | 1.34E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68335.t1 | MTR_5g035060 | 96.482 | 199 | 7 | 0 | 1 | 199 | 101 | 299 | 9.06e-145 | 405 |
| MS.gene68335.t1 | MTR_5g035040 | 69.849 | 199 | 31 | 3 | 1 | 199 | 207 | 376 | 4.41e-91 | 271 |
| MS.gene68335.t1 | MTR_5g035050 | 89.773 | 88 | 9 | 0 | 112 | 199 | 29 | 116 | 3.95e-54 | 168 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68335.t1 | AT1G24040 | 63.684 | 190 | 65 | 3 | 1 | 187 | 114 | 302 | 1.14e-83 | 251 |
| MS.gene68335.t1 | AT1G24040 | 63.684 | 190 | 65 | 3 | 1 | 187 | 114 | 302 | 1.14e-83 | 251 |
| MS.gene68335.t1 | AT1G24040 | 63.684 | 190 | 65 | 3 | 1 | 187 | 114 | 302 | 1.14e-83 | 251 |
Find 34 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAGCCTTATATTTGTAATA+TGG | 0.284831 | 5.2:-25582630 | MS.gene68335:CDS |
| TATAGAGGAAGTGGTGTTAA+TGG | 0.290750 | 5.2:-25582755 | MS.gene68335:CDS |
| GGCTTATCTTTCGGTGGATC+CGG | 0.329893 | 5.2:+25582647 | None:intergenic |
| CAAATATAAGGCTTATCTTT+CGG | 0.347970 | 5.2:+25582638 | None:intergenic |
| GTTTCCGAAAGGGTATATTA+AGG | 0.368887 | 5.2:-25582855 | MS.gene68335:CDS |
| ACAGCCATATTACAAATATA+AGG | 0.375127 | 5.2:+25582626 | None:intergenic |
| AACACCTTAATATACCCTTT+CGG | 0.432789 | 5.2:+25582851 | None:intergenic |
| TCTCCCTTCAGGAGGGGCAT+TGG | 0.444220 | 5.2:-25579891 | MS.gene68335:intron |
| GAAGAGGAAATGCAGTTGGC+TGG | 0.454362 | 5.2:-25582722 | MS.gene68335:CDS |
| GAGGAGTTTGATGCCGCATA+TGG | 0.462290 | 5.2:-25582795 | MS.gene68335:CDS |
| CAAGCGAGGAACTGATTTCT+CGG | 0.465423 | 5.2:-25579851 | MS.gene68335:CDS |
| TGCGTCTCTGCAACAACAGC+AGG | 0.469429 | 5.2:+25579718 | None:intergenic |
| CGCTATTGTATGCTTGCTTG+CGG | 0.471189 | 5.2:-25582900 | MS.gene68335:CDS |
| ATTTCTCGGATGAGTTCATC+AGG | 0.474442 | 5.2:-25579837 | MS.gene68335:CDS |
| CATGGCACGTTTGTTTCTGA+AGG | 0.497482 | 5.2:+25579657 | None:intergenic |
| CTGTGGATAAATCTCTTAGA+AGG | 0.499813 | 5.2:-25582607 | MS.gene68335:intron |
| TAATTCTACTCTTCCTTCGC+CGG | 0.500339 | 5.2:-25582666 | MS.gene68335:CDS |
| CCTTCAGGAGGGGCATTGGA+TGG | 0.505384 | 5.2:-25579887 | MS.gene68335:intron |
| CATTGGATGGCATCTTCTAA+AGG | 0.517341 | 5.2:-25579874 | MS.gene68335:CDS |
| TCTTTCGGTGGATCCGGCGA+AGG | 0.517466 | 5.2:+25582653 | None:intergenic |
| TGAAACAGTATTTGATTGAA+CGG | 0.524045 | 5.2:-25582817 | MS.gene68335:CDS |
| TTATATTTGTAATATGGCTG+TGG | 0.528854 | 5.2:-25582624 | MS.gene68335:CDS |
| AAGAGGAAATGCAGTTGGCT+GGG | 0.542657 | 5.2:-25582721 | MS.gene68335:CDS |
| AATCGATGATGTTTCCGAAA+GGG | 0.568903 | 5.2:-25582865 | MS.gene68335:CDS |
| GCAATCAAAGTCGCCATATG+CGG | 0.587969 | 5.2:+25582782 | None:intergenic |
| ATATAAGGCTTATCTTTCGG+TGG | 0.596813 | 5.2:+25582641 | None:intergenic |
