Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68501.t1 | XP_024635359.1 | 89.5 | 285 | 30 | 0 | 1 | 285 | 650 | 934 | 1.10E-141 | 512.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68501.t1 | Q39214 | 29.6 | 226 | 149 | 4 | 55 | 277 | 697 | 915 | 5.2e-15 | 83.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68501.t1 | G7J226 | 89.5 | 285 | 30 | 0 | 1 | 285 | 650 | 934 | 8.0e-142 | 512.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056856 | MS.gene68501 | 0.803891 | 2.81E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68501.t1 | MTR_3g056310 | 89.474 | 285 | 30 | 0 | 1 | 285 | 650 | 934 | 6.98e-180 | 520 |
| MS.gene68501.t1 | MTR_3g056200 | 72.727 | 275 | 71 | 4 | 1 | 273 | 648 | 920 | 2.17e-120 | 366 |
| MS.gene68501.t1 | MTR_3g056620 | 71.377 | 276 | 78 | 1 | 1 | 275 | 669 | 944 | 3.36e-116 | 356 |
| MS.gene68501.t1 | MTR_3g056380 | 68.000 | 275 | 83 | 3 | 1 | 273 | 646 | 917 | 7.81e-114 | 349 |
| MS.gene68501.t1 | MTR_3g056320 | 68.841 | 276 | 83 | 3 | 1 | 273 | 653 | 928 | 1.74e-113 | 348 |
| MS.gene68501.t1 | MTR_3g056190 | 67.407 | 270 | 78 | 5 | 1 | 264 | 658 | 923 | 2.11e-102 | 319 |
| MS.gene68501.t1 | MTR_3g056410 | 59.286 | 280 | 106 | 4 | 1 | 279 | 611 | 883 | 1.01e-91 | 290 |
| MS.gene68501.t1 | MTR_3g056360 | 59.286 | 280 | 106 | 4 | 1 | 279 | 620 | 892 | 2.86e-91 | 289 |
| MS.gene68501.t1 | MTR_3g056180 | 64.017 | 239 | 74 | 4 | 38 | 274 | 72 | 300 | 2.67e-84 | 255 |
| MS.gene68501.t1 | MTR_3g056610 | 60.952 | 210 | 45 | 1 | 1 | 210 | 484 | 656 | 9.59e-71 | 230 |
| MS.gene68501.t1 | MTR_3g056585 | 50.362 | 276 | 124 | 6 | 1 | 272 | 638 | 904 | 2.88e-64 | 217 |
| MS.gene68501.t1 | MTR_1g078150 | 50.000 | 242 | 105 | 5 | 1 | 237 | 450 | 680 | 5.62e-58 | 197 |
| MS.gene68501.t1 | MTR_3g056625 | 48.988 | 247 | 109 | 5 | 1 | 241 | 336 | 571 | 3.99e-56 | 190 |
| MS.gene68501.t1 | MTR_3g056590 | 49.012 | 253 | 115 | 5 | 1 | 246 | 659 | 904 | 2.28e-55 | 192 |
| MS.gene68501.t1 | MTR_3g069210 | 46.209 | 277 | 132 | 8 | 1 | 273 | 637 | 900 | 2.34e-54 | 189 |
| MS.gene68501.t1 | MTR_3g456030 | 43.706 | 286 | 147 | 6 | 1 | 284 | 643 | 916 | 7.73e-54 | 188 |
| MS.gene68501.t1 | MTR_1g078190 | 49.407 | 253 | 108 | 8 | 1 | 246 | 659 | 898 | 1.90e-52 | 184 |
| MS.gene68501.t1 | MTR_3g456070 | 49.160 | 238 | 110 | 4 | 1 | 237 | 487 | 714 | 2.27e-52 | 182 |
| MS.gene68501.t1 | MTR_3g455910 | 49.160 | 238 | 110 | 4 | 1 | 237 | 567 | 794 | 1.27e-51 | 181 |
| MS.gene68501.t1 | MTR_5g092950 | 48.780 | 246 | 111 | 6 | 1 | 241 | 207 | 442 | 2.96e-50 | 172 |
