Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68443.t1 | XP_003591689.2 | 98.3 | 177 | 3 | 0 | 1 | 177 | 24 | 200 | 3.50E-93 | 350.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68443.t1 | G7I414 | 98.3 | 177 | 3 | 0 | 1 | 177 | 1 | 177 | 2.5e-93 | 350.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055224 | MS.gene68443 | 0.802763 | 4.81E-49 | -1.69E-46 |
| MS.gene056387 | MS.gene68443 | 0.801147 | 1.03E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68443.t1 | MTR_1g090630 | 98.305 | 177 | 3 | 0 | 1 | 177 | 1 | 177 | 2.23e-129 | 360 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68443.t1 | AT5G04830 | 68.000 | 175 | 56 | 0 | 1 | 175 | 1 | 175 | 1.47e-88 | 257 |
| MS.gene68443.t1 | AT5G04830 | 68.000 | 175 | 56 | 0 | 1 | 175 | 1 | 175 | 1.47e-88 | 257 |
Find 44 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCAAGCAATGGCAGCTTTA+CGG | 0.310362 | 1.1:-66101330 | None:intergenic |
| ACGGTTTCTCGATTAGAAAT+TGG | 0.320559 | 1.1:-66101311 | None:intergenic |
| TGCCCCAGATGCTTCCTTTG+AGG | 0.337499 | 1.1:+66099560 | MS.gene68443:CDS |
| CTCATGTGTTTATGAGGTTC+GGG | 0.344969 | 1.1:+66101393 | MS.gene68443:CDS |
| TAAACAACACTATAAAATCT+TGG | 0.356459 | 1.1:+66101115 | MS.gene68443:CDS |
| AAACAACACTATAAAATCTT+GGG | 0.358378 | 1.1:+66101116 | MS.gene68443:CDS |
| ACTCATGTGTTTATGAGGTT+CGG | 0.375084 | 1.1:+66101392 | MS.gene68443:CDS |
| CATACCCTTGTGCACGCATA+AGG | 0.386726 | 1.1:-66099587 | None:intergenic |
| GGATCCTCAAAGGAAGCATC+TGG | 0.400063 | 1.1:-66099564 | None:intergenic |
| ATCCTAGTTATTCAAACAGT+TGG | 0.403386 | 1.1:-66101422 | None:intergenic |
| CTTGGGGAAGGATATAGATA+TGG | 0.432777 | 1.1:+66101133 | MS.gene68443:CDS |
| AGAAAATTTGCAATGGATGC+TGG | 0.436427 | 1.1:+66098661 | None:intergenic |
| ATACCCTTGTGCACGCATAA+GGG | 0.439382 | 1.1:-66099586 | None:intergenic |
| TAGCAACTCATGTGTTTATG+AGG | 0.462800 | 1.1:+66101387 | MS.gene68443:CDS |
| ACCGTAAAGCTGCCATTGCT+TGG | 0.469791 | 1.1:+66101329 | MS.gene68443:CDS |
| AATATAGTTTCACCAGGAAA+AGG | 0.472637 | 1.1:+66100956 | MS.gene68443:CDS |
| AAGTTATTCGCCATGAGGAC+TGG | 0.509945 | 1.1:+66101189 | MS.gene68443:CDS |
| ACGAAGAATATGAGGAATGA+TGG | 0.519999 | 1.1:-66098837 | None:intergenic |
| GATCCTCAAAGGAAGCATCT+GGG | 0.532003 | 1.1:-66099563 | None:intergenic |
| GAGTTGCAGAAATGACTCGC+AGG | 0.539872 | 1.1:+66101354 | MS.gene68443:CDS |
| GCTTACAGACGAAGAATATG+AGG | 0.543719 | 1.1:-66098845 | None:intergenic |
| GTTTAGCGAGTCAAAGATTG+TGG | 0.554023 | 1.1:+66100916 | MS.gene68443:CDS |
| GATCCCCTTATGCGTGCACA+AGG | 0.558146 | 1.1:+66099582 | MS.gene68443:CDS |
| TACCCTTGTGCACGCATAAG+GGG | 0.564830 | 1.1:-66099585 | None:intergenic |
