AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene054556


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054556.t1 MTR_4g007910 95.775 284 11 1 14 297 17 299 0.0 533
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054556.t1 AT1G16080 72.203 295 82 0 3 297 19 313 1.71e-154 434

Find 88 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTTATGGCAAGTGGTCTT+TGG 0.280904 4.1:-87572128 MS.gene054556:CDS
TTTCTAGTACAAACCAAAAT+AGG 0.303632 4.1:+87573050 None:intergenic
GACTCTGAATCTGAAATTCT+TGG 0.306101 4.1:+87573226 None:intergenic
TTTCAACTCTTTAAGCCATT+TGG 0.333255 4.1:+87570002 None:intergenic
TGGAAAAGCTTTAGAAGGTA+TGG 0.356993 4.1:-87573132 MS.gene054556:CDS
AAACCACTCCTCTTTCTAGA+TGG 0.363477 4.1:-87573004 MS.gene054556:CDS
CTGATGCTAGTTCTGCTATC+AGG 0.381223 4.1:+87570605 None:intergenic
ATTTGTTCTGTCATGCTTGT+TGG 0.385378 4.1:-87571380 MS.gene054556:CDS
TAAGCAGCTGTCAATCCTTC+AGG 0.391739 4.1:+87572145 None:intergenic
AGAGTTGGAAAAGCTTTAGA+AGG 0.394622 4.1:-87573137 MS.gene054556:CDS
GAAGGATTGACAGCTGCTTA+TGG 0.394793 4.1:-87572142 MS.gene054556:CDS
TTCTGTTGGTGTTGTGGAAA+AGG 0.395942 4.1:-87571339 MS.gene054556:CDS
TCACTTTCCCACGGCAGTTA+AGG 0.401542 4.1:-87570506 MS.gene054556:CDS
AGGGGTTTCTGTTGGTGTTG+TGG 0.406514 4.1:-87571345 MS.gene054556:CDS
GTATCAGTCTTACCATCAAT+AGG 0.407023 4.1:+87572172 None:intergenic
ATCAGCAGCAGCTAGTGAAA+AGG 0.412413 4.1:-87570587 MS.gene054556:CDS
TATCAGTCTTACCATCAATA+GGG 0.414325 4.1:+87572173 None:intergenic
TCAGCAGCAGCTAGTGAAAA+GGG 0.417729 4.1:-87570586 MS.gene054556:CDS
GAGAGTAAAGGTTTGAAAGA+TGG 0.424292 4.1:-87572241 MS.gene054556:CDS
CTTGGAGAGTCCCCTATTGA+TGG 0.426493 4.1:-87572184 MS.gene054556:CDS
GGTCATGTTTGCAGTTCAAA+TGG 0.443722 4.1:-87570098 MS.gene054556:intron
ACGGTTCCAACATTCCATTC+TGG 0.447867 4.1:+87572269 None:intergenic
GACATGGATCCTGCTTGCCT+TGG 0.448950 4.1:+87570034 None:intergenic
AGAGTAAAGGTTTGAAAGAT+GGG 0.455581 4.1:-87572240 MS.gene054556:CDS
CCGGCCGTCATTGTCGGCGG+TGG 0.458905 4.1:-87573161 MS.gene054556:CDS
GTTGCTCCGGCCGTCATTGT+CGG 0.460579 4.1:-87573167 MS.gene054556:CDS
TTGTTGGAGCGCGTCATGGA+GGG 0.466204 4.1:-87571364 MS.gene054556:CDS
ACTCTGAATCTGAAATTCTT+GGG 0.469018 4.1:+87573227 None:intergenic
AGATGTTAGAGAAGCTCATA+TGG 0.474520 4.1:-87571403 MS.gene054556:CDS
GGAAAAGCTTTAGAAGGTAT+GGG 0.482710 4.1:-87573131 MS.gene054556:CDS
ATAGGACCTTCAAAATCAAC+GGG 0.484016 4.1:+87573068 None:intergenic
TATTTCGCAGTGTCAAAACT+TGG 0.486806 4.1:-87572202 MS.gene054556:CDS
CGTCATGGAGGGGTTTCTGT+TGG 0.491161 4.1:-87571353 MS.gene054556:CDS
ACATGGATCCTGCTTGCCTT+GGG 0.493651 4.1:+87570035 None:intergenic
GGCTATTGCCCAAGGCAAGC+AGG 0.503997 4.1:-87570043 MS.gene054556:CDS
AGTTCAAATGGAGGAATGGT+TGG 0.513675 4.1:-87570086 MS.gene054556:CDS
TGTTGGAGCGCGTCATGGAG+GGG 0.514554 4.1:-87571363 MS.gene054556:CDS
