Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69061.t1 | GAU43673.1 | 60.7 | 517 | 82 | 6 | 110 | 542 | 40 | 519 | 2.60E-163 | 585.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69061.t1 | Q9M2U3 | 30.5 | 141 | 71 | 4 | 108 | 232 | 182 | 311 | 1.4e-08 | 62.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69061.t1 | A0A2Z6NNS9 | 60.7 | 517 | 82 | 6 | 110 | 542 | 40 | 519 | 1.9e-163 | 585.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050855 | MS.gene69061 | 0.891803 | 2.84E-74 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69061.t1 | MTR_0697s0010 | 89.623 | 318 | 18 | 2 | 235 | 552 | 1 | 303 | 0.0 | 582 |
| MS.gene69061.t1 | MTR_3g075160 | 64.935 | 308 | 104 | 3 | 235 | 542 | 1 | 304 | 5.71e-135 | 395 |
| MS.gene69061.t1 | MTR_4g117940 | 86.792 | 106 | 14 | 0 | 2 | 107 | 71 | 176 | 3.84e-65 | 210 |
| MS.gene69061.t1 | MTR_3g453160 | 59.162 | 191 | 74 | 3 | 352 | 542 | 2 | 188 | 9.04e-64 | 208 |
| MS.gene69061.t1 | MTR_4g055725 | 48.077 | 208 | 88 | 2 | 6 | 213 | 78 | 265 | 7.41e-56 | 189 |
| MS.gene69061.t1 | MTR_1g052620 | 96.386 | 83 | 3 | 0 | 470 | 552 | 1 | 83 | 7.40e-49 | 168 |
| MS.gene69061.t1 | MTR_4g117120 | 52.985 | 134 | 63 | 0 | 2 | 135 | 149 | 282 | 1.70e-38 | 145 |
| MS.gene69061.t1 | MTR_7g094990 | 47.826 | 138 | 69 | 2 | 3 | 137 | 70 | 207 | 2.82e-25 | 108 |
| MS.gene69061.t1 | MTR_7g094990 | 43.478 | 115 | 51 | 4 | 268 | 381 | 167 | 268 | 1.71e-18 | 88.6 |
| MS.gene69061.t1 | MTR_8g463880 | 47.619 | 84 | 44 | 0 | 6 | 89 | 64 | 147 | 3.74e-17 | 79.0 |
| MS.gene69061.t1 | MTR_7g056633 | 45.882 | 85 | 46 | 0 | 6 | 90 | 32 | 116 | 2.14e-15 | 73.6 |
| MS.gene69061.t1 | MTR_5g063300 | 45.679 | 81 | 44 | 0 | 11 | 91 | 55 | 135 | 8.35e-14 | 69.3 |
| MS.gene69061.t1 | MTR_8g062180 | 31.298 | 131 | 88 | 2 | 251 | 381 | 68 | 196 | 2.29e-11 | 65.9 |
| MS.gene69061.t1 | MTR_3g045460 | 31.016 | 187 | 109 | 8 | 251 | 429 | 518 | 692 | 4.34e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69061.t1 | AT5G41980 | 43.612 | 227 | 112 | 4 | 6 | 229 | 42 | 255 | 2.85e-50 | 177 |
| MS.gene69061.t1 | AT1G43722 | 35.628 | 247 | 140 | 6 | 5 | 235 | 65 | 308 | 2.64e-37 | 141 |
| MS.gene69061.t1 | AT5G28950 | 46.739 | 92 | 46 | 2 | 91 | 181 | 9 | 98 | 6.13e-20 | 87.0 |
| MS.gene69061.t1 | AT5G35695 | 42.593 | 108 | 51 | 2 | 129 | 235 | 3 | 100 | 7.82e-19 | 85.9 |
| MS.gene69061.t1 | AT3G30525 | 32.558 | 129 | 81 | 2 | 113 | 235 | 1 | 129 | 2.98e-15 | 74.3 |
| MS.gene69061.t1 | AT1G30140 | 26.291 | 213 | 143 | 6 | 250 | 458 | 16 | 218 | 4.07e-11 | 63.5 |
| MS.gene69061.t1 | AT1G30140 | 26.291 | 213 | 143 | 6 | 250 | 458 | 16 | 218 | 4.07e-11 | 63.5 |
| MS.gene69061.t1 | AT5G27260 | 31.469 | 143 | 92 | 4 | 251 | 391 | 17 | 155 | 4.12e-11 | 64.7 |
Find 118 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGTTAGTTGTGGGTGTTTC+TGG | 0.116244 | 6.2:+85744655 | None:intergenic |
| GTCAAATTCATTGAACAAAT+TGG | 0.123596 | 6.2:-85744518 | MS.gene69061:CDS |
| AAAACAACCTAAACCAATTT+TGG | 0.140115 | 6.2:-85746340 | MS.gene69061:CDS |
| GGTCCAGGTGCAAGTGGTTT+TGG | 0.158436 | 6.2:-85745052 | MS.gene69061:CDS |
| GATAGCTTGGATACTGTATT+TGG | 0.169898 | 6.2:-85744826 | MS.gene69061:CDS |
| TTCTCGACCAAATGGTTTAA+AGG | 0.180350 | 6.2:-85746088 | MS.gene69061:CDS |
| GTCGCAAAGGTTATTGTCTT+TGG | 0.283992 | 6.2:+85744333 | None:intergenic |
| TCTGTGTTGCCCTCCAAAAT+TGG | 0.291608 | 6.2:+85746327 | None:intergenic |
| TGTGACATGTTGCAAGTTAT+TGG | 0.297963 | 6.2:-85746543 | MS.gene69061:CDS |
| GCATTTCAGTAATGTATTAT+TGG | 0.314714 | 6.2:-85746391 | MS.gene69061:CDS |