| MS.gene68501.t1 | MTR_3g055720 | 48.101 | 237 | 113 | 5 | 1 | 237 | 644 | 870 | 6.82e-50 | 176 |
| MS.gene68501.t1 | MTR_3g055930 | 43.262 | 282 | 142 | 6 | 1 | 274 | 663 | 934 | 7.31e-50 | 176 |
| MS.gene68501.t1 | MTR_3g055830 | 47.257 | 237 | 114 | 4 | 1 | 237 | 641 | 866 | 9.52e-50 | 176 |
| MS.gene68501.t1 | MTR_3g456080 | 48.198 | 222 | 104 | 3 | 1 | 220 | 78 | 290 | 1.27e-48 | 163 |
| MS.gene68501.t1 | MTR_3g011280 | 38.811 | 286 | 152 | 4 | 1 | 273 | 616 | 891 | 1.87e-45 | 164 |
| MS.gene68501.t1 | MTR_3g011280 | 38.811 | 286 | 152 | 4 | 1 | 273 | 648 | 923 | 2.23e-45 | 164 |
| MS.gene68501.t1 | MTR_3g055740 | 45.798 | 238 | 119 | 4 | 1 | 237 | 585 | 813 | 4.88e-45 | 162 |
| MS.gene68501.t1 | MTR_3g011460 | 40.493 | 284 | 146 | 5 | 1 | 271 | 647 | 920 | 1.28e-44 | 161 |
| MS.gene68501.t1 | MTR_3g011270 | 40.972 | 288 | 144 | 5 | 1 | 275 | 647 | 921 | 3.35e-44 | 160 |
| MS.gene68501.t1 | MTR_3g011390 | 37.762 | 286 | 155 | 5 | 1 | 273 | 650 | 925 | 5.61e-44 | 160 |
| MS.gene68501.t1 | MTR_3g019340 | 38.652 | 282 | 150 | 4 | 1 | 269 | 602 | 873 | 8.23e-41 | 150 |
| MS.gene68501.t1 | MTR_0691s0020 | 39.236 | 288 | 149 | 6 | 1 | 275 | 648 | 922 | 2.72e-40 | 149 |
| MS.gene68501.t1 | MTR_3g011360 | 37.234 | 282 | 154 | 5 | 1 | 269 | 616 | 887 | 3.56e-39 | 146 |
| MS.gene68501.t1 | MTR_3g011480 | 40.780 | 282 | 144 | 4 | 1 | 269 | 647 | 918 | 3.98e-39 | 145 |
| MS.gene68501.t1 | MTR_3g011420 | 35.862 | 290 | 163 | 4 | 1 | 277 | 649 | 928 | 7.02e-39 | 145 |
| MS.gene68501.t1 | MTR_3g011370 | 38.298 | 282 | 151 | 4 | 1 | 269 | 648 | 919 | 8.67e-39 | 145 |
| MS.gene68501.t1 | MTR_1g011990 | 41.909 | 241 | 102 | 5 | 1 | 237 | 577 | 783 | 5.20e-38 | 142 |
| MS.gene68501.t1 | MTR_5g027810 | 35.135 | 296 | 165 | 8 | 1 | 283 | 635 | 916 | 3.61e-36 | 137 |
| MS.gene68501.t1 | MTR_1g016210 | 39.161 | 286 | 149 | 7 | 1 | 274 | 652 | 924 | 8.85e-36 | 136 |
| MS.gene68501.t1 | MTR_3g055870 | 43.038 | 237 | 104 | 4 | 1 | 237 | 642 | 847 | 2.01e-35 | 135 |
| MS.gene68501.t1 | MTR_3g012240 | 36.678 | 289 | 155 | 7 | 1 | 273 | 693 | 969 | 2.59e-35 | 135 |
| MS.gene68501.t1 | MTR_5g027900 | 34.797 | 296 | 166 | 8 | 1 | 283 | 632 | 913 | 2.65e-35 | 134 |
| MS.gene68501.t1 | MTR_3g012310 | 34.737 | 285 | 158 | 7 | 1 | 269 | 647 | 919 | 3.71e-35 | 134 |
| MS.gene68501.t1 | MTR_5g027860 | 35.235 | 298 | 162 | 10 | 1 | 283 | 630 | 911 | 8.61e-35 | 133 |
| MS.gene68501.t1 | MTR_3g455940 | 42.396 | 217 | 98 | 6 | 26 | 238 | 523 | 716 | 9.59e-35 | 133 |