CTTGTTGGAGCGCGTCATGG+AGG 0.518604 4.1:-87571365 MS.gene054556:CDS
ATTGTCGGCGGTGGAAGAGT+TGG 0.520026 4.1:-87573152 MS.gene054556:CDS
ATGCTTGTTGGAGCGCGTCA+TGG 0.522740 4.1:-87571368 MS.gene054556:CDS
GACGGCCGGAGCAACTTTAG+TGG 0.529509 4.1:+87573175 None:intergenic
CTTTACCTCCTTAACTGCCG+TGG 0.529569 4.1:+87570498 None:intergenic
CTCGGGAGTACGCACACAAA+CGG 0.530423 4.1:+87570536 None:intergenic
CACCACCACTAAAGTTGCTC+CGG 0.536001 4.1:-87573180 MS.gene054556:CDS
AGCTGTCAATCCTTCAGGAT+TGG 0.538382 4.1:+87572150 None:intergenic
GTTTCTGAAAGATTGAAAGC+TGG 0.541448 4.1:-87572103 MS.gene054556:CDS
CTGCGAAATATGCCAACACT+TGG 0.541538 4.1:+87572215 None:intergenic
CATGTCCTATGCATACCAAA+TGG 0.544512 4.1:-87570017 MS.gene054556:CDS
GGGAAAGTGAGCAACAGCTC+GGG 0.545271 4.1:+87570519 None:intergenic
TGGGAAAGTGAGCAACAGCT+CGG 0.549510 4.1:+87570518 None:intergenic
GAACCGTGGCTTGAGAGTAA+AGG 0.552420 4.1:-87572253 MS.gene054556:CDS
ATACCGTTCCATCTAGAAAG+AGG 0.554081 4.1:+87572996 None:intergenic
AATAGGACCTTCAAAATCAA+CGG 0.556089 4.1:+87573067 None:intergenic
TTAAGCCATTTGGTATGCAT+AGG 0.559098 4.1:+87570012 None:intergenic
CGCACACAAACGGTCTTCCA+TGG 0.562813 4.1:+87570546 None:intergenic
GTTAAAGTTTGAAGAAGCCA+TGG 0.564615 4.1:-87570563 MS.gene054556:CDS
TGAATACTACCTTGCAAGAG+AGG 0.565186 4.1:+87572077 None:intergenic
GCTTTAGAAGGTATGGGAGA+TGG 0.570273 4.1:-87573125 MS.gene054556:CDS
TCTTCCACCGCCGACAATGA+CGG 0.573890 4.1:+87573157 None:intergenic
TTTACCTCCTTAACTGCCGT+GGG 0.574195 4.1:+87570499 None:intergenic
AGCTGGAGGCCTCTCTTGCA+AGG 0.574480 4.1:-87572086 MS.gene054556:intron
ATTCAGAGTCTCTTCCGCCA+TGG 0.580472 4.1:-87573213 MS.gene054556:CDS
GAAAGATGGGAACCAAGTGT+TGG 0.583229 4.1:-87572227 MS.gene054556:CDS
CGCTGTTGCTGTAAGAGTGG+AGG 0.583827 4.1:+87573253 None:intergenic
CTTTCCCACGGCAGTTAAGG+AGG 0.584441 4.1:-87570503 MS.gene054556:intron
TCTGAGAAGGCTATTGCCCA+AGG 0.586147 4.1:-87570051 MS.gene054556:CDS
GGTGGTGACGGTAGAAGCCA+TGG 0.587494 4.1:+87573196 None:intergenic
TTGCAGTTCAAATGGAGGAA+TGG 0.597693 4.1:-87570090 MS.gene054556:intron
ATCAGTCTTACCATCAATAG+GGG 0.599930 4.1:+87572174 None:intergenic
TCTGAAAGATTGAAAGCTGG+AGG 0.599953 4.1:-87572100 MS.gene054556:CDS
CCACCGCCGACAATGACGGC+CGG 0.601720 4.1:+87573161 None:intergenic
AGCTGTTGCTCACTTTCCCA+CGG 0.605457 4.1:-87570515 MS.gene054556:CDS
CATGTTTGCAGTTCAAATGG+AGG 0.608904 4.1:-87570095 MS.gene054556:intron
AGCAACTTTAGTGGTGGTGA+CGG 0.613469 4.1:+87573184 None:intergenic
TGACAGCTGCTTATGGCAAG+TGG 0.617113 4.1:-87572135 MS.gene054556:CDS
AAGACTGATACCAATCCTGA+AGG 0.623096 4.1:-87572160 MS.gene054556:CDS
GGCCGGAGCAACTTTAGTGG+TGG 0.623121 4.1:+87573178 None:intergenic
CATTTGGTATGCATAGGACA+TGG 0.629892 4.1:+87570018 None:intergenic
GCTCCGGCCGTCATTGTCGG+CGG 0.635181 4.1:-87573164 MS.gene054556:CDS
