AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene057331


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene057331.t1 MTR_3g070340 99.281 278 2 0 1 278 1 278 0.0 567
MS.gene057331.t1 MTR_4g015570 70.943 265 73 1 11 275 12 272 1.07e-132 377
MS.gene057331.t1 MTR_6g033320 34.545 220 96 5 60 275 49 224 1.16e-30 115
MS.gene057331.t1 MTR_2g008610 32.800 250 78 7 60 271 60 257 1.58e-29 112
MS.gene057331.t1 MTR_8g023790 31.206 282 107 9 20 270 21 246 5.30e-27 106
MS.gene057331.t1 MTR_2g042720 29.097 299 129 9 1 270 1 245 4.69e-25 100
MS.gene057331.t1 MTR_3g101670 29.435 248 106 5 42 270 46 243 2.08e-23 96.7
MS.gene057331.t1 MTR_3g435460 33.610 241 78 8 52 269 48 229 2.97e-23 95.9
MS.gene057331.t1 MTR_6g060175 33.486 218 91 5 67 274 91 264 7.30e-23 95.5
MS.gene057331.t1 MTR_2g081090 42.177 147 70 5 139 270 65 211 2.33e-22 93.2
MS.gene057331.t1 MTR_2g081090 42.177 147 70 5 139 270 92 238 2.94e-22 93.6
MS.gene057331.t1 MTR_6g011890 45.395 152 62 8 136 270 92 239 4.55e-22 92.8
MS.gene057331.t1 MTR_6g011870 46.309 149 59 8 139 270 95 239 7.07e-22 92.4
MS.gene057331.t1 MTR_6g011880 46.309 149 59 8 139 270 95 239 7.75e-22 92.4
MS.gene057331.t1 MTR_6g012080 45.033 151 62 8 137 270 93 239 8.94e-22 92.0
MS.gene057331.t1 MTR_4g094605 33.992 253 93 11 45 270 35 240 1.07e-21 92.0
MS.gene057331.t1 MTR_6g012110 45.098 153 63 8 139 274 95 243 1.57e-21 91.3
MS.gene057331.t1 MTR_5g097280 44.371 151 63 8 137 270 93 239 4.18e-21 90.1
MS.gene057331.t1 MTR_5g098780 29.811 265 115 7 33 269 31 252 3.29e-20 88.2
MS.gene057331.t1 MTR_5g098785 27.946 297 143 7 1 269 1 254 1.80e-19 85.9
MS.gene057331.t1 MTR_3g435460 33.182 220 65 8 73 269 8 168 1.13e-18 82.0
MS.gene057331.t1 MTR_1g026550 28.517 263 103 8 44 270 95 308 2.66e-18 83.6
MS.gene057331.t1 MTR_6g060175 40.580 138 71 4 147 274 118 254 1.31e-17 80.9
MS.gene057331.t1 MTR_6g043600 40.288 139 62 5 139 270 79 203 1.05e-16 77.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene057331.t1 AT2G40100 70.522 268 78 1 11 278 10 276 4.67e-138 390
MS.gene057331.t1 AT3G08940 71.260 254 67 1 22 275 23 270 1.59e-128 367
MS.gene057331.t1 AT5G01530 76.923 221 51 0 55 275 53 273 7.07e-126 360
MS.gene057331.t1 AT2G40100 62.286 175 66 0 11 185 10 184 3.07e-75 228
MS.gene057331.t1 AT3G08940 60.479 167 60 1 22 188 23 183 4.34e-66 206
MS.gene057331.t1 AT3G54890 34.583 240 105 7 40 275 32 223 3.89e-34 124
MS.gene057331.t1 AT1G15820 34.454 238 70 7 67 271 70 254 6.55e-31 116
MS.gene057331.t1 AT3G54890 33.333 213 91 6 40 249 32 196 2.42e-27 105
MS.gene057331.t1 AT3G47470 31.879 298 106 12 1 269 1 230 8.70e-27 105
MS.gene057331.t1 AT3G61470 32.780 241 84 8 54 270 49 235 7.66e-26 102
MS.gene057331.t1 AT4G10340 35.616 219 85 7 67 274 82 255 1.54e-24 100
MS.gene057331.t1 AT1G45474 30.802 237 85 6 60 270 49 232 2.91e-23 95.9
MS.gene057331.t1 AT1G45474 30.802 237 85 6 60 270 49 232 2.91e-23 95.9
MS.gene057331.t1 AT1G29920 46.309 149 64 7 137 270 94 241 5.74e-23 95.5
MS.gene057331.t1 AT1G29910 46.309 149 64 7 137 270 94 241 5.74e-23 95.5
MS.gene057331.t1 AT1G29930 46.309 149 64 7 137 270 94 241 6.36e-23 95.1
MS.gene057331.t1 AT5G54270 42.177 147 70 4 139 270 93 239 1.06e-22 94.7
MS.gene057331.t1 AT2G34430 45.638 149 65 7 137 270 93 240 1.46e-22 94.4
