AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene68629

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene68629.t1 MTR_4g123970 96.584 322 10 1 1 321 1 322 0.0 648
MS.gene68629.t1 MTR_1g097390 28.421 285 143 11 23 267 67 330 5.36e-18 84.3
MS.gene68629.t1 MTR_2g005830 28.495 186 108 5 42 209 43 221 1.55e-16 79.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene68629.t1 AT3G06950 68.078 307 91 3 17 321 21 322 8.02e-153 431
MS.gene68629.t1 AT1G34150 29.482 251 132 8 45 268 94 326 1.26e-17 83.6
MS.gene68629.t1 AT1G09800 24.233 326 160 10 42 292 56 369 3.26e-14 73.2
MS.gene68629.t1 AT1G09800 24.233 326 160 10 42 292 56 369 3.26e-14 73.2

Find 74 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATATTGTTCCACATATTT+TGG 0.121197 8.1:-7494967 MS.gene68629:CDS
TATTGAGTTTATACATATTA+TGG 0.228707 8.1:+7495454 None:intergenic
ACCGTTTAATTACGACAATT+TGG 0.242990 8.1:-7495646 MS.gene68629:CDS
AAAATATGTGGAACAATATT+AGG 0.254864 8.1:+7494969 None:intergenic
ACATATTATGGTAAGCAAAA+TGG 0.289437 8.1:+7495466 None:intergenic
CACTTATAGCCATCTTGGTT+GGG 0.298483 8.1:+7496935 None:intergenic
CCGATTTGATGTGAAAGAAA+TGG 0.378687 8.1:-7495322 MS.gene68629:intron
TCCTGCTTGCACCAACCAAC+TGG 0.392400 8.1:+7495803 None:intergenic
TCCAAATTGTCGTAATTAAA+CGG 0.394286 8.1:+7495645 None:intergenic
TGATGCAGGAGTCCATGCTT+GGG 0.401400 8.1:-7495779 MS.gene68629:CDS
GTCGCATTGTTGCTTCAGAT+TGG 0.418270 8.1:-7495008 MS.gene68629:CDS
AAAATATGCTTCACTGGATC+TGG 0.422038 8.1:+7495345 None:intergenic
CCACTTATAGCCATCTTGGT+TGG 0.431380 8.1:+7496934 None:intergenic
GAAGATTGAATACCATGTTT+CGG 0.438346 8.1:+7495099 None:intergenic
ATGAATGATGCCTGCATAAC+GGG 0.440243 8.1:+7496886 None:intergenic
ATCTGGTACGCGATCATTGT+GGG 0.445378 8.1:+7495362 None:intergenic
AAGCAAAATGGCGCTGGAAC+GGG 0.448936 8.1:+7495478 None:intergenic
AGGGAAGTTGGAGATGGAAT+CGG 0.449511 8.1:+7497096 None:intergenic
GCGTGGAATTCAGCTGATGC+AGG 0.451298 8.1:+7495561 None:intergenic
CCATTTCTTTCACATCAAAT+CGG 0.454616 8.1:+7495322 None:intergenic
GGCGCCACTTATAGCCATCT+TGG 0.459785 8.1:+7496930 None:intergenic
CTGATGCAGGAGTCCATGCT+TGG 0.463793 8.1:-7495780 MS.gene68629:CDS
AATCGGAAAATATGCTTCAC+TGG 0.470992 8.1:+7495339 None:intergenic
TCTACGGCGCATTGTACAGT+AGG 0.472692 8.1:+7495868 None:intergenic
AGGAGTCCATGCTTGGGGTC+AGG 0.479875 8.1:-7495773 MS.gene68629:intron
TCCAGTTGGTTGGTGCAAGC+AGG 0.481534 8.1:-7495804 MS.gene68629:CDS
TACGATGGAACCCGTTATGC+AGG 0.483247 8.1:-7496896 MS.gene68629:intron
CATACAGAAAGAAGGGAAGT+TGG 0.491033 8.1:+7497084 None:intergenic
CAGCTAGAAGTTGAAGGCTC+GGG 0.495832 8.1:-7495140 MS.gene68629:CDS
GAATAGGCAGTGAAATGAGT+TGG 0.498812 8.1:-7497152 None:intergenic
CATTCATACATACAGAAAGA+AGG 0.507840 8.1:+7497076 None:intergenic