| AGCATTCTACTCTCTCCCTA+AGG | 0.568779 | 1.1:+66100526 | MS.gene68443:CDS |
| AATCAAGTTGTCTGTTGAGG+AGG | 0.578173 | 1.1:+66101163 | MS.gene68443:CDS |
| GATTTCAAAATCGCGAGCCG+TGG | 0.585966 | 1.1:-66099535 | None:intergenic |
| TGCGAGTCATTTCTGCAACT+CGG | 0.586117 | 1.1:-66101352 | None:intergenic |
| ACGCATAAGGGGATCCTCAA+AGG | 0.592676 | 1.1:-66099574 | None:intergenic |
| ATCCTCAAAGGAAGCATCTG+GGG | 0.592747 | 1.1:-66099562 | None:intergenic |
| TTAATACATACCAGTCCTCA+TGG | 0.594288 | 1.1:-66101199 | None:intergenic |
| GCTAATCAAGTTGTCTGTTG+AGG | 0.594764 | 1.1:+66101160 | MS.gene68443:CDS |
| TCTGCAACTCGGCCAAGCAA+TGG | 0.600748 | 1.1:-66101341 | None:intergenic |
| ACACTATAAAATCTTGGGGA+AGG | 0.605202 | 1.1:+66101121 | MS.gene68443:CDS |
| ATCAAGTTGTCTGTTGAGGA+GGG | 0.610196 | 1.1:+66101164 | MS.gene68443:CDS |
| AACAACACTATAAAATCTTG+GGG | 0.612536 | 1.1:+66101117 | MS.gene68443:CDS |
| AGTTGCAGAAATGACTCGCA+GGG | 0.615808 | 1.1:+66101355 | MS.gene68443:CDS |
| GAAGAAAATATAGTTTCACC+AGG | 0.619089 | 1.1:+66100950 | MS.gene68443:CDS |
| TGTGTTTATGAGGTTCGGGA+AGG | 0.634450 | 1.1:+66101397 | MS.gene68443:CDS |
| CAGATATGGATCATGTGCCA+CGG | 0.643521 | 1.1:+66099518 | MS.gene68443:intron |
| AGTTTCACCAGGAAAAGGAG+AGG | 0.669375 | 1.1:+66100961 | MS.gene68443:CDS |
| GGGTAAAGTTATTCGCCATG+AGG | 0.689924 | 1.1:+66101184 | MS.gene68443:CDS |
| ATCCCCTTATGCGTGCACAA+GGG | 0.714021 | 1.1:+66099583 | MS.gene68443:CDS |
| GTTGCAGAAATGACTCGCAG+GGG | 0.731921 | 1.1:+66101356 | MS.gene68443:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTATTTACTTTTTTTTAG+CGG | + | chr1.1:66099283-66099302 | MS.gene68443:intron | 10.0% |
| !! | AATATGATAGAAATACAAAT+TGG | - | chr1.1:66098902-66098921 | None:intergenic | 15.0% |
| !!! | CAAATTTTTTACTAGAAAAA+GGG | - | chr1.1:66100172-66100191 | None:intergenic | 15.0% |
| !!! | TTCAAATTCTGTTTTATTTA+TGG | + | chr1.1:66100429-66100448 | MS.gene68443:intron | 15.0% |
| !! | AAACAACACTATAAAATCTT+GGG | + | chr1.1:66101116-66101135 | MS.gene68443:CDS | 20.0% |
| !! | AACATCATGAAATATGAATT+TGG | - | chr1.1:66101075-66101094 | None:intergenic | 20.0% |
| !! | ATTTGAATGATCTAAATAGT+TGG | - | chr1.1:66100416-66100435 | None:intergenic | 20.0% |
| !! | CAATTTCATATTCTAACATA+TGG | - | chr1.1:66099927-66099946 | None:intergenic | 20.0% |
| !! | GTAAAAAATTTGCCAATATT+TGG | + | chr1.1:66100180-66100199 | MS.gene68443:intron | 20.0% |
| !! | TAAACAACACTATAAAATCT+TGG | + | chr1.1:66101115-66101134 | MS.gene68443:CDS | 20.0% |
| !! | TAACAAGAAAGAAAGAAATT+AGG | - | chr1.1:66098709-66098728 | None:intergenic | 20.0% |
| !! | TCAATAGGTTTATATTATTG+CGG | - | chr1.1:66100350-66100369 | None:intergenic | 20.0% |
| !!! | AGTAATAATTTGCTACATTA+TGG | - | chr1.1:66099362-66099381 | None:intergenic | 20.0% |