| AACGTTATTCTACTAATTAT+AGG | 0.329666 | 6.2:-85744597 | MS.gene69061:CDS |
| TGATTAGAAGACAATTTGTT+AGG | 0.357825 | 6.2:-85746434 | MS.gene69061:CDS |
| AATTATTTACATGAGTGATT+TGG | 0.358633 | 6.2:-85746613 | None:intergenic |
| TTGCCCTCCAAAATTGGTTT+AGG | 0.360631 | 6.2:+85746333 | None:intergenic |
| TTCACTCTTGATTCAATATG+TGG | 0.370372 | 6.2:+85745115 | None:intergenic |
| ACATATATGAATTGTAAATC+TGG | 0.373490 | 6.2:+85746165 | None:intergenic |
| TGAGGAACCTTTAAACCATT+TGG | 0.379841 | 6.2:+85746081 | None:intergenic |
| TATCTACCTTTGTCAGCTTC+CGG | 0.382459 | 6.2:+85746237 | None:intergenic |
| TCAAATTCATTGAACAAATT+GGG | 0.385007 | 6.2:-85744517 | MS.gene69061:CDS |
| AGAAGACAATTTGTTAGGTC+TGG | 0.394249 | 6.2:-85746429 | MS.gene69061:CDS |
| ACCAATACTCCATCTTCTTC+AGG | 0.398208 | 6.2:+85745265 | None:intergenic |
| TGATACCTTTGACCTCTATA+AGG | 0.398826 | 6.2:+85745922 | None:intergenic |
| ACCTGGGTACACTAAAGCTT+TGG | 0.401458 | 6.2:-85745185 | MS.gene69061:CDS |
| TATTATTATTTATGTGATGC+TGG | 0.401796 | 6.2:-85745973 | MS.gene69061:CDS |
| GTCGAGAAATAGCATCTCTA+AGG | 0.403893 | 6.2:+85746103 | None:intergenic |
| GGAAGGTTTGTTGAAATTAG+TGG | 0.408222 | 6.2:-85745242 | MS.gene69061:CDS |
| TAACGTTGTGGTTGGTTTGT+TGG | 0.419355 | 6.2:+85744613 | None:intergenic |
| AAGCTATCATAGTGTGGAAA+TGG | 0.420710 | 6.2:+85744841 | None:intergenic |
| TTCTGCAATCAAAGATATGT+TGG | 0.421190 | 6.2:-85745074 | MS.gene69061:CDS |
| CACAACTAACACTACTGCTC+CGG | 0.433275 | 6.2:-85744644 | MS.gene69061:CDS |
| TCAACACAAGAGGGCGGATC+AGG | 0.435640 | 6.2:-85744727 | MS.gene69061:CDS |
| GAGATAGCTACAAATGTGTT+AGG | 0.438755 | 6.2:-85746198 | MS.gene69061:CDS |
| AATTGTTTAGGAGCTCTTGA+TGG | 0.441154 | 6.2:-85746282 | MS.gene69061:CDS |
| GGATTTCTTACTCCTTATAG+AGG | 0.449800 | 6.2:-85745934 | MS.gene69061:CDS |
| TGGATTGAGGAAGCGGTTTG+TGG | 0.451918 | 6.2:-85744286 | MS.gene69061:CDS |
| TGAAATTAGTGGACGAGGGT+TGG | 0.454770 | 6.2:-85745231 | MS.gene69061:CDS |
| GCAACATGTCACATAGTTTG+TGG | 0.463824 | 6.2:+85746553 | None:intergenic |
| TTGGGTGAGATTTATGCTAA+TGG | 0.472566 | 6.2:-85744499 | MS.gene69061:CDS |
| AAAGATGATTGTAGTAGAGA+AGG | 0.475736 | 6.2:-85745014 | MS.gene69061:CDS |
| GATGCTATTTCTCGACCAAA+TGG | 0.486765 | 6.2:-85746096 | MS.gene69061:CDS |
| CACCTTAGTGAGTGGAGGAA+TGG | 0.492062 | 6.2:-85745901 | MS.gene69061:CDS |
| TGGCTTGCGTTGAAAATACA+AGG | 0.493139 | 6.2:-85746593 | MS.gene69061:CDS |
| ATCCATTCCTCCACTCACTA+AGG | 0.493857 | 6.2:+85745899 | None:intergenic |
| CACCCAAAACCACTTGCACC+TGG | 0.494386 | 6.2:+85745049 | None:intergenic |
| TATATTCACAACAAATTCCC+AGG | 0.506595 | 6.2:-85745157 | MS.gene69061:CDS |
| AGAAGGAGATTTATCGTCAA+TGG | 0.515104 | 6.2:-85744997 | MS.gene69061:CDS |
| ATACTCCTGGATTGAGGAAG+CGG | 0.519592 | 6.2:-85744293 | MS.gene69061:CDS |
| ATTTCCACACTATGATAGCT+TGG | 0.519974 | 6.2:-85744839 | MS.gene69061:CDS |
| TGAAGAAGATGGAGTATTGG+TGG | 0.524039 | 6.2:-85745263 | MS.gene69061:CDS |
| TATTCTACTAATTATAGGAC+CGG | 0.524704 | 6.2:-85744592 | MS.gene69061:CDS |
| TCCTGAAGAAGATGGAGTAT+TGG | 0.524913 | 6.2:-85745266 | MS.gene69061:CDS |
| ACAAACCGCTTCCTCAATCC+AGG | 0.525864 | 6.2:+85744288 | None:intergenic |
| CAATGGACTCCTGAAGAAGA+TGG | 0.527689 | 6.2:-85745274 | MS.gene69061:CDS |
| TCACTCTTGATTCAATATGT+GGG | 0.528294 | 6.2:+85745116 | None:intergenic |
| GAAGATGGAGTATTGGTGGA+AGG | 0.531767 | 6.2:-85745259 | MS.gene69061:CDS |
| TCTGCAATCAAAGATATGTT+GGG | 0.532433 | 6.2:-85745073 | MS.gene69061:CDS |
| AGGTAGATATAGAACAAGGA+AGG | 0.535159 | 6.2:-85746223 | MS.gene69061:CDS |