| GGAAGTGGTGTTAATGGTGA+TGG | 0.604582 | 5.2:-25582749 | MS.gene68335:CDS |
| TACTCATAGTCATTAGAACA+TGG | 0.612730 | 5.2:+25579639 | None:intergenic |
| TCTGAAGGCATACTTAAGAG+AGG | 0.626310 | 5.2:+25579672 | None:intergenic |
| TAATGGTGATGGTGAAGAAG+AGG | 0.637013 | 5.2:-25582738 | MS.gene68335:CDS |
| GAATCGATGATGTTTCCGAA+AGG | 0.637311 | 5.2:-25582866 | MS.gene68335:CDS |
| TGAAGAAGAGGAAATGCAGT+TGG | 0.653928 | 5.2:-25582726 | MS.gene68335:CDS |
| GCATCTTCTAAAGGCAAGCG+AGG | 0.659909 | 5.2:-25579865 | MS.gene68335:CDS |
| AACAGTATTTGATTGAACGG+AGG | 0.685549 | 5.2:-25582814 | MS.gene68335:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAAATAATAAATAGTTTA+CGG | - | chr5.2:25581829-25581848 | MS.gene68335:intron | 10.0% |
| !!! | AAATGTAATTAATTTTGTAT+AGG | - | chr5.2:25581733-25581752 | MS.gene68335:intron | 10.0% |
| !! | AAAGAGTAATAAATAGTTAA+TGG | + | chr5.2:25582011-25582030 | None:intergenic | 15.0% |
| !! | AAATAACATTAATGTTTCAT+TGG | + | chr5.2:25581977-25581996 | None:intergenic | 15.0% |
| !! | AAATGTAATCAATTATGTAT+TGG | + | chr5.2:25582109-25582128 | None:intergenic | 15.0% |
| !! | ATGTTATAATAGTTATAACA+AGG | + | chr5.2:25582346-25582365 | None:intergenic | 15.0% |
| !! | TAAAAATTAGTTAATGTGTT+TGG | + | chr5.2:25580601-25580620 | None:intergenic | 15.0% |
| !! | TAAATAGTTAATGGTATAAA+AGG | + | chr5.2:25582002-25582021 | None:intergenic | 15.0% |
| !! | TATCAAATTTGCAAAAAATT+TGG | - | chr5.2:25580770-25580789 | MS.gene68335:intron | 15.0% |
| !! | TTTCCATTATTTAAAGATTA+AGG | - | chr5.2:25581026-25581045 | MS.gene68335:intron | 15.0% |
| !!! | AAAAATTTGGACTATTTTAA+CGG | - | chr5.2:25580783-25580802 | MS.gene68335:intron | 15.0% |
| !! | AAATCAACTATACATTCTAT+TGG | + | chr5.2:25580060-25580079 | None:intergenic | 20.0% |
| !! | ACAAAATTATCCTTCATTAA+CGG | - | chr5.2:25581776-25581795 | MS.gene68335:intron | 20.0% |
| !! | ACCAAAATGACTAATAATTT+GGG | + | chr5.2:25581695-25581714 | None:intergenic | 20.0% |
| !! | ACCAATATAATACATATTCT+GGG | - | chr5.2:25580958-25580977 | MS.gene68335:intron | 20.0% |
| !! | AGCTATATTTAATATCAAAG+AGG | + | chr5.2:25581255-25581274 | None:intergenic | 20.0% |
| !! | ATATAGCTTATACATAAACA+TGG | - | chr5.2:25581267-25581286 | MS.gene68335:intron | 20.0% |
| !! | ATGCTAAAAGTTACTATTAT+AGG | + | chr5.2:25582486-25582505 | None:intergenic | 20.0% |
| !! | ATTTCTTAATCTGTGTAAAA+TGG | - | chr5.2:25582125-25582144 | MS.gene68335:intron | 20.0% |
| !! | CAACCTTAATCTTTAAATAA+TGG | + | chr5.2:25581032-25581051 | None:intergenic | 20.0% |
| !! | GAAATGCATAAATTTAACAA+TGG | + | chr5.2:25580545-25580564 | None:intergenic | 20.0% |
| !! | TGTAAAACGACATATAATTT+GGG | + | chr5.2:25581951-25581970 | None:intergenic | 20.0% |