MS.gene057331.t1 AT2G34420 45.638 149 65 7 137 270 92 239 1.51e-22 94.4
MS.gene057331.t1 AT3G27690 32.660 297 116 14 1 270 1 240 7.53e-22 92.4
MS.gene057331.t1 AT3G27690 32.095 296 119 13 2 270 32 272 1.11e-21 92.4
MS.gene057331.t1 AT1G19150 31.873 251 92 9 45 270 52 248 1.63e-21 91.7
MS.gene057331.t1 AT2G05100 45.638 149 60 8 139 270 95 239 2.16e-21 91.3
MS.gene057331.t1 AT2G05070 45.638 149 60 8 139 270 95 239 2.79e-21 90.9
MS.gene057331.t1 AT1G61520 30.894 246 99 7 52 269 48 250 1.80e-20 89.0
MS.gene057331.t1 AT1G61520 30.894 246 99 7 52 269 48 250 1.80e-20 89.0
MS.gene057331.t1 AT2G05100 43.537 147 62 8 139 268 95 237 1.02e-17 82.0
MS.gene057331.t1 AT1G76570 31.140 228 89 7 67 270 123 306 4.12e-17 80.1
MS.gene057331.t1 AT1G61520 30.222 225 86 7 73 269 14 195 5.09e-15 72.8

Find 86 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGACTCACTTGACCAGAATT+TGG 0.222195 3.1:-57675061 MS.gene057331:CDS
TGAAGTCTTTCTTTCTCTTC+AGG 0.232786 3.1:+57672929 None:intergenic
GCAATTCAAGCTGCTGTTAC+AGG 0.247549 3.1:-57672854 MS.gene057331:CDS
AACCTTGCAGGTGATATTAT+TGG 0.288594 3.1:-57675033 MS.gene057331:CDS
TCTCAATTAGCACATTGATA+TGG 0.300061 3.1:-57673066 MS.gene057331:CDS
AAAGCCAGCACCTAAGAAAA+AGG 0.307836 3.1:-57675235 MS.gene057331:CDS
CAAGGTTCTTAGCCAAATTC+TGG 0.307978 3.1:+57675049 None:intergenic
GCTTGGTGCTCTTGGTGCTT+TGG 0.323196 3.1:-57674899 MS.gene057331:CDS
TGGATCGAAGTATTAGTAAT+TGG 0.342370 3.1:-57673046 MS.gene057331:CDS
GTTCTTTGATCCTCTTGGTT+TGG 0.345697 3.1:-57672960 MS.gene057331:CDS
GATGGGCTAGTGTGGTTTCC+TGG 0.346659 3.1:-57675183 MS.gene057331:CDS
CTTAGGTGCTGGCTTTAACT+TGG 0.357661 3.1:+57675242 None:intergenic
CGTGAGTGTGAGGTTATTCA+TGG 0.369098 3.1:-57674934 MS.gene057331:CDS
AATTTGGCTAAGAACCTTGC+AGG 0.371981 3.1:-57675045 MS.gene057331:CDS
TTCTTTCTCTTCAGGATCAC+TGG 0.375610 3.1:+57672937 None:intergenic
GGAAAGTTCTTTGATCCTCT+TGG 0.394828 3.1:-57672965 MS.gene057331:CDS
CTGGCTTTAACTTGGTGCCT+AGG 0.395823 3.1:+57675250 None:intergenic
CGACATGGTGGCGGCGGTTG+CGG 0.399441 3.1:+57675338 None:intergenic
ACCTCCGTGTACGGCTGAAA+CGG 0.403781 3.1:+57674976 None:intergenic
GTTACAGGTAAAGGACCTAT+TGG 0.405127 3.1:-57672839 MS.gene057331:CDS
AGAGATTAAGCATTCTCGTT+TGG 0.409182 3.1:-57672900 MS.gene057331:CDS
TGGGCTATGCTTGGTGCTCT+TGG 0.414754 3.1:-57674907 MS.gene057331:CDS
AGAGAAAGAAAGACTTCAAC+TGG 0.425516 3.1:-57672924 MS.gene057331:CDS
TTGGCTGTTGAAGCTTTCAC+TGG 0.429779 3.1:-57674880 MS.gene057331:CDS
CATTCCGGTGGCTGAGCACC+AGG 0.445435 3.1:+57675165 None:intergenic
TGACCGTGGTTTCGATCCAT+TGG 0.446656 3.1:-57675121 MS.gene057331:CDS
GTGGAAGGATCATCCTACTT+TGG 0.447717 3.1:-57673103 MS.gene057331:CDS
ACGAACTCTTCCCATGTTTG+AGG 0.451082 3.1:+57675284 None:intergenic
GTGAGGTTATTCATGGAAGA+TGG 0.455594 3.1:-57674927 MS.gene057331:CDS
CAAGCTGCTGTTACAGGTAA+AGG 0.458377 3.1:-57672848 MS.gene057331:CDS
ATTGTCCCATCGAGCCATTC+CGG 0.459993 3.1:+57675150 None:intergenic
CTGCAAATACTCAACAGGTT+TGG 0.465448 3.1:+57675092 None:intergenic
AGCCACCGGAATGGCTCGAT+GGG 0.465925 3.1:-57675155 MS.gene057331:CDS
TCAAACTGCAAATACTCAAC+AGG 0.466866 3.1:+57675087 None:intergenic
ATCAATGTGCTAATTGAGAA+TGG 0.470549 3.1:+57673070 None:intergenic
GACCGTGGTTTCGATCCATT+GGG 0.475235 3.1:-57675120 MS.gene057331:CDS
