AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene057658


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene057658.t1 MTR_4g074590 94.737 114 6 0 123 236 98 211 1.72e-75 229
MS.gene057658.t1 MTR_4g074600 91.818 110 8 1 1 110 1 109 7.62e-68 213
MS.gene057658.t1 MTR_1g036390 58.621 87 35 1 24 110 4 89 4.61e-31 117
MS.gene057658.t1 MTR_1g036390 57.627 59 24 1 52 110 1 58 4.00e-17 79.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene057658.t1 AT3G19800 60.784 102 37 3 131 231 84 183 4.09e-33 120
MS.gene057658.t1 AT3G19800 60.784 102 37 3 131 231 87 186 4.45e-33 120
MS.gene057658.t1 AT3G18620 52.273 88 41 1 27 114 4 90 7.63e-25 100

Find 50 sgRNAs with CRISPR-Local

Find 0 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAATACCTGTCGGCAATA+TGG 0.256325 4.4:-34921849 None:intergenic
GTTTGTTGCATCTACGTCTT+TGG 0.259690 4.4:-34920966 None:intergenic
AAGACGCCGCTACCTGAAAT+TGG 0.281826 4.4:+34922515 MS.gene057658:CDS
CTGTTTGCTCTGATCTGTTA+TGG 0.298875 4.4:-34917384 None:intergenic
ACACGTTGTCTCATAATTCT+TGG 0.315868 4.4:-34917294 None:intergenic
TAAGGGTCATCTCCAATTTC+AGG 0.323199 4.4:-34922527 None:intergenic
AATTTAACGTATGGGTTCTC+AGG 0.344390 4.4:+34922471 MS.gene057658:CDS
GCATGCTAGCTTTGGTTTAT+CGG 0.347729 4.4:+34921773 MS.gene057658:intron
GAAATACCTGTCGGCAATAT+GGG 0.350769 4.4:-34921848 None:intergenic
ATCAAGATCAACTTCGTATC+CGG 0.376867 4.4:-34923122 None:intergenic
GAATTATGAGACAACGTGTT+GGG 0.390262 4.4:+34917298 MS.gene057658:CDS
CACGGAGTAGTCTCCATCTA+AGG 0.398846 4.4:-34917424 None:intergenic
GTGACAAGAATGGCCTTAGA+TGG 0.420024 4.4:+34917411 MS.gene057658:CDS
TAATGCCAGCATGCTAGCTT+TGG 0.428452 4.4:+34921765 MS.gene057658:intron
CATTTACTGCAGAGTTTAGC+CGG 0.442228 4.4:-34923165 None:intergenic
TTGACACAAAATTTAACGTA+TGG 0.454071 4.4:+34922462 MS.gene057658:CDS
TGTTCAAATGTGGCTGGTGT+GGG 0.454444 4.4:+34917360 MS.gene057658:CDS
ATCAACTTCGTATCCGGGTC+TGG 0.462073 4.4:-34923116 None:intergenic
CTTCACACCTTCTTCAACCC+AGG 0.472013 4.4:+34916121 MS.gene057658:CDS
GTGTTCAAATGTGGCTGGTG+TGG 0.479049 4.4:+34917359 MS.gene057658:CDS
GAGACAACGTGTTGGGGTTG+TGG 0.487020 4.4:+34917305 MS.gene057658:CDS
CATCAATCTCTGCGTCCAAA+AGG 0.501589 4.4:+34921425 MS.gene057658:CDS
