AlfalfaGEDB | MS.gene68577

M. sativa cultivar XinJiangDaYe / MS.gene68577

KEGG: -
GO: GO:0000166 GO:0003674 GO:0005488 GO:0005515 GO:0007165 GO:0008150 GO:0009987 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043531 GO:0050789 GO:0050794 GO:0065007 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF00931.25 PF01582.23

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68577.t1	AET01737.2	71.6	1006	246	6	3	1005	5	973	0.00E+00	1354.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68577.t1	Q40392	37.4	681	398	12	1	671	1	663	1.6e-120	435.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68577.t1	G7L6T3	71.6	1006	246	6	3	1005	5	973	0.0e+00	1354.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049825	MS.gene68577	0.804541	2.06E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene68577.t1	MTR_8g012200	67.248	1090	329	6	6	1076	11	1091	1461
MS.gene68577.t1	MTR_8g020430	72.483	1003	236	6	6	1005	8	973	1448
MS.gene68577.t1	MTR_8g073730	64.808	1094	357	7	1	1076	1	1084	1417
MS.gene68577.t1	MTR_8g011850	68.713	1026	313	6	4	1026	29	1049	1398
MS.gene68577.t1	MTR_8g011950	63.628	1075	345	7	7	1074	9	1044	1387
MS.gene68577.t1	MTR_2g437560	64.325	1082	323	11	6	1081	9	1033	1353
MS.gene68577.t1	MTR_3g022930	65.048	1050	340	9	10	1046	19	1054	1334
MS.gene68577.t1	MTR_5g047480	63.919	1031	360	4	3	1031	4	1024	1330
MS.gene68577.t1	MTR_8g012190	61.665	1093	378	8	1	1074	1	1071	1326
MS.gene68577.t1	MTR_7g025250	62.741	1087	381	8	11	1076	10	1093	1320

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68577.t1	AT5G36930	44.254	757	401	11	11	761	17	758	0.0	598
MS.gene68577.t1	AT5G36930	44.254	757	401	11	11	761	14	755	0.0	598
MS.gene68577.t1	AT5G36930	44.254	757	401	11	11	761	14	755	0.0	598
MS.gene68577.t1	AT5G36930	44.254	757	401	11	11	761	14	755	0.0	598
MS.gene68577.t1	AT5G17680	37.885	747	430	12	12	747	19	742	5.30e-151	484
MS.gene68577.t1	AT5G17680	37.751	747	430	13	12	747	19	741	1.80e-148	477
MS.gene68577.t1	AT1G27170	34.739	806	461	14	2	754	4	797	8.30e-143	464
MS.gene68577.t1	AT1G27170	33.962	795	459	13	12	754	17	797	2.26e-139	455
MS.gene68577.t1	AT5G44510	35.247	749	453	11	10	741	39	772	6.91e-136	440
MS.gene68577.t1	AT5G44510	35.247	749	453	11	10	741	39	772	1.26e-135	440

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Find 210 sgRNAs with CRISPR-Local