| !!! | GCAAATTTTTTACTAGAAAA+AGG | - | chr1.1:66100173-66100192 | None:intergenic | 20.0% |
| !!! | GGAAATTGACAATTTTTTTT+AGG | - | chr1.1:66100146-66100165 | None:intergenic | 20.0% |
| !!! | GTTTTGTATTTACATCAAAT+AGG | + | chr1.1:66101276-66101295 | MS.gene68443:intron | 20.0% |
| !!! | TATTTTGTATTGACGATTTT+AGG | - | chr1.1:66099640-66099659 | None:intergenic | 20.0% |
| ! | AACAACACTATAAAATCTTG+GGG | + | chr1.1:66101117-66101136 | MS.gene68443:CDS | 25.0% |
| ! | ACTACAGAATGATAAAGAAT+AGG | + | chr1.1:66100096-66100115 | MS.gene68443:intron | 25.0% |
| ! | AGGAATTATTATTGCCAAAA+AGG | - | chr1.1:66101243-66101262 | None:intergenic | 25.0% |
| ! | AGGTGAACTATGAAATAAAT+TGG | + | chr1.1:66099757-66099776 | MS.gene68443:intron | 25.0% |
| ! | AGGTTCTTTACATACATATA+AGG | - | chr1.1:66100221-66100240 | None:intergenic | 25.0% |
| ! | CTACAGAATGATAAAGAATA+GGG | + | chr1.1:66100097-66100116 | MS.gene68443:intron | 25.0% |
| ! | CTGGTATGATATTAAACAAT+GGG | + | chr1.1:66099696-66099715 | MS.gene68443:intron | 25.0% |
| ! | GGTTCTTTACATACATATAA+GGG | - | chr1.1:66100220-66100239 | None:intergenic | 25.0% |
| ! | TACACCAACTTTCTAATTTA+AGG | - | chr1.1:66100718-66100737 | None:intergenic | 25.0% |
| ! | TACATACATATAAGGGAAAA+GGG | - | chr1.1:66100213-66100232 | None:intergenic | 25.0% |
| ! | TATGATATTAAACAATGGGA+AGG | + | chr1.1:66099700-66099719 | MS.gene68443:intron | 25.0% |
| ! | TCTGGTATGATATTAAACAA+TGG | + | chr1.1:66099695-66099714 | MS.gene68443:intron | 25.0% |
| ! | TGTATTTACATCAAATAGGT+GGG | + | chr1.1:66101280-66101299 | MS.gene68443:intron | 25.0% |
| ! | TTACATACATATAAGGGAAA+AGG | - | chr1.1:66100214-66100233 | None:intergenic | 25.0% |
| ! | TTATGGAAATAAACTTCTCA+CGG | - | chr1.1:66099345-66099364 | None:intergenic | 25.0% |
| ! | TTCCTTCAAATTCAAGAAAA+CGG | - | chr1.1:66098760-66098779 | None:intergenic | 25.0% |
| ! | TTGAAGTTATAAGCAATACA+AGG | - | chr1.1:66099433-66099452 | None:intergenic | 25.0% |
| ! | TTGAATCTTAATCAGAAAAG+AGG | + | chr1.1:66099851-66099870 | MS.gene68443:intron | 25.0% |
| ! | TTGTATTTACATCAAATAGG+TGG | + | chr1.1:66101279-66101298 | MS.gene68443:intron | 25.0% |
| !! | TATGGATACATTCTGTTTTA+GGG | + | chr1.1:66100447-66100466 | MS.gene68443:intron | 25.0% |
| !! | TCAAGACTTTTATTATTCCA+TGG | - | chr1.1:66100661-66100680 | None:intergenic | 25.0% |
| !! | TTATGGATACATTCTGTTTT+AGG | + | chr1.1:66100446-66100465 | MS.gene68443:intron | 25.0% |
| !! | TTTTATTATTCCATGGCTAT+GGG | - | chr1.1:66100654-66100673 | None:intergenic | 25.0% |
| !! | TTTTTACTAGAAAAAGGGAA+TGG | - | chr1.1:66100167-66100186 | None:intergenic | 25.0% |
| !!! | ATAAAGAGAACTGTTTTAAC+TGG | - | chr1.1:66100779-66100798 | None:intergenic | 25.0% |