GGCGGTTGCGGTGGTTGCCA+TGG 0.475490 3.1:+57675350 None:intergenic
AAGGTGGCAATGAAACCAAT+AGG 0.493028 3.1:+57672824 None:intergenic
CTATGTTCAGGTAGAGTTGG+TGG 0.493133 3.1:-57673122 MS.gene057331:intron
TTGGCTACATTGAGTTTCAA+AGG 0.497966 3.1:-57673027 MS.gene057331:CDS
CTTGGTGCCTAGGTTGAAGA+AGG 0.509668 3.1:+57675260 None:intergenic
GTTCGTGCCTTCTTCAACCT+AGG 0.509983 3.1:-57675267 MS.gene057331:CDS
TAACTATGTTCAGGTAGAGT+TGG 0.512557 3.1:-57673125 MS.gene057331:intron
CATGGTGGCGGCGGTTGCGG+TGG 0.515542 3.1:+57675341 None:intergenic
CAGCCACCGGAATGGCTCGA+TGG 0.522740 3.1:-57675156 MS.gene057331:CDS
GTGAGAAAACAAGAAAGTGA+TGG 0.525794 3.1:-57675201 MS.gene057331:CDS
CAGAGCTTGACCCAGAGAAA+AGG 0.527322 3.1:-57673000 MS.gene057331:CDS
TAAGCATTCTCGTTTGGCCA+TGG 0.530126 3.1:-57672894 MS.gene057331:CDS
GTTTCCTGGTGCTCAGCCAC+CGG 0.530681 3.1:-57675169 MS.gene057331:CDS
CTGGTGCTCAGCCACCGGAA+TGG 0.535531 3.1:-57675164 MS.gene057331:CDS
ACTCTTCCCATGTTTGAGGT+TGG 0.539963 3.1:+57675288 None:intergenic
ATGCAAACCAACCTCAAACA+TGG 0.540062 3.1:-57675295 MS.gene057331:CDS
GGTGTCGCATGGCAAGATGC+TGG 0.547425 3.1:-57674859 MS.gene057331:CDS
TGGCTCGATGGGACAATGAT+CGG 0.548987 3.1:-57675144 MS.gene057331:CDS
GTGTACGGCTGAAACGGTGT+AGG 0.555155 3.1:+57674982 None:intergenic
TGGAAGAGAAAATCCAAAGT+AGG 0.556136 3.1:+57673090 None:intergenic
TGAGAAAACAAGAAAGTGAT+GGG 0.557906 3.1:-57675200 MS.gene057331:CDS
TGAGGTTATTCATGGAAGAT+GGG 0.560063 3.1:-57674926 MS.gene057331:CDS
AAGCTTTCACTGGTGTCGCA+TGG 0.563145 3.1:-57674870 MS.gene057331:CDS
CATGGAAGATGGGCTATGCT+TGG 0.567622 3.1:-57674916 MS.gene057331:CDS
TGCAAACCAACCTCAAACAT+GGG 0.573832 3.1:-57675294 MS.gene057331:CDS
CATGTTATGTCACTGGTTGA+AGG 0.575668 3.1:+57672805 None:intergenic
ACAGGTTTGGCTAATCCCAA+TGG 0.582632 3.1:+57675105 None:intergenic
CGCATGGCAAGATGCTGGAA+AGG 0.585268 3.1:-57674854 MS.gene057331:intron
AAGAAAGTGATGGGCTAGTG+TGG 0.588770 3.1:-57675191 MS.gene057331:CDS
GCATTCTCGTTTGGCCATGG+TGG 0.594283 3.1:-57672891 MS.gene057331:CDS
AAAATGCGACATGGTGGCGG+CGG 0.597180 3.1:+57675332 None:intergenic
TGATATTATTGGCACTAGAG+TGG 0.597745 3.1:-57675022 MS.gene057331:CDS
TCAGAGGTTTCGTGAGTGTG+AGG 0.598879 3.1:-57674944 MS.gene057331:CDS
CAGCTTGAATTGCAAAGATG+AGG 0.604000 3.1:+57672864 None:intergenic
TGCCAATAATATCACCTGCA+AGG 0.604262 3.1:+57675031 None:intergenic
GGGACAATGATCGGTGACCG+TGG 0.605769 3.1:-57675135 MS.gene057331:CDS
GGATCAAAGAACTTTCCACC+TGG 0.626938 3.1:+57672971 None:intergenic
TGTACGGCTGAAACGGTGTA+GGG 0.629672 3.1:+57674983 None:intergenic
GTTCAGGTAGAGTTGGTGGA+AGG 0.634996 3.1:-57673118 MS.gene057331:intron
GTCCCATCGAGCCATTCCGG+TGG 0.639550 3.1:+57675153 None:intergenic
ATCCCAATGGATCGAAACCA+CGG 0.649765 3.1:+57675118 None:intergenic
TACACCGTTTCAGCCGTACA+CGG 0.655431 3.1:-57674980 MS.gene057331:CDS
GATCAAAGAACTTTCCACCT+GGG 0.656433 3.1:+57672972 None:intergenic
GGATCACTGGCCAAACCAAG+AGG 0.688433 3.1:+57672950 None:intergenic
GAGAAAAGGTTATACCCAGG+TGG 0.695158 3.1:-57672986 MS.gene057331:CDS
ACCGTTTCAGCCGTACACGG+AGG 0.695892 3.1:-57674977 MS.gene057331:CDS
CCAGAGAAAAGGTTATACCC+AGG 0.700487 3.1:-57672989 MS.gene057331:CDS
GTTATGTCACTGGTTGAAGG+TGG 0.717219 3.1:+57672808 None:intergenic
CACTAGAGTGGAGAGTACAG+AGG 0.719429 3.1:-57675010 MS.gene057331:CDS