Find 0 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAATGTACTTTCGTCA+AGG	0.621943	3.4:-54960374	MS.gene68577:CDS
AAAATCTCCACATTGTCACC+AGG	0.659460	3.4:+54954067	None:intergenic
AAAGATATACAGAATCTGGT+TGG	0.609289	3.4:-54960535	MS.gene68577:CDS
AAATTGAGAATAAGCTATGA+TGG	0.498635	3.4:-54958300	MS.gene68577:CDS
AACACGTCGTGTATCCGGGG+AGG	0.703279	3.4:+54960734	None:intergenic
AACAGAAACTGTAGAGGGAT+TGG	0.473441	3.4:-54957698	MS.gene68577:CDS
AAGAACTGAGATGGATTCAC+TGG	0.528073	3.4:-54957552	MS.gene68577:CDS
AAGACTTCCATGAACTCTCA+AGG	0.564459	3.4:-54958458	MS.gene68577:CDS
AAGCTGCTAATTTGTCTGGT+TGG	0.449985	3.4:-54960298	MS.gene68577:CDS
AAGGATAATTGCTACCCGGA+AGG	0.619461	3.4:+54954335	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	54953790	54960774	54953790	ID=MS.gene68577
chr3.4	mRNA	54953790	54960774	54953790	ID=MS.gene68577.t1;Parent=MS.gene68577
chr3.4	exon	54960281	54960774	54960281	ID=MS.gene68577.t1.exon1;Parent=MS.gene68577.t1
chr3.4	CDS	54960281	54960774	54960281	ID=cds.MS.gene68577.t1;Parent=MS.gene68577.t1
chr3.4	exon	54958002	54959103	54958002	ID=MS.gene68577.t1.exon2;Parent=MS.gene68577.t1
chr3.4	CDS	54958002	54959103	54958002	ID=cds.MS.gene68577.t1;Parent=MS.gene68577.t1
chr3.4	exon	54957447	54957722	54957447	ID=MS.gene68577.t1.exon3;Parent=MS.gene68577.t1
chr3.4	CDS	54957447	54957722	54957447	ID=cds.MS.gene68577.t1;Parent=MS.gene68577.t1
chr3.4	exon	54956577	54957353	54956577	ID=MS.gene68577.t1.exon4;Parent=MS.gene68577.t1
chr3.4	CDS	54956577	54957353	54956577	ID=cds.MS.gene68577.t1;Parent=MS.gene68577.t1
chr3.4	exon	54953790	54954389	54953790	ID=MS.gene68577.t1.exon5;Parent=MS.gene68577.t1
chr3.4	CDS	54953790	54954389	54953790	ID=cds.MS.gene68577.t1;Parent=MS.gene68577.t1