| MS.gene68501.t1 | MTR_3g012250 | 37.153 | 288 | 156 | 8 | 1 | 273 | 652 | 929 | 1.96e-34 | 132 |
| MS.gene68501.t1 | MTR_3g012080 | 40.465 | 215 | 119 | 4 | 63 | 273 | 2 | 211 | 3.05e-34 | 124 |
| MS.gene68501.t1 | MTR_3g011300 | 38.298 | 282 | 150 | 6 | 1 | 269 | 646 | 916 | 5.54e-34 | 131 |
| MS.gene68501.t1 | MTR_3g012060 | 36.585 | 287 | 158 | 6 | 1 | 273 | 643 | 919 | 5.70e-34 | 130 |
| MS.gene68501.t1 | MTR_3g012080 | 40.566 | 212 | 117 | 4 | 66 | 273 | 2 | 208 | 1.01e-33 | 123 |
| MS.gene68501.t1 | MTR_1g016217 | 40.000 | 245 | 135 | 5 | 31 | 274 | 1 | 234 | 7.20e-33 | 121 |
| MS.gene68501.t1 | MTR_1g078170 | 39.526 | 253 | 94 | 8 | 24 | 241 | 181 | 409 | 1.06e-31 | 122 |
| MS.gene68501.t1 | MTR_3g012090 | 38.516 | 283 | 150 | 6 | 1 | 269 | 646 | 918 | 2.68e-31 | 123 |
| MS.gene68501.t1 | MTR_3g455900 | 38.397 | 237 | 81 | 4 | 1 | 237 | 527 | 698 | 1.07e-29 | 118 |
| MS.gene68501.t1 | MTR_3g055710 | 36.996 | 273 | 133 | 5 | 1 | 272 | 484 | 718 | 2.04e-29 | 117 |
| MS.gene68501.t1 | MTR_3g012050 | 36.842 | 285 | 152 | 7 | 1 | 269 | 631 | 903 | 2.73e-29 | 117 |
| MS.gene68501.t1 | MTR_3g084000 | 79.747 | 79 | 16 | 0 | 1 | 79 | 112 | 190 | 6.76e-25 | 99.8 |
| MS.gene68501.t1 | MTR_5g027910 | 31.650 | 297 | 178 | 8 | 1 | 283 | 635 | 920 | 1.21e-22 | 98.2 |
| MS.gene68501.t1 | MTR_3g013700 | 34.135 | 208 | 115 | 4 | 68 | 273 | 483 | 670 | 4.93e-22 | 96.3 |
| MS.gene68501.t1 | MTR_5g027870 | 30.068 | 296 | 181 | 7 | 1 | 283 | 633 | 915 | 3.26e-20 | 90.9 |
| MS.gene68501.t1 | MTR_1g031720 | 40.260 | 154 | 73 | 6 | 131 | 275 | 834 | 977 | 1.53e-16 | 80.1 |
| MS.gene68501.t1 | MTR_1g031720 | 34.752 | 141 | 69 | 3 | 1 | 129 | 772 | 901 | 3.62e-11 | 63.9 |
| MS.gene68501.t1 | MTR_4g077270 | 40.196 | 102 | 54 | 2 | 1 | 97 | 18 | 117 | 3.71e-14 | 68.9 |
| MS.gene68501.t1 | MTR_4g077270 | 53.846 | 65 | 29 | 1 | 209 | 272 | 82 | 146 | 9.77e-13 | 65.1 |
| MS.gene68501.t1 | MTR_3g056300 | 55.224 | 67 | 29 | 1 | 54 | 120 | 566 | 631 | 2.94e-13 | 70.1 |
| MS.gene68501.t1 | MTR_3g056300 | 35.429 | 175 | 81 | 7 | 114 | 274 | 507 | 663 | 4.94e-12 | 66.6 |
| MS.gene68501.t1 | MTR_8g065000 | 50.667 | 75 | 36 | 1 | 181 | 254 | 50 | 124 | 2.27e-12 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68501.t1 | AT3G07040 | 27.632 | 304 | 186 | 6 | 1 | 277 | 619 | 915 | 1.46e-16 | 80.1 |
Find 54 sgRNAs with CRISPR-Local
Find 64 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCCAGCTTAACAAGATTT+TGG | 0.150003 | 3.4:+53438970 | None:intergenic |
| CTTCAACATCTTAAACTCTT+TGG | 0.228882 | 3.4:-53439029 | MS.gene68501:CDS |