AAAGCTTACTTACTTCAAGG+TGG 0.643257 4.1:+87571312 None:intergenic
AAGCGCTGTTGCTGTAAGAG+TGG 0.643492 4.1:+87573250 None:intergenic
AGAATGGAATGTTGGAACCG+TGG 0.644899 4.1:-87572267 MS.gene054556:CDS
ACTCCTCTTTCTAGATGGAA+CGG 0.645963 4.1:-87572999 MS.gene054556:intron
AAACCTTTACTCTCAAGCCA+CGG 0.646640 4.1:+87572250 None:intergenic
CAGCAGCAGCTAGTGAAAAG+GGG 0.664557 4.1:-87570585 MS.gene054556:CDS
GTTCCATCTAGAAAGAGGAG+TGG 0.697057 4.1:+87573001 None:intergenic
AAAGATCTTGTTGTGAAACG+TGG 0.716380 4.1:-87573101 MS.gene054556:CDS
GGTGACGGTAGAAGCCATGG+CGG 0.761423 4.1:+87573199 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CCATTTAAAAATTAAAAATA+TGG + chr4.1:87572342-87572361 None:intergenic 10.0%
!!! CCATATTTTTAATTTTTAAA+TGG - chr4.1:87572339-87572358 MS.gene054556:intron 10.0%
!!! TTAATAAAAACATATTTTAC+GGG - chr4.1:87571271-87571290 MS.gene054556:intron 10.0%
!! AATTATGAATGTATTCTAAT+TGG + chr4.1:87573088-87573107 None:intergenic 15.0%
!! ATTATGAATGTATTCTAATT+GGG + chr4.1:87573087-87573106 None:intergenic 15.0%
!! GTTTATAATGAATTATTAAG+CGG - chr4.1:87572140-87572159 MS.gene054556:CDS 15.0%
!!! GAACATATTTAATTTTAACT+TGG + chr4.1:87572431-87572450 None:intergenic 15.0%
!! ATAACATGAGAATAAATTAG+AGG - chr4.1:87572861-87572880 MS.gene054556:intron 20.0%
!! TTAGTGTTTAATCAATATCT+TGG - chr4.1:87573152-87573171 MS.gene054556:CDS 20.0%
!!! ATCATTTTAGTATTGCTATA+TGG - chr4.1:87572315-87572334 MS.gene054556:intron 20.0%
!!! TAGAAGAAAATTAATGGATA+TGG + chr4.1:87571578-87571597 None:intergenic 20.0%
!!! TCATTTTAGTATTGCTATAT+GGG - chr4.1:87572316-87572335 MS.gene054556:intron 20.0%
!!! TTTTAATGACATAAAAGAGA+GGG - chr4.1:87570871-87570890 MS.gene054556:intron 20.0%
!!! TTTTTAATGACATAAAAGAG+AGG - chr4.1:87570870-87570889 MS.gene054556:intron 20.0%
! AAGTTTATGAATTTCAAGCA+CGG - chr4.1:87571659-87571678 MS.gene054556:intron 25.0%
! ATCTTTAGATGAAAATCAGA+AGG - chr4.1:87571422-87571441 MS.gene054556:CDS 25.0%
! ATTTGTATATATAGAGAGAG+TGG + chr4.1:87572206-87572225 None:intergenic 25.0%
! CAATCTATTTATTCAGTTGT+TGG - chr4.1:87572457-87572476 MS.gene054556:intron 25.0%
! CGAAGATAGAAGAAAATTAA+TGG + chr4.1:87571584-87571603 None:intergenic 25.0%
! CTAAAGATTGTGATACTTAT+GGG + chr4.1:87570379-87570398 None:intergenic 25.0%
! GTTTGATATTTGTACAATAC+CGG - chr4.1:87570723-87570742 MS.gene054556:intron 25.0%
! TTAAGAAGTTTACCCAAAAA+AGG + chr4.1:87570403-87570422 None:intergenic 25.0%
! TTATTCTCATGTTATCAGTA+TGG + chr4.1:87572856-87572875 None:intergenic 25.0%
! TTTGTTACTATTTCAAGCTT+AGG + chr4.1:87571617-87571636 None:intergenic 25.0%
!! GCATATTAACTTTGAGAAAA+TGG + chr4.1:87571992-87572011 None:intergenic 25.0%
!! TAAAAACATATTTTACGGGA+CGG - chr4.1:87571275-87571294 MS.gene054556:intron 25.0%
!! TTTCTAGTACAAACCAAAAT+AGG + chr4.1:87570224-87570243 None:intergenic 25.0%