AATAGGCAGTGAAATGAGTT+GGG 0.520368 8.1:-7497151 None:intergenic
TATGGTAAGCAAAATGGCGC+TGG 0.522963 8.1:+7495472 None:intergenic
TTAGAGCAACAAAGCTTCAA+AGG 0.523117 8.1:-7495834 MS.gene68629:CDS
GCAGCTAGAAGTTGAAGGCT+CGG 0.527801 8.1:-7495141 MS.gene68629:CDS
GGGTTCCATCGTAAGACAAA+AGG 0.528252 8.1:+7496906 None:intergenic
AGTCACTTGTTGCCTCCACC+AGG 0.529491 8.1:-7494858 MS.gene68629:CDS
GGTGCAAGCAGGACTGATGC+AGG 0.533920 8.1:-7495793 MS.gene68629:CDS
GAAAGAAGGGAAGTTGGAGA+TGG 0.534216 8.1:+7497090 None:intergenic
AGCAACAAAGCTTCAAAGGA+AGG 0.536541 8.1:-7495830 MS.gene68629:CDS
TAAGCAAAATGGCGCTGGAA+CGG 0.543419 8.1:+7495477 None:intergenic
TTTGCAGGGCAACCTGGTGG+AGG 0.546040 8.1:+7494846 None:intergenic
CTACGGCGCATTGTACAGTA+GGG 0.547422 8.1:+7495869 None:intergenic
CATCAGCTGAATTCCACGCT+CGG 0.550432 8.1:-7495557 MS.gene68629:CDS
ATTCATACATACAGAAAGAA+GGG 0.552512 8.1:+7497077 None:intergenic
CCAACCAAGATGGCTATAAG+TGG 0.555642 8.1:-7496934 MS.gene68629:CDS
TTTGGAGAGTCGTGATCGCA+AGG 0.562237 8.1:-7494949 MS.gene68629:CDS
TCACGACTCTCCAAAATATG+TGG 0.564125 8.1:+7494957 None:intergenic
ATCTGACCTGACCCCAAGCA+TGG 0.568094 8.1:+7495767 None:intergenic
TATGTGGAACAATATTAGGA+GGG 0.569490 8.1:+7494973 None:intergenic
ATATGTGGAACAATATTAGG+AGG 0.574988 8.1:+7494972 None:intergenic
TTCCATCGTAAGACAAAAGG+AGG 0.577863 8.1:+7496909 None:intergenic
AGAGTTCACGCTGCTTTGAA+CGG 0.578649 8.1:-7495621 MS.gene68629:CDS
CGTGGAATTCAGCTGATGCA+GGG 0.588035 8.1:+7495562 None:intergenic
TCTCTAACTCGTATATCAGA+AGG 0.591774 8.1:+7495591 None:intergenic
GATCTGGTACGCGATCATTG+TGG 0.593882 8.1:+7495361 None:intergenic
AGGAAGGATCTCCAGTTGGT+TGG 0.596611 8.1:-7495814 MS.gene68629:CDS
GCGCTGGAACGGGTCCATGA+TGG 0.598181 8.1:+7495488 None:intergenic
TGCTATTATCTGCCACCACA+TGG 0.601083 8.1:-7494912 MS.gene68629:CDS
GAATTCTTCAAGTGATGTTG+TGG 0.605338 8.1:-7496966 MS.gene68629:CDS
GAAGTGAAGCCCAACCAAGA+TGG 0.606632 8.1:-7496944 MS.gene68629:CDS
AATGAATGATGCCTGCATAA+CGG 0.610145 8.1:+7496885 None:intergenic
ATTGTTGCTTCAGATTGGAA+AGG 0.610327 8.1:-7495003 MS.gene68629:CDS
GATTTACAGTGATACCATCA+TGG 0.611998 8.1:-7495502 MS.gene68629:CDS
TCATACCATAAGAAAATGCA+AGG 0.613094 8.1:-7494808 MS.gene68629:CDS
TCAAAGGAAGGATCTCCAGT+TGG 0.617658 8.1:-7495818 MS.gene68629:CDS
GATGCAGGAGTCCATGCTTG+GGG 0.645475 8.1:-7495778 MS.gene68629:CDS
TACGGCGCATTGTACAGTAG+GGG 0.655013 8.1:+7495870 None:intergenic
ATGTGGAACAATATTAGGAG+GGG 0.656496 8.1:+7494974 None:intergenic
AGCAGCAGCAACAACATCAG+TGG 0.661577 8.1:-7497124 MS.gene68629:CDS
GTATAGACAAGTCCGAAACA+TGG 0.664436 8.1:-7495111 MS.gene68629:intron
ACGGCGCATTGTACAGTAGG+GGG 0.692690 8.1:+7495871 None:intergenic
GAAACAAGACAAAGACCATG+TGG 0.703286 8.1:+7494897 None:intergenic