| !! | TTGTAAAACGACATATAATT+TGG | + | chr5.2:25581952-25581971 | None:intergenic | 20.0% |
| !!! | AACATAAATTTCTAGTAATG+TGG | + | chr5.2:25580282-25580301 | None:intergenic | 20.0% |
| !!! | AGTTGACATATTGATTTTTT+TGG | + | chr5.2:25582274-25582293 | None:intergenic | 20.0% |
| !!! | GAGATTTCTTTTAATGTTTA+TGG | - | chr5.2:25579866-25579885 | MS.gene68335:CDS | 20.0% |
| !!! | GTTGACATATTGATTTTTTT+GGG | + | chr5.2:25582273-25582292 | None:intergenic | 20.0% |
| !!! | GTTGACATATTGATTTTTTT+TGG | + | chr5.2:25582273-25582292 | None:intergenic | 20.0% |
| !!! | TAAGCCTTATATTTGTAATA+TGG | - | chr5.2:25579928-25579947 | MS.gene68335:intron | 20.0% |
| ! | AAAACATTACACATGCTTTA+AGG | - | chr5.2:25579977-25579996 | MS.gene68335:intron | 25.0% |
| ! | ACAAAATTATCCTTCGTTAA+TGG | + | chr5.2:25582062-25582081 | None:intergenic | 25.0% |
| ! | ACAGCCATATTACAAATATA+AGG | + | chr5.2:25579935-25579954 | None:intergenic | 25.0% |
| ! | AGCTTAATTATTTATACTGC+AGG | + | chr5.2:25581611-25581630 | None:intergenic | 25.0% |
| ! | CAAATATAAGGCTTATCTTT+CGG | + | chr5.2:25579923-25579942 | None:intergenic | 25.0% |
| ! | GACCAAAATGACTAATAATT+TGG | + | chr5.2:25581696-25581715 | None:intergenic | 25.0% |
| ! | GACCAATATAATACATATTC+TGG | - | chr5.2:25580957-25580976 | MS.gene68335:intron | 25.0% |
| ! | GAGCTTATGTAAATAGTTTA+TGG | - | chr5.2:25581133-25581152 | MS.gene68335:intron | 25.0% |
| ! | GTCAAAACGACTTATAATTT+GGG | - | chr5.2:25582147-25582166 | MS.gene68335:intron | 25.0% |
| ! | TAAATAGTTTACGGTATAGT+AGG | - | chr5.2:25581838-25581857 | MS.gene68335:intron | 25.0% |
| ! | TAATGAGTTAGATCGAAATA+GGG | - | chr5.2:25580448-25580467 | MS.gene68335:intron | 25.0% |
| ! | TCCCAGAATATGTATTATAT+TGG | + | chr5.2:25580962-25580981 | None:intergenic | 25.0% |
| ! | TGAAACAGTATTTGATTGAA+CGG | - | chr5.2:25579741-25579760 | MS.gene68335:CDS | 25.0% |
| ! | TGACATAGTAAATGAATATG+TGG | + | chr5.2:25580679-25580698 | None:intergenic | 25.0% |
| ! | TTAATGAGTTAGATCGAAAT+AGG | - | chr5.2:25580447-25580466 | MS.gene68335:intron | 25.0% |
| ! | TTATATTTGTAATATGGCTG+TGG | - | chr5.2:25579934-25579953 | MS.gene68335:intron | 25.0% |
| ! | TTATCAGAGAAATAAGTTCA+GGG | + | chr5.2:25580903-25580922 | None:intergenic | 25.0% |
| ! | TTTATCAGAGAAATAAGTTC+AGG | + | chr5.2:25580904-25580923 | None:intergenic | 25.0% |
| !! | AGCTTAAAACAAGTTGAAAT+TGG | + | chr5.2:25581171-25581190 | None:intergenic | 25.0% |
| !! | GAGAGTACATTATTACAATT+TGG | + | chr5.2:25581657-25581676 | None:intergenic | 25.0% |
| !! | GCTTTTGTATACATGTTAAA+TGG | + | chr5.2:25582784-25582803 | None:intergenic | 25.0% |
| !! | TACAATTTGGAATTCATTGA+TGG | + | chr5.2:25581644-25581663 | None:intergenic | 25.0% |