| TAGTAGAATAACGTTGTGGT+TGG | 0.536605 | 6.2:+85744605 | None:intergenic |
| ATCAAAGATATGTTGGGTCC+AGG | 0.536960 | 6.2:-85745067 | MS.gene69061:CDS |
| TTATACAAGCCAACTGCGGT+AGG | 0.541574 | 6.2:+85744868 | None:intergenic |
| GGTCTGGTGAAACGATTAGT+AGG | 0.541722 | 6.2:-85746413 | MS.gene69061:CDS |
| TCCAAAGCTTTAGTGTACCC+AGG | 0.543054 | 6.2:+85745184 | None:intergenic |
| GTCTGATGAAGAAGTGGTAA+TGG | 0.546068 | 6.2:-85744371 | MS.gene69061:CDS |
| ACAACTAACACTACTGCTCC+GGG | 0.546071 | 6.2:-85744643 | MS.gene69061:CDS |
| ACGAGAAACACACAGCTGAT+AGG | 0.548293 | 6.2:-85744435 | MS.gene69061:CDS |
| TGTGATGCTGGATACATGAA+TGG | 0.550292 | 6.2:-85745961 | MS.gene69061:CDS |
| CATTGATATGACTATTGAGA+TGG | 0.551195 | 6.2:-85744767 | MS.gene69061:CDS |
| GATAAAGCAGATGGTACTGT+AGG | 0.551746 | 6.2:-85744799 | MS.gene69061:CDS |
| GGAGCAGTAGTGTTAGTTGT+GGG | 0.552884 | 6.2:+85744646 | None:intergenic |
| ATTAGTGGACGAGGGTTGGA+AGG | 0.552892 | 6.2:-85745227 | MS.gene69061:CDS |
| ATATGAAACATTCTTCAGCT+AGG | 0.555082 | 6.2:-85745846 | MS.gene69061:CDS |
| CACTCTTGATTCAATATGTG+GGG | 0.559793 | 6.2:+85745117 | None:intergenic |
| ATTATAGGACCGGAAAGCGT+GGG | 0.561402 | 6.2:-85744582 | MS.gene69061:CDS |
| TTTGTTGAAATTAGTGGACG+AGG | 0.562026 | 6.2:-85745236 | MS.gene69061:CDS |
| CAATGGATACTCCTGGATTG+AGG | 0.562395 | 6.2:-85744299 | MS.gene69061:CDS |
| GATGCAAACTCATTTAAACC+TGG | 0.563444 | 6.2:-85745202 | MS.gene69061:CDS |
| TCTTGATGGCACTTACATCA+AGG | 0.564289 | 6.2:-85746268 | MS.gene69061:CDS |
| GACATGTTGCAAGTTATTGG+TGG | 0.572683 | 6.2:-85746540 | MS.gene69061:CDS |
| TTACTCCTTATAGAGGTCAA+AGG | 0.573713 | 6.2:-85745927 | MS.gene69061:CDS |
| CGGAGCAGTAGTGTTAGTTG+TGG | 0.579402 | 6.2:+85744645 | None:intergenic |
| AATTATAGGACCGGAAAGCG+TGG | 0.579883 | 6.2:-85744583 | MS.gene69061:CDS |
| ACACATGTGTGTGGAGGAGT+TGG | 0.585582 | 6.2:-85746502 | MS.gene69061:CDS |
| TTTGGAAAAGATAAAGCAGA+TGG | 0.586596 | 6.2:-85744808 | MS.gene69061:CDS |
| TATACAAGCCAACTGCGGTA+GGG | 0.587340 | 6.2:+85744869 | None:intergenic |
| TGGTTTGTTGGATTTGAACC+CGG | 0.587761 | 6.2:+85744625 | None:intergenic |
| TTGTTGAAATTAGTGGACGA+GGG | 0.590054 | 6.2:-85745235 | MS.gene69061:CDS |
| TTACATCAAGGTCAATGTGC+CGG | 0.590931 | 6.2:-85746256 | MS.gene69061:CDS |
| TAAGAATCACAAAGCGACAA+TGG | 0.591726 | 6.2:-85745291 | MS.gene69061:CDS |
| GCAGCTGATCCCTCCCAACC+AGG | 0.594468 | 6.2:+85746138 | None:intergenic |
| ATGCAAACTCATTTAAACCT+GGG | 0.599381 | 6.2:-85745201 | MS.gene69061:CDS |
| ATGTTGGGTCCAGGTGCAAG+TGG | 0.603177 | 6.2:-85745058 | MS.gene69061:CDS |
| GAGTTGTTGAATAGATGGAC+GGG | 0.607031 | 6.2:-85745333 | MS.gene69061:intron |
| GATGAAGAAGTGGTAATGGC+TGG | 0.607200 | 6.2:-85744367 | MS.gene69061:CDS |
| AATGGTTTAAAGGTTCCTCA+AGG | 0.609493 | 6.2:-85746078 | MS.gene69061:intron |
| TATGACTATTGAGATGGAGA+AGG | 0.615365 | 6.2:-85744761 | MS.gene69061:CDS |
| CAGTCTCACCCTACCGCAGT+TGG | 0.617770 | 6.2:-85744877 | MS.gene69061:CDS |
| AAAGGTATCACCTTAGTGAG+TGG | 0.618563 | 6.2:-85745909 | MS.gene69061:CDS |
| GGTAGATATAGAACAAGGAA+GGG | 0.618775 | 6.2:-85746222 | MS.gene69061:CDS |
| AAATGTTCAATCAACACAAG+AGG | 0.626386 | 6.2:-85744737 | MS.gene69061:CDS |
| AGAAACACACAGCTGATAGG+AGG | 0.626406 | 6.2:-85744432 | MS.gene69061:CDS |
| GCTGGATACATGAATGGAGA+AGG | 0.632475 | 6.2:-85745955 | MS.gene69061:CDS |
| TTATAGGACCGGAAAGCGTG+GGG | 0.635688 | 6.2:-85744581 | MS.gene69061:CDS |
| GATTTATCGTCAATGGTGCA+AGG | 0.635917 | 6.2:-85744990 | MS.gene69061:intron |