| !!! | TTTACTTTTTTTTAGCGGAA+TGG | + | chr1.1:66099288-66099307 | MS.gene68443:intron | 25.0% |
| !!! | TTTTAAAAAATGATGCTGCA+GGG | + | chr1.1:66100487-66100506 | MS.gene68443:intron | 25.0% |
| !!! | TTTTTAAAAAATGATGCTGC+AGG | + | chr1.1:66100486-66100505 | MS.gene68443:intron | 25.0% |
| AAGAGGTAATGAAAACCTTA+GGG | - | chr1.1:66100544-66100563 | None:intergenic | 30.0% | |
| AATATAGTTTCACCAGGAAA+AGG | + | chr1.1:66100956-66100975 | MS.gene68443:CDS | 30.0% | |
| ACTGCCTTAAATTAGAAAGT+TGG | + | chr1.1:66100711-66100730 | MS.gene68443:intron | 30.0% | |
| ATTAAATGTAACCACATGTC+TGG | - | chr1.1:66098987-66099006 | None:intergenic | 30.0% | |
| CTAAGAAACAAGGAGATAAA+AGG | - | chr1.1:66100894-66100913 | None:intergenic | 30.0% | |
| CTTGTACGATGTTATATATC+TGG | + | chr1.1:66099677-66099696 | MS.gene68443:intron | 30.0% | |
| GAAAGAAAGAAATTAGGATG+AGG | - | chr1.1:66098703-66098722 | None:intergenic | 30.0% | |
| GAAGAAAATATAGTTTCACC+AGG | + | chr1.1:66100950-66100969 | MS.gene68443:CDS | 30.0% | |
| GCATATTGACACAAAAACTT+AGG | - | chr1.1:66100272-66100291 | None:intergenic | 30.0% | |
| GTAACATTAATATCATGCCA+AGG | - | chr1.1:66099980-66099999 | None:intergenic | 30.0% | |
| TAAGAGGTAATGAAAACCTT+AGG | - | chr1.1:66100545-66100564 | None:intergenic | 30.0% | |
| TACAAAAAAGCTCCTAGATT+TGG | - | chr1.1:66100040-66100059 | None:intergenic | 30.0% | |
| TAGGTTTATATTATTGCGGA+AGG | - | chr1.1:66100346-66100365 | None:intergenic | 30.0% | |
| TATTGCCAAAAAGGAACATA+AGG | - | chr1.1:66101234-66101253 | None:intergenic | 30.0% | |
| TCATAGTTCACCTTTCTATT+GGG | - | chr1.1:66099750-66099769 | None:intergenic | 30.0% | |
| TGGCAATAATAATTCCTGAT+GGG | + | chr1.1:66101246-66101265 | MS.gene68443:intron | 30.0% | |
| TTCATAGTTCACCTTTCTAT+TGG | - | chr1.1:66099751-66099770 | None:intergenic | 30.0% | |
| TTGGCAATAATAATTCCTGA+TGG | + | chr1.1:66101245-66101264 | MS.gene68443:intron | 30.0% | |
| ! | CTTTTATTATTCCATGGCTA+TGG | - | chr1.1:66100655-66100674 | None:intergenic | 30.0% |
| ! | TATTCTTATTGTATCGACGT+TGG | + | chr1.1:66099485-66099504 | MS.gene68443:intron | 30.0% |
| ! | TTCCGTTTTCTTGAATTTGA+AGG | + | chr1.1:66098755-66098774 | MS.gene68443:intron | 30.0% |
| !! | GATTTTAGGAAAGACGAAAA+GGG | - | chr1.1:66099626-66099645 | None:intergenic | 30.0% |
| AATGAAGATCAACGTGAAGA+AGG | - | chr1.1:66100583-66100602 | None:intergenic | 35.0% | |
| AATGTATACGAGTGTGGAAT+AGG | - | chr1.1:66100297-66100316 | None:intergenic | 35.0% | |
| ACACTATAAAATCTTGGGGA+AGG | + | chr1.1:66101121-66101140 | MS.gene68443:CDS | 35.0% | |
| ACGAAGAATATGAGGAATGA+TGG | - | chr1.1:66098840-66098859 | None:intergenic | 35.0% | |