| !! | TCCCAAATTATTAGTCATTT+TGG | - | chr5.2:25581691-25581710 | MS.gene68335:intron | 25.0% |
| !! | TTGCATTTGTTGGATTAATT+TGG | - | chr5.2:25580006-25580025 | MS.gene68335:intron | 25.0% |
| !!! | AGGTTAAGTAGGATATTTTT+TGG | - | chr5.2:25581425-25581444 | MS.gene68335:intron | 25.0% |
| !!! | AGTTGATTTGAAGAATCAAT+AGG | - | chr5.2:25580071-25580090 | MS.gene68335:intron | 25.0% |
| !!! | GAAAGTATTTAACACTAACA+AGG | + | chr5.2:25581468-25581487 | None:intergenic | 25.0% |
| !!! | GGTTAAGTAGGATATTTTTT+GGG | - | chr5.2:25581426-25581445 | MS.gene68335:intron | 25.0% |
| !!! | GTTGATTTGAAGAATCAATA+GGG | - | chr5.2:25580072-25580091 | MS.gene68335:intron | 25.0% |
| !!! | TAATTTTTTACTCTTCTGCT+AGG | - | chr5.2:25581405-25581424 | MS.gene68335:intron | 25.0% |
| !!! | TTTTTTTTTACCTTTTCCTG+TGG | - | chr5.2:25582424-25582443 | MS.gene68335:intron | 25.0% |
| AAACGACTTATAATTTGGGA+CGG | - | chr5.2:25582151-25582170 | MS.gene68335:intron | 30.0% | |
| AACACCTTAATATACCCTTT+CGG | + | chr5.2:25579710-25579729 | None:intergenic | 30.0% | |
| AAGCGATTTATAATTTGGGA+CGG | + | chr5.2:25581912-25581931 | None:intergenic | 30.0% | |
| AAGCTAGAACTATTAGAAGT+GGG | - | chr5.2:25581351-25581370 | MS.gene68335:intron | 30.0% | |
| AAGGAAAGTAAGTCAAATAG+AGG | - | chr5.2:25580370-25580389 | MS.gene68335:intron | 30.0% | |
| AAGTAAGTCAAATAGAGGAT+AGG | - | chr5.2:25580375-25580394 | MS.gene68335:intron | 30.0% | |
| AGATACTTGAGCTTATCTAT+TGG | - | chr5.2:25581080-25581099 | MS.gene68335:intron | 30.0% | |
| ATAGTTTATGGCATGTCTAT+AGG | - | chr5.2:25581145-25581164 | MS.gene68335:intron | 30.0% | |
| ATGCATTTCATGTCAACATT+AGG | - | chr5.2:25580556-25580575 | MS.gene68335:intron | 30.0% | |
| ATTGGGAGGACTAATTAAAA+TGG | - | chr5.2:25580115-25580134 | MS.gene68335:intron | 30.0% | |
| CATTCAAACTAGAGTGAATA+GGG | + | chr5.2:25580835-25580854 | None:intergenic | 30.0% | |
| CATTTAACATGCAATGTCAT+AGG | + | chr5.2:25580235-25580254 | None:intergenic | 30.0% | |
| CTCAAAGCGACTTATAATTT+GGG | - | chr5.2:25582203-25582222 | MS.gene68335:intron | 30.0% | |
| GGTCAAAACGACTTATAATT+TGG | - | chr5.2:25582146-25582165 | MS.gene68335:intron | 30.0% | |
| GTTAGAATCCAATTACATTC+AGG | + | chr5.2:25582635-25582654 | None:intergenic | 30.0% | |
| TAACTGTAGAAGTTATGAGA+GGG | - | chr5.2:25580708-25580727 | MS.gene68335:intron | 30.0% | |
| TAAGCTAGAACTATTAGAAG+TGG | - | chr5.2:25581350-25581369 | MS.gene68335:intron | 30.0% | |
| TACTCATAGTCATTAGAACA+TGG | + | chr5.2:25582922-25582941 | None:intergenic | 30.0% | |
| TCATTCAAACTAGAGTGAAT+AGG | + | chr5.2:25580836-25580855 | None:intergenic | 30.0% | |