AAAGATGAGGAAAACCACCA+TGG 0.725876 3.1:+57672877 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTTAAAATGAATAAGTA+TGG - chr3.1:57673841-57673860 MS.gene057331:intron 10.0%
!!! TAAACCATATAAATTTTTAT+CGG - chr3.1:57673707-57673726 MS.gene057331:intron 10.0%
!!! TATTTTTTTGTTATACAAAA+CGG + chr3.1:57674547-57674566 None:intergenic 10.0%
!! AATTAATCCAATATTTGAAT+CGG + chr3.1:57673587-57673606 None:intergenic 15.0%
!! AATTCCGATAAAAATTTATA+TGG + chr3.1:57673714-57673733 None:intergenic 15.0%
!!! TTTTCTTTTAATCTTTAGTT+AGG - chr3.1:57674390-57674409 MS.gene057331:intron 15.0%
!! ATTGAATAACAACAATGAAA+AGG + chr3.1:57673349-57673368 None:intergenic 20.0%
!! GACAATGTATTATATATGTA+AGG + chr3.1:57673895-57673914 None:intergenic 20.0%
!! TCAATAATAAAGATTACAAC+AGG + chr3.1:57673956-57673975 None:intergenic 20.0%
!!! ATGAGTTTTCAAATTCATTA+AGG - chr3.1:57673381-57673400 MS.gene057331:intron 20.0%
!!! CACATTATTATTTGATTTGT+AGG - chr3.1:57674290-57674309 MS.gene057331:intron 20.0%
! ACCAATTAGACTAACATATT+AGG - chr3.1:57673512-57673531 MS.gene057331:intron 25.0%
! GATCTTTCATTAACATCATT+GGG - chr3.1:57674041-57674060 MS.gene057331:intron 25.0%
! TGATCTTTCATTAACATCAT+TGG - chr3.1:57674040-57674059 MS.gene057331:intron 25.0%
!! GATTTTATGTGTATTAGCTA+CGG - chr3.1:57674138-57674157 MS.gene057331:intron 25.0%
!! TTTTGTCAAGTAGTATATAG+TGG - chr3.1:57673808-57673827 MS.gene057331:intron 25.0%
!! TTTTTCACTTCCTTTTTCTT+AGG + chr3.1:57672940-57672959 None:intergenic 25.0%
!!! ATAGCTTATTTTCATGAACT+TGG - chr3.1:57674643-57674662 MS.gene057331:intron 25.0%
!!! TTATCCGCTATTTTTTACAA+CGG - chr3.1:57674931-57674950 MS.gene057331:CDS 25.0%
!!! TTTTTTCAATGAAGATTGCA+AGG + chr3.1:57674740-57674759 None:intergenic 25.0%
AAAAGCTTAACCAGGAATAT+TGG + chr3.1:57674206-57674225 None:intergenic 30.0%
AACGGAACCAAAATTAAAGA+CGG - chr3.1:57674949-57674968 MS.gene057331:CDS 30.0%
ACTACTATCTAACTATGTTC+AGG - chr3.1:57675028-57675047 MS.gene057331:CDS 30.0%
ACTGATAAACTACCTTATAG+CGG + chr3.1:57674912-57674931 None:intergenic 30.0%
ATCAATGTGCTAATTGAGAA+TGG + chr3.1:57675095-57675114 None:intergenic 30.0%
GCTCTTTCAATCTTAATGTT+CGG + chr3.1:57673413-57673432 None:intergenic 30.0%
GTAATACAAAAAGCTTAACC+AGG + chr3.1:57674214-57674233 None:intergenic 30.0%
TCTCAATTAGCACATTGATA+TGG - chr3.1:57675096-57675115 MS.gene057331:CDS 30.0%
TGAAGATTGCAAGGATAAAA+TGG + chr3.1:57674731-57674750 None:intergenic 30.0%
TGAGAAAACAAGAAAGTGAT+GGG - chr3.1:57672962-57672981 MS.gene057331:CDS 30.0%
TTATAAGTTCATCCGCTATA+AGG - chr3.1:57674897-57674916 MS.gene057331:CDS 30.0%
TTGTATTACCGTGGTTTATA+TGG - chr3.1:57674225-57674244 MS.gene057331:intron 30.0%
TTGTTATACAAAACGGACAA+TGG + chr3.1:57674540-57674559 None:intergenic 30.0%
! AGCTAGTTTATAGTTGATTG+CGG + chr3.1:57674866-57674885 None:intergenic 30.0%
! ATTTTTGTCTTCATCGTTCT+TGG + chr3.1:57674269-57674288 None:intergenic 30.0%
! GCCTAATATGTTAGTCTAAT+TGG + chr3.1:57673516-57673535 None:intergenic 30.0%
! TGGATCGAAGTATTAGTAAT+TGG - chr3.1:57675116-57675135 MS.gene057331:CDS 30.0%
! TTAAGCTTTTTGTATTACCG+TGG - chr3.1:57674216-57674235 MS.gene057331:intron 30.0%
!! AAGCATACCGATTCAAATAT+TGG - chr3.1:57673577-57673596 MS.gene057331:intron 30.0%