ACAAGACAAAGACCATGTGG+TGG 0.708267 8.1:+7494900 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACTAAAATAAGTATAGTAT+AGG - chr8.1:7495140-7495159 MS.gene68629:CDS 15.0%
!! CCAAATATAAAAATCTAATA+TGG + chr8.1:7495288-7495307 None:intergenic 15.0%
!! CCTAATATAAAAATCTAATA+CGG + chr8.1:7495456-7495475 None:intergenic 15.0%
!! TATTGAGTTTATACATATTA+TGG + chr8.1:7496484-7496503 None:intergenic 15.0%
!!! CAACAATAACTTTTTTAATT+TGG + chr8.1:7496866-7496885 None:intergenic 15.0%
!!! CCATATTAGATTTTTATATT+TGG - chr8.1:7495285-7495304 MS.gene68629:intron 15.0%
!! AAAATATGTGGAACAATATT+AGG + chr8.1:7496969-7496988 None:intergenic 20.0%
!! TTTCAAAAAATAAACCAAGA+AGG + chr8.1:7496719-7496738 None:intergenic 20.0%
!!! CCGTATTAGATTTTTATATT+AGG - chr8.1:7495453-7495472 MS.gene68629:CDS 20.0%
!!! TAATATTGTTCCACATATTT+TGG - chr8.1:7496968-7496987 MS.gene68629:CDS 20.0%
!!! TCTAATTAAAGCTTTTTCTA+CGG + chr8.1:7496086-7496105 None:intergenic 20.0%
!!! TGTTTTTATTCATTAAATGC+TGG + chr8.1:7495965-7495984 None:intergenic 20.0%
! AAGTTTCGGATAAAAAAGAT+AGG + chr8.1:7495549-7495568 None:intergenic 25.0%
! ACATATTATGGTAAGCAAAA+TGG + chr8.1:7496472-7496491 None:intergenic 25.0%
! ATGCAATATGCAAGTAATAT+TGG + chr8.1:7495582-7495601 None:intergenic 25.0%
! ATTCATACATACAGAAAGAA+GGG + chr8.1:7494861-7494880 None:intergenic 25.0%
! TAAAAATACCAAATCCAAGT+TGG - chr8.1:7495821-7495840 MS.gene68629:CDS 25.0%
! TCCAAATTGTCGTAATTAAA+CGG + chr8.1:7496293-7496312 None:intergenic 25.0%
! TGCAATATGCAAGTAATATT+GGG + chr8.1:7495581-7495600 None:intergenic 25.0%
! TTATAACTTATTGTGACTGT+AGG - chr8.1:7496250-7496269 MS.gene68629:intron 25.0%
!! AAGCTGCAAGATATTTTATT+GGG - chr8.1:7496519-7496538 MS.gene68629:intron 25.0%
!! ATATATCTGTTTGCATTTTC+AGG - chr8.1:7496905-7496924 MS.gene68629:CDS 25.0%
!!! ACTTGGATTTGGTATTTTTA+AGG + chr8.1:7495821-7495840 None:intergenic 25.0%
!!! ATCTTTTTTATCCGAAACTT+AGG - chr8.1:7495549-7495568 MS.gene68629:CDS 25.0%
!!! TTTTTCTCCATTATTTTGAC+TGG - chr8.1:7496008-7496027 MS.gene68629:intron 25.0%
AAAATCTAATACGGTATCTG+AGG + chr8.1:7495447-7495466 None:intergenic 30.0%
ACCGTTTAATTACGACAATT+TGG - chr8.1:7496289-7496308 MS.gene68629:intron 30.0%
AGAAGAGAAAGAGAAAAAAG+AGG + chr8.1:7494904-7494923 None:intergenic 30.0%
ATAGTATAGGCTCTTAATGT+TGG - chr8.1:7495153-7495172 MS.gene68629:CDS 30.0%
ATATGTGGAACAATATTAGG+AGG + chr8.1:7496966-7496985 None:intergenic 30.0%
CACTCTTTATGAACTCTTAT+TGG - chr8.1:7495351-7495370 MS.gene68629:CDS 30.0%
CATTCATACATACAGAAAGA+AGG + chr8.1:7494862-7494881 None:intergenic 30.0%
CCATTTCTTTCACATCAAAT+CGG + chr8.1:7496616-7496635 None:intergenic 30.0%
GAAAACTACACCTTTCTATA+TGG + chr8.1:7495943-7495962 None:intergenic 30.0%
GAAGAGAAAGAGAAAAAAGA+GGG + chr8.1:7494903-7494922 None:intergenic 30.0%