| TCCAATTTGTCTTCATAATC+AGG | 0.250466 | 3.4:+53438864 | None:intergenic |
| GTGAAGATGAAAATGATAAT+AGG | 0.258808 | 3.4:-53439244 | MS.gene68501:CDS |
| GTTAACAGAACTTAGGGAAT+TGG | 0.278022 | 3.4:-53439192 | MS.gene68501:CDS |
| TCCTGATTATGAAGACAAAT+TGG | 0.283692 | 3.4:-53438865 | MS.gene68501:CDS |
| CCAATGCACCTTCGTCAATA+AGG | 0.311208 | 3.4:+53438763 | None:intergenic |
| TTAACAGAACTTAGGGAATT+GGG | 0.367166 | 3.4:-53439191 | MS.gene68501:CDS |
| ATTCAATTGAAGGATGGTAT+TGG | 0.385282 | 3.4:-53439314 | MS.gene68501:CDS |
| TCTGTCTTTGATTCAATTGA+AGG | 0.400024 | 3.4:-53439324 | MS.gene68501:CDS |
| AATCAGGAACACCAGAGATA+TGG | 0.406742 | 3.4:+53438880 | None:intergenic |
| CTAAGCTTGCAAATCTCCTT+CGG | 0.409201 | 3.4:+53439374 | None:intergenic |
| TTGTTGTCCTTCCATATCTC+TGG | 0.410312 | 3.4:-53438891 | MS.gene68501:CDS |
| ATATGGAAGGACAACAAGTT+TGG | 0.414189 | 3.4:+53438897 | None:intergenic |
| TGAAGATGAAAATGATAATA+GGG | 0.415450 | 3.4:-53439243 | MS.gene68501:CDS |
| ACAACAAGTTTGGCATACTT+TGG | 0.419201 | 3.4:+53438907 | None:intergenic |
| TCTGTCTTACTGATATGAAT+AGG | 0.425753 | 3.4:-53438656 | MS.gene68501:CDS |
| TAGGAAAGTTAACAGAACTT+AGG | 0.426191 | 3.4:-53439199 | MS.gene68501:CDS |
| ACTCCAAAATCTTGTTAAGC+TGG | 0.431746 | 3.4:-53438973 | MS.gene68501:CDS |
| GCTGGATTTGCCACGTTTGA+AGG | 0.441865 | 3.4:-53438955 | MS.gene68501:CDS |
| AGAACTTAGGGAATTGGGCT+TGG | 0.449536 | 3.4:-53439186 | MS.gene68501:CDS |
| AGGAAAGTTAACAGAACTTA+GGG | 0.463588 | 3.4:-53439198 | MS.gene68501:CDS |
| AGTCGGTAGCGACATCAGTT+GGG | 0.466067 | 3.4:+53438707 | None:intergenic |
| GTACCCTACTTAGAGTTTGT+AGG | 0.476979 | 3.4:+53439279 | None:intergenic |
| CATCCCTACAAACTCTAAGT+AGG | 0.481950 | 3.4:-53439283 | MS.gene68501:CDS |
| CCTTATTGACGAAGGTGCAT+TGG | 0.489182 | 3.4:-53438763 | MS.gene68501:CDS |
| AGTTTAAGATGTTGAAGCCT+AGG | 0.498945 | 3.4:+53439035 | None:intergenic |
| TGGATGGTTTATGAATTTGA+AGG | 0.502146 | 3.4:-53438823 | MS.gene68501:CDS |
| TACCCTACTTAGAGTTTGTA+GGG | 0.503950 | 3.4:+53439280 | None:intergenic |
| TTGAAGGAACTATATCTTCG+TGG | 0.522055 | 3.4:-53438807 | MS.gene68501:CDS |
| CAATTGAAGGATGGTATTGG+AGG | 0.527204 | 3.4:-53439311 | MS.gene68501:CDS |
| CAACTGATGTCGCTACCGAC+TGG | 0.539427 | 3.4:-53438705 | MS.gene68501:CDS |
| AAGAGCATTGATCCTGATGA+AGG | 0.540904 | 3.4:-53438624 | MS.gene68501:CDS |
| TACAACAATTGATAGAGCGC+GGG | 0.541902 | 3.4:-53438553 | MS.gene68501:CDS |
| TCTTTGATTCAATTGAAGGA+TGG | 0.543909 | 3.4:-53439320 | MS.gene68501:CDS |