AACCTTGCAGGTGATATTAT+TGG - chr3.1:57673129-57673148 MS.gene057331:intron 35.0%
ACGGAACCAAAATTAAAGAC+GGG - chr3.1:57674950-57674969 MS.gene057331:CDS 35.0%
AGAATCACATACATGACCTA+GGG + chr3.1:57674179-57674198 None:intergenic 35.0%
AGAGAAAGAAAGACTTCAAC+TGG - chr3.1:57675238-57675257 MS.gene057331:CDS 35.0%
AGAGATTAAGCATTCTCGTT+TGG - chr3.1:57675262-57675281 MS.gene057331:CDS 35.0%
AGCATTTACAAACACCAACA+AGG - chr3.1:57673430-57673449 MS.gene057331:intron 35.0%
ATCTTCAGCCATATAAACCA+CGG + chr3.1:57674236-57674255 None:intergenic 35.0%
GAGTTGAACACATGTTATTG+CGG - chr3.1:57673471-57673490 MS.gene057331:intron 35.0%
GGTTCCGTTGTAAAAAATAG+CGG + chr3.1:57674938-57674957 None:intergenic 35.0%
GTGAGAAAACAAGAAAGTGA+TGG - chr3.1:57672961-57672980 MS.gene057331:CDS 35.0%
TAACTATGTTCAGGTAGAGT+TGG - chr3.1:57675037-57675056 MS.gene057331:CDS 35.0%
TCAAACTGCAAATACTCAAC+AGG + chr3.1:57673078-57673097 None:intergenic 35.0%
TGAAGTCTTTCTTTCTCTTC+AGG + chr3.1:57675236-57675255 None:intergenic 35.0%
TGAGGTTATTCATGGAAGAT+GGG - chr3.1:57673236-57673255 MS.gene057331:intron 35.0%
TGATATTATTGGCACTAGAG+TGG - chr3.1:57673140-57673159 MS.gene057331:intron 35.0%
TGGAAGAGAAAATCCAAAGT+AGG + chr3.1:57675075-57675094 None:intergenic 35.0%
TTGGCTACATTGAGTTTCAA+AGG - chr3.1:57675135-57675154 MS.gene057331:CDS 35.0%
! CAACAAGGTTCTAATGTTAC+CGG - chr3.1:57673445-57673464 MS.gene057331:intron 35.0%
!! ACTTTTTCTGTGTAGCTTGT+TGG + chr3.1:57674350-57674369 None:intergenic 35.0%
!! TCTTTGCCCGTCTTTAATTT+TGG + chr3.1:57674959-57674978 None:intergenic 35.0%
!!! CTTTTTCTGTGTAGCTTGTT+GGG + chr3.1:57674349-57674368 None:intergenic 35.0%
AAAGATGAGGAAAACCACCA+TGG + chr3.1:57675288-57675307 None:intergenic 40.0%
AAAGCCAGCACCTAAGAAAA+AGG - chr3.1:57672927-57672946 MS.gene057331:CDS 40.0%
AAGGTGGCAATGAAACCAAT+AGG + chr3.1:57675341-57675360 None:intergenic 40.0%
AATTTGGCTAAGAACCTTGC+AGG - chr3.1:57673117-57673136 MS.gene057331:intron 40.0%
ACATCATTGGGATCAGATAC+TGG - chr3.1:57674053-57674072 MS.gene057331:intron 40.0%
ACTGAGTTCAAACTCGAACT+CGG + chr3.1:57673872-57673891 None:intergenic 40.0%
ATGCAAACCAACCTCAAACA+TGG - chr3.1:57672867-57672886 MS.gene057331:CDS 40.0%
ATTCCAAAAACCTCCGTGTA+CGG + chr3.1:57673198-57673217 None:intergenic 40.0%
CAAGGTTCTTAGCCAAATTC+TGG + chr3.1:57673116-57673135 None:intergenic 40.0%
CAGAATCACATACATGACCT+AGG + chr3.1:57674180-57674199 None:intergenic 40.0%
CAGCTTGAATTGCAAAGATG+AGG + chr3.1:57675301-57675320 None:intergenic 40.0%
CGGTAACATTAGAACCTTGT+TGG + chr3.1:57673447-57673466 None:intergenic 40.0%
CTGCAAATACTCAACAGGTT+TGG + chr3.1:57673073-57673092 None:intergenic 40.0%
GAAACTATGTGACAAGACAG+AGG - chr3.1:57674097-57674116 MS.gene057331:intron 40.0%
GAGTGTGTGGAAATTAGAAG+GGG - chr3.1:57674075-57674094 MS.gene057331:intron 40.0%
GATCAAAGAACTTTCCACCT+GGG + chr3.1:57675193-57675212 None:intergenic 40.0%
GGAAAGTTCTTTGATCCTCT+TGG - chr3.1:57675197-57675216 MS.gene057331:CDS 40.0%
GGAGTGTGTGGAAATTAGAA+GGG - chr3.1:57674074-57674093 MS.gene057331:intron 40.0%
GTGAGGTTATTCATGGAAGA+TGG - chr3.1:57673235-57673254 MS.gene057331:intron 40.0%
GTTACAGGTAAAGGACCTAT+TGG - chr3.1:57675323-57675342 MS.gene057331:CDS 40.0%
GTTCTTTGATCCTCTTGGTT+TGG - chr3.1:57675202-57675221 MS.gene057331:CDS 40.0%