| TCCCAAATTATAAATCGCTT+CGG | - | chr5.2:25581912-25581931 | MS.gene68335:intron | 30.0% | |
| TCTCAAAGCGACTTATAATT+TGG | - | chr5.2:25582202-25582221 | MS.gene68335:intron | 30.0% | |
| TGAAGAATCAATAGGGAAAT+TGG | - | chr5.2:25580079-25580098 | MS.gene68335:intron | 30.0% | |
| TGCATTTCATGTCAACATTA+GGG | - | chr5.2:25580557-25580576 | MS.gene68335:intron | 30.0% | |
| TTAATATCAAAGAGGAAACG+TGG | + | chr5.2:25581247-25581266 | None:intergenic | 30.0% | |
| ! | ACTTTGATTGCGTTTTATAG+AGG | - | chr5.2:25579788-25579807 | MS.gene68335:CDS | 30.0% |
| ! | CTTTTCAATACCATTAACGA+AGG | - | chr5.2:25582049-25582068 | MS.gene68335:intron | 30.0% |
| ! | GACATGTGAATTTTGTAGTA+AGG | - | chr5.2:25580351-25580370 | MS.gene68335:intron | 30.0% |
| ! | GTTTTACACCTGAATGTAAT+TGG | - | chr5.2:25582624-25582643 | MS.gene68335:CDS | 30.0% |
| ! | TAAAAGTTCAAGTTCAAGCA+AGG | + | chr5.2:25581501-25581520 | None:intergenic | 30.0% |
| !! | ATTGGTGTTTGACTTGATAT+TGG | - | chr5.2:25580097-25580116 | MS.gene68335:intron | 30.0% |
| !! | TTGGTGTTTGACTTGATATT+GGG | - | chr5.2:25580098-25580117 | MS.gene68335:intron | 30.0% |
| AACAGTATTTGATTGAACGG+AGG | - | chr5.2:25579744-25579763 | MS.gene68335:CDS | 35.0% | |
| AAGCGACTTATAATTTGGGA+TGG | - | chr5.2:25582207-25582226 | MS.gene68335:intron | 35.0% | |
| AATCGATGATGTTTCCGAAA+GGG | - | chr5.2:25579693-25579712 | MS.gene68335:CDS | 35.0% | |
| ACTATTAGAAGTGGGTGAAA+AGG | - | chr5.2:25581359-25581378 | MS.gene68335:intron | 35.0% | |
| AGCATCCAAGATTAAGATTG+AGG | - | chr5.2:25582501-25582520 | MS.gene68335:intron | 35.0% | |
| ATATAAGGCTTATCTTTCGG+TGG | + | chr5.2:25579920-25579939 | None:intergenic | 35.0% | |
| ATGCAAGCCATTAGAATTTC+AGG | + | chr5.2:25582548-25582567 | None:intergenic | 35.0% | |
| ATTAGGGCTATTATCACTTC+AGG | - | chr5.2:25580573-25580592 | MS.gene68335:intron | 35.0% | |
| ATTGGTCAAATTTGTCCTCA+TGG | + | chr5.2:25580944-25580963 | None:intergenic | 35.0% | |
| CATGTTCAATTTAATCCCCA+TGG | - | chr5.2:25580633-25580652 | MS.gene68335:intron | 35.0% | |
| CCCAAATTATAAATCGCTTC+GGG | - | chr5.2:25581913-25581932 | MS.gene68335:intron | 35.0% | |
| CCCGAAGCGATTTATAATTT+GGG | + | chr5.2:25581916-25581935 | None:intergenic | 35.0% | |
| CTAACTGTAGAAGTTATGAG+AGG | - | chr5.2:25580707-25580726 | MS.gene68335:intron | 35.0% | |
| CTATTAGAAGTGGGTGAAAA+GGG | - | chr5.2:25581360-25581379 | MS.gene68335:intron | 35.0% | |
| CTGTGGATAAATCTCTTAGA+AGG | - | chr5.2:25579951-25579970 | MS.gene68335:intron | 35.0% | |
| CTTTCTCATACCGTTAATGA+AGG | + | chr5.2:25581789-25581808 | None:intergenic | 35.0% | |
| GCACGTTAAATTCATGCATT+TGG | - | chr5.2:25580302-25580321 | MS.gene68335:intron | 35.0% | |
| GGTTACCTCAATCTTAATCT+TGG | + | chr5.2:25582509-25582528 | None:intergenic | 35.0% | |