| GTAGAGCTAATCATAGAGCT+AGG | 0.547838 | 3.4:-53439218 | MS.gene68501:CDS |
| CAGTCGGTAGCGACATCAGT+TGG | 0.549937 | 3.4:+53438706 | None:intergenic |
| ATCCCTACAAACTCTAAGTA+GGG | 0.555016 | 3.4:-53439282 | MS.gene68501:CDS |
| TAAGATGTTGAAGCCTAGGT+GGG | 0.559939 | 3.4:+53439039 | None:intergenic |
| AGTAGGGTACGCTTAGATGA+TGG | 0.568506 | 3.4:-53439266 | MS.gene68501:CDS |
| AGATGTTGAAGCCTAGGTGG+GGG | 0.592456 | 3.4:+53439041 | None:intergenic |
| GTCGGTAGCGACATCAGTTG+GGG | 0.602615 | 3.4:+53438708 | None:intergenic |
| AGCTACATCCTTATTGACGA+AGG | 0.611748 | 3.4:-53438771 | MS.gene68501:CDS |
| TGAGAATCGTAATATGCCGA+AGG | 0.612702 | 3.4:-53439390 | None:intergenic |
| ATTATGAAGACAAATTGGAA+AGG | 0.618244 | 3.4:-53438860 | MS.gene68501:CDS |
| TTAAGATGTTGAAGCCTAGG+TGG | 0.630986 | 3.4:+53439038 | None:intergenic |
| TTACAACAATTGATAGAGCG+CGG | 0.639449 | 3.4:-53438554 | MS.gene68501:CDS |
| ATTTAAATAAGTTTCCTGAG+TGG | 0.648135 | 3.4:-53439004 | MS.gene68501:CDS |
| TTGTTGCATCTTATTGACTG+AGG | 0.656003 | 3.4:+53439127 | None:intergenic |
| AAGATGTTGAAGCCTAGGTG+GGG | 0.656502 | 3.4:+53439040 | None:intergenic |
| TCGTTCACTTCCTTCAAACG+TGG | 0.664319 | 3.4:+53438945 | None:intergenic |
| ACAACAATTGATAGAGCGCG+GGG | 0.666822 | 3.4:-53438552 | MS.gene68501:CDS |
| AGGAACACCAGAGATATGGA+AGG | 0.690354 | 3.4:+53438884 | None:intergenic |
| TGTAAGTGTTGAATGCCAGT+CGG | 0.694041 | 3.4:+53438690 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAAGATGAAAATGATAATA+GGG | - | chr3.4:53438676-53438695 | MS.gene68501:CDS | 20.0% |
| !!! | GTAAAAACTATTTCTATAGA+GGG | + | chr3.4:53439349-53439368 | None:intergenic | 20.0% |
| !!! | TGTAAAAACTATTTCTATAG+AGG | + | chr3.4:53439350-53439369 | None:intergenic | 20.0% |
| ! | ATTATGAAGACAAATTGGAA+AGG | - | chr3.4:53439059-53439078 | MS.gene68501:CDS | 25.0% |
| ! | ATTTAAATAAGTTTCCTGAG+TGG | - | chr3.4:53438915-53438934 | MS.gene68501:CDS | 25.0% |
| ! | GTGAAGATGAAAATGATAAT+AGG | - | chr3.4:53438675-53438694 | MS.gene68501:CDS | 25.0% |
| !! | ATTAGACATTTTCATTGATC+TGG | - | chr3.4:53438844-53438863 | MS.gene68501:CDS | 25.0% |
| !! | CTAGAGAAACTACATATTTT+TGG | - | chr3.4:53438815-53438834 | MS.gene68501:CDS | 25.0% |
| AGGAAAGTTAACAGAACTTA+GGG | - | chr3.4:53438721-53438740 | MS.gene68501:CDS | 30.0% | |
| ATTCAATTGAAGGATGGTAT+TGG | - | chr3.4:53438605-53438624 | MS.gene68501:CDS | 30.0% | |
| CTTCAACATCTTAAACTCTT+TGG | - | chr3.4:53438890-53438909 | MS.gene68501:CDS | 30.0% | |
| TAGGAAAGTTAACAGAACTT+AGG | - | chr3.4:53438720-53438739 | MS.gene68501:CDS | 30.0% | |
