AlfalfaGEDB | MS.gene69302

M. sativa cultivar XinJiangDaYe / MS.gene69302

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF08263.15 PF12799.10 PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69302.t1	XP_013451894.2	75.3	1212	245	3	1	1162	1	1208	0.00E+00	1201.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69302.t1	Q6JN46	35.0	1139	570	19	33	1157	27	1009	1.4e-61	240.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69302.t1	A0A396HCS8	75.3	1212	245	3	1	1162	1	1208	0.0e+00	1201.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene054556	MS.gene69302	0.807965	3.91E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69302.t1	MTR_6g037750	75.352	1209	244	4	4	1162	1	1205	0.0	1771
MS.gene69302.t1	MTR_6g039180	76.238	1191	247	7	1	1161	1	1185	0.0	1756
MS.gene69302.t1	MTR_6g038730	74.283	1186	245	7	4	1162	1	1153	0.0	1675
MS.gene69302.t1	MTR_6g038670	72.634	1173	254	7	4	1161	1	1121	0.0	1642
MS.gene69302.t1	MTR_6g038700	69.565	1242	292	8	1	1162	1	1236	0.0	1632
MS.gene69302.t1	MTR_6g038940	69.687	1214	222	7	1	1162	1	1120	0.0	1572
MS.gene69302.t1	MTR_6g038910	74.323	1071	200	5	116	1158	48	1071	0.0	1514
MS.gene69302.t1	MTR_6g039110	68.847	1162	280	7	7	1161	1	1087	0.0	1497
MS.gene69302.t1	MTR_6g038790	81.804	632	109	2	526	1157	1	626	0.0	1023
MS.gene69302.t1	MTR_6g038790	31.492	543	305	18	424	913	1	529	6.88e-38	152

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69302.t1	AT2G34930	33.141	866	447	25	289	1089	104	902	2.17e-98	334
MS.gene69302.t1	AT2G34930	28.858	946	474	31	38	871	32	890	6.07e-62	229
MS.gene69302.t1	AT3G05660	31.746	819	465	28	370	1147	98	863	1.26e-76	272
MS.gene69302.t1	AT3G05660	28.419	841	445	33	24	792	21	776	1.04e-40	163
MS.gene69302.t1	AT1G74190	29.576	825	432	16	459	1142	134	950	5.48e-76	271
MS.gene69302.t1	AT1G74190	25.858	932	447	35	39	816	27	868	1.53e-36	150
MS.gene69302.t1	AT1G74170	29.486	953	557	26	282	1160	53	964	9.95e-76	271
MS.gene69302.t1	AT1G74170	28.670	722	404	30	112	792	217	868	1.61e-32	137
MS.gene69302.t1	AT1G74170	27.622	858	471	32	142	923	71	854	3.31e-31	133
MS.gene69302.t1	AT1G74170	25.426	881	453	27	111	864	65	868	1.73e-28	124