TGACACAAAATTTAACGTAT+GGG 0.521710 4.4:+34922463 MS.gene057658:CDS
GCTATGATTCCTACTGTGGT+TGG 0.522870 4.4:-34916083 None:intergenic
TCAAGATCAACTTCGTATCC+GGG 0.528329 4.4:-34923121 None:intergenic
TACTGCAGAGTTTAGCCGGA+TGG 0.530577 4.4:-34923161 None:intergenic
TTCTTCCCCATATTGCCGAC+AGG 0.531443 4.4:+34921842 MS.gene057658:CDS
CTATTGTAAAAGATGCCATC+CGG 0.538715 4.4:+34923146 MS.gene057658:CDS
AAACAGAAATGTGACAAGAA+TGG 0.550080 4.4:+34917401 MS.gene057658:CDS
ATTTAACGTATGGGTTCTCA+GGG 0.551584 4.4:+34922472 MS.gene057658:CDS
TGGATGCATAAATGCCACTA+AGG 0.552198 4.4:-34920946 None:intergenic
CACCAGTGTTCAAATGTGGC+TGG 0.556534 4.4:+34917354 MS.gene057658:CDS
GAAGGTGTGAAGATGTTTGA+TGG 0.558981 4.4:-34916110 None:intergenic
TTGAACACTGGTGCACGAGA+TGG 0.560326 4.4:-34917344 None:intergenic
AAACAAACCTGGGTTGAAGA+AGG 0.574023 4.4:-34916128 None:intergenic
TCATCTCCAATTTCAGGTAG+CGG 0.574462 4.4:-34922521 None:intergenic
GTGCACGAGATGGAAGCAAA+AGG 0.578998 4.4:-34917334 None:intergenic
AAATACCTGTCGGCAATATG+GGG 0.600836 4.4:-34921847 None:intergenic
AAAGACGTAGATGCAACAAA+CGG 0.602644 4.4:+34920968 MS.gene057658:CDS
GTTCAAATGTGGCTGGTGTG+GGG 0.603704 4.4:+34917361 MS.gene057658:CDS
AATTATGAGACAACGTGTTG+GGG 0.604745 4.4:+34917299 MS.gene057658:CDS
GAATTGACTCCAACCACAGT+AGG 0.604808 4.4:+34916074 MS.gene057658:CDS
GCTACTTGTGCATTCTTACG+TGG 0.605254 4.4:-34921402 None:intergenic
TGTTGCTATGATTCCTACTG+TGG 0.609913 4.4:-34916087 None:intergenic
TTAGGAGCGATATGTAACTA+CGG 0.613751 4.4:+34917268 MS.gene057658:intron
CAGGTGATATATACCAGACC+CGG 0.614257 4.4:+34923103 MS.gene057658:intron
CACCAGCCACATTTGAACAC+TGG 0.621903 4.4:-34917356 None:intergenic
TAGTAACAATGCATCGATCA+CGG 0.622175 4.4:-34917442 None:intergenic
AGAATTATGAGACAACGTGT+TGG 0.646287 4.4:+34917297 MS.gene057658:CDS
CGTGCACCAGTGTTCAAATG+TGG 0.672990 4.4:+34917350 MS.gene057658:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content


Chromosome Type Strat End Strand Name
chr4.4 gene 34916056 34923192 34916056 ID=MS.gene057658
chr4.4 mRNA 34916056 34923192 34916056 ID=MS.gene057658.t1;Parent=MS.gene057658
chr4.4 exon 34916056 34916142 34916056 ID=MS.gene057658.t1.exon1;Parent=MS.gene057658.t1