| TGAGTTGTTGAATAGATGGA+CGG | 0.636038 | 6.2:-85745334 | MS.gene69061:intron |
| TCCTACTCGACACATGTGTG+TGG | 0.639193 | 6.2:-85746511 | MS.gene69061:CDS |
| GGTATCACCTTAGTGAGTGG+AGG | 0.642466 | 6.2:-85745906 | MS.gene69061:CDS |
| AGGATTGTCTGATGAAGAAG+TGG | 0.642904 | 6.2:-85744377 | MS.gene69061:CDS |
| TACTCGACACATGTGTGTGG+AGG | 0.653616 | 6.2:-85746508 | MS.gene69061:CDS |
| AATGTTCAATCAACACAAGA+GGG | 0.654380 | 6.2:-85744736 | MS.gene69061:CDS |
| TTGCGTTGAAAATACAAGGA+TGG | 0.654392 | 6.2:-85746589 | MS.gene69061:CDS |
| AGGGCAACACAGACGAACGA+TGG | 0.667738 | 6.2:-85746317 | MS.gene69061:CDS |
| GTATCCAAGCTATCATAGTG+TGG | 0.667913 | 6.2:+85744835 | None:intergenic |
| TAATTAGTAGAATAACGTTG+TGG | 0.667964 | 6.2:+85744601 | None:intergenic |
| TCCACACACATGTGTCGAGT+AGG | 0.675300 | 6.2:+85746510 | None:intergenic |
| AATGTGCCGGAAGCTGACAA+AGG | 0.679136 | 6.2:-85746243 | MS.gene69061:CDS |
| ACAAAGGTAGATATAGAACA+AGG | 0.691343 | 6.2:-85746227 | MS.gene69061:CDS |
| GTTCAATCAACACAAGAGGG+CGG | 0.700627 | 6.2:-85744733 | MS.gene69061:CDS |
| TATAGGACCGGAAAGCGTGG+GGG | 0.729484 | 6.2:-85744580 | MS.gene69061:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTCATTAGATATATTTAAT+AGG | - | chr6.2:85745305-85745324 | MS.gene69061:CDS | 10.0% |
| !!! | AAATACTTTAAAAATTGTTT+AGG | - | chr6.2:85744579-85744598 | MS.gene69061:CDS | 10.0% |
| !! | TATCATGAATTTATCAATTA+TGG | + | chr6.2:85745928-85745947 | None:intergenic | 15.0% |
| !! | TTCATATTGAAAAATTCTTT+AGG | + | chr6.2:85745014-85745033 | None:intergenic | 15.0% |
| !!! | ACTTCAATTTTATTTATGAT+AGG | - | chr6.2:85744876-85744895 | MS.gene69061:CDS | 15.0% |
| !!! | CTTCAATTTTATTTATGATA+GGG | - | chr6.2:85744877-85744896 | MS.gene69061:CDS | 15.0% |
| !!! | TCTATTTTAAAAGAAATTGA+AGG | - | chr6.2:85746476-85746495 | MS.gene69061:CDS | 15.0% |
| !! | AACGTTATTCTACTAATTAT+AGG | - | chr6.2:85746276-85746295 | MS.gene69061:CDS | 20.0% |
| !! | ACATATATGAATTGTAAATC+TGG | + | chr6.2:85744711-85744730 | None:intergenic | 20.0% |
| !! | CATTAGATATATTTAATAGG+TGG | - | chr6.2:85745308-85745327 | MS.gene69061:CDS | 20.0% |
| !! | TATTATTATTTATGTGATGC+TGG | - | chr6.2:85744900-85744919 | MS.gene69061:intron | 20.0% |
| !! | TCAAATTCATTGAACAAATT+GGG | - | chr6.2:85746356-85746375 | MS.gene69061:CDS | 20.0% |
| !!! | GAATGTAATAGAAAATGTTT+TGG | - | chr6.2:85745049-85745068 | MS.gene69061:CDS | 20.0% |
| ! | GCATTTCAGTAATGTATTAT+TGG | - | chr6.2:85744482-85744501 | MS.gene69061:CDS | 25.0% |
| ! | GTCAAATTCATTGAACAAAT+TGG | - | chr6.2:85746355-85746374 | MS.gene69061:CDS | 25.0% |
| ! | TAATTAGTAGAATAACGTTG+TGG | + | chr6.2:85746275-85746294 | None:intergenic | 25.0% |
| ! | TATTCGTAAAGAAATGACAT+TGG | - | chr6.2:85745171-85745190 | MS.gene69061:CDS | 25.0% |
| ! | TATTCTACTAATTATAGGAC+CGG | - | chr6.2:85746281-85746300 | MS.gene69061:CDS | 25.0% |
| ! | TGCCAATATATGTAAAAACA+TGG | + | chr6.2:85744400-85744419 | None:intergenic | 25.0% |
| !! | AAAAATTCTTTAGGAGTAGA+TGG | + | chr6.2:85745005-85745024 | None:intergenic | 25.0% |
| !! | AAAACAACCTAAACCAATTT+TGG | - | chr6.2:85744533-85744552 | MS.gene69061:CDS | 25.0% |
| !! | AGCATATTTTGCATAGTTTA+TGG | - | chr6.2:85744847-85744866 | MS.gene69061:CDS | 25.0% |
| !! | ATTTATACTTTTGTACCTTG+AGG | + | chr6.2:85744813-85744832 | None:intergenic | 25.0% |
| !! | TGATTAGAAGACAATTTGTT+AGG | - | chr6.2:85744439-85744458 | MS.gene69061:CDS | 25.0% |
| !! | TTTTATCCTGTAAAAACTCA+AGG | - | chr6.2:85745112-85745131 | MS.gene69061:CDS | 25.0% |
| !!! | AAATGTTTTGGACTTTTGAA+AGG | - | chr6.2:85745061-85745080 | MS.gene69061:CDS | 25.0% |