| ACGGTTTCTCGATTAGAAAT+TGG | - | chr1.1:66101314-66101333 | None:intergenic | 35.0% | |
| ACTCATGTGTTTATGAGGTT+CGG | + | chr1.1:66101392-66101411 | MS.gene68443:CDS | 35.0% | |
| ATGTAAAAATAGGCCTTGAC+AGG | - | chr1.1:66100241-66100260 | None:intergenic | 35.0% | |
| ATGTCCCAATGTGCATATAA+TGG | + | chr1.1:66100072-66100091 | MS.gene68443:intron | 35.0% | |
| CAAAAAGGAACATAAGGCTA+AGG | - | chr1.1:66101228-66101247 | None:intergenic | 35.0% | |
| CAGAATGATAAAGAATAGGG+AGG | + | chr1.1:66100100-66100119 | MS.gene68443:intron | 35.0% | |
| CTAGCTCACTGAAATTGATA+CGG | - | chr1.1:66099088-66099107 | None:intergenic | 35.0% | |
| GAGACAAAGTGATTGATAAG+AGG | - | chr1.1:66100561-66100580 | None:intergenic | 35.0% | |
| GATTATAGCCTATAAAGCAC+CGG | - | chr1.1:66099233-66099252 | None:intergenic | 35.0% | |
| TACTAGTGTGCTATGTCTTA+TGG | + | chr1.1:66099378-66099397 | MS.gene68443:intron | 35.0% | |
| TAGCAACTCATGTGTTTATG+AGG | + | chr1.1:66101387-66101406 | MS.gene68443:CDS | 35.0% | |
| TAGCTCACTGAAATTGATAC+GGG | - | chr1.1:66099087-66099106 | None:intergenic | 35.0% | |
| TGTATGTAAAGAACCTGTCA+AGG | + | chr1.1:66100225-66100244 | MS.gene68443:intron | 35.0% | |
| TTAATACATACCAGTCCTCA+TGG | - | chr1.1:66101202-66101221 | None:intergenic | 35.0% | |
| TTCAAGTGTACCCAATAGAA+AGG | + | chr1.1:66099737-66099756 | MS.gene68443:intron | 35.0% | |
| TTGGTGTGGTATTTCAGATA+TGG | + | chr1.1:66099504-66099523 | MS.gene68443:intron | 35.0% | |
| TTGTTGTCTATGCTTCTTGA+TGG | + | chr1.1:66099879-66099898 | MS.gene68443:intron | 35.0% | |
| ! | AAAAGCTCCTAGATTTGGTT+AGG | - | chr1.1:66100035-66100054 | None:intergenic | 35.0% |
| ! | AAAGCTCCTAGATTTGGTTA+GGG | - | chr1.1:66100034-66100053 | None:intergenic | 35.0% |
| ! | AAGGGAAGTATGCCAAATAT+TGG | - | chr1.1:66100195-66100214 | None:intergenic | 35.0% |
| ! | AGTGCCATTATATGCACATT+GGG | - | chr1.1:66100079-66100098 | None:intergenic | 35.0% |
| ! | CAAATTGGCGTTAAGTATTG+TGG | - | chr1.1:66098887-66098906 | None:intergenic | 35.0% |
| ! | TAGTGCCATTATATGCACAT+TGG | - | chr1.1:66100080-66100099 | None:intergenic | 35.0% |
| ! | TTCTTTTACAGTGCTAACCT+TGG | + | chr1.1:66099960-66099979 | MS.gene68443:intron | 35.0% |
| ! | TTGTACTACTCTTTTGAGCA+TGG | + | chr1.1:66100388-66100407 | MS.gene68443:intron | 35.0% |
| !! | CGATTTTAGGAAAGACGAAA+AGG | - | chr1.1:66099627-66099646 | None:intergenic | 35.0% |
| !! | GGCTTGCTGAATGTAAAAAT+AGG | - | chr1.1:66100251-66100270 | None:intergenic | 35.0% |
| !!! | AGCAATAGATTTTTTGGCAG+TGG | - | chr1.1:66098813-66098832 | None:intergenic | 35.0% |
| !!! | CTTAGCCTTATGTTCCTTTT+TGG | + | chr1.1:66101226-66101245 | MS.gene68443:intron | 35.0% |
| !!! | GGCATCAGCAATAGATTTTT+TGG | - | chr1.1:66098819-66098838 | None:intergenic | 35.0% |