GAAGATTGAATACCATGTTT+CGG + chr8.1:7496839-7496858 None:intergenic 30.0%
GCATTTCTCTCAAAGTAAAT+AGG + chr8.1:7495680-7495699 None:intergenic 30.0%
GGTGCATGTATATAAATAGT+GGG - chr8.1:7495406-7495425 MS.gene68629:CDS 30.0%
TAATAATGTTCACAGCAGTA+CGG + chr8.1:7496666-7496685 None:intergenic 30.0%
TATGTGGAACAATATTAGGA+GGG + chr8.1:7496965-7496984 None:intergenic 30.0%
TCATACCATAAGAAAATGCA+AGG - chr8.1:7497127-7497146 MS.gene68629:CDS 30.0%
TGGTGCATGTATATAAATAG+TGG - chr8.1:7495405-7495424 MS.gene68629:CDS 30.0%
TTACCATGTTTATACCTTCT+TGG - chr8.1:7496702-7496721 MS.gene68629:intron 30.0%
TTGGGAAAAAACCTAAGTTT+CGG + chr8.1:7495563-7495582 None:intergenic 30.0%
! AAACCAAGAAGGTATAAACA+TGG + chr8.1:7496708-7496727 None:intergenic 30.0%
! GAAGCTGCAAGATATTTTAT+TGG - chr8.1:7496518-7496537 MS.gene68629:intron 30.0%
! TACAACCTTGCATTTTCTTA+TGG + chr8.1:7497135-7497154 None:intergenic 30.0%
!! AAAATGGTGTCACAAACTTA+AGG + chr8.1:7495749-7495768 None:intergenic 30.0%
!! ATTTTGAGCTTTATCCAACT+TGG + chr8.1:7495838-7495857 None:intergenic 30.0%
!! GGGATTTGGTATTCTTTTTA+TGG + chr8.1:7495904-7495923 None:intergenic 30.0%
AAAACGACTTGTAAGGTAAG+GGG - chr8.1:7495493-7495512 MS.gene68629:CDS 35.0%
AAAATATGCTTCACTGGATC+TGG + chr8.1:7496593-7496612 None:intergenic 35.0%
AATCGGAAAATATGCTTCAC+TGG + chr8.1:7496599-7496618 None:intergenic 35.0%
AATCTCACGTTCAATGCTAT+TGG - chr8.1:7495379-7495398 MS.gene68629:CDS 35.0%
AATGAATGATGCCTGCATAA+CGG + chr8.1:7495053-7495072 None:intergenic 35.0%
ACAGTCACCAGTCAAAATAA+TGG + chr8.1:7496018-7496037 None:intergenic 35.0%
ATCTCACGTTCAATGCTATT+GGG - chr8.1:7495380-7495399 MS.gene68629:CDS 35.0%
ATGTGGAACAATATTAGGAG+GGG + chr8.1:7496964-7496983 None:intergenic 35.0%
CTTTACGAAAACGACTTGTA+AGG - chr8.1:7495486-7495505 MS.gene68629:CDS 35.0%
GAAAACGACTTGTAAGGTAA+GGG - chr8.1:7495492-7495511 MS.gene68629:CDS 35.0%
GAATTCTTCAAGTGATGTTG+TGG - chr8.1:7494969-7494988 MS.gene68629:CDS 35.0%
GACTCTTGATCCATATAGAA+AGG - chr8.1:7495930-7495949 MS.gene68629:intron 35.0%
GATTTACAGTGATACCATCA+TGG - chr8.1:7496433-7496452 MS.gene68629:intron 35.0%
TCTCAAACATTGTAACCATG+AGG - chr8.1:7495630-7495649 MS.gene68629:CDS 35.0%
TCTCTAACTCGTATATCAGA+AGG + chr8.1:7496347-7496366 None:intergenic 35.0%
TTAGAGCAACAAAGCTTCAA+AGG - chr8.1:7496101-7496120 MS.gene68629:intron 35.0%
! AGCTTTATCCAACTTGGATT+TGG + chr8.1:7495832-7495851 None:intergenic 35.0%
! ATTGTTGCTTCAGATTGGAA+AGG - chr8.1:7496932-7496951 MS.gene68629:CDS 35.0%
! CCGATTTGATGTGAAAGAAA+TGG - chr8.1:7496613-7496632 MS.gene68629:intron 35.0%
! TGAATGAAGTTTTCAGCTTG+AGG - chr8.1:7495868-7495887 MS.gene68629:CDS 35.0%
!! TTTGTGACACCATTTTTGTG+AGG - chr8.1:7495753-7495772 MS.gene68629:intron 35.0%