chr4.4 CDS 34916056 34916142 34916056 ID=cds.MS.gene057658.t1;Parent=MS.gene057658.t1
chr4.4 exon 34917272 34917494 34917272 ID=MS.gene057658.t1.exon2;Parent=MS.gene057658.t1
chr4.4 CDS 34917272 34917494 34917272 ID=cds.MS.gene057658.t1;Parent=MS.gene057658.t1
chr4.4 exon 34920945 34921012 34920945 ID=MS.gene057658.t1.exon3;Parent=MS.gene057658.t1
chr4.4 CDS 34920945 34921012 34920945 ID=cds.MS.gene057658.t1;Parent=MS.gene057658.t1
chr4.4 exon 34921378 34921446 34921378 ID=MS.gene057658.t1.exon4;Parent=MS.gene057658.t1
chr4.4 CDS 34921378 34921446 34921378 ID=cds.MS.gene057658.t1;Parent=MS.gene057658.t1
chr4.4 exon 34921774 34921863 34921774 ID=MS.gene057658.t1.exon5;Parent=MS.gene057658.t1
chr4.4 CDS 34921774 34921863 34921774 ID=cds.MS.gene057658.t1;Parent=MS.gene057658.t1
chr4.4 exon 34922461 34922550 34922461 ID=MS.gene057658.t1.exon6;Parent=MS.gene057658.t1
chr4.4 CDS 34922461 34922550 34922461 ID=cds.MS.gene057658.t1;Parent=MS.gene057658.t1
chr4.4 exon 34923106 34923192 34923106 ID=MS.gene057658.t1.exon7;Parent=MS.gene057658.t1
chr4.4 CDS 34923106 34923192 34923106 ID=cds.MS.gene057658.t1;Parent=MS.gene057658.t1
Gene Sequence

>MS.gene057658

ATGCATTCGAGCAACGAAGAATTGACTCCAACCACAGTAGGAATCATAGCAACACCATCAAACATCTTCACACCTTCTTCAACCCAGGTTTGTTTGTTTCGAATTACGATTCTGTTATATATAATATCCATTCAATTCCGTTACTTGGCTCAGAGCTTTTCAATTCAACACAATATCAATTCTAAATTTTGCATGATCACAAAAGGCTTCAATTAGGCATGTTTGGATTGACTAAATCATGGTGGCACCATCATTTTTATTGGGGCATTGTATTCGGGTTGAAGATTTTCCCTTATTCTATATTTGTTTGAGAATATGAAAAAAAATATGGTTGTGGAGAACAAAGTTTTAATTTTGATTTTCACCCCTTGCTTCATTGTAGTGGACGGGGATGTTTTTTTTTGTCTTGCTTAAATGATATGCTAAAGTTGCTGTTTTTGCCCTTAGCTCAAGAATTTAGTTTAGTCCATTTCGCTCTCAACATTGTACTAGAGACTATAGTTAACTACTAATTTAGAGTTTAGAGAAAGGGGTTTTAGCTAGTGAGCATTTGACCAAACAAGGTAATCCGTGTTTATTCAACAAGCTCTTACCGAATGAGAGCTTATAGCTTAAGCATTAATCGGGGTTTAGCCGGTGTTTTGATGTACATGTTGAAGTTATTTGTGTTTTCAGTATATCAATAGAATCTGAGGGTTGAAGGAGGCTAAGCTCTGCATATACTGTTTCTATGAGCTGCCTCAGGGAGATTATTAAATTAGTTGAAAACAACTTAGGATTGTAAGCTCTTTCAAATATTATGAGACAAGCCCAAATAAGCTCTTCCAAATATCCCTTTCAAGTATCGTATGTTAGATAATGTCTGACGCGCTTAGTTTTCTTTGAATATATTCGTGTTGTAAATTATAATTGATCAAAACATAATTGATCAAAACATTAAAAACTCTTGGGATGTGGGTCTTCTTGTAAATGTTGAGTTGTGGCCCTTAAGGGGTTTGTGATGTATTCGTAAAGTTAAGAGAATGTAACAAAGCAAAACAGAATAAAGGTATACTACCTCGTAGTACTTAGCTGTTATGGTTTGTTAATTTGTTTGGTCATATATGGTAAATAAGTTACTTCATGAACTGTATAAGTTACTTCATGAACTGTGTTTCTTGCACTATTTTGCACAGTTTGAAAATTTGTATTAGTTGTTGATGTAATTCGCATTTAGGAGCGATATGTAACTACGGCTACCAAGAATTATGAGACAACGTGTTGGGGTTGTGGACTGCGCCTTTTGCTTCCATCTCGTGCACCAGTGTTCAAATGTGGCTGGTGTGGGGCCATAACAGATCAGAGCAAACAGAAATGTGACAAGAATGGCCTTAGATGGAGACTACTCCGTGATCGATGCATTGTTACTATTGTCATCATGTTTATGCTCTTTATAATATGTAAGCCACTGTTGTTCCTAGTTCGTGCTGCTTTTTGGTTTTTATTTGTTGTCTTCCTGTTTCACCGGACTTCTTTTTTTCCCTCCTTTTCAATTTATGCAGTCAAAGGGTTGTCTAGAGTCACAATTTTCGTTAGTACATTCAAATTGAAACTTGATTTTTAAAAGGTTTATAAATGAAGAGATTAGAGACGTCTTCTGCATTATTTTACACAGTTCTTATATATTTAATTTAATTTAATTTTGTGCAGTTGGCGGGGTGTGGGCAATTTATCCTGTCGTCTATTCTATCAGTCCTTCTGGGATTTTCCACTCTATCATTACGGTAACCTTGGCTGTAGCTACCATTTCCTCTTTCAGCCTTTCAGCTTTTCGTTGTGCTGGCACACCACCAAACTTAGTGTGGGGAAGCTACCCCACTATAGGGAATGGTGACCTTGAAAATTATACCTTCTGTTACTACTGCTCAAGACCCAAGTCACCCAGAACTCATCACTGCCGCTCTTGTGGAAAATGTATACTGAACATGGATCACCACTGCCCATTTGTAAGCTTCCATCATCTTTTAAACATAAATTTCAATTTTCATGGCGTGATACTGTGATCACCACTCTAATTTCGTGTGTGTAAATTATAAATGTTTTAAGTATACAGTGGATGACTATAATAGGTAATGTTGTGTTCTGCTGGTTTTTGGCTGTACTCTTCTGTATTGAATTTGAATAGTTCGAAGGAAGTGAGATATGAAACCCTCTTCTGTTGTCTCTTTGCTTTCTCCTAATTCCAGTTTCTATTTGTTTTCCTCATTCACCAATAATAAAATATACATCCGGAAAACAATATCCTATCTAAATAATGTTTTGAAATTTTATGTGAAAAAAAGAGCTAATGCAAGAAGGATTTACGATTTTCTTTTAATTTTGTGTCTCCTTAGAGAATTTCATTACTCATCTCCCAGGTGATAAGTGTCTCTTGGCTCTTGCTGGTTCATGTTGGAGACAGTGTTATCAATGATGGATTATGGTGGCTGTTAGGACCTGGAGAAACAGTAAAGAGATTGATGCAGTAAAATAGAGAAAATGGATTGAAATACGAGACTGACTATTATTGAACTTTTGGGGAATTTACAGAAGGATCTAACAATCACAACTGGCACAGAGCTAAGCTCCTATGGAGGGATAAATGCTCTCCATTCAACAGATTACAATCTAATTCTTTTGGATGCCTCCTAGATTCTCTCCTTCCACTGTTTAGCCACTTGCCTCAGCCTAACAGAATTAGTCCCTCATAATTGTCTCACCTACTTCCAGTTCATGCTTCCTCGTGTGCCTTTGGATACTCCCTTACCCTTCCTCGAGTAGACTTGCCACACCGTGGGTCCATGTGATAGAGTTTGGGCCGTTATCATGAGAGACATATAGACAATGTTGTGTTAACATGAGTATGGCATGAAAATTACACATTTTTTTTATTATTATTAGCTATTATTCAAAGTTTTATTCATTGCCCATCAACTGTGTTAAATTAAGCTATTGGCAGTTTTGTTCATAGTCCTTAAATTAAACTATCGATAGTCAAGTCATTACAGTGTACAACAAATCTTCAAAATTTCTCTATCTTAACCCTAATCTGGTTATTGTTTGGTAATCCTTTGGCAGATCGGGAACTGTGTTGGCGCAGCTAATCACCGCAGCTTCATTGCATTCCTAATTTCAGGATTGTTCAGCACCATCTATATTTCTATAGTGTCTGTACACGCTGGCTTTCATATGTGGCCGCCATTGACATATTCCATTGGACGCATACATGGGACCACTATTGAAAATCTAGCCTGGAGAATTGTGAAAGAAACTATTTTTGCCTTTATGAGATCTGTGCAACTTCTATCCCCTAGAGGGTTTATTCTCATTTATCTATTTGTTGCAAGTTTTTCAATGATGATAGGGTTGAGTGTTCTTCTATGGCAGCAGCTACGTTTTATTTATGAGGGAGAAACTTACTTGAGTCACCTAAGTTCGCAAGGGCATAATGGAGATGGAATGAAGGATTGCCAAAATCTTGTTAGATTTTTTGGTTTTTCATTTTCGGTAAAACGATATTTGCCCAAGTTCCTAGTTAGTAGTTACTCAGAAGAGACACATAAAGGGAAATACACATGATCTGTGATCAAAGAGTTTCTTATCTTTTTTCTCTATTTCACAATTTTGTATCAAAGTAATTTCTTGAGTATATCTGAAAGATATATCATTAGTCATGTCAATTATTAAATTAGAGAATTGTTCCTTTATATGCACCAAGTCAGATTGAGTTCGGAACATGTATTTTACAGGTCACACGAAGTGAGGTTTTACGTGCATTCCAATAGGAGGATACATGTTTATTTCATCTAAAAGAAATTGATTGAAGAATGCACATTTATAAATCTGAAGCTTAGTTTCAATAATTTTCTCACTACGTGCAGAGCAGCAGAAGGGCAGTTATAATATAACTTTATAAAATTGGTTGTTAACATTCTAGTTATGGATTCCCTCAAAAAAAAAAAACATTCTAGTTATGGATAAAATTGAGTTTGTTTGAATTTTTAAAATTGGTTTGATTTTGACTATTTTTTTTGTTTGTTTGGAATACTATAATAGGAATGAAATTTTGTTTATTTGTTGTTTATATTTAGAAATCTAAATTTGTTTTCCTCTAAAAAAAAAAAAAGAAATCTAAATTTGATGGAATTCGAATTCATGTTTTATTTATTGTTTGAGTTGATGGTTTTGTGTTTTAATTCGTTTAAACTCCAAACATAAAAATATTTCTTAGTCAAATTAAATTAGTCTTGTATTTGAATGATTTCAAAACTATAAAACAATGCAGTTTACGTAAAAAAAAACAATGCAGTTAAAAATGGAAAAACATTCTGAGTCCAAGTGAAAAAAAGGTTGTCAGAAATGTGTAAATGTGTTGTCTCAATTTTCATGGTCCCGTACACAACTACGTTTGCACATACAAAGGATGAATGAGAGTCACACGTGAAGATAAGATTTAAATAGAAACATCAAATATCCGATTTCTCAACTTATTCCAACACACTTCAAAATCGTTATCTTCAGCTCATTGTGAGTTGAGATATGGCAAAATCTGGAAATTTGGTATCCCAAAGAAGCTTCAGCTCAATATTCAATCCCTGCTACACTGCTACCAAGGCCAAAACCTTCACTTTTCTCTCTCAGTTTCACACTTACAATAATACTAGTGGTAGTGCAACCATCACTGCTTCTACCAAAAGAAAGGACAACTTGGACTCTCCTTTGGTAACTCGATATACAGTTTCCCTTTCCCTTCTCCTTACTTTAATTCTGTGATATTAGCATGCCTTTTCTTATATCTGATTTTGTGATAAGACCACAAGTAGAGTTCATAGTGTTTTTGTCCTTCCAATTTCACATTCCTCCACTTTTAGTCCTTAGTGGCATTTATGCATCCAAAGACGTAGATGCAACAAACGGAACATTTTTCATATTTGTCCTAGTAAGAAAGCAAGATATTTTGTTTTGTCTTTTGTTTTTCCTCTCTCTTGAATGTATCAAATATCATTTAGAAGGTTCAAGGTTCAATCAGATTGAAGTTTTGTAATTTGTAAATGCTAATAAGTAGTAAGTGGAGCTGATGTGCTGTGCTGTGTGCATAACATATATTCATAGTAAATTTTGTAAGCTACATGAATTCATTTTTTAATATGGTTTCCTCTATGTGATCAAAAATTCAAAATCAAGATTGGGAAGAACACGAGTAGGGCAACCCGCCGTCTGATCACAATATCACCGGCCGACGGAAAATATCACGGGGAATGGACATGTGATTATCTTGTATCTTTGCGAGACCTACATTTACAGGATTTGATTGAAGTTGAAGATGATCCACGTAAGAATGCACAAGTAGCCATCAATCTCTGCGTCCAAAAGGTGGTTTCATCCAAATATTTTATCCTGACTTGTGAATTAGAAATTCTAGAATTAAATTGTAATTGTAATTGTAACCAAAGGAAGTAGCACTAATATGGTTAAGGATTGGAACTTGGACTTTCACTTTCTTATGAGTACGACTTAAAAAGTATAAGTCGGGTCAAATGAATTTTATTGGTGATATCATCAACATATCTAATCGCCATTTTCTTAGAACAAGAATTGTGATTATAACAAAATACTCTATCAAAATAAGAACTTAATACACTTTCTATTTGAAATTTATTTGTTTAGTCACTTGCCAACACTTGTAAATGGTAATGCCAGCATGCTAGCTTTGGTTTATCGGTAGATGCAAGAATCACCACATCCTTCCCTTCAAAATGCAGCAACTGTTCTTCCCCATATTGCCGACAGGTATTTCATTTCATTCATTATGAACTAATAATGATTAAGTTCTTTGTTTGAGATTTGTCACATACCTCAACATTACACAACACAATACAAATATATATTTTTCCTACATAAATATTATGGTGGAATCAAAACTAATTATGATTTACCCGAGCTGGAATTCTAAGTGGAACATCTCTGAAGTTTTAACCAGACTTTACTCAGAACCTCTTCTCTCTTTGCCCATTATTAAGACAAAAAAAGTACTAATTACGATTTATTGTAGTACCTTAGTATATCCTTGACATCATGAATTTGATCTCTATGCCTTGCCCAGTTTGGTCTATTATTTTTTCCAGATTTGTAAGACTTTTTTATTTTATTTTATTATTCCATCTACAATGTCAAATTCGGGTGGCACTTTGGTGACATTAATGTCACGGTGACATTAAATCTGAACCACACATTGCCATTGCCATTGCATCTGGGCCACACAACACATCTAATGTCACCCAATGTGTGGCCCAGATTTAATGTCACCGTGACATTAATGTCACACAAGTATTTCCCGTCAAATTCTATTCTATGTGGATGACTTTGTGTCTTCACCAATGATTCCAGATTGACACAAAATTTAACGTATGGGTTCTCAGGGCTACAAATAGAGATAAGCGTAAGACGCCGCTACCTGAAATTGGAGATGACCCTTATGTAAGTCTCAAATCAATTAGTTTCATTCTCTTTTTTTTCTCCTTCTGCACATTGATAGGAATAAATTGAAATATTTTATATTTAAAAAACTTGTAATTGCTTTATTCTTTAGAAATTAGAATGTCAAAAACTATCTGTGTTTCAAAAGAATACCTGAAAATGCTATCAAATATACACTTGTAGTAAGTTTTGCTATATTCACATACCAATTTTGAATTTGCCTAGTGATAGACAACTTACATATAATACGTTTTTCTTGACCTTTCCCAATTTTGTTTAGTAAAATATAGACTATATTGCATCTGTTCTATTATACTTGAATTCAATTTAGTTGTCCCTAAGCAATATTTGAGTGCTACTACTAAAGGCTCAAAATGAGTTACAGGAAATGCTGCACTGTTATAGTAATCAATGTTGCATAGTCTTTTTCAGTGGATATAGCTTTATAACAAATTTTAAAGAAGCAATACAGTACATGTACTAAATTTTTAGTCATGGGATGATTGAAAAACATAGCATACTAAATAATCTAACACAGCTCCTCATATAATACAGGTGATATATACCAGACCCGGATACGAAGTTGATCTTGATTCTATTGTAAAAGATGCCATCCGGCTAAACTCTGCAGTAAATGTATAA

Protein sequence

>MS.gene057658.t1

MHSSNEELTPTTVGIIATPSNIFTPSSTQERYVTTATKNYETTCWGCGLRLLLPSRAPVFKCGWCGAITDQSKQKCDKNGLRWRLLRDRCIVTIVIMFMLFIIFLSGIYASKDVDATNGTFFIFVLDLIEVEDDPRKNAQVAINLCVQKHASFGLSVDARITTSFPSKCSNCSSPYCRQIDTKFNVWVLRATNRDKRKTPLPEIGDDPYVIYTRPGYEVDLDSIVKDAIRLNSAVNV