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Find 210 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGATTTAAAGAATGTA+AGG	0.406517	6.4:+13314864	None:intergenic
AAACTTAGTTCTCTCAGTTT+TGG	0.294474	6.4:+13315333	None:intergenic
AAATAATACATTGAAGGGTG+TGG	0.523854	6.4:-13314914	MS.gene69302:CDS
AAATGTAGGACCAAGTTTGC+AGG	0.405162	6.4:+13314159	None:intergenic
AAATGTGAAAGAGACTCCAA+TGG	0.614587	6.4:+13315663	None:intergenic
AAATTCCTACAAATATCGGA+AGG	0.652969	6.4:-13313121	MS.gene69302:CDS
AACCATTTGCAACCAACTAT+TGG	0.295534	6.4:+13315365	None:intergenic
AACCTACAAGAGCTTTATCT+TGG	0.385868	6.4:-13315501	MS.gene69302:CDS
AACTAAATGTATTACTATTG+AGG	0.505270	6.4:-13313676	MS.gene69302:CDS
AACTTATGTTTGACAATGAA+TGG	0.394789	6.4:+13315037	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATAATACATTGAAGGGTG+TGG	-	chr6.4:13313912-13313931	MS.gene69302:CDS	30.0%
AAATTCCTACAAATATCGGA+AGG	-	chr6.4:13315705-13315724	MS.gene69302:CDS	30.0%
AATTGAATGCATTCTTCACA+TGG	-	chr6.4:13315528-13315547	MS.gene69302:CDS	30.0%
ACAAACACTCCTTAAATTCA+AGG	-	chr6.4:13312811-13312830	MS.gene69302:CDS	30.0%
ACAATTGATCCTATTGAAGT+TGG	+	chr6.4:13315128-13315147	None:intergenic	30.0%
AGAAGTGGAAAAGTTGAATT+TGG	+	chr6.4:13313566-13313585	None:intergenic	30.0%
AGATATCATAATCTCCATGA+AGG	+	chr6.4:13312946-13312965	None:intergenic	30.0%
ATATTGACAACATGTGAAGA+TGG	+	chr6.4:13313426-13313445	None:intergenic	30.0%
ATATTTACGTGAAATGCAGA+AGG	-	chr6.4:13316131-13316150	MS.gene69302:CDS	30.0%
ATCAAGTATAGAAAGAGAAG+TGG	+	chr6.4:13313581-13313600	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.4	gene	13312680	13316168	13312680	ID=MS.gene69302
chr6.4	mRNA	13312680	13316168	13312680	ID=MS.gene69302.t1;Parent=MS.gene69302
chr6.4	exon	13312680	13316168	13312680	ID=MS.gene69302.t1.exon1;Parent=MS.gene69302.t1
chr6.4	CDS	13312680	13316168	13312680	ID=cds.MS.gene69302.t1;Parent=MS.gene69302.t1