!!! AGTTGGATTATTTTTTGGTT+AGG + chr4.1:87573038-87573057 None:intergenic 25.0%
!!! GATTTTTGAGGAACTAATTA+TGG - chr4.1:87570893-87570912 MS.gene054556:intron 25.0%
!!! TGATGAGTTGGATTATTTTT+TGG + chr4.1:87573043-87573062 None:intergenic 25.0%
!!! TTCACGTTTATTTTCCAAAT+CGG + chr4.1:87571471-87571490 None:intergenic 25.0%
AAATCTTAGTAAGTCCGATT+TGG - chr4.1:87571454-87571473 MS.gene054556:intron 30.0%
AAATTGATTACCTATGTGTC+TGG - chr4.1:87572526-87572545 MS.gene054556:intron 30.0%
AATAGGACCTTCAAAATCAA+CGG + chr4.1:87570207-87570226 None:intergenic 30.0%
AATGAGTTGTTACTATCGTT+TGG - chr4.1:87570958-87570977 MS.gene054556:intron 30.0%
AATTAAACCCCTCTAATCTT+AGG + chr4.1:87571691-87571710 None:intergenic 30.0%
AATTGATTACCTATGTGTCT+GGG - chr4.1:87572527-87572546 MS.gene054556:intron 30.0%
AGAGTAAAGGTTTGAAAGAT+GGG - chr4.1:87571031-87571050 MS.gene054556:intron 30.0%
ATCAATTTCTGTGTGCAAAT+AGG - chr4.1:87572379-87572398 MS.gene054556:intron 30.0%
ATGAATGAAATGTGATGAGT+TGG + chr4.1:87573055-87573074 None:intergenic 30.0%
CCATAAGTATCACAATCTTT+AGG - chr4.1:87570377-87570396 MS.gene054556:intron 30.0%
CCATAAGTTTCACATTCTTT+AGG - chr4.1:87570316-87570335 MS.gene054556:intron 30.0%
CCTAAAGAATGTGAAACTTA+TGG + chr4.1:87570319-87570338 None:intergenic 30.0%
CCTAAAGATTGTGATACTTA+TGG + chr4.1:87570380-87570399 None:intergenic 30.0%
GAAAATTCCTAAGATTAGAG+GGG - chr4.1:87571681-87571700 MS.gene054556:intron 30.0%
GGAAAATTCCTAAGATTAGA+GGG - chr4.1:87571680-87571699 MS.gene054556:intron 30.0%
GTAACCAAAACAAGAAAACT+TGG + chr4.1:87571250-87571269 None:intergenic 30.0%
GTCATTCTATCTTCATTCAA+CGG - chr4.1:87571497-87571516 MS.gene054556:intron 30.0%
GTCTTATATTTCACAGATGA+TGG - chr4.1:87572993-87573012 MS.gene054556:intron 30.0%
TACAAACTGTACACTTCAAA+TGG - chr4.1:87570685-87570704 MS.gene054556:intron 30.0%
TATCAGTCTTACCATCAATA+GGG + chr4.1:87571101-87571120 None:intergenic 30.0%
TCAATTTCATAGTTGCAACA+TGG + chr4.1:87572587-87572606 None:intergenic 30.0%
TCATCTGTGAAATATAAGAC+TGG + chr4.1:87572993-87573012 None:intergenic 30.0%
TTTCAACTCTTTAAGCCATT+TGG + chr4.1:87573272-87573291 None:intergenic 30.0%
TTTGTCAATCAACATTTGCT+TGG - chr4.1:87572018-87572037 MS.gene054556:intron 30.0%
! AACTTTGAGAAAATGGCAAT+AGG + chr4.1:87571985-87572004 None:intergenic 30.0%
! AATTGTGTCGTTAAGATAGT+TGG - chr4.1:87572080-87572099 MS.gene054556:intron 30.0%
! ACTCTGAATCTGAAATTCTT+GGG + chr4.1:87570047-87570066 None:intergenic 30.0%
! ATAAAAGAGAGGGATTTTTG+AGG - chr4.1:87570881-87570900 MS.gene054556:intron 30.0%
! GGATTGCTTAACAATTTTTC+TGG - chr4.1:87571359-87571378 MS.gene054556:CDS 30.0%
! TTTTCTTCTATCTTCGATGT+TGG - chr4.1:87571588-87571607 MS.gene054556:intron 30.0%
!! CTCACGTGTTATTGTATTTT+TGG - chr4.1:87571338-87571357 MS.gene054556:CDS 30.0%
!! TGATTTTGAAGGTCCTATTT+TGG - chr4.1:87570208-87570227 MS.gene054556:intron 30.0%