| !!! | GTTTTGAAAACTCAGTATCC+TGG | - | chr1.1:66099173-66099192 | None:intergenic | 35.0% |
| ACAAAACTTAGTCACCCATC+AGG | - | chr1.1:66101263-66101282 | None:intergenic | 40.0% | |
| AGCTAACTGCTATCGTCAAT+AGG | - | chr1.1:66100365-66100384 | None:intergenic | 40.0% | |
| AGCTCACTGAAATTGATACG+GGG | - | chr1.1:66099086-66099105 | None:intergenic | 40.0% | |
| CAATCCCATTGTCTACTTGA+GGG | - | chr1.1:66099125-66099144 | None:intergenic | 40.0% | |
| CATTGGGACATCAAATTTGG+TGG | - | chr1.1:66100063-66100082 | None:intergenic | 40.0% | |
| CGCTAAACAGCTAAGAAACA+AGG | - | chr1.1:66100904-66100923 | None:intergenic | 40.0% | |
| CTAAATAGAACCCATAGCCA+TGG | + | chr1.1:66100641-66100660 | MS.gene68443:intron | 40.0% | |
| CTCATGTGTTTATGAGGTTC+GGG | + | chr1.1:66101393-66101412 | MS.gene68443:CDS | 40.0% | |
| CTTGGGGAAGGATATAGATA+TGG | + | chr1.1:66101133-66101152 | MS.gene68443:CDS | 40.0% | |
| GCACATTGGGACATCAAATT+TGG | - | chr1.1:66100066-66100085 | None:intergenic | 40.0% | |
| GCCACAAATATGCTGGTATA+GGG | - | chr1.1:66100324-66100343 | None:intergenic | 40.0% | |
| GCTTACAGACGAAGAATATG+AGG | - | chr1.1:66098848-66098867 | None:intergenic | 40.0% | |
| GGATCAAATGTATACGAGTG+TGG | - | chr1.1:66100303-66100322 | None:intergenic | 40.0% | |
| GGGGCTATAAGTCTTTATCA+TGG | - | chr1.1:66100014-66100033 | None:intergenic | 40.0% | |
| GTGTCATCACTCAATGTCTT+AGG | + | chr1.1:66099052-66099071 | MS.gene68443:intron | 40.0% | |
| GTGTGCTATGTCTTATGGTT+TGG | + | chr1.1:66099383-66099402 | MS.gene68443:intron | 40.0% | |
| GTTTAGCGAGTCAAAGATTG+TGG | + | chr1.1:66100916-66100935 | MS.gene68443:CDS | 40.0% | |
| TACTTGAGGGAGTCGTTTAA+TGG | - | chr1.1:66099112-66099131 | None:intergenic | 40.0% | |
| TATAGCCCCTAACCAAATCT+AGG | + | chr1.1:66100025-66100044 | MS.gene68443:intron | 40.0% | |
| TCCCTATACCAGCATATTTG+TGG | + | chr1.1:66100320-66100339 | MS.gene68443:intron | 40.0% | |
| TGTCATGTCCTTGTCTTTAC+CGG | + | chr1.1:66099211-66099230 | MS.gene68443:intron | 40.0% | |
| TGTCTTTACCGGTGCTTTAT+AGG | + | chr1.1:66099222-66099241 | MS.gene68443:intron | 40.0% | |
| ! | AAGCTCCTAGATTTGGTTAG+GGG | - | chr1.1:66100033-66100052 | None:intergenic | 40.0% |
| ! | AATCAAGTTGTCTGTTGAGG+AGG | + | chr1.1:66101163-66101182 | MS.gene68443:CDS | 40.0% |
| ! | ATCAAGTTGTCTGTTGAGGA+GGG | + | chr1.1:66101164-66101183 | MS.gene68443:CDS | 40.0% |
| ! | CTTATGGTTTGGATCATGCT+AGG | + | chr1.1:66099394-66099413 | MS.gene68443:intron | 40.0% |
| ! | GCTAATCAAGTTGTCTGTTG+AGG | + | chr1.1:66101160-66101179 | MS.gene68443:CDS | 40.0% |
| ! | TTACTAACCTCTCCTTTTCC+TGG | - | chr1.1:66100971-66100990 | None:intergenic | 40.0% |