AAAACCGTCTTGTGACTTGA+GGG - chr8.1:7495324-7495343 MS.gene68629:CDS 40.0%
AAGCTGAAATTGCGCACAAA+AGG + chr8.1:7496203-7496222 None:intergenic 40.0%
AGCAACAAAGCTTCAAAGGA+AGG - chr8.1:7496105-7496124 MS.gene68629:intron 40.0%
ATGAATGATGCCTGCATAAC+GGG + chr8.1:7495052-7495071 None:intergenic 40.0%
ATGGATCAAGAGTCAAAGCA+GGG + chr8.1:7495924-7495943 None:intergenic 40.0%
CACGTCAATATCAATGTGCA+GGG - chr8.1:7496762-7496781 MS.gene68629:intron 40.0%
CACTTATAGCCATCTTGGTT+GGG + chr8.1:7495003-7495022 None:intergenic 40.0%
CAGACAATGCCTCACAAAAA+TGG + chr8.1:7495765-7495784 None:intergenic 40.0%
CATACAGAAAGAAGGGAAGT+TGG + chr8.1:7494854-7494873 None:intergenic 40.0%
CGAAAACGACTTGTAAGGTA+AGG - chr8.1:7495491-7495510 MS.gene68629:CDS 40.0%
GAAACAAGACAAAGACCATG+TGG + chr8.1:7497041-7497060 None:intergenic 40.0%
GTATAGACAAGTCCGAAACA+TGG - chr8.1:7496824-7496843 MS.gene68629:intron 40.0%
GTTGGAGATACTCACTTGTA+AGG - chr8.1:7495171-7495190 MS.gene68629:intron 40.0%
TATGGATCAAGAGTCAAAGC+AGG + chr8.1:7495925-7495944 None:intergenic 40.0%
TCACGACTCTCCAAAATATG+TGG + chr8.1:7496981-7497000 None:intergenic 40.0%
TCACGTCAATATCAATGTGC+AGG - chr8.1:7496761-7496780 MS.gene68629:intron 40.0%
TCTTATCGCTTCAACACCAT+TGG - chr8.1:7495211-7495230 MS.gene68629:intron 40.0%
TGATACGAATCAGAACCTCA+TGG + chr8.1:7495648-7495667 None:intergenic 40.0%
TGGTATTCGAGCTTACCAAT+CGG + chr8.1:7495268-7495287 None:intergenic 40.0%
TTCCATCGTAAGACAAAAGG+AGG + chr8.1:7495029-7495048 None:intergenic 40.0%
! AGCTTTCAAGTGGCAAACAT+TGG - chr8.1:7496218-7496237 MS.gene68629:intron 40.0%
! CTTTTGCAGCTAGAAGTTGA+AGG - chr8.1:7496789-7496808 MS.gene68629:intron 40.0%
! TTTGACTGGTGACTGTTTTC+AGG - chr8.1:7496022-7496041 MS.gene68629:intron 40.0%
!! ACTTGGTGCGTGTGTATAAA+CGG - chr8.1:7495234-7495253 MS.gene68629:intron 40.0%
!! AGTCACAAGACGGTTTTGTA+AGG + chr8.1:7495321-7495340 None:intergenic 40.0%
!! TGGTGTCACAAACTTAAGGT+TGG + chr8.1:7495745-7495764 None:intergenic 40.0%
AAACCGTCTTGTGACTTGAG+GGG - chr8.1:7495325-7495344 MS.gene68629:CDS 45.0%
ACAAGACAAAGACCATGTGG+TGG + chr8.1:7497038-7497057 None:intergenic 45.0%
ACGTTCAATGCTATTGGGCT+TGG - chr8.1:7495385-7495404 MS.gene68629:CDS 45.0%
AGGGAAGTTGGAGATGGAAT+CGG + chr8.1:7494842-7494861 None:intergenic 45.0%
ATCTGGTACGCGATCATTGT+GGG + chr8.1:7496576-7496595 None:intergenic 45.0%
CAAAACCGTCTTGTGACTTG+AGG - chr8.1:7495323-7495342 MS.gene68629:CDS 45.0%
CAAGAGTCAAAGCAGGGATT+TGG + chr8.1:7495918-7495937 None:intergenic 45.0%
CCAACCAAGATGGCTATAAG+TGG - chr8.1:7495001-7495020 MS.gene68629:CDS 45.0%
CCACTTATAGCCATCTTGGT+TGG + chr8.1:7495004-7495023 None:intergenic 45.0%
GAAAGAAGGGAAGTTGGAGA+TGG + chr8.1:7494848-7494867 None:intergenic 45.0%