TAGCTACGGACAACGTAATA+TGG - chr3.1:57674152-57674171 MS.gene057331:intron 40.0%
TGACTCACTTGACCAGAATT+TGG - chr3.1:57673101-57673120 MS.gene057331:CDS 40.0%
TGCAAACCAACCTCAAACAT+GGG - chr3.1:57672868-57672887 MS.gene057331:CDS 40.0%
TGCCAATAATATCACCTGCA+AGG + chr3.1:57673134-57673153 None:intergenic 40.0%
TGGAGTGTGTGGAAATTAGA+AGG - chr3.1:57674073-57674092 MS.gene057331:intron 40.0%
TTCTTTCTCTTCAGGATCAC+TGG + chr3.1:57675228-57675247 None:intergenic 40.0%
! ACTTCCTTTTTCTTAGGTGC+TGG + chr3.1:57672934-57672953 None:intergenic 40.0%
! CTGGGTATAACCTTTTCTCT+GGG + chr3.1:57675175-57675194 None:intergenic 40.0%
ACAGGTTTGGCTAATCCCAA+TGG + chr3.1:57673060-57673079 None:intergenic 45.0%
ACGAACTCTTCCCATGTTTG+AGG + chr3.1:57672881-57672900 None:intergenic 45.0%
ATCCCAATGGATCGAAACCA+CGG + chr3.1:57673047-57673066 None:intergenic 45.0%
CAAGCTGCTGTTACAGGTAA+AGG - chr3.1:57675314-57675333 MS.gene057331:CDS 45.0%
CCAGAGAAAAGGTTATACCC+AGG - chr3.1:57675173-57675192 MS.gene057331:CDS 45.0%
CGTGAGTGTGAGGTTATTCA+TGG - chr3.1:57673228-57673247 MS.gene057331:intron 45.0%
CTATGTTCAGGTAGAGTTGG+TGG - chr3.1:57675040-57675059 MS.gene057331:CDS 45.0%
GAAAAAATGCGACATGGTGG+CGG + chr3.1:57672836-57672855 None:intergenic 45.0%
GACAACGTAATATGGTCCCT+AGG - chr3.1:57674160-57674179 MS.gene057331:intron 45.0%
GAGAAAAGGTTATACCCAGG+TGG - chr3.1:57675176-57675195 MS.gene057331:CDS 45.0%
GATTCTGTCGCCAATATTCC+TGG - chr3.1:57674193-57674212 MS.gene057331:intron 45.0%
GCAATTCAAGCTGCTGTTAC+AGG - chr3.1:57675308-57675327 MS.gene057331:CDS 45.0%
GGATCAAAGAACTTTCCACC+TGG + chr3.1:57675194-57675213 None:intergenic 45.0%
GTGGAAGGATCATCCTACTT+TGG - chr3.1:57675059-57675078 MS.gene057331:CDS 45.0%
TAAGCATTCTCGTTTGGCCA+TGG - chr3.1:57675268-57675287 MS.gene057331:CDS 45.0%
TGATGTCTATGTTCCCGTGA+TGG - chr3.1:57673973-57673992 MS.gene057331:intron 45.0%
TTGGCTGTTGAAGCTTTCAC+TGG - chr3.1:57673282-57673301 MS.gene057331:intron 45.0%
! AAGGTTCTAATGTTACCGGC+GGG - chr3.1:57673449-57673468 MS.gene057331:intron 45.0%
! ACTCTTCCCATGTTTGAGGT+TGG + chr3.1:57672877-57672896 None:intergenic 45.0%
! AGTGCCGAAAAAATGCGACA+TGG + chr3.1:57672842-57672861 None:intergenic 45.0%
! CAAGGTTCTAATGTTACCGG+CGG - chr3.1:57673448-57673467 MS.gene057331:intron 45.0%
! CCTGGGTATAACCTTTTCTC+TGG + chr3.1:57675176-57675195 None:intergenic 45.0%
!! AAGAAAGTGATGGGCTAGTG+TGG - chr3.1:57672971-57672990 MS.gene057331:CDS 45.0%
!! CTTAGGTGCTGGCTTTAACT+TGG + chr3.1:57672923-57672942 None:intergenic 45.0%
!! TCTGTGTAGCTTGTTGGGAA+GGG + chr3.1:57674344-57674363 None:intergenic 45.0%
!! TTCTGTGTAGCTTGTTGGGA+AGG + chr3.1:57674345-57674364 None:intergenic 45.0%
!!! CGGAGGTTTTTGGAATTCAG+AGG - chr3.1:57673202-57673221 MS.gene057331:intron 45.0%
!!! GCCACCATGTCGCATTTTTT+CGG - chr3.1:57672835-57672854 MS.gene057331:CDS 45.0%
AAACCGACACAGCACCATCA+CGG + chr3.1:57673990-57674009 None:intergenic 50.0%
AACATGTGTTCAACTCCCGC+CGG + chr3.1:57673467-57673486 None:intergenic 50.0%
ATTGTCCCATCGAGCCATTC+CGG + chr3.1:57673015-57673034 None:intergenic 50.0%
CAGAGCTTGACCCAGAGAAA+AGG - chr3.1:57675162-57675181 MS.gene057331:CDS 50.0%
GACCGTGGTTTCGATCCATT+GGG - chr3.1:57673042-57673061 MS.gene057331:CDS 50.0%
GCCGAAAAAATGCGACATGG+TGG + chr3.1:57672839-57672858 None:intergenic 50.0%