Gene Sequence

>MS.gene69302

ATGACCACAATGTCAATCATGAATCCATTTTGTTTGAAATTGATTCAAACAATATTTCTCATCTGTTTCGTGTTTCAAGTACCCCAACTTGTTTGTTCAAAAGAAGTTGTTAGGTGCATACACAGTGAAAGACAAACACTCCTTAAATTCAAGGCTGGCCTTATTGATGAGTATGGCATGTTATCATCTTGGACGACAGAAGATTGCTGCGAATGGTATGGAATTGGTTGCAGCAACCTCACTGGCCATGTACTTATGCTCGACCTTCATGGAGATTATGATATCTTTAATATTGGTGATGGCAATACATTTTATATCAGCGGTGATATCCACAAGTCACTGATAGAGTTGCAACAATTAAAGTATTTGAACCTTAGTGGAAATGATTTTTACAACACTTATATCCCAGGTTTCTTTGGATCTTTAAGAAACCTAAGATACCTTGATCTTTCGAATTGTTATTTTGGCGGACAAATTCCTATTCCATTGGAGTCTCTTTCACATTTGAAATACTTGAATCTTTCCAACAATTATCTAAACGGTGTGATTCCTCATCAACTTGGAGATCTCTCCAACTTGCAATTTCTTGATCTCAGCAACAATGATTTGGAAGGAAGCATTCCATCTCAACTTGGAAAGCTTACGAACCTACAAGAGCTTTATCTTGGAGAATATAGTGCTCTAACAATTGACAACGAGGATCACAGTGGAGGTCAGTGGTTGTCTAATCTAACTTCTTTAACCCATCTTCACATGTTGTCAATATCCAATCTTAATAAATCCAATAGTTGGTTGCAAATGGTTGGTAAGTTACCAAAACTGAGAGAACTAAGTTTAGCACATTGTGGCCTTTCTGATCATTTTATCCATTCCTTGAGTCAATCCAAATTCAACTTTTCCACTTCTCTTTCTATACTTGATCTCTCTCGGAATAACTTTGTGTCATCTTCGATATTCCAGTGGGTGTCAAACATTAGTCACAATCTTGTAACGCTTGACCTTAGTCAAAATCAAATGGTGGATCTCACATCAAATAGTTTTTCCTGTAGTCTTCCAAAATTGAGAGAACTAAGATTATCTGGTAACAGCTTCACATCATTCATGATATTCCATTCATTGTCAAACATAAGTTCCAATCTTGTTGAGCTTGACCTTTCTAACAACCACTTGGAGCCTCCCCTATCACATGGTTATGGCACAGTGATGAACTTGCTTCGGGTACTTGACATATCAAATAATACATTGAAGGGTGTGGCATTTAAATCTTTCATGAATTTATGCGCCTTACATTCTTTAAATCTGTTTTTAAACAATTTCACAGAAGACCTTCAAACAATTCTTCAAAATTTGTCTAGTGGTTGTGTGAGAAACTCACTTCAATTGTTATACCTCAGTTCTAACAAAATCACTGGAACAGTACCCGACCTTTCTATATTCAAATCATTGAAAACATTGGATCTTTCTGATAATAAGCTGAGTGGAAAGATTCATGAAGGTAGTAGCTTGCCATTTCAGTTGGAGAGTTTATCCATCAGTTACAACTCTTTAGAAGGCAGGATTCCAAAAACATTTTGGATGAATGCATGTAAGTTAAAATCATTGGACCTCTCCAATAACAATTTCAGTGGTGAGCTTCAAGTAATAATCCATCACTTATCTAAATGTGCTAGATACTCACTCCAAGAATTATATCTAAGCATGAATCAAATCAATGGCACACTACCTGATCTCTCAATATTCTCATCTTTGGAAATATTCGATATTTCCGAAAATAAGCTAAATGGGAAGGTTGTTGAAGATGTTCGTTTTCCAACCAAACTAAGGACACTACGGATGCATTCAAACTCGTTGAATGGTGTGATCTCAGACTTCCATTTTTCTAGTATGTCAATGTTAAAGGAATTATCCTTGTCAAATAGTTCGCTAGCATTGAGATTTACCGAAAATTGGGTCCCGCCTTTTCAACTGGAAACTATAGGATTGGGATCCTGCAAACTTGGTCCTACATTTCCTAAATGGATTCAGACACAAAAACAGATTCGATATCTTGATATTTCTAATGCTGGAATTTCTGATGATGTTCCCAGGTGGTTTTGGGGTAAACTATCGTCACAAGAGTGTATGAGAATCAACATTTCATACAACAACCTCAAGGGATTAATTCCGAATCTTCAAGAAAAAAATAGGTGTACTTTTTTATCTATTTCATCAAATGAATTTGAAGGGGCCATTCCACCATTTCTACGAGGTTCTGGATTTATTGATTTGTCCAAAAACAAATTCTCTGATTCTCTTCCATTCCTATGTGCAAATGGTACAGATGCAATGTTAGGCCAGTTTGACCTTTCGAATAACCAATTATCTGGACAAGTTCCAGACTGTTGGAGCAATTTCAAAGCATTAGCTTATCTAGATTTGAGCCACAATAATTTTTCAGGGAAGATTCCAACTTCAATAGGATCAATTGTAAAACTAAATGTATTACTATTGAGGAACAATAGCTTAACAGCGGAGATCCCTTCTTCCTTGATGAACTGCACAAAGTTAGTAATGCTTGATTTGAGAGAAAACAGATTAGAAGGACTCATCCCTTATTGGATTGGAAGCGAATTAACACAGCTGCAAGTTTTAAGCTTACAAAGAAATCACTTCTTTGGAAGTTTACCATTTGAACTTTGCCATCTACAAAATATTCTACTCTTTGATCTATCATTAAACAATCTATCTGGACGAATTCCCAAATGCATTAAAAATCTCACTTCAATGACTCAAAAAGCTTCATCACCTGGTTTTACCAATCATTATTATGTTATACACCTAGGATATATGGCTTTTGGAAAAGAATATGAATTGAATGCATTCTTCACATGGAAAGGTGTAGAACATGTGTTTAGCAACAATGGATTGGTTCTTCTAAAAGTCATAGATCTCTCAAGCAATCATTTTTCAGGAGAGATTCCACCTGAAATTGCAGATTTGATTCAATTGGTCTCATTGAATTTATCAAGAAACATCTTAACAGGGAAAATTCCTACAAATATCGGAAGGTTAACATCACTTGACTTTCTTGATTTGTCACGAAACCAGTTGCTTGGTTCAATTCCTCCAAGTCTCTCTCAAATAGATCGAATCGGTGTGTTAGATTTGTCTCATAATCAATTATCTGGAGAAATTCCAACGAGTACACAACTACAAAGTTTCAATGCGTCATCTTACGAAGATAATCTTGATCTTTGTGGACCACCACTTGTAAAATTGTGTGCTCAGGGGGAGCCACCACATGAATCGAAAGATGAAGTTCAAGACGATGAAGATTTGCTTCTCAATCGTGGATTTTACATCAGTCTGACATTTGGATTTATTATAGGCTTCTGGGGAGTATTTGGCTCAATCCTAATTAAGCGCACTTGGAGACATGCTTATTTCAAGTTCATGAACAATTTAGCAGATAATATTTACGTGAAATGCAGAAGGTGGCTTAGAGACTAA