| TCAGGAGGAGAATATATCTT+TGG | + | chr5.2:25582530-25582549 | None:intergenic | 35.0% | |
| TCCCGAAGCGATTTATAATT+TGG | + | chr5.2:25581917-25581936 | None:intergenic | 35.0% | |
| TCGTAACGAGTTAGTCAAAA+TGG | + | chr5.2:25580735-25580754 | None:intergenic | 35.0% | |
| TGAACATGTGATCTTACATG+TGG | - | chr5.2:25580253-25580272 | MS.gene68335:intron | 35.0% | |
| TGTGGCTAAATGCATATTCA+GGG | - | chr5.2:25580990-25581009 | MS.gene68335:intron | 35.0% | |
| TTACACATCTATATACGCTC+CGG | + | chr5.2:25581333-25581352 | None:intergenic | 35.0% | |
| TTCTCCTCCTGAAATTCTAA+TGG | - | chr5.2:25582538-25582557 | MS.gene68335:intron | 35.0% | |
| ! | ATTGCGTTTTATAGAGGAAG+TGG | - | chr5.2:25579794-25579813 | MS.gene68335:CDS | 35.0% |
| ! | GACTTATAATTTGGGATGGA+GGG | - | chr5.2:25582211-25582230 | MS.gene68335:intron | 35.0% |
| ! | GATTTATAATTTGGGACGGA+GGG | + | chr5.2:25581908-25581927 | None:intergenic | 35.0% |
| ! | GTTTCCGAAAGGGTATATTA+AGG | - | chr5.2:25579703-25579722 | MS.gene68335:CDS | 35.0% |
| ! | TATAGAGGAAGTGGTGTTAA+TGG | - | chr5.2:25579803-25579822 | MS.gene68335:CDS | 35.0% |
| !! | AAGGCTTGATTTGCATTTGT+TGG | - | chr5.2:25579996-25580015 | MS.gene68335:intron | 35.0% |
| !! | TATTCTGGGACTAATTTGTG+TGG | - | chr5.2:25580972-25580991 | MS.gene68335:intron | 35.0% |
| !!! | CAACTTGTTTTAAGCTCTCA+AGG | - | chr5.2:25581175-25581194 | MS.gene68335:intron | 35.0% |
| !!! | TTGTTTTAAGCTCTCAAGGA+TGG | - | chr5.2:25581179-25581198 | MS.gene68335:intron | 35.0% |
| ACTCAAAGAAAGTAGACCAC+AGG | + | chr5.2:25582443-25582462 | None:intergenic | 40.0% | |
| ACTCTTCTGCTAGGTTAAGT+AGG | - | chr5.2:25581414-25581433 | MS.gene68335:intron | 40.0% | |
| AGAAAGTAGACCACAGGAAA+AGG | + | chr5.2:25582437-25582456 | None:intergenic | 40.0% | |
| ATTTCTCGGATGAGTTCATC+AGG | - | chr5.2:25582721-25582740 | MS.gene68335:CDS | 40.0% | |
| CAAGCCATTAGAATTTCAGG+AGG | + | chr5.2:25582545-25582564 | None:intergenic | 40.0% | |
| CAATTTAATCCCCATGGTGT+AGG | - | chr5.2:25580639-25580658 | MS.gene68335:intron | 40.0% | |
| CATTGGATGGCATCTTCTAA+AGG | - | chr5.2:25582684-25582703 | MS.gene68335:CDS | 40.0% | |
| CTTTGAGTCAATGCATGCTA+TGG | - | chr5.2:25582455-25582474 | MS.gene68335:intron | 40.0% | |
| GAATCGATGATGTTTCCGAA+AGG | - | chr5.2:25579692-25579711 | MS.gene68335:CDS | 40.0% | |
| GTGGCTAAATGCATATTCAG+GGG | - | chr5.2:25580991-25581010 | MS.gene68335:intron | 40.0% | |
| GTGTGGCTAAATGCATATTC+AGG | - | chr5.2:25580989-25581008 | MS.gene68335:intron | 40.0% | |
| GTTGTTTATTCAAACCCTCC+CGG | - | chr5.2:25581311-25581330 | MS.gene68335:intron | 40.0% | |
| TAATTCTACTCTTCCTTCGC+CGG | - | chr5.2:25579892-25579911 | MS.gene68335:intron | 40.0% | |