!!! ACAATCTTTAGGCCTTTTTT+GGG - chr4.1:87570388-87570407 MS.gene054556:intron 30.0%
AAACAAGAAAACTTGGCTAC+TGG + chr4.1:87571243-87571262 None:intergenic 35.0%
AAAGCTTACTTACTTCAAGG+TGG + chr4.1:87571962-87571981 None:intergenic 35.0%
AGAGAATTTCGTTCTTTGTC+TGG - chr4.1:87572950-87572969 MS.gene054556:intron 35.0%
AGATATTATCCCAGACACAT+AGG + chr4.1:87572539-87572558 None:intergenic 35.0%
AGATGTTAGAGAAGCTCATA+TGG - chr4.1:87571868-87571887 MS.gene054556:intron 35.0%
AGGAAAGCTTACTTACTTCA+AGG + chr4.1:87571965-87571984 None:intergenic 35.0%
ATAGGACCTTCAAAATCAAC+GGG + chr4.1:87570206-87570225 None:intergenic 35.0%
ATCAGTCTTACCATCAATAG+GGG + chr4.1:87571100-87571119 None:intergenic 35.0%
ATTCTGATTCAACTGAACTC+TGG + chr4.1:87571404-87571423 None:intergenic 35.0%
ATTTGTTCTGTCATGCTTGT+TGG - chr4.1:87571891-87571910 MS.gene054556:intron 35.0%
CGGAAAATTCCTAAGATTAG+AGG - chr4.1:87571679-87571698 MS.gene054556:intron 35.0%
CTAACTTGAAAAAGTGACAG+TGG + chr4.1:87570768-87570787 None:intergenic 35.0%
CTCAAATCTGCAATCTAAAG+AGG - chr4.1:87570644-87570663 MS.gene054556:intron 35.0%
GAGAGTAAAGGTTTGAAAGA+TGG - chr4.1:87571030-87571049 MS.gene054556:intron 35.0%
GGTTTCGATATATACAGTGA+TGG - chr4.1:87571518-87571537 MS.gene054556:intron 35.0%
GTACAGTTTGTAACACATCA+TGG + chr4.1:87570677-87570696 None:intergenic 35.0%
GTATCAGTCTTACCATCAAT+AGG + chr4.1:87571102-87571121 None:intergenic 35.0%
GTTAAAGTTTGAAGAAGCCA+TGG - chr4.1:87572708-87572727 MS.gene054556:intron 35.0%
TATTTCGCAGTGTCAAAACT+TGG - chr4.1:87571069-87571088 MS.gene054556:intron 35.0%
TCTCCCAAAAAGAAAACAAC+AGG + chr4.1:87571302-87571321 None:intergenic 35.0%
TGTGATACTTATGGGACTAA+TGG + chr4.1:87570371-87570390 None:intergenic 35.0%
TGTGTCAGTGTTATCATGTA+TGG - chr4.1:87572228-87572247 MS.gene054556:CDS 35.0%
TTAAGCCATTTGGTATGCAT+AGG + chr4.1:87573262-87573281 None:intergenic 35.0%
TTGCACACAGAAATTGATGT+AGG + chr4.1:87572377-87572396 None:intergenic 35.0%
TTGTAACACATCATGGATTC+AGG + chr4.1:87570670-87570689 None:intergenic 35.0%
! AAAGATCTTGTTGTGAAACG+TGG - chr4.1:87570170-87570189 MS.gene054556:intron 35.0%
! GACTCTGAATCTGAAATTCT+TGG + chr4.1:87570048-87570067 None:intergenic 35.0%
! GTTTCTGAAAGATTGAAAGC+TGG - chr4.1:87571168-87571187 MS.gene054556:intron 35.0%
! GTTTTTCCAGAATGGAATGT+TGG - chr4.1:87570996-87571015 MS.gene054556:intron 35.0%
! TCACATTCTTTAGGCTTGTT+TGG - chr4.1:87570325-87570344 MS.gene054556:intron 35.0%
! TTTTATACAACCACATGTGC+CGG + chr4.1:87570745-87570764 None:intergenic 35.0%
!! AGAGTTGGAAAAGCTTTAGA+AGG - chr4.1:87570134-87570153 MS.gene054556:intron 35.0%
!! GGAAAAGCTTTAGAAGGTAT+GGG - chr4.1:87570140-87570159 MS.gene054556:intron 35.0%
!! GTAGCCAAGTTTTCTTGTTT+TGG - chr4.1:87571243-87571262 MS.gene054556:intron 35.0%