| TCCAATTTGTCTTCATAATC+AGG | + | chr3.4:53439058-53439077 | None:intergenic | 30.0% | |
| TCCTGATTATGAAGACAAAT+TGG | - | chr3.4:53439054-53439073 | MS.gene68501:CDS | 30.0% | |
| TCTGTCTTACTGATATGAAT+AGG | - | chr3.4:53439263-53439282 | MS.gene68501:CDS | 30.0% | |
| TCTGTCTTTGATTCAATTGA+AGG | - | chr3.4:53438595-53438614 | MS.gene68501:CDS | 30.0% | |
| TCTTTGATTCAATTGAAGGA+TGG | - | chr3.4:53438599-53438618 | MS.gene68501:CDS | 30.0% | |
| TGGATGGTTTATGAATTTGA+AGG | - | chr3.4:53439096-53439115 | MS.gene68501:CDS | 30.0% | |
| TTAACAGAACTTAGGGAATT+GGG | - | chr3.4:53438728-53438747 | MS.gene68501:CDS | 30.0% | |
| ! | AATCCAGCTTAACAAGATTT+TGG | + | chr3.4:53438952-53438971 | None:intergenic | 30.0% |
| !! | GAAAGGTTACATTTTGAAGA+TGG | - | chr3.4:53439076-53439095 | MS.gene68501:CDS | 30.0% |
| !!! | AGAAAGCTACGTCATTTTTT+AGG | - | chr3.4:53438566-53438585 | MS.gene68501:CDS | 30.0% |
| ACAACAAGTTTGGCATACTT+TGG | + | chr3.4:53439015-53439034 | None:intergenic | 35.0% | |
| ACTCCAAAATCTTGTTAAGC+TGG | - | chr3.4:53438946-53438965 | MS.gene68501:CDS | 35.0% | |
| ATATGGAAGGACAACAAGTT+TGG | + | chr3.4:53439025-53439044 | None:intergenic | 35.0% | |
| ATCCCTACAAACTCTAAGTA+GGG | - | chr3.4:53438637-53438656 | MS.gene68501:CDS | 35.0% | |
| GTTAACAGAACTTAGGGAAT+TGG | - | chr3.4:53438727-53438746 | MS.gene68501:CDS | 35.0% | |
| TACCCTACTTAGAGTTTGTA+GGG | + | chr3.4:53438642-53438661 | None:intergenic | 35.0% | |
| TTACAACAATTGATAGAGCG+CGG | - | chr3.4:53439365-53439384 | MS.gene68501:CDS | 35.0% | |
| TTGAAGGAACTATATCTTCG+TGG | - | chr3.4:53439112-53439131 | MS.gene68501:CDS | 35.0% | |
| ! | AAATGCTTTTCTCCTTCATC+AGG | + | chr3.4:53439310-53439329 | None:intergenic | 35.0% |
| ! | AGTTTAAGATGTTGAAGCCT+AGG | + | chr3.4:53438887-53438906 | None:intergenic | 35.0% |
| ! | CTCTGAAAAAGCTCACTTTA+TGG | - | chr3.4:53439182-53439201 | MS.gene68501:CDS | 35.0% |
| ! | TTGTTGCATCTTATTGACTG+AGG | + | chr3.4:53438795-53438814 | None:intergenic | 35.0% |
| !! | GGTTACATTTTGAAGATGGA+TGG | - | chr3.4:53439080-53439099 | MS.gene68501:CDS | 35.0% |
| AATCAGGAACACCAGAGATA+TGG | + | chr3.4:53439042-53439061 | None:intergenic | 40.0% | |
| AGCTACATCCTTATTGACGA+AGG | - | chr3.4:53439148-53439167 | MS.gene68501:CDS | 40.0% | |
| CATCCCTACAAACTCTAAGT+AGG | - | chr3.4:53438636-53438655 | MS.gene68501:CDS | 40.0% | |
| CTAAGCTTGCAAATCTCCTT+CGG | + | chr3.4:53438548-53438567 | None:intergenic | 40.0% | |
| GTACCCTACTTAGAGTTTGT+AGG | + | chr3.4:53438643-53438662 | None:intergenic | 40.0% | |