| TACACATCTATATACGCTCC+GGG | + | chr5.2:25581332-25581351 | None:intergenic | 40.0% | |
| TCACAAACCAATTCACGTGT+AGG | + | chr5.2:25581057-25581076 | None:intergenic | 40.0% | |
| TGAAGAAGAGGAAATGCAGT+TGG | - | chr5.2:25579832-25579851 | MS.gene68335:CDS | 40.0% | |
| ! | ACTTTTAGCACAGACAGAGT+AGG | - | chr5.2:25581514-25581533 | MS.gene68335:intron | 40.0% |
| ! | CGACTTATAATTTGGGATGG+AGG | - | chr5.2:25582210-25582229 | MS.gene68335:intron | 40.0% |
| ! | CGATTTATAATTTGGGACGG+AGG | + | chr5.2:25581909-25581928 | None:intergenic | 40.0% |
| ! | CTTTTAGCACAGACAGAGTA+GGG | - | chr5.2:25581515-25581534 | MS.gene68335:intron | 40.0% |
| ! | GACTTATAATTTGGGACGGA+GGG | - | chr5.2:25582155-25582174 | MS.gene68335:intron | 40.0% |
| ! | TCTGAAGGCATACTTAAGAG+AGG | + | chr5.2:25582889-25582908 | None:intergenic | 40.0% |
| !! | GTGTTTGACTTGATATTGGG+AGG | - | chr5.2:25580101-25580120 | MS.gene68335:intron | 40.0% |
| !! | TAATGGTGATGGTGAAGAAG+AGG | - | chr5.2:25579820-25579839 | MS.gene68335:CDS | 40.0% |
| !! | TAGAAGTGTCAAGAACCATG+AGG | - | chr5.2:25580926-25580945 | MS.gene68335:intron | 40.0% |
| AAGAGGAAATGCAGTTGGCT+GGG | - | chr5.2:25579837-25579856 | MS.gene68335:CDS | 45.0% | |
| CACGTAAATCCTACACCATG+GGG | + | chr5.2:25580651-25580670 | None:intergenic | 45.0% | |
| CCACGTAAATCCTACACCAT+GGG | + | chr5.2:25580652-25580671 | None:intergenic | 45.0% | |
| CGCTATTGTATGCTTGCTTG+CGG | - | chr5.2:25579658-25579677 | MS.gene68335:CDS | 45.0% | |
| GCAATCAAAGTCGCCATATG+CGG | + | chr5.2:25579779-25579798 | None:intergenic | 45.0% | |
| GTCAAATAGAGGATAGGCAG+AGG | - | chr5.2:25580381-25580400 | MS.gene68335:intron | 45.0% | |
| TCCACGTAAATCCTACACCA+TGG | + | chr5.2:25580653-25580672 | None:intergenic | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | + | chr5.2:25580517-25580536 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | + | chr5.2:25580518-25580537 | None:intergenic | 45.0% |
| ! | CAAGCGAGGAACTGATTTCT+CGG | - | chr5.2:25582707-25582726 | MS.gene68335:CDS | 45.0% |
| ! | CGACTTATAATTTGGGACGG+AGG | - | chr5.2:25582154-25582173 | MS.gene68335:intron | 45.0% |
| ! | GGAAGTGGTGTTAATGGTGA+TGG | - | chr5.2:25579809-25579828 | MS.gene68335:CDS | 45.0% |
| ! | GGACGGAGGGAGTATAATTT+GGG | - | chr5.2:25582168-25582187 | MS.gene68335:intron | 45.0% |
| ! | TCAAGCCTTATCCCACTAAG+TGG | + | chr5.2:25580519-25580538 | None:intergenic | 45.0% |
| !! | CATGGCACGTTTGTTTCTGA+AGG | + | chr5.2:25582904-25582923 | None:intergenic | 45.0% |
| !! | TTCTAAGAGTGTCTCCCTTC+AGG | - | chr5.2:25582656-25582675 | MS.gene68335:CDS | 45.0% |
| ACATCTATATACGCTCCGGG+AGG | + | chr5.2:25581329-25581348 | None:intergenic | 50.0% | |