| ! | TTATTGTATCGACGTTGGTG+TGG | + | chr1.1:66099490-66099509 | MS.gene68443:intron | 40.0% |
| !! | ATAAAGCACCGGTAAAGACA+AGG | - | chr1.1:66099222-66099241 | None:intergenic | 40.0% |
| !! | GCTTCTTGATGGTGAAATCA+CGG | + | chr1.1:66099890-66099909 | MS.gene68443:intron | 40.0% |
| AAGTTATTCGCCATGAGGAC+TGG | + | chr1.1:66101189-66101208 | MS.gene68443:CDS | 45.0% | |
| AGACAATGGGATTGGACCTT+CGG | + | chr1.1:66099131-66099150 | MS.gene68443:intron | 45.0% | |
| AGCATTCTACTCTCTCCCTA+AGG | + | chr1.1:66100526-66100545 | MS.gene68443:CDS | 45.0% | |
| AGTTGCAGAAATGACTCGCA+GGG | + | chr1.1:66101355-66101374 | MS.gene68443:CDS | 45.0% | |
| AGTTTCACCAGGAAAAGGAG+AGG | + | chr1.1:66100961-66100980 | MS.gene68443:CDS | 45.0% | |
| ATACCCTTGTGCACGCATAA+GGG | - | chr1.1:66099589-66099608 | None:intergenic | 45.0% | |
| CAGATATGGATCATGTGCCA+CGG | + | chr1.1:66099518-66099537 | MS.gene68443:intron | 45.0% | |
| CCAAAGACTGACTATTCCGA+AGG | - | chr1.1:66099150-66099169 | None:intergenic | 45.0% | |
| CCAATCCCATTGTCTACTTG+AGG | - | chr1.1:66099126-66099145 | None:intergenic | 45.0% | |
| CCTCAAGTAGACAATGGGAT+TGG | + | chr1.1:66099123-66099142 | MS.gene68443:intron | 45.0% | |
| CCTTCGGAATAGTCAGTCTT+TGG | + | chr1.1:66099147-66099166 | MS.gene68443:intron | 45.0% | |
| GACTCCCTCAAGTAGACAAT+GGG | + | chr1.1:66099118-66099137 | MS.gene68443:intron | 45.0% | |
| GCTCACTGAAATTGATACGG+GGG | - | chr1.1:66099085-66099104 | None:intergenic | 45.0% | |
| GGCCACAAATATGCTGGTAT+AGG | - | chr1.1:66100325-66100344 | None:intergenic | 45.0% | |
| GGGTAAAGTTATTCGCCATG+AGG | + | chr1.1:66101184-66101203 | MS.gene68443:CDS | 45.0% | |
| GTGCTTGCTTGATCTCTTAG+TGG | + | chr1.1:66101044-66101063 | MS.gene68443:intron | 45.0% | |
| TGCGAGTCATTTCTGCAACT+CGG | - | chr1.1:66101355-66101374 | None:intergenic | 45.0% | |
| TGTGTTTATGAGGTTCGGGA+AGG | + | chr1.1:66101397-66101416 | MS.gene68443:CDS | 45.0% | |
| TTAGGAAAGACGAAAAGGGC+AGG | - | chr1.1:66099622-66099641 | None:intergenic | 45.0% | |
| !! | ATCCTCAAAGGAAGCATCTG+GGG | - | chr1.1:66099565-66099584 | None:intergenic | 45.0% |
| !! | GATCCTCAAAGGAAGCATCT+GGG | - | chr1.1:66099566-66099585 | None:intergenic | 45.0% |
| ACCGTAAAGCTGCCATTGCT+TGG | + | chr1.1:66101329-66101348 | MS.gene68443:CDS | 50.0% | |
| ACGCATAAGGGGATCCTCAA+AGG | - | chr1.1:66099577-66099596 | None:intergenic | 50.0% | |
| ATCCCCTTATGCGTGCACAA+GGG | + | chr1.1:66099583-66099602 | MS.gene68443:CDS | 50.0% | |
| CATACCCTTGTGCACGCATA+AGG | - | chr1.1:66099590-66099609 | None:intergenic | 50.0% | |
| CGACTCCCTCAAGTAGACAA+TGG | + | chr1.1:66099117-66099136 | MS.gene68443:intron | 50.0% | |
| GAGTTGCAGAAATGACTCGC+AGG | + | chr1.1:66101354-66101373 | MS.gene68443:CDS | 50.0% | |