Gene Sequence

>MS.gene68577

ATGGGTTCCTCTTTCAATCCTCCCCGGATACACGACGTGTTCATCAATTTTAGAGGAAAAGATACTCGTACCAACTTTGTTTCTCATCTAGACGCTGCACTCACAAATGCAGGAATCAACACTTACATCGATACTCAGATTCACAAAGGAACCGAAGTAGGACCAGAACTATTATCAGCAATAGAAAAATCTCATATCTCTATCCTTATTTTCTCCAAAAGATATACAGAATCTGGTTGGTGTCTTCAAGAGCTAGATAAAGTCATGGAATGTTACAGAACTCAGGGTCAGCTTGTTATCCCTGTGTTTTACGACGTCGACCCGTCGGTTGTTCGCCACCAGAAAGGTGATTTTGGGAAAAAACTGAGAGCTACTGCCAAAAGAATGTACTTTCGTCAAGGAGGAGAGGAGAGGGTGGAATATGTGTTGTCAAATTGGAGGAATGCACTTACTCAAGCTGCTAATTTGTCTGGTTGGGATGTCCTCAATTGCAGGTATAGCTAAATCAACACTTTCTTGCTTCTTTTTTATTTTCCACAATATTTTTTTTTGCCTGGGTTATTATTACTAGTGGGAATACAGATACTGCACTAACGCTTATGAATGATGCTTTTTATGAAATTGATTGGCTAAATTACACTTCTCTTAAGTTTGAGGTTTGTAACAAATTGGTTTTTTAAGTTATTTTGGTCACACAGTCCTTTAAGTTTGTAAACATTTTCGATTTAGTCTTTCTGTCACATCATTGTTTTTGTAATGTTTGGCTAACAGAAGGACTAAATTGAAAACGTTTATAAACTAAAGGACTTATGTGTGATCAAAATAACTCAAAGGATCAATCTGTTAGTAACTCAAATGATCAATCTGTTACAAACCTCAAACTTAAAGGACCCTTGTGTAATTTAGCCAAATTGATTAAAAGTATAAATGTTTGTGACTTTCATATTATAACAAAGCCAAAAATCATGTTTTTTTTTTTTATTTTTTTTTTTACCAATTTCACCAACAATATAGCAAGCTAATATAAATTCTTATCTTTCTTACTAACATCACAATATAACATTATTATAGGAAAAATTGTTAATGGCTATAATTGGAATAATGAAAAAACCAGGCAAAATCCCTTATTCCCTTTATATATAGTAATGGTATAGATATGTCCATAAGTTGTTTCAACTGATTTTCATATGTTCTCTAGGATGATAGTGCATGAAAAACAACTTATAGCTTATATGATAACAGTTTGGCTTTATCTTATCATTTATTATAAAATTAACTTATACATAGTGAGTGTTTGATCTGCTAAAAAATATGGGACTGGACAACTTTTTTTGTTCCGTGGTTGGTTTAGAAACTGGTCATGGGACTGAGCAAAAGCTTTAATTTTGTCGCTCACTAAACCATGGGACAACTTTTTGTCCAGAGTACAGACTATGCAAAATACCAAAATACCCTCTTTCTTTTCGAACATAAAAATTATTATCTATATATCTTTCTCCGATATAGTTTTGTCTTGTTCTGTACTTACTGTTTTGCGATTCAAACACACCCATAAAGACTTATATGATAAGAGTCTATGCTATACGCGCTTAATTAAGTTGTTTATCCAAACAAGGTGTAGTCTATCCTAACGTGTCCTCACTCTGTGTTTTTTAATTATTACCACCCAAGGAGTGAAGGTGAACTAATGCAGCAAATTGTTGAAGATGTTTTGGCAAAACTAGACAACACATTATTGTCTATTACCGAATTTCCAGTTGGATTGGAATCCCGTGTGGGACAAGTGACTGACTTTATTGAAAATCAACCAAAGAAAGTTTGCATGATAGGGATATGGGGAATGGGAGGCTCCGGTAAAACAACCACAGCTAAAGCTATCTACAATCGAATTCATCGGAAATTTGCCGATAGAAGTTTTGTTGAAAATGTTAGAGAAGTATGTGAAAAGGAAAATAGAGGGATTATTCATTTACAACAACAACTTCTTTCAGATATACTGAACACAAAGGAGAGGATACATAGCATTGCGTTAGGAACAACAAAGATTGAGAAAAGATTTTGTGGGAAAAAGGCACTCATTGTGCTTGATGATGTGACCACATTTGAACAGTTAAAATCGTTATGTGGAAATCCTAAACTGTTTTGTCCGGGAAGTGTGTTAATTGTTACAACTAGAGATGTACGTCTGCTTAATTTATTTAAGGTTGATTATGTGTATTCAATGAAGGAAATGGACGAAAAGGAGTCCCTTGAGCTTTTCTGCTGGCATGCTTTTAGACAACCTTGCCCAATCAAAGACTTCCATGAACTCTCAAGGAATGTAGTTGCTTATTGTGGAGGATTACCTGTTGCTCTTGAAGTCCTAGGTTCTTACTTATGTGAGAGGACAAAAGAAGAATGGATAAGTGTACTCTCGAAACTAAAAAGAATTCCCCATGATCAAGTCCAAGAGAAATTGAGAATAAGCTATGATGGTTTGAAGGATGATATGGCGAAGGATTTATTTCTTGACATATGTTGTTTCTTTATCGGCAAGGAAAGAGCCTATGTTACAGAGATACTAAATGGCTGTGGACTTCATGCAAATATTGGAATAACTGTCCTTGTAGAGCGGAGTCTTGTCAAAATTGAAAAGAATAACAAGCTTGGAATGCATGATTTAATAAGAGACATGGGAAGAGAAATTGTTCGTGAAGGTTCAGCAAAAGAACCCGGGAAGCGTAGTAGATTGTGGTTTCGTGAGGATGTGCATGATATTTTGACAAAACATACTGTAAGCACATTTTCTTTATAAATTAGAAACTTTTGTTCATCCTCCAAAATCTTGTTAAGATCATAGAATCTTTGGCTCGGAGCTGATCTGCTCTTATAAATAATAACGACTGAATATTCTTGGGTCCATGTTTGAGTGTGTTACCATTATCATGACCCGTGCTATTGCATGTGAACTTGAGCTGCACCTCGTAAAGTTTAGGTATCATTTTCTAGAACAAACAAAAAAGGTTTATCCTTACTCTTCTTTGTTCTTTTTTGTTTTCCTTCACATGTGTAGGGAACAGAAACTGTAGAGGGATTGGTTTTGAAGGTGCAAAGAACCAGTAGATTTCTCTTAAGTACTGATTCTTTCAAGGAGATGAAAAAACTGAGACTTTTACAACTTGATCATGCCGTCCTCACTGGAGATTATCGGTATCTTTCCAAAGAACTGAGATGGATTCACTGGCAAGGATTTACCTTCAACTACATACCTGATGAATTTTATCAGGGAAATCTAGTTGTCATTGACGTAAAATACAGCAATATCAAACATGTGTGGAAGGAAACCAAGGTATAATAATTTCTTTTCAAACTCAAACATTCACGACAATAGTATTTGTTCCCACCTCTCTAATTTTTCTTTTGAACATATATCTTCTTGCAGTTGTTGGATAAACTAACAATTCTCAATGTTAGTCATTCTAGATACTTGAAAAACACCCCTGATTTTTCAAAATTACCAAATCTAGAAAAGCTTATTATGAAGAATTGTCCAAGTTTGTCAGAGGTACACCATTCCATTGGAGATCTCAAGAATCTACTTCTATTGAATTTGAAGGACTGTACAAGTCTTAGCAACCTCCCTATGAAGATCTATAAATTGAAATCTTTGAAAACTCTTATACTTTCTGGTTGTACAAAGATTGACAAGTTGGAAGAAGAAATGGGGCAGATGGAATCCTTGACAACACTGATTGCAAAAGATACATCTGTAAAAGAAGTCCCCTATTCAATACTAAGATTAAAAAGTATTGGATTTATATCCCTATGTGGATATGAAGGATTATCACGTGATGTTTTTCCTTCTCTCGTTAGGTCTTGGATGACACCGTCCGTGAATTCTCTACCATGTATATCCCCATTTCAGGGAAGTTCATTGTCTCTAGTTTCCTTGGATGTAACAAGTAATAATATGGGCTATCAATCACCAATGCTTAGCAACCTTTCAAAACTTAGAAGTGTTTTGGTTCAATGCCGATCACAGATTCAACTGACTCAAGAATTAAGAAATTTTTTTGATGATCTCTATGATGTCAATTTTACCAAGTTAGAAACAACATCACATGCATCACAAATCGTTGACTGCTCCTTGAGATCACTTTTGATTGGGATGGGAAGTTGTCACCTGGTCATCGACACTCTTGGCAAGAGCATATCACAGGTTCCTGAACAATTCTCTCTTTTACCGATCTTTAAGAAAACATAGAACAATTTTCCATTTGCAATTTTTTCTTTCTTGAAAGCAAAAGTTCCTAAAGATATGGATTCATTCTTGGCAAGAACATAGAAGTGAAATTATGTTTTTAAGATATAATTACATCATTTTCTTTTTCAACATTTCATCTTTGCTCTTCATCCATATGTACTTCACTTTATTTCTTTTTTTTTTTACTGTTTGTATCTATTTTGTTTGTTTTTTTCTTAATACTTTTTTCTTATATATACACATGTTCAATTGTTTTAGTATTTTAGTATATTAACTACATTCACAGTAGAACTAGGTACCAGATAATTCTTAACTATTTGAATAATGAAGCTGTCAATATATGTTGTTCCTTTTTTCTATATTAGTAGGAACCCAGAACTACAATGAGCATTCTGTGCAAACTTTTGCCAAGTGCAGCAGTCCTACCAACTAATAATACAGTGATAGTAAAGTGACTTCTTTTACCTGCCGAAAGTAAATTATCGTTCTAAGTTCTAACGAAGCCTGGATTCAAGTACCAGCAATCACAAAATAATCCCTTTTTGAACTTATGCATGAAATGATGGTTGTATTGCATCGATGGATGACTTACAACTGCTAGTGAATGTAGCAAAAGAATCAATTGTGTTGTGTAACAAGTGACTTAGAAGCCCCACATTGCTTGGAAAAGTGGAGGTTGTACATTTTATAAGTGAGAGGACACATAAACCCAATACCGATCCCCCGGGTTCCTCTTGTGACCCAACAGTGGTATCAGAGCCGTGGTTCGACACAGGTTTGATATGCTCCTTGTATCGAAAGTCATCCTGGCCAAGGATGTTCAGGCGGCATGTTCCGTTGTGTGCGGTGAAAACGGCGGTACACTAAAAATTCGAAGATAGCCAACAGTTCTTAAAATTTGGGTTTGGTTTTACAAAACCAGTTTTAATGTATACGATGTCTCCCACTTATAAACACATATCAAGCCATATCTCATCCAATGTGTCTTTTAACATCCACCCATATCTCATCCAATGTGTCTTTCAACATCCACCCTCAAGGGTGGATGTTGAAAGACACATTGGATGAGATATGGCTTGATATGTGTTTATAAGTGGGAGACATCGTATACATTAAAACTGGTTTTGTAAAACCAAACCCAAATTTTAAGAACTGTTGGCTATCTCATCCAATGCAAACACATATCAAGCCATATCTCATCCAATGTGTCTTTCAACATCCACCCTCACCTTGAGGACTAGACATCTGAAGGGTGACTAGATAGCTGATGGTCCAGCAGATCTTTGATAGACTTTAATGTCGTCTTAAAATTTGAGTTTGACCCGACTCAACCTTACAAAATCAGCTTATAAGGTGATGAATTCTGCCCACCTATTAAATATTTTCAAGACATATCTCACCAAATGTGTGACTCTCAACAACAGTTGAGATACTGGAACCCAAATCAGCTTGAGAATGCAATAGATGGATGATTAGACGACTGAGATGATCAATGCAAACAGGCCAAATGTCTAGAGATGCGCATTCAAGAAATGAAGCATATGACTTTGTGGTAGAACCAGTAGGAAAAGGATGAGCAGGAATGCTCTACAACTATAATGGAGGATGCCCCATTTTAGAGTCTTACATGACAAAACCCCTATATGAATTTGCATGATATTGGTTGCATAAACCTATATATGTAGGAATGCTCTACAATTATAATGGAGGATGCCGCATTTTAGAGTCTTAAATGACAGAATTAGAGTCTTACATGACAAAACCTTTATATGTAGGCATCATAGCGCAACGAGCATATCAATATTAGGCAAATTTTCCACTTAAACTGTTTTAATTTCTACAAAACGTGTCTAAAAATACTGATTACAAAGATTATTTAGTTTTGAGCAGCATTTCCACTTTTTATTTTTTTTATTTTTATCTAAATATCTATTTATTGGTTATTCTAATATGAAAATAAACCATATTATTGTTGATTGTACATATTTGAAATTTGCAATTTCTTTTGTTTTACAAATTTGTTGATTTTACTCTCATAAACTGTTATCACATTATCAATAGAACATTTTATGCTTAATTAAATGCATTATTATTGCACTAATAGTAATAAAATTAACTAAGCATATGCTCGTCATGATACAGGGATTGGCAATCAATGATTCTAGTGGTTTTTGCCTTCCGGGTAGCAATTATCCTTCTTGGTTAGCCTATACAGGTGAAGGAACTTCAGTACTGTTTCAAATTCCTGAGGATATTGATTGTCACATGAAGGGAATAATTTTATGCGTTGTTTATTCATCAACGTCGGAAAATGTGGCTGTTGACTGTCTTGCTAATGTCTTGATCATTAATTACACAAAATGCACATTCCAAATATACAAGGGAGACACAGTAATGTCTTTTAATGATGAAGATTGGAAGGGTTTAACATCAAATCTAGGACCTGGTGACAATGTGGAGATTTTTGTAGCATTTAGCCATGGATTGACTGTTAAGGAGACTGCTGTATATCTAATATATGGCCATTCAGTTGCTATGGAAATTGAGTCAGCAATTAACACGGAAATGAAGCTTTCGCCTGAAGTGAACTCGCAGCCATCATCCACTGTGAAAACTGAGCCATCACTTGATGTAAAAACGAAGTCATCGCGGAATCCAAATGAAAAAATATTTTCAAGACTTGCAAAGAGAATGGGAAAATGTTTATGCCTAAACCAGAATAGAGGTCTCAACAATCATTGA