| CATCTATATACGCTCCGGGA+GGG | + | chr5.2:25581328-25581347 | None:intergenic | 50.0% | |
| CCCATGGTGTAGGATTTACG+TGG | - | chr5.2:25580649-25580668 | MS.gene68335:intron | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | + | chr5.2:25580513-25580532 | None:intergenic | 50.0% | |
| GAAGAGGAAATGCAGTTGGC+TGG | - | chr5.2:25579836-25579855 | MS.gene68335:CDS | 50.0% | |
| GAGGAGTTTGATGCCGCATA+TGG | - | chr5.2:25579763-25579782 | MS.gene68335:CDS | 50.0% | |
| GCTCTCAACACACTCACAAG+TGG | + | chr5.2:25581117-25581136 | None:intergenic | 50.0% | |
| GGCTTATCTTTCGGTGGATC+CGG | + | chr5.2:25579914-25579933 | None:intergenic | 50.0% | |
| ! | GCATCTTCTAAAGGCAAGCG+AGG | - | chr5.2:25582693-25582712 | MS.gene68335:CDS | 50.0% |
| ! | GGGACGGAGGGAGTATAATT+TGG | - | chr5.2:25582167-25582186 | MS.gene68335:intron | 50.0% |
| !! | AAGAGTGTCTCCCTTCAGGA+GGG | - | chr5.2:25582660-25582679 | MS.gene68335:CDS | 50.0% |
| !! | TAAGAGTGTCTCCCTTCAGG+AGG | - | chr5.2:25582659-25582678 | MS.gene68335:CDS | 50.0% |
| ATGTAGCCGACCCCACTTAG+TGG | - | chr5.2:25580504-25580523 | MS.gene68335:intron | 55.0% | |
| CATCCAATGCCCCTCCTGAA+GGG | + | chr5.2:25582673-25582692 | None:intergenic | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | - | chr5.2:25580511-25580530 | MS.gene68335:intron | 55.0% | |
| GGTTGCGCCTACACGTGAAT+TGG | - | chr5.2:25581047-25581066 | MS.gene68335:intron | 55.0% | |
| TGCGTCTCTGCAACAACAGC+AGG | + | chr5.2:25582843-25582862 | None:intergenic | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | - | chr5.2:25580505-25580524 | MS.gene68335:intron | 55.0% | |
| ! | AGAGTGTCTCCCTTCAGGAG+GGG | - | chr5.2:25582661-25582680 | MS.gene68335:CDS | 55.0% |
| CCATCCAATGCCCCTCCTGA+AGG | + | chr5.2:25582674-25582693 | None:intergenic | 60.0% | |
| TCTTTCGGTGGATCCGGCGA+AGG | + | chr5.2:25579908-25579927 | None:intergenic | 60.0% | |
| ! | TCTCCCTTCAGGAGGGGCAT+TGG | - | chr5.2:25582667-25582686 | MS.gene68335:CDS | 60.0% |
| !! | CCTTCAGGAGGGGCATTGGA+TGG | - | chr5.2:25582671-25582690 | MS.gene68335:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 25579638 | 25582942 | 25579638 | ID=MS.gene68335 |
| chr5.2 | mRNA | 25579638 | 25582942 | 25579638 | ID=MS.gene68335.t1;Parent=MS.gene68335 |
| chr5.2 | exon | 25582608 | 25582942 | 25582608 | ID=MS.gene68335.t1.exon1;Parent=MS.gene68335.t1 |
| chr5.2 | CDS | 25582608 | 25582942 | 25582608 | ID=cds.MS.gene68335.t1;Parent=MS.gene68335.t1 |
| chr5.2 | exon | 25579638 | 25579902 | 25579638 | ID=MS.gene68335.t1.exon2;Parent=MS.gene68335.t1 |
| chr5.2 | CDS | 25579638 | 25579902 | 25579638 | ID=cds.MS.gene68335.t1;Parent=MS.gene68335.t1 |
| Gene Sequence |
| Protein sequence |