| GATTTCAAAATCGCGAGCCG+TGG | - | chr1.1:66099538-66099557 | None:intergenic | 50.0% | |
| GCCAAGCAATGGCAGCTTTA+CGG | - | chr1.1:66101333-66101352 | None:intergenic | 50.0% | |
| GGAATAGTCAGTCTTTGGCC+AGG | + | chr1.1:66099152-66099171 | MS.gene68443:intron | 50.0% | |
| GTTGCAGAAATGACTCGCAG+GGG | + | chr1.1:66101356-66101375 | MS.gene68443:CDS | 50.0% | |
| TACCCTTGTGCACGCATAAG+GGG | - | chr1.1:66099588-66099607 | None:intergenic | 50.0% | |
| !! | GGATCCTCAAAGGAAGCATC+TGG | - | chr1.1:66099567-66099586 | None:intergenic | 50.0% |
| GATCCCCTTATGCGTGCACA+AGG | + | chr1.1:66099582-66099601 | MS.gene68443:CDS | 55.0% | |
| GCGGAAGGCCACAAATATGC+TGG | - | chr1.1:66100331-66100350 | None:intergenic | 55.0% | |
| TCTGCAACTCGGCCAAGCAA+TGG | - | chr1.1:66101344-66101363 | None:intergenic | 55.0% | |
| TGCCCCAGATGCTTCCTTTG+AGG | + | chr1.1:66099560-66099579 | MS.gene68443:CDS | 55.0% | |
| ! | CTGGCTCGCTTCAGAAGTGT+TGG | - | chr1.1:66098968-66098987 | None:intergenic | 55.0% |
| ! | TCTGAAGCGAGCCAGACATG+TGG | + | chr1.1:66098973-66098992 | MS.gene68443:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 66098673 | 66101433 | 66098673 | ID=MS.gene68443 |
| chr1.1 | mRNA | 66098673 | 66101433 | 66098673 | ID=MS.gene68443.t1;Parent=MS.gene68443 |
| chr1.1 | exon | 66098673 | 66098682 | 66098673 | ID=MS.gene68443.t1.exon1;Parent=MS.gene68443.t1 |
| chr1.1 | CDS | 66098673 | 66098682 | 66098673 | ID=cds.MS.gene68443.t1;Parent=MS.gene68443.t1 |
| chr1.1 | exon | 66098777 | 66098861 | 66098777 | ID=MS.gene68443.t1.exon2;Parent=MS.gene68443.t1 |
| chr1.1 | CDS | 66098777 | 66098861 | 66098777 | ID=cds.MS.gene68443.t1;Parent=MS.gene68443.t1 |
| chr1.1 | exon | 66099521 | 66099604 | 66099521 | ID=MS.gene68443.t1.exon3;Parent=MS.gene68443.t1 |
| chr1.1 | CDS | 66099521 | 66099604 | 66099521 | ID=cds.MS.gene68443.t1;Parent=MS.gene68443.t1 |
| chr1.1 | exon | 66100508 | 66100547 | 66100508 | ID=MS.gene68443.t1.exon4;Parent=MS.gene68443.t1 |
| chr1.1 | CDS | 66100508 | 66100547 | 66100508 | ID=cds.MS.gene68443.t1;Parent=MS.gene68443.t1 |
| chr1.1 | exon | 66100914 | 66100982 | 66100914 | ID=MS.gene68443.t1.exon5;Parent=MS.gene68443.t1 |
| chr1.1 | CDS | 66100914 | 66100982 | 66100914 | ID=cds.MS.gene68443.t1;Parent=MS.gene68443.t1 |
| chr1.1 | exon | 66101101 | 66101210 | 66101101 | ID=MS.gene68443.t1.exon6;Parent=MS.gene68443.t1 |
| chr1.1 | CDS | 66101101 | 66101210 | 66101101 | ID=cds.MS.gene68443.t1;Parent=MS.gene68443.t1 |
| chr1.1 | exon | 66101298 | 66101433 | 66101298 | ID=MS.gene68443.t1.exon7;Parent=MS.gene68443.t1 |
| chr1.1 | CDS | 66101298 | 66101433 | 66101298 | ID=cds.MS.gene68443.t1;Parent=MS.gene68443.t1 |
| Gene Sequence |
| Protein sequence |