GCGCAATTTCAGCTTTCAAG+TGG - chr8.1:7496208-7496227 MS.gene68629:intron 45.0%
GGGTTCCATCGTAAGACAAA+AGG + chr8.1:7495032-7495051 None:intergenic 45.0%
GGTATTCGAGCTTACCAATC+GGG + chr8.1:7495267-7495286 None:intergenic 45.0%
TATGGTAAGCAAAATGGCGC+TGG + chr8.1:7496466-7496485 None:intergenic 45.0%
TCAAAGGAAGGATCTCCAGT+TGG - chr8.1:7496117-7496136 MS.gene68629:intron 45.0%
TCACTTGTAAGGTGAGAGAG+AGG - chr8.1:7495182-7495201 MS.gene68629:intron 45.0%
TGCTATTATCTGCCACCACA+TGG - chr8.1:7497023-7497042 MS.gene68629:intron 45.0%
! AGAGTTCACGCTGCTTTGAA+CGG - chr8.1:7496314-7496333 MS.gene68629:intron 45.0%
! GCATGCCAGAACTTTTTGCA+GGG + chr8.1:7497106-7497125 None:intergenic 45.0%
! GTCGCATTGTTGCTTCAGAT+TGG - chr8.1:7496927-7496946 MS.gene68629:CDS 45.0%
! TAAGCAAAATGGCGCTGGAA+CGG + chr8.1:7496461-7496480 None:intergenic 45.0%
! TGCATGCCAGAACTTTTTGC+AGG + chr8.1:7497107-7497126 None:intergenic 45.0%
! TTTTTGCAGAAAACCGAGCG+TGG + chr8.1:7496394-7496413 None:intergenic 45.0%
!! CGGTTTTGTAAGGACGAGTT+TGG + chr8.1:7495311-7495330 None:intergenic 45.0%
!! GTTTTCAGGCTGGCAATATC+AGG - chr8.1:7496036-7496055 MS.gene68629:intron 45.0%
ACACCCCTCAAGTCACAAGA+CGG + chr8.1:7495331-7495350 None:intergenic 50.0%
AGCAGCAGCAACAACATCAG+TGG - chr8.1:7494811-7494830 MS.gene68629:CDS 50.0%
AGGAAGGATCTCCAGTTGGT+TGG - chr8.1:7496121-7496140 MS.gene68629:intron 50.0%
CAGCTAGAAGTTGAAGGCTC+GGG - chr8.1:7496795-7496814 MS.gene68629:intron 50.0%
CATCAGCTGAATTCCACGCT+CGG - chr8.1:7496378-7496397 MS.gene68629:intron 50.0%
CGCTTCAACACCATTGGACT+TGG - chr8.1:7495217-7495236 MS.gene68629:intron 50.0%
CGTGGAATTCAGCTGATGCA+GGG + chr8.1:7496376-7496395 None:intergenic 50.0%
CTACGGCGCATTGTACAGTA+GGG + chr8.1:7496069-7496088 None:intergenic 50.0%
GAAGTGAAGCCCAACCAAGA+TGG - chr8.1:7494991-7495010 MS.gene68629:CDS 50.0%
GATCTGGTACGCGATCATTG+TGG + chr8.1:7496577-7496596 None:intergenic 50.0%
GCAGCTAGAAGTTGAAGGCT+CGG - chr8.1:7496794-7496813 MS.gene68629:intron 50.0%
GCGTGTGTATAAACGGTTGG+TGG - chr8.1:7495241-7495260 MS.gene68629:intron 50.0%
GGTGCGTGTGTATAAACGGT+TGG - chr8.1:7495238-7495257 MS.gene68629:intron 50.0%
GGTTGCCCTGCAAAAAGTTC+TGG - chr8.1:7497098-7497117 MS.gene68629:CDS 50.0%
TACACACGCACCAAGTCCAA+TGG + chr8.1:7495230-7495249 None:intergenic 50.0%
TACGATGGAACCCGTTATGC+AGG - chr8.1:7495039-7495058 MS.gene68629:intron 50.0%
TACGGCGCATTGTACAGTAG+GGG + chr8.1:7496068-7496087 None:intergenic 50.0%
TCTACGGCGCATTGTACAGT+AGG + chr8.1:7496070-7496089 None:intergenic 50.0%
TGATGCAGGAGTCCATGCTT+GGG - chr8.1:7496156-7496175 MS.gene68629:intron 50.0%
TTTGGAGAGTCGTGATCGCA+AGG - chr8.1:7496986-7497005 MS.gene68629:intron 50.0%
! AAGCAAAATGGCGCTGGAAC+GGG + chr8.1:7496460-7496479 None:intergenic 50.0%