Protein sequence

>MS.gene69302.t1

MTTMSIMNPFCLKLIQTIFLICFVFQVPQLVCSKEVVRCIHSERQTLLKFKAGLIDEYGMLSSWTTEDCCEWYGIGCSNLTGHVLMLDLHGDYDIFNIGDGNTFYISGDIHKSLIELQQLKYLNLSGNDFYNTYIPGFFGSLRNLRYLDLSNCYFGGQIPIPLESLSHLKYLNLSNNYLNGVIPHQLGDLSNLQFLDLSNNDLEGSIPSQLGKLTNLQELYLGEYSALTIDNEDHSGGQWLSNLTSLTHLHMLSISNLNKSNSWLQMVGKLPKLRELSLAHCGLSDHFIHSLSQSKFNFSTSLSILDLSRNNFVSSSIFQWVSNISHNLVTLDLSQNQMVDLTSNSFSCSLPKLRELRLSGNSFTSFMIFHSLSNISSNLVELDLSNNHLEPPLSHGYGTVMNLLRVLDISNNTLKGVAFKSFMNLCALHSLNLFLNNFTEDLQTILQNLSSGCVRNSLQLLYLSSNKITGTVPDLSIFKSLKTLDLSDNKLSGKIHEGSSLPFQLESLSISYNSLEGRIPKTFWMNACKLKSLDLSNNNFSGELQVIIHHLSKCARYSLQELYLSMNQINGTLPDLSIFSSLEIFDISENKLNGKVVEDVRFPTKLRTLRMHSNSLNGVISDFHFSSMSMLKELSLSNSSLALRFTENWVPPFQLETIGLGSCKLGPTFPKWIQTQKQIRYLDISNAGISDDVPRWFWGKLSSQECMRINISYNNLKGLIPNLQEKNRCTFLSISSNEFEGAIPPFLRGSGFIDLSKNKFSDSLPFLCANGTDAMLGQFDLSNNQLSGQVPDCWSNFKALAYLDLSHNNFSGKIPTSIGSIVKLNVLLLRNNSLTAEIPSSLMNCTKLVMLDLRENRLEGLIPYWIGSELTQLQVLSLQRNHFFGSLPFELCHLQNILLFDLSLNNLSGRIPKCIKNLTSMTQKASSPGFTNHYYVIHLGYMAFGKEYELNAFFTWKGVEHVFSNNGLVLLKVIDLSSNHFSGEIPPEIADLIQLVSLNLSRNILTGKIPTNIGRLTSLDFLDLSRNQLLGSIPPSLSQIDRIGVLDLSHNQLSGEIPTSTQLQSFNASSYEDNLDLCGPPLVKLCAQGEPPHESKDEVQDDEDLLLNRGFYISLTFGFIIGFWGVFGSILIKRTWRHAYFKFMNNLADNIYVKCRRWLRD