| GTAGAGCTAATCATAGAGCT+AGG | - | chr3.4:53438701-53438720 | MS.gene68501:CDS | 40.0% | |
| TAAGATGTTGAAGCCTAGGT+GGG | + | chr3.4:53438883-53438902 | None:intergenic | 40.0% | |
| TACAACAATTGATAGAGCGC+GGG | - | chr3.4:53439366-53439385 | MS.gene68501:CDS | 40.0% | |
| TTAAGATGTTGAAGCCTAGG+TGG | + | chr3.4:53438884-53438903 | None:intergenic | 40.0% | |
| TTGTTGTCCTTCCATATCTC+TGG | - | chr3.4:53439028-53439047 | MS.gene68501:CDS | 40.0% | |
| ! | CAATTGAAGGATGGTATTGG+AGG | - | chr3.4:53438608-53438627 | MS.gene68501:CDS | 40.0% |
| !! | AAGAGCATTGATCCTGATGA+AGG | - | chr3.4:53439295-53439314 | MS.gene68501:CDS | 40.0% |
| !! | TGTAAGTGTTGAATGCCAGT+CGG | + | chr3.4:53439232-53439251 | None:intergenic | 40.0% |
| !!! | TGGAGTTTTGAAATCCACTC+AGG | + | chr3.4:53438932-53438951 | None:intergenic | 40.0% |
| AAGATGTTGAAGCCTAGGTG+GGG | + | chr3.4:53438882-53438901 | None:intergenic | 45.0% | |
| ACAACAATTGATAGAGCGCG+GGG | - | chr3.4:53439367-53439386 | MS.gene68501:CDS | 45.0% | |
| AGAACTTAGGGAATTGGGCT+TGG | - | chr3.4:53438733-53438752 | MS.gene68501:CDS | 45.0% | |
| AGGAACACCAGAGATATGGA+AGG | + | chr3.4:53439038-53439057 | None:intergenic | 45.0% | |
| AGTAGGGTACGCTTAGATGA+TGG | - | chr3.4:53438653-53438672 | MS.gene68501:CDS | 45.0% | |
| ATTTGAATTCACCCCCACCT+AGG | - | chr3.4:53438867-53438886 | MS.gene68501:CDS | 45.0% | |
| CCAATGCACCTTCGTCAATA+AGG | + | chr3.4:53439159-53439178 | None:intergenic | 45.0% | |
| TCGTTCACTTCCTTCAAACG+TGG | + | chr3.4:53438977-53438996 | None:intergenic | 45.0% | |
| ! | CCTTATTGACGAAGGTGCAT+TGG | - | chr3.4:53439156-53439175 | MS.gene68501:CDS | 45.0% |
| AGATGTTGAAGCCTAGGTGG+GGG | + | chr3.4:53438881-53438900 | None:intergenic | 50.0% | |
| AGTCGGTAGCGACATCAGTT+GGG | + | chr3.4:53439215-53439234 | None:intergenic | 50.0% | |
| GCTGGATTTGCCACGTTTGA+AGG | - | chr3.4:53438964-53438983 | MS.gene68501:CDS | 50.0% | |
| CAACTGATGTCGCTACCGAC+TGG | - | chr3.4:53439214-53439233 | MS.gene68501:CDS | 55.0% | |
| CAGTCGGTAGCGACATCAGT+TGG | + | chr3.4:53439216-53439235 | None:intergenic | 55.0% | |
| GTCGGTAGCGACATCAGTTG+GGG | + | chr3.4:53439214-53439233 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 53438542 | 53439399 | 53438542 | ID=MS.gene68501 |
| chr3.4 | mRNA | 53438542 | 53439399 | 53438542 | ID=MS.gene68501.t1;Parent=MS.gene68501 |
| chr3.4 | exon | 53438542 | 53439399 | 53438542 | ID=MS.gene68501.t1.exon1;Parent=MS.gene68501.t1 |
| chr3.4 | CDS | 53438542 | 53439399 | 53438542 | ID=cds.MS.gene68501.t1;Parent=MS.gene68501.t1 |
| Gene Sequence |
| Protein sequence |