Protein sequence

>MS.gene68577.t1

MGSSFNPPRIHDVFINFRGKDTRTNFVSHLDAALTNAGINTYIDTQIHKGTEVGPELLSAIEKSHISILIFSKRYTESGWCLQELDKVMECYRTQGQLVIPVFYDVDPSVVRHQKGDFGKKLRATAKRMYFRQGGEERVEYVLSNWRNALTQAANLSGWDVLNCRSEGELMQQIVEDVLAKLDNTLLSITEFPVGLESRVGQVTDFIENQPKKVCMIGIWGMGGSGKTTTAKAIYNRIHRKFADRSFVENVREVCEKENRGIIHLQQQLLSDILNTKERIHSIALGTTKIEKRFCGKKALIVLDDVTTFEQLKSLCGNPKLFCPGSVLIVTTRDVRLLNLFKVDYVYSMKEMDEKESLELFCWHAFRQPCPIKDFHELSRNVVAYCGGLPVALEVLGSYLCERTKEEWISVLSKLKRIPHDQVQEKLRISYDGLKDDMAKDLFLDICCFFIGKERAYVTEILNGCGLHANIGITVLVERSLVKIEKNNKLGMHDLIRDMGREIVREGSAKEPGKRSRLWFREDVHDILTKHTGTETVEGLVLKVQRTSRFLLSTDSFKEMKKLRLLQLDHAVLTGDYRYLSKELRWIHWQGFTFNYIPDEFYQGNLVVIDVKYSNIKHVWKETKLLDKLTILNVSHSRYLKNTPDFSKLPNLEKLIMKNCPSLSEVHHSIGDLKNLLLLNLKDCTSLSNLPMKIYKLKSLKTLILSGCTKIDKLEEEMGQMESLTTLIAKDTSVKEVPYSILRLKSIGFISLCGYEGLSRDVFPSLVRSWMTPSVNSLPCISPFQGSSLSLVSLDVTSNNMGYQSPMLSNLSKLRSVLVQCRSQIQLTQELRNFFDDLYDVNFTKLETTSHASQIVDCSLRSLLIGMGSCHLVIDTLGKSISQGLAINDSSGFCLPGSNYPSWLAYTGEGTSVLFQIPEDIDCHMKGIILCVVYSSTSENVAVDCLANVLIINYTKCTFQIYKGDTVMSFNDEDWKGLTSNLGPGDNVEIFVAFSHGLTVKETAVYLIYGHSVAMEIESAINTEMKLSPEVNSQPSSTVKTEPSLDVKTKSSRNPNEKIFSRLAKRMGKCLCLNQNRGLNNH