GGATCAGATACTGGAGTGTG+TGG - chr3.1:57674062-57674081 MS.gene057331:intron 50.0%
GTTCGTGCCTTCTTCAACCT+AGG - chr3.1:57672895-57672914 MS.gene057331:CDS 50.0%
TACACCGTTTCAGCCGTACA+CGG - chr3.1:57673182-57673201 MS.gene057331:intron 50.0%
TCAGAGGTTTCGTGAGTGTG+AGG - chr3.1:57673218-57673237 MS.gene057331:intron 50.0%
TGACCGTGGTTTCGATCCAT+TGG - chr3.1:57673041-57673060 MS.gene057331:CDS 50.0%
TGGCTCGATGGGACAATGAT+CGG - chr3.1:57673018-57673037 MS.gene057331:CDS 50.0%
TGTACGGCTGAAACGGTGTA+GGG + chr3.1:57673182-57673201 None:intergenic 50.0%
! CACTAGAGTGGAGAGTACAG+AGG - chr3.1:57673152-57673171 MS.gene057331:intron 50.0%
!! AAGCTTTCACTGGTGTCGCA+TGG - chr3.1:57673292-57673311 MS.gene057331:intron 50.0%
!! CATGGAAGATGGGCTATGCT+TGG - chr3.1:57673246-57673265 MS.gene057331:intron 50.0%
!! CTGGCTTTAACTTGGTGCCT+AGG + chr3.1:57672915-57672934 None:intergenic 50.0%
!! CTTGGTGCCTAGGTTGAAGA+AGG + chr3.1:57672905-57672924 None:intergenic 50.0%
!! GTTCAGGTAGAGTTGGTGGA+AGG - chr3.1:57675044-57675063 MS.gene057331:CDS 50.0%
AACCGACACAGCACCATCAC+GGG + chr3.1:57673989-57674008 None:intergenic 55.0%
ACCTCCGTGTACGGCTGAAA+CGG + chr3.1:57673189-57673208 None:intergenic 55.0%
CGCATGGCAAGATGCTGGAA+AGG - chr3.1:57673308-57673327 MS.gene057331:intron 55.0%
GCATTCTCGTTTGGCCATGG+TGG - chr3.1:57675271-57675290 MS.gene057331:CDS 55.0%
GGATCACTGGCCAAACCAAG+AGG + chr3.1:57675215-57675234 None:intergenic 55.0%
GTGTACGGCTGAAACGGTGT+AGG + chr3.1:57673183-57673202 None:intergenic 55.0%
! CAGCCGTACACGGAGGTTTT+TGG - chr3.1:57673192-57673211 MS.gene057331:intron 55.0%
!! AAAATGCGACATGGTGGCGG+CGG + chr3.1:57672833-57672852 None:intergenic 55.0%
!! GATGGGCTAGTGTGGTTTCC+TGG - chr3.1:57672979-57672998 MS.gene057331:CDS 55.0%
!! GCTTGGTGCTCTTGGTGCTT+TGG - chr3.1:57673263-57673282 MS.gene057331:intron 55.0%
!! GGTGCTGTGTCGGTTTCGTA+GGG - chr3.1:57673994-57674013 MS.gene057331:intron 55.0%
!! TGGGCTATGCTTGGTGCTCT+TGG - chr3.1:57673255-57673274 MS.gene057331:intron 55.0%
!! TGGTGCTGTGTCGGTTTCGT+AGG - chr3.1:57673993-57674012 MS.gene057331:intron 55.0%
!! TTCCCGTGATGGTGCTGTGT+CGG - chr3.1:57673984-57674003 MS.gene057331:intron 55.0%
ACCGTTTCAGCCGTACACGG+AGG - chr3.1:57673185-57673204 MS.gene057331:intron 60.0%
AGCCACCGGAATGGCTCGAT+GGG - chr3.1:57673007-57673026 MS.gene057331:CDS 60.0%
GGGACAATGATCGGTGACCG+TGG - chr3.1:57673027-57673046 MS.gene057331:CDS 60.0%
GTTTCCTGGTGCTCAGCCAC+CGG - chr3.1:57672993-57673012 MS.gene057331:CDS 60.0%
! GGTGTCGCATGGCAAGATGC+TGG - chr3.1:57673303-57673322 MS.gene057331:intron 60.0%
CAGCCACCGGAATGGCTCGA+TGG - chr3.1:57673006-57673025 MS.gene057331:CDS 65.0%
CATTCCGGTGGCTGAGCACC+AGG + chr3.1:57673000-57673019 None:intergenic 65.0%
CTGGTGCTCAGCCACCGGAA+TGG - chr3.1:57672998-57673017 MS.gene057331:CDS 65.0%
GTCCCATCGAGCCATTCCGG+TGG + chr3.1:57673012-57673031 None:intergenic 65.0%
!! CGACATGGTGGCGGCGGTTG+CGG + chr3.1:57672827-57672846 None:intergenic 70.0%
!! CATGGTGGCGGCGGTTGCGG+TGG + chr3.1:57672824-57672843 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 57672814 57675370 57672814 ID=MS.gene057331
chr3.1 mRNA 57672814 57675370 57672814 ID=MS.gene057331.t1;Parent=MS.gene057331
chr3.1 exon 57674855 57675370 57674855 ID=MS.gene057331.t1.exon1;Parent=MS.gene057331.t1