| !!! | CTTTTAAAATAGAGACAATC+AGG | + | chr6.2:85746469-85746488 | None:intergenic | 25.0% |
| AAAGATGATTGTAGTAGAGA+AGG | - | chr6.2:85745859-85745878 | MS.gene69061:CDS | 30.0% | |
| AAATGTTCAATCAACACAAG+AGG | - | chr6.2:85746136-85746155 | MS.gene69061:CDS | 30.0% | |
| AATGTTCAATCAACACAAGA+GGG | - | chr6.2:85746137-85746156 | MS.gene69061:CDS | 30.0% | |
| ACAAAGGTAGATATAGAACA+AGG | - | chr6.2:85744646-85744665 | MS.gene69061:CDS | 30.0% | |
| ATATGAAACATTCTTCAGCT+AGG | - | chr6.2:85745027-85745046 | MS.gene69061:CDS | 30.0% | |
| ATGCAAACTCATTTAAACCT+GGG | - | chr6.2:85745672-85745691 | MS.gene69061:intron | 30.0% | |
| CATTGATATGACTATTGAGA+TGG | - | chr6.2:85746106-85746125 | MS.gene69061:CDS | 30.0% | |
| GATATATTTAATAGGTGGAG+AGG | - | chr6.2:85745313-85745332 | MS.gene69061:CDS | 30.0% | |
| TATATTCACAACAAATTCCC+AGG | - | chr6.2:85745716-85745735 | MS.gene69061:intron | 30.0% | |
| TCACTCTTGATTCAATATGT+GGG | + | chr6.2:85745760-85745779 | None:intergenic | 30.0% | |
| TCTCCTAAATTCAATTCCAA+AGG | + | chr6.2:85745199-85745218 | None:intergenic | 30.0% | |
| TCTGCAATCAAAGATATGTT+GGG | - | chr6.2:85745800-85745819 | MS.gene69061:intron | 30.0% | |
| TGTGAAAAAAATAGTCGCAA+AGG | + | chr6.2:85746556-85746575 | None:intergenic | 30.0% | |
| TTCACTCTTGATTCAATATG+TGG | + | chr6.2:85745761-85745780 | None:intergenic | 30.0% | |
| TTCTGCAATCAAAGATATGT+TGG | - | chr6.2:85745799-85745818 | MS.gene69061:intron | 30.0% | |
| TTTGGAAAAGATAAAGCAGA+TGG | - | chr6.2:85746065-85746084 | MS.gene69061:intron | 30.0% | |
| ! | ATTCTTCCTTGAGTTTTTAC+AGG | + | chr6.2:85745121-85745140 | None:intergenic | 30.0% |
| ! | CAATTCATATATGTTTTGCC+TGG | - | chr6.2:85744717-85744736 | MS.gene69061:CDS | 30.0% |
| ! | TTGTTGAGTTGTTGAATAGA+TGG | - | chr6.2:85745535-85745554 | MS.gene69061:intron | 30.0% |
| !! | CGCCATGTTTTTACATATAT+TGG | - | chr6.2:85744395-85744414 | MS.gene69061:CDS | 30.0% |
| !! | GATCCTTTGGAATTGAATTT+AGG | - | chr6.2:85745193-85745212 | MS.gene69061:CDS | 30.0% |
| !!! | TGCGACTATTTTTTTCACAA+TGG | - | chr6.2:85746557-85746576 | MS.gene69061:CDS | 30.0% |
| !!! | TTTTTTATACAAGCCAACTG+CGG | + | chr6.2:85746012-85746031 | None:intergenic | 30.0% |
| AAGCTATCATAGTGTGGAAA+TGG | + | chr6.2:85746035-85746054 | None:intergenic | 35.0% | |
| AATGGTTTAAAGGTTCCTCA+AGG | - | chr6.2:85744795-85744814 | MS.gene69061:CDS | 35.0% | |
| AATTGTTTAGGAGCTCTTGA+TGG | - | chr6.2:85744591-85744610 | MS.gene69061:CDS | 35.0% | |
| AGAAATGACATTGGATCCTT+TGG | - | chr6.2:85745180-85745199 | MS.gene69061:CDS | 35.0% | |
| AGAAGGAGATTTATCGTCAA+TGG | - | chr6.2:85745876-85745895 | MS.gene69061:CDS | 35.0% | |
| AGGTAGATATAGAACAAGGA+AGG | - | chr6.2:85744650-85744669 | MS.gene69061:CDS | 35.0% | |
| ATATTTAATAGGTGGAGAGG+TGG | - | chr6.2:85745316-85745335 | MS.gene69061:CDS | 35.0% | |
| ATTTCCACACTATGATAGCT+TGG | - | chr6.2:85746034-85746053 | MS.gene69061:intron | 35.0% | |
| CACTCTTGATTCAATATGTG+GGG | + | chr6.2:85745759-85745778 | None:intergenic | 35.0% | |
| GAGATAGCTACAAATGTGTT+AGG | - | chr6.2:85744675-85744694 | MS.gene69061:CDS | 35.0% | |
| GATAGCTTGGATACTGTATT+TGG | - | chr6.2:85746047-85746066 | MS.gene69061:intron | 35.0% | |
| GATGCAAACTCATTTAAACC+TGG | - | chr6.2:85745671-85745690 | MS.gene69061:intron | 35.0% | |
| GGATTTCTTACTCCTTATAG+AGG | - | chr6.2:85744939-85744958 | MS.gene69061:intron | 35.0% | |
| GGTAGATATAGAACAAGGAA+GGG | - | chr6.2:85744651-85744670 | MS.gene69061:CDS | 35.0% | |
| TAAGAATCACAAAGCGACAA+TGG | - | chr6.2:85745582-85745601 | MS.gene69061:intron | 35.0% | |