! CGCCTCCTTTTGTCTTACGA+TGG - chr8.1:7495024-7495043 MS.gene68629:intron 50.0%
! CGGTATCTGAGGCTATCGAT+CGG + chr8.1:7495436-7495455 None:intergenic 50.0%
! GAACTTTTTGCAGGGCAACC+TGG + chr8.1:7497098-7497117 None:intergenic 50.0%
! GGTATCTGAGGCTATCGATC+GGG + chr8.1:7495435-7495454 None:intergenic 50.0%
!! ACTGGTGACTGTTTTCAGGC+TGG - chr8.1:7496026-7496045 MS.gene68629:intron 50.0%
ACGGCGCATTGTACAGTAGG+GGG + chr8.1:7496067-7496086 None:intergenic 55.0%
ATCTGACCTGACCCCAAGCA+TGG + chr8.1:7496171-7496190 None:intergenic 55.0%
CTGATGCAGGAGTCCATGCT+TGG - chr8.1:7496155-7496174 MS.gene68629:intron 55.0%
GATGCAGGAGTCCATGCTTG+GGG - chr8.1:7496157-7496176 MS.gene68629:intron 55.0%
GCGTGGAATTCAGCTGATGC+AGG + chr8.1:7496377-7496396 None:intergenic 55.0%
GGCGCCACTTATAGCCATCT+TGG + chr8.1:7495008-7495027 None:intergenic 55.0%
TCCTGCTTGCACCAACCAAC+TGG + chr8.1:7496135-7496154 None:intergenic 55.0%
! AGTCACTTGTTGCCTCCACC+AGG - chr8.1:7497077-7497096 MS.gene68629:intron 55.0%
! CTTTTTGCAGGGCAACCTGG+TGG + chr8.1:7497095-7497114 None:intergenic 55.0%
! TCCAGTTGGTTGGTGCAAGC+AGG - chr8.1:7496131-7496150 MS.gene68629:intron 55.0%
!! TAAACGGTTGGTGGCCCGAT+TGG - chr8.1:7495250-7495269 MS.gene68629:intron 55.0%
AGGAGTCCATGCTTGGGGTC+AGG - chr8.1:7496162-7496181 MS.gene68629:intron 60.0%
GGTGCAAGCAGGACTGATGC+AGG - chr8.1:7496142-7496161 MS.gene68629:intron 60.0%
TTTGCAGGGCAACCTGGTGG+AGG + chr8.1:7497092-7497111 None:intergenic 60.0%
GCGCTGGAACGGGTCCATGA+TGG + chr8.1:7496450-7496469 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 7494797 7497160 7494797 ID=MS.gene68629
chr8.1 mRNA 7494797 7497160 7494797 ID=MS.gene68629.t1;Parent=MS.gene68629
chr8.1 exon 7497089 7497160 7497089 ID=MS.gene68629.t1.exon1;Parent=MS.gene68629.t1
chr8.1 CDS 7497089 7497160 7497089 ID=cds.MS.gene68629.t1;Parent=MS.gene68629.t1
chr8.1 exon 7496897 7496990 7496897 ID=MS.gene68629.t1.exon2;Parent=MS.gene68629.t1
chr8.1 CDS 7496897 7496990 7496897 ID=cds.MS.gene68629.t1;Parent=MS.gene68629.t1
chr8.1 exon 7495774 7495913 7495774 ID=MS.gene68629.t1.exon3;Parent=MS.gene68629.t1
chr8.1 CDS 7495774 7495913 7495774 ID=cds.MS.gene68629.t1;Parent=MS.gene68629.t1
chr8.1 exon 7495323 7495685 7495323 ID=MS.gene68629.t1.exon4;Parent=MS.gene68629.t1
chr8.1 CDS 7495323 7495685 7495323 ID=cds.MS.gene68629.t1;Parent=MS.gene68629.t1
chr8.1 exon 7495112 7495174 7495112 ID=MS.gene68629.t1.exon5;Parent=MS.gene68629.t1
chr8.1 CDS 7495112 7495174 7495112 ID=cds.MS.gene68629.t1;Parent=MS.gene68629.t1
chr8.1 exon 7494797 7495030 7494797 ID=MS.gene68629.t1.exon6;Parent=MS.gene68629.t1
chr8.1 CDS 7494797 7495030 7494797 ID=cds.MS.gene68629.t1;Parent=MS.gene68629.t1
Gene Sequence

>MS.gene68629