!! GTTTTATGCTCTTTCTGAGA+AGG - chr4.1:87573207-87573226 MS.gene054556:CDS 35.0%
!! TGGAAAAGCTTTAGAAGGTA+TGG - chr4.1:87570139-87570158 MS.gene054556:intron 35.0%
!!! CACAATCTTTAGGCCTTTTT+TGG - chr4.1:87570387-87570406 MS.gene054556:intron 35.0%
!!! GATTTGGTGTTTTTCCAGAA+TGG - chr4.1:87570988-87571007 MS.gene054556:intron 35.0%
!!! GGACCTGTTGTTTTCTTTTT+GGG - chr4.1:87571296-87571315 MS.gene054556:intron 35.0%
!!! TCAATTCCCGTTGATTTTGA+AGG - chr4.1:87570197-87570216 MS.gene054556:intron 35.0%
AAACCACTCCTCTTTCTAGA+TGG - chr4.1:87570267-87570286 MS.gene054556:intron 40.0%
AAACCTTTACTCTCAAGCCA+CGG + chr4.1:87571024-87571043 None:intergenic 40.0%
AAGACTGATACCAATCCTGA+AGG - chr4.1:87571111-87571130 MS.gene054556:intron 40.0%
AATACGCTGAAACCAGCTTA+CGG - chr4.1:87570567-87570586 MS.gene054556:CDS 40.0%
ACTCCTCTTTCTAGATGGAA+CGG - chr4.1:87570272-87570291 MS.gene054556:intron 40.0%
AGTGGCAATACATTGACAGT+AGG + chr4.1:87572188-87572207 None:intergenic 40.0%
AGTTCAAATGGAGGAATGGT+TGG - chr4.1:87573185-87573204 MS.gene054556:CDS 40.0%
ATACCGTTCCATCTAGAAAG+AGG + chr4.1:87570278-87570297 None:intergenic 40.0%
ATGCTTCCTTATCCAAAACC+TGG + chr4.1:87571839-87571858 None:intergenic 40.0%
ATTTCGTTCTTTGTCTGGTG+AGG - chr4.1:87572955-87572974 MS.gene054556:intron 40.0%
CATGTCCTATGCATACCAAA+TGG - chr4.1:87573254-87573273 MS.gene054556:CDS 40.0%
CATGTTTGCAGTTCAAATGG+AGG - chr4.1:87573176-87573195 MS.gene054556:CDS 40.0%
CATTTGGTATGCATAGGACA+TGG + chr4.1:87573256-87573275 None:intergenic 40.0%
CCATAGTCGTATGATGATCT+AGG - chr4.1:87572894-87572913 MS.gene054556:intron 40.0%
CCTAGATCATCATACGACTA+TGG + chr4.1:87572897-87572916 None:intergenic 40.0%
GGATATTGCAATCAGTGAGT+TGG - chr4.1:87572101-87572120 MS.gene054556:CDS 40.0%
GGTCATGTTTGCAGTTCAAA+TGG - chr4.1:87573173-87573192 MS.gene054556:CDS 40.0%
TCTGAAAGATTGAAAGCTGG+AGG - chr4.1:87571171-87571190 MS.gene054556:intron 40.0%
TCTGTGTGCAAATAGGTTGT+GGG - chr4.1:87572386-87572405 MS.gene054556:intron 40.0%
TGAATACTACCTTGCAAGAG+AGG + chr4.1:87571197-87571216 None:intergenic 40.0%
TTCTGTGTGCAAATAGGTTG+TGG - chr4.1:87572385-87572404 MS.gene054556:intron 40.0%
TTGCAGTTCAAATGGAGGAA+TGG - chr4.1:87573181-87573200 MS.gene054556:CDS 40.0%
! GCAATCAGTGAGTTGGATTA+GGG - chr4.1:87572108-87572127 MS.gene054556:CDS 40.0%
! GTTGTTACTATCGTTTGGTG+TGG - chr4.1:87570963-87570982 MS.gene054556:intron 40.0%
! TGCAATCAGTGAGTTGGATT+AGG - chr4.1:87572107-87572126 MS.gene054556:CDS 40.0%
!! TTCTGTTGGTGTTGTGGAAA+AGG - chr4.1:87571932-87571951 MS.gene054556:intron 40.0%
!!! CGGACCTGTTGTTTTCTTTT+TGG - chr4.1:87571295-87571314 MS.gene054556:intron 40.0%
AAGCACTTGTGAGACTGTGT+AGG + chr4.1:87570609-87570628 None:intergenic 45.0%
ACGGTTCCAACATTCCATTC+TGG + chr4.1:87571005-87571024 None:intergenic 45.0%
AGAATGGAATGTTGGAACCG+TGG - chr4.1:87571004-87571023 MS.gene054556:intron 45.0%