| TAGTAGAATAACGTTGTGGT+TGG | + | chr6.2:85746271-85746290 | None:intergenic | 35.0% | |
| TATGACTATTGAGATGGAGA+AGG | - | chr6.2:85746112-85746131 | MS.gene69061:CDS | 35.0% | |
| TGAGGAACCTTTAAACCATT+TGG | + | chr6.2:85744795-85744814 | None:intergenic | 35.0% | |
| TGAGTTGTTGAATAGATGGA+CGG | - | chr6.2:85745539-85745558 | MS.gene69061:intron | 35.0% | |
| TGATACCTTTGACCTCTATA+AGG | + | chr6.2:85744954-85744973 | None:intergenic | 35.0% | |
| TGTGACATGTTGCAAGTTAT+TGG | - | chr6.2:85744330-85744349 | MS.gene69061:CDS | 35.0% | |
| TTACTCCTTATAGAGGTCAA+AGG | - | chr6.2:85744946-85744965 | MS.gene69061:intron | 35.0% | |
| TTCTCGACCAAATGGTTTAA+AGG | - | chr6.2:85744785-85744804 | MS.gene69061:CDS | 35.0% | |
| TTGCGTTGAAAATACAAGGA+TGG | - | chr6.2:85744284-85744303 | MS.gene69061:CDS | 35.0% | |
| TTGGGTGAGATTTATGCTAA+TGG | - | chr6.2:85746374-85746393 | MS.gene69061:CDS | 35.0% | |
| ! | ACAACCTAAACCAATTTTGG+AGG | - | chr6.2:85744536-85744555 | MS.gene69061:CDS | 35.0% |
| ! | CAACCTAAACCAATTTTGGA+GGG | - | chr6.2:85744537-85744556 | MS.gene69061:CDS | 35.0% |
| ! | CATATATGTTTTGCCTGGTT+GGG | - | chr6.2:85744722-85744741 | MS.gene69061:CDS | 35.0% |
| ! | TCATATATGTTTTGCCTGGT+TGG | - | chr6.2:85744721-85744740 | MS.gene69061:CDS | 35.0% |
| ! | TTGTTGAAATTAGTGGACGA+GGG | - | chr6.2:85745638-85745657 | MS.gene69061:intron | 35.0% |
| ! | TTTGTTGAAATTAGTGGACG+AGG | - | chr6.2:85745637-85745656 | MS.gene69061:intron | 35.0% |
| ! | TTTTTCACAATGGATACTCC+TGG | - | chr6.2:85746567-85746586 | MS.gene69061:CDS | 35.0% |
| !! | AGAAGACAATTTGTTAGGTC+TGG | - | chr6.2:85744444-85744463 | MS.gene69061:CDS | 35.0% |
| !! | GGAAGGTTTGTTGAAATTAG+TGG | - | chr6.2:85745631-85745650 | MS.gene69061:intron | 35.0% |
| ACCAATACTCCATCTTCTTC+AGG | + | chr6.2:85745611-85745630 | None:intergenic | 40.0% | |
| AGGATTGTCTGATGAAGAAG+TGG | - | chr6.2:85746496-85746515 | MS.gene69061:CDS | 40.0% | |
| ATCAAAGATATGTTGGGTCC+AGG | - | chr6.2:85745806-85745825 | MS.gene69061:intron | 40.0% | |
| GACATGTTGCAAGTTATTGG+TGG | - | chr6.2:85744333-85744352 | MS.gene69061:CDS | 40.0% | |
| GAGTTGTTGAATAGATGGAC+GGG | - | chr6.2:85745540-85745559 | MS.gene69061:intron | 40.0% | |
| GATAAAGCAGATGGTACTGT+AGG | - | chr6.2:85746074-85746093 | MS.gene69061:intron | 40.0% | |
| GATTTATCGTCAATGGTGCA+AGG | - | chr6.2:85745883-85745902 | MS.gene69061:CDS | 40.0% | |
| GCAACATGTCACATAGTTTG+TGG | + | chr6.2:85744323-85744342 | None:intergenic | 40.0% | |
| GTATCCAAGCTATCATAGTG+TGG | + | chr6.2:85746041-85746060 | None:intergenic | 40.0% | |
| GTCGAGAAATAGCATCTCTA+AGG | + | chr6.2:85744773-85744792 | None:intergenic | 40.0% | |
| GTCGCAAAGGTTATTGTCTT+TGG | + | chr6.2:85746543-85746562 | None:intergenic | 40.0% | |
| GTCTGATGAAGAAGTGGTAA+TGG | - | chr6.2:85746502-85746521 | MS.gene69061:CDS | 40.0% | |
| TATCTACCTTTGTCAGCTTC+CGG | + | chr6.2:85744639-85744658 | None:intergenic | 40.0% | |
| TCCTGAAGAAGATGGAGTAT+TGG | - | chr6.2:85745607-85745626 | MS.gene69061:intron | 40.0% | |
| TGTGATGCTGGATACATGAA+TGG | - | chr6.2:85744912-85744931 | MS.gene69061:intron | 40.0% | |
| TTACATCAAGGTCAATGTGC+CGG | - | chr6.2:85744617-85744636 | MS.gene69061:CDS | 40.0% | |
| TTCTCTGATGAAGTCATGTC+CGG | - | chr6.2:85745226-85745245 | MS.gene69061:CDS | 40.0% | |
| ! | TAGCTTTTAGTGTGCAACCT+GGG | + | chr6.2:85745736-85745755 | None:intergenic | 40.0% |
| ! | TCTTGATGGCACTTACATCA+AGG | - | chr6.2:85744605-85744624 | MS.gene69061:CDS | 40.0% |
| ! | TGGCTTGCGTTGAAAATACA+AGG | - | chr6.2:85744280-85744299 | MS.gene69061:CDS | 40.0% |