chr3.1 CDS 57674855 57675370 57674855 ID=cds.MS.gene057331.t1;Parent=MS.gene057331.t1
chr3.1 exon 57672814 57673134 57672814 ID=MS.gene057331.t1.exon2;Parent=MS.gene057331.t1
chr3.1 CDS 57672814 57673134 57672814 ID=cds.MS.gene057331.t1;Parent=MS.gene057331.t1
Gene Sequence

>MS.gene057331

ATGGCAACCACCGCAACCGCCGCCACCATGTCGCATTTTTTCGGCACTAGTCTATGCAAACCAACCTCAAACATGGGAAGAGTTCGTGCCTTCTTCAACCTAGGCACCAAGTTAAAGCCAGCACCTAAGAAAAAGGAAGTGAAAAAAGTGAGAAAACAAGAAAGTGATGGGCTAGTGTGGTTTCCTGGTGCTCAGCCACCGGAATGGCTCGATGGGACAATGATCGGTGACCGTGGTTTCGATCCATTGGGATTAGCCAAACCTGTTGAGTATTTGCAGTTTGATCTTGACTCACTTGACCAGAATTTGGCTAAGAACCTTGCAGGTGATATTATTGGCACTAGAGTGGAGAGTACAGAGGTTAACCCTACACCGTTTCAGCCGTACACGGAGGTTTTTGGAATTCAGAGGTTTCGTGAGTGTGAGGTTATTCATGGAAGATGGGCTATGCTTGGTGCTCTTGGTGCTTTGGCTGTTGAAGCTTTCACTGGTGTCGCATGGCAAGATGCTGGAAAGGTACTTTTTTATAACTCCTTTTCATTGTTGTTATTCAATCATAGTCATTAGATGAGTTTTCAAATTCATTAAGGTCAAGACCGAACATTAAGATTGAAAGAGCATTTACAAACACCAACAAGGTTCTAATGTTACCGGCGGGAGTTGAACACATGTTATTGCGGAGTATGAGTCAACTCTTTACCAATTAGACTAACATATTAGGCAGAGTTATATGTATTATTTAATTCATAGATTTGAAAATAAAAAGCATACCGATTCAAATATTGGATTAATTTAGTGTATGATTAATAAATTATGACATTTTATTATATTTATTAACTATCTTTTTTGACAAATATTCATTAACTATCTATTAATCATATATTTAATCTGCATAAACCATATAAATTTTTATCGGAATTTGTTATGTCAGATGTGATATGTGTTTGTGTCTAATATCGACACTCGTAATCTCATAATATCACATATAACTTTTTTTTGTCAAGTAGTATATAGTGGATAGAAATACAAATTTAAAATGAATAAGTATGGAGTGTCCGAGTTCGAGTTTGAACTCAGTCCTTACATATATAATACATTGTCTCTATTAAGTGAGTTATGTTCACATGAACTGCATATAACCTGTTGTAATCTTTATTATTGATGTCTATGTTCCCGTGATGGTGCTGTGTCGGTTTCGTAGGGCTTTACACTTTCATTTGTTCAATTGATCTTTCATTAACATCATTGGGATCAGATACTGGAGTGTGTGGAAATTAGAAGGGGAAACTATGTGACAAGACAGAGGAAATTGTATTTACATGTTGATTTTATGTGTATTAGCTACGGACAACGTAATATGGTCCCTAGGTCATGTATGTGATTCTGTCGCCAATATTCCTGGTTAAGCTTTTTGTATTACCGTGGTTTATATGGCTGAAGATGACTTATGAACCAAGAACGATGAAGACAAAAATTCACATTATTATTTGATTTGTAGGAGATTGTGTCATAATTATTTCTTTTGTTCCCTTCCCAACAAGCTACACAGAAAAAGTTCTTGAAAACTAAACATAATTTTTCTTTTAATCTTTAGTTAGGAATTATTATTAACAATGACACTAATGACGCATTTTAAAACTATTTCGTAAGAGATTTGAACTTTGTACTTTTTCTTTTGATCAACTTGAACTTTGTTCTTTGAAATTACAAAGTTAATCTTTTGCCATTGTCCGTTTTGTATAACAAAAAAATAAGTTTATGACTTATAGCTTATAAATTTGTATGATTAAAAAAGACTTGTTTGATATCTGTCATTTTCATACGAGTTTATAGCTTATTTTCATGAACTTGGTTTTTGATAAGCTAATTCAAGTAGTTTATAACTTAAAATTTATAGCTTATCATTTTTTATCTCCATTTTATCCTTGCAATCTTCATTGAAAAAATAAATAGTAATTAAATGCACATTTTTTTATTTCATTTCATATTTATAAGTTATCTCAATTGCTAATTTTTATTAAACACTACAAATTCAATCAGCTAGTTTATCCGCAATCAACTATAAACTAGCTTATAAGTCATGTTATAAGTTCATCCGCTATAAGGTAGTTTATCAGTTATCCGCTATTTTTTACAACGGAACCAAAATTAAAGACGGGCAAAGATGAAGTTAGTTAATTCAAAGAATATGTTCATTTTCTTTTTGTTCTTCTAACTACTATCTAACTATGTTCAGGTAGAGTTGGTGGAAGGATCATCCTACTTTGGATTTTCTCTTCCATTCTCAATTAGCACATTGATATGGATCGAAGTATTAGTAATTGGCTACATTGAGTTTCAAAGGAATGCAGAGCTTGACCCAGAGAAAAGGTTATACCCAGGTGGAAAGTTCTTTGATCCTCTTGGTTTGGCCAGTGATCCTGAAGAGAAAGAAAGACTTCAACTGGCAGAGATTAAGCATTCTCGTTTGGCCATGGTGGTTTTCCTCATCTTTGCAATTCAAGCTGCTGTTACAGGTAAAGGACCTATTGGTTTCATTGCCACCTTCAACCAGTGA

Protein sequence

>MS.gene057331.t1

MATTATAATMSHFFGTSLCKPTSNMGRVRAFFNLGTKLKPAPKKKEVKKVRKQESDGLVWFPGAQPPEWLDGTMIGDRGFDPLGLAKPVEYLQFDLDSLDQNLAKNLAGDIIGTRVESTEVNPTPFQPYTEVFGIQRFRECEVIHGRWAMLGALGALAVEAFTGVAWQDAGKVELVEGSSYFGFSLPFSISTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLASDPEEKERLQLAEIKHSRLAMVVFLIFAIQAAVTGKGPIGFIATFNQ