AGCTGTCAATCCTTCAGGAT+TGG + chr4.1:87571124-87571143 None:intergenic 45.0%
ATCAGCAGCAGCTAGTGAAA+AGG - chr4.1:87572684-87572703 MS.gene054556:intron 45.0%
CTGCGAAATATGCCAACACT+TGG + chr4.1:87571059-87571078 None:intergenic 45.0%
CTTATGACATGTCCGTAAGC+TGG + chr4.1:87570582-87570601 None:intergenic 45.0%
GAAAGATGGGAACCAAGTGT+TGG - chr4.1:87571044-87571063 MS.gene054556:intron 45.0%
GAAGGATTGACAGCTGCTTA+TGG - chr4.1:87571129-87571148 MS.gene054556:intron 45.0%
GATCATCATACGACTATGGC+AGG + chr4.1:87572893-87572912 None:intergenic 45.0%
GTTCCATCTAGAAAGAGGAG+TGG + chr4.1:87570273-87570292 None:intergenic 45.0%
TAAGCAGCTGTCAATCCTTC+AGG + chr4.1:87571129-87571148 None:intergenic 45.0%
TCAGCAGCAGCTAGTGAAAA+GGG - chr4.1:87572685-87572704 MS.gene054556:intron 45.0%
TGCTTATGGCAAGTGGTCTT+TGG - chr4.1:87571143-87571162 MS.gene054556:intron 45.0%
TTGTACAATACCGGCACATG+TGG - chr4.1:87570732-87570751 MS.gene054556:intron 45.0%
TTTACCTCCTTAACTGCCGT+GGG + chr4.1:87572775-87572794 None:intergenic 45.0%
! AGCAACTTTAGTGGTGGTGA+CGG + chr4.1:87570090-87570109 None:intergenic 45.0%
!! ATCGTTTGGTGTGGCAGATT+TGG - chr4.1:87570972-87570991 MS.gene054556:intron 45.0%
!! CTGATGCTAGTTCTGCTATC+AGG + chr4.1:87572669-87572688 None:intergenic 45.0%
!! GCTTTAGAAGGTATGGGAGA+TGG - chr4.1:87570146-87570165 MS.gene054556:intron 45.0%
!!! TGAACGCCAGGTTTTGGATA+AGG - chr4.1:87571830-87571849 MS.gene054556:intron 45.0%
!!! TTTTTGGTTAGGCTGCTACG+AGG + chr4.1:87573027-87573046 None:intergenic 45.0%
!!! ATTAATAAAAACATATTTTA+CGG - chr4.1:87571270-87571289 MS.gene054556:intron 5.0%
!!! TAATTTTTATTATTTATTGT+TGG - chr4.1:87570925-87570944 MS.gene054556:intron 5.0%
ACATGGATCCTGCTTGCCTT+GGG + chr4.1:87573239-87573258 None:intergenic 50.0%
AGCTGTTGCTCACTTTCCCA+CGG - chr4.1:87572756-87572775 MS.gene054556:intron 50.0%
ATTCAGAGTCTCTTCCGCCA+TGG - chr4.1:87570058-87570077 MS.gene054556:CDS 50.0%
CAAAACCTGGCGTTCAAGAC+GGG + chr4.1:87571826-87571845 None:intergenic 50.0%
CACCACCACTAAAGTTGCTC+CGG - chr4.1:87570091-87570110 MS.gene054556:intron 50.0%
CAGCAGCAGCTAGTGAAAAG+GGG - chr4.1:87572686-87572705 MS.gene054556:intron 50.0%
CCAAAACCTGGCGTTCAAGA+CGG + chr4.1:87571827-87571846 None:intergenic 50.0%
CGTTCTTTGTCTGGTGAGGT+AGG - chr4.1:87572959-87572978 MS.gene054556:intron 50.0%
CTTGGAGAGTCCCCTATTGA+TGG - chr4.1:87571087-87571106 MS.gene054556:intron 50.0%
CTTTACCTCCTTAACTGCCG+TGG + chr4.1:87572776-87572795 None:intergenic 50.0%
GAACCGTGGCTTGAGAGTAA+AGG - chr4.1:87571018-87571037 MS.gene054556:intron 50.0%
TCACTTTCCCACGGCAGTTA+AGG - chr4.1:87572765-87572784 MS.gene054556:intron 50.0%
TCTGAGAAGGCTATTGCCCA+AGG - chr4.1:87573220-87573239 MS.gene054556:CDS 50.0%
TCTTTGTCTGGTGAGGTAGG+TGG - chr4.1:87572962-87572981 MS.gene054556:intron 50.0%
TGACAGCTGCTTATGGCAAG+TGG - chr4.1:87571136-87571155 MS.gene054556:intron 50.0%