| ! | TTGCCCTCCAAAATTGGTTT+AGG | + | chr6.2:85744543-85744562 | None:intergenic | 40.0% |
| !! | AAAGGTATCACCTTAGTGAG+TGG | - | chr6.2:85744964-85744983 | MS.gene69061:intron | 40.0% |
| !! | GATGCTATTTCTCGACCAAA+TGG | - | chr6.2:85744777-85744796 | MS.gene69061:CDS | 40.0% |
| !! | TAACGTTGTGGTTGGTTTGT+TGG | + | chr6.2:85746263-85746282 | None:intergenic | 40.0% |
| !! | TGAAGAAGATGGAGTATTGG+TGG | - | chr6.2:85745610-85745629 | MS.gene69061:intron | 40.0% |
| !! | TGGACTTTTGAAAGGACGTT+GGG | - | chr6.2:85745069-85745088 | MS.gene69061:CDS | 40.0% |
| !! | TGGTTTGTTGGATTTGAACC+CGG | + | chr6.2:85746251-85746270 | None:intergenic | 40.0% |
| !! | TTGGACTTTTGAAAGGACGT+TGG | - | chr6.2:85745068-85745087 | MS.gene69061:CDS | 40.0% |
| AATTATAGGACCGGAAAGCG+TGG | - | chr6.2:85746290-85746309 | MS.gene69061:CDS | 45.0% | |
| ACAACTAACACTACTGCTCC+GGG | - | chr6.2:85746230-85746249 | MS.gene69061:CDS | 45.0% | |
| ACCTGGGTACACTAAAGCTT+TGG | - | chr6.2:85745688-85745707 | MS.gene69061:intron | 45.0% | |
| ACGAGAAACACACAGCTGAT+AGG | - | chr6.2:85746438-85746457 | MS.gene69061:CDS | 45.0% | |
| AGAAACACACAGCTGATAGG+AGG | - | chr6.2:85746441-85746460 | MS.gene69061:CDS | 45.0% | |
| ATACTCCTGGATTGAGGAAG+CGG | - | chr6.2:85746580-85746599 | MS.gene69061:CDS | 45.0% | |
| ATCCATTCCTCCACTCACTA+AGG | + | chr6.2:85744977-85744996 | None:intergenic | 45.0% | |
| CAAGTACGACATGGAGTCAA+TGG | - | chr6.2:85745272-85745291 | MS.gene69061:CDS | 45.0% | |
| CAATGGATACTCCTGGATTG+AGG | - | chr6.2:85746574-85746593 | MS.gene69061:CDS | 45.0% | |
| CACAACTAACACTACTGCTC+CGG | - | chr6.2:85746229-85746248 | MS.gene69061:CDS | 45.0% | |
| CACCGTAGTTATCATGTCAC+CGG | + | chr6.2:85745248-85745267 | None:intergenic | 45.0% | |
| GCTGGATACATGAATGGAGA+AGG | - | chr6.2:85744918-85744937 | MS.gene69061:intron | 45.0% | |
| GGAGCAGTAGTGTTAGTTGT+GGG | + | chr6.2:85746230-85746249 | None:intergenic | 45.0% | |
| GGTCTGGTGAAACGATTAGT+AGG | - | chr6.2:85744460-85744479 | MS.gene69061:CDS | 45.0% | |
| GTCCGGTGACATGATAACTA+CGG | - | chr6.2:85745243-85745262 | MS.gene69061:CDS | 45.0% | |
| GTGTTAGTTGTGGGTGTTTC+TGG | + | chr6.2:85746221-85746240 | None:intergenic | 45.0% | |
| GTTCAATCAACACAAGAGGG+CGG | - | chr6.2:85746140-85746159 | MS.gene69061:CDS | 45.0% | |
| TATACAAGCCAACTGCGGTA+GGG | + | chr6.2:85746007-85746026 | None:intergenic | 45.0% | |
| TCTGTGTTGCCCTCCAAAAT+TGG | + | chr6.2:85744549-85744568 | None:intergenic | 45.0% | |
| TTATACAAGCCAACTGCGGT+AGG | + | chr6.2:85746008-85746027 | None:intergenic | 45.0% | |
| ! | ATATGTTTTGCCTGGTTGGG+AGG | - | chr6.2:85744725-85744744 | MS.gene69061:CDS | 45.0% |
| ! | ATTATAGGACCGGAAAGCGT+GGG | - | chr6.2:85746291-85746310 | MS.gene69061:CDS | 45.0% |
| ! | CAATGGACTCCTGAAGAAGA+TGG | - | chr6.2:85745599-85745618 | MS.gene69061:intron | 45.0% |
| ! | GTAGCTTTTAGTGTGCAACC+TGG | + | chr6.2:85745737-85745756 | None:intergenic | 45.0% |
| ! | TATGTTTTGCCTGGTTGGGA+GGG | - | chr6.2:85744726-85744745 | MS.gene69061:CDS | 45.0% |
| ! | TCCAAAGCTTTAGTGTACCC+AGG | + | chr6.2:85745692-85745711 | None:intergenic | 45.0% |
| ! | TGAAATTAGTGGACGAGGGT+TGG | - | chr6.2:85745642-85745661 | MS.gene69061:intron | 45.0% |
| !! | CATTGACTCCATGTCGTACT+TGG | + | chr6.2:85745274-85745293 | None:intergenic | 45.0% |
| !! | GAAGATGGAGTATTGGTGGA+AGG | - | chr6.2:85745614-85745633 | MS.gene69061:intron | 45.0% |
| !! | GATGAAGAAGTGGTAATGGC+TGG | - | chr6.2:85746506-85746525 | MS.gene69061:CDS | 45.0% |