ATGAGTTGGGCATTAGCAGCAGCAACAACATCAGTGGTTACTCCGATTCCATCTCCAACTTCCCTTCTTTCTGTATGTATGAATGAATGAATGAATGAATGAACCCTCTTTTTTCTCTTTCTCTTCTTCACTCTTTTTTCATCATAAGTATAACAGTTTGCTTTTTGTAGTTGAATTCTTCAAGTGATGTTGTGGAAGTGAAGCCCAACCAAGATGGCTATAAGTGGCGCCTCCTTTTGTCTTACGATGGAACCCGTTATGCAGGCATCATTCATTCATTCATTATCTGTTATGTTATTAATTATGTGCTTGTACTTTTCTAACACTCATTTCTTATAAAATCAACTAAAATAAGTATAGTATAGGCTCTTAATGTTGGAGATACTCACTTGTAAGGTGAGAGAGAGGTCTCACTCTTATCGCTTCAACACCATTGGACTTGGTGCGTGTGTATAAACGGTTGGTGGCCCGATTGGTAAGCTCGAATACCATATTAGATTTTTATATTTGGCCAAACTCGTCCTTACAAAACCGTCTTGTGACTTGAGGGGTGTCACTCTTTATGAACTCTTATTGGTATGCAATCTCACGTTCAATGCTATTGGGCTTGGTGCATGTATATAAATAGTGGGTAGCCCGATCGATAGCCTCAGATACCGTATTAGATTTTTATATTAGGATTAACTCGTCTTTACGAAAACGACTTGTAAGGTAAGGGGTGTCACTCTTTATAAACTCTTATCAAGAGTCCTATCTTTTTTATCCGAAACTTAGGTTTTTTCCCAATATTACTTGCATATTGCATATCTTCAACTTTCTGTTGCTTTCAATAATCTCAAACATTGTAACCATGAGGTTCTGATTCGTATCATTTGTTAGACCTATTTACTTTGAGAGAAATGCTTTTCTTTTTATGTTTTTTTTGCTCTCACTCTTGTTCTAAGTCCAACCTTAAGTTTGTGACACCATTTTTGTGAGGCATTGTCTGTTTTGAGTCTTATGTAAGCTCTCACGAGTTTGTCCTTAAAAATACCAAATCCAAGTTGGATAAAGCTCAAAATCTTAAACTATTGAATGAAGTTTTCAGCTTGAGGTCATAGTGTGCCATAAAAAGAATACCAAATCCCTGCTTTGACTCTTGATCCATATAGAAAGGTGTAGTTTTCCAGCATTTAATGAATAAAAACATAAGTAAATAGTTGAATTCTTTCTTTTTCTCCATTATTTTGACTGGTGACTGTTTTCAGGCTGGCAATATCAGGAGTCTCCCCCTACTGTACAATGCGCCGTAGAAAAAGCTTTAATTAGAGCAACAAAGCTTCAAAGGAAGGATCTCCAGTTGGTTGGTGCAAGCAGGACTGATGCAGGAGTCCATGCTTGGGGTCAGGTCAGATCTTGTAATTCCTTTTGTGCGCAATTTCAGCTTTCAAGTGGCAAACATTGGATTGAAATTTTATAACTTATTGTGACTGTAGGTTGCACATTTTCATACACCGTTTAATTACGACAATTTGGATAGAGTTCACGCTGCTTTGAACGGTCTTCTTCCTTCTGATATACGAGTTAGAGAGATCAGCCCTGCATCAGCTGAATTCCACGCTCGGTTTTCTGCAAAAAGTAAGATTTATCATTACAAGATTTACAGTGATACCATCATGGACCCGTTCCAGCGCCATTTTGCTTACCATAATATGTATAAACTCAATAGTGCTGCTATGAGAGAAGCTGCAAGATATTTTATTGGGAAGCATGATTTCACTGCTTTTGAAAATGCATCCCACAATGATCGCGTACCAGATCCAGTGAAGCATATTTTCCGATTTGATGTGAAAGAAATGGTACTTAGAGTTCATATTTAAAGTTTTTCCGTACTGCTGTGAACATTATTAGTATTTTGCATTAAATTTACCATGTTTATACCTTCTTGGTTTATTTTTTGAAAACTAAGAATACTCTAATGCTGATCACGTCAATATCAATGTGCAGGGAGCTCTTTTGCAGCTAGAAGTTGAAGGCTCGGGTTTCTTGTATAGACAAGTCCGAAACATGGTATTCAATCTTCTGTGCCAAATTAAAAAAGTTATTGTTGTATAGTTGATAGCAATGACATATATCTGTTTGCATTTTCAGGTCGCATTGTTGCTTCAGATTGGAAAGGAAGCAACCCCTCCTAATATTGTTCCACATATTTTGGAGAGTCGTGATCGCAAGGAGCTTGCAAAATACTGCTATTATCTGCCACCACATGGTCTTTGTCTTGTTTCTATTAACTATAATGAAAGTCACTTGTTGCCTCCACCAGGTTGCCCTGCAAAAAGTTCTGGCATGCATCATACCATAAGAAAATGCAAGGTTGTATTCTAA
Protein sequence

>MS.gene68629.t1

MSWALAAATTSVVTPIPSPTSLLSLNSSSDVVEVKPNQDGYKWRLLLSYDGTRYAGWQYQESPPTVQCAVEKALIRATKLQRKDLQLVGASRTDAGVHAWGQVAHFHTPFNYDNLDRVHAALNGLLPSDIRVREISPASAEFHARFSAKSKIYHYKIYSDTIMDPFQRHFAYHNMYKLNSAAMREAARYFIGKHDFTAFENASHNDRVPDPVKHIFRFDVKEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEATPPNIVPHILESRDRKELAKYCYYLPPHGLCLVSINYNESHLLPPPGCPAKSSGMHHTIRKCKVVF