| AATGTGCCGGAAGCTGACAA+AGG | - | chr6.2:85744630-85744649 | MS.gene69061:CDS | 50.0% | |
| ACAAACCGCTTCCTCAATCC+AGG | + | chr6.2:85746588-85746607 | None:intergenic | 50.0% | |
| ACACATGTGTGTGGAGGAGT+TGG | - | chr6.2:85744371-85744390 | MS.gene69061:CDS | 50.0% | |
| CACCTTAGTGAGTGGAGGAA+TGG | - | chr6.2:85744972-85744991 | MS.gene69061:intron | 50.0% | |
| CGGAGCAGTAGTGTTAGTTG+TGG | + | chr6.2:85746231-85746250 | None:intergenic | 50.0% | |
| CGGTGACATGATAACTACGG+TGG | - | chr6.2:85745246-85745265 | MS.gene69061:CDS | 50.0% | |
| GGTATCACCTTAGTGAGTGG+AGG | - | chr6.2:85744967-85744986 | MS.gene69061:intron | 50.0% | |
| GTAGGGTGAGACTGCGTTAA+AGG | + | chr6.2:85745990-85746009 | None:intergenic | 50.0% | |
| TACTCGACACATGTGTGTGG+AGG | - | chr6.2:85744365-85744384 | MS.gene69061:CDS | 50.0% | |
| TCCACACACATGTGTCGAGT+AGG | + | chr6.2:85744366-85744385 | None:intergenic | 50.0% | |
| TCCTACTCGACACATGTGTG+TGG | - | chr6.2:85744362-85744381 | MS.gene69061:CDS | 50.0% | |
| TGGATTGAGGAAGCGGTTTG+TGG | - | chr6.2:85746587-85746606 | MS.gene69061:CDS | 50.0% | |
| ! | ATTAGTGGACGAGGGTTGGA+AGG | - | chr6.2:85745646-85745665 | MS.gene69061:intron | 50.0% |
| ! | GTCCAGGTGCAAGTGGTTTT+GGG | - | chr6.2:85745822-85745841 | MS.gene69061:intron | 50.0% |
| ! | TTATAGGACCGGAAAGCGTG+GGG | - | chr6.2:85746292-85746311 | MS.gene69061:CDS | 50.0% |
| AGGGCAACACAGACGAACGA+TGG | - | chr6.2:85744556-85744575 | MS.gene69061:CDS | 55.0% | |
| ATGTTGGGTCCAGGTGCAAG+TGG | - | chr6.2:85745815-85745834 | MS.gene69061:intron | 55.0% | |
| CACCCAAAACCACTTGCACC+TGG | + | chr6.2:85745827-85745846 | None:intergenic | 55.0% | |
| TCAACACAAGAGGGCGGATC+AGG | - | chr6.2:85746146-85746165 | MS.gene69061:CDS | 55.0% | |
| ! | CCTTTTTCCCCCACGCTTTC+CGG | + | chr6.2:85746303-85746322 | None:intergenic | 55.0% |
| ! | CGGAAAGCGTGGGGGAAAAA+GGG | - | chr6.2:85746301-85746320 | MS.gene69061:CDS | 55.0% |
| ! | GGTCCAGGTGCAAGTGGTTT+TGG | - | chr6.2:85745821-85745840 | MS.gene69061:intron | 55.0% |
| ! | TATAGGACCGGAAAGCGTGG+GGG | - | chr6.2:85746293-85746312 | MS.gene69061:CDS | 55.0% |
| !!! | CAGGTGCAAGTGGTTTTGGG+TGG | - | chr6.2:85745825-85745844 | MS.gene69061:intron | 55.0% |
| CAGTCTCACCCTACCGCAGT+TGG | - | chr6.2:85745996-85746015 | MS.gene69061:intron | 60.0% | |
| CGGTGGAGCCAAGTACGACA+TGG | - | chr6.2:85745263-85745282 | MS.gene69061:CDS | 60.0% | |
| ! | CCGGAAAGCGTGGGGGAAAA+AGG | - | chr6.2:85746300-85746319 | MS.gene69061:CDS | 60.0% |
| GCAGCTGATCCCTCCCAACC+AGG | + | chr6.2:85744738-85744757 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.2 | gene | 85744270 | 85746625 | 85744270 | ID=MS.gene69061 |
| chr6.2 | mRNA | 85744270 | 85746625 | 85744270 | ID=MS.gene69061.t1;Parent=MS.gene69061 |
| chr6.2 | exon | 85746079 | 85746625 | 85746079 | ID=MS.gene69061.t1.exon1;Parent=MS.gene69061.t1 |
| chr6.2 | CDS | 85746079 | 85746625 | 85746079 | ID=cds.MS.gene69061.t1;Parent=MS.gene69061.t1 |
| chr6.2 | exon | 85745843 | 85745997 | 85745843 | ID=MS.gene69061.t1.exon2;Parent=MS.gene69061.t1 |
| chr6.2 | CDS | 85745843 | 85745997 | 85745843 | ID=cds.MS.gene69061.t1;Parent=MS.gene69061.t1 |
| chr6.2 | exon | 85744991 | 85745341 | 85744991 | ID=MS.gene69061.t1.exon3;Parent=MS.gene69061.t1 |
| chr6.2 | CDS | 85744991 | 85745341 | 85744991 | ID=cds.MS.gene69061.t1;Parent=MS.gene69061.t1 |
| chr6.2 | exon | 85744270 | 85744896 | 85744270 | ID=MS.gene69061.t1.exon4;Parent=MS.gene69061.t1 |
| chr6.2 | CDS | 85744270 | 85744896 | 85744270 | ID=cds.MS.gene69061.t1;Parent=MS.gene69061.t1 |
| Gene Sequence |
| Protein sequence |