TGGGAAAGTGAGCAACAGCT+CGG + chr4.1:87572756-87572775 None:intergenic 50.0%
! AAGCGCTGTTGCTGTAAGAG+TGG + chr4.1:87570024-87570043 None:intergenic 50.0%
!! AGGGGTTTCTGTTGGTGTTG+TGG - chr4.1:87571926-87571945 MS.gene054556:intron 50.0%
!! AGGTTGTGGGCTCTGACTTT+TGG - chr4.1:87572399-87572418 MS.gene054556:intron 50.0%
!! GGTTGTGGGCTCTGACTTTT+GGG - chr4.1:87572400-87572419 MS.gene054556:intron 50.0%
ATTGTCGGCGGTGGAAGAGT+TGG - chr4.1:87570119-87570138 MS.gene054556:intron 55.0%
CGCACACAAACGGTCTTCCA+TGG + chr4.1:87572728-87572747 None:intergenic 55.0%
CGCTGTTGCTGTAAGAGTGG+AGG + chr4.1:87570021-87570040 None:intergenic 55.0%
CGTCATGGAGGGGTTTCTGT+TGG - chr4.1:87571918-87571937 MS.gene054556:intron 55.0%
CTTTCCCACGGCAGTTAAGG+AGG - chr4.1:87572768-87572787 MS.gene054556:intron 55.0%
GACATGGATCCTGCTTGCCT+TGG + chr4.1:87573240-87573259 None:intergenic 55.0%
GGGAAAGTGAGCAACAGCTC+GGG + chr4.1:87572755-87572774 None:intergenic 55.0%
TCTTCCACCGCCGACAATGA+CGG + chr4.1:87570117-87570136 None:intergenic 55.0%
TTGTTGGAGCGCGTCATGGA+GGG - chr4.1:87571907-87571926 MS.gene054556:intron 55.0%
! ATGCTTGTTGGAGCGCGTCA+TGG - chr4.1:87571903-87571922 MS.gene054556:intron 55.0%
! CCGTCTTGAACGCCAGGTTT+TGG - chr4.1:87571824-87571843 MS.gene054556:intron 55.0%
! CTCGGGAGTACGCACACAAA+CGG + chr4.1:87572738-87572757 None:intergenic 55.0%
AGCTGGAGGCCTCTCTTGCA+AGG - chr4.1:87571185-87571204 MS.gene054556:intron 60.0%
CTTGTTGGAGCGCGTCATGG+AGG - chr4.1:87571906-87571925 MS.gene054556:intron 60.0%
GACGGCCGGAGCAACTTTAG+TGG + chr4.1:87570099-87570118 None:intergenic 60.0%
GGCCGGAGCAACTTTAGTGG+TGG + chr4.1:87570096-87570115 None:intergenic 60.0%
GGCTATTGCCCAAGGCAAGC+AGG - chr4.1:87573228-87573247 MS.gene054556:CDS 60.0%
GTCTGGTGAGGTAGGTGGCT+AGG - chr4.1:87572967-87572986 MS.gene054556:intron 60.0%
GTTGCTCCGGCCGTCATTGT+CGG - chr4.1:87570104-87570123 MS.gene054556:intron 60.0%
TCTGACCCGTCTTGAACGCC+AGG - chr4.1:87571818-87571837 MS.gene054556:intron 60.0%
TGTTGGAGCGCGTCATGGAG+GGG - chr4.1:87571908-87571927 MS.gene054556:intron 60.0%
! GGTGACGGTAGAAGCCATGG+CGG + chr4.1:87570075-87570094 None:intergenic 60.0%
!! GGTGGTGACGGTAGAAGCCA+TGG + chr4.1:87570078-87570097 None:intergenic 60.0%
CCACCGCCGACAATGACGGC+CGG + chr4.1:87570113-87570132 None:intergenic 70.0%
GCTCCGGCCGTCATTGTCGG+CGG - chr4.1:87570107-87570126 MS.gene054556:intron 70.0%
CCGGCCGTCATTGTCGGCGG+TGG - chr4.1:87570110-87570129 MS.gene054556:intron 75.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 87569993 87573300 87569993 ID=MS.gene054556
chr4.1 mRNA 87569993 87573300 87569993 ID=MS.gene054556.t1;Parent=MS.gene054556
chr4.1 exon 87573000 87573300 87573000 ID=MS.gene054556.t1.exon1;Parent=MS.gene054556.t1
chr4.1 CDS 87573000 87573300 87573000 ID=cds.MS.gene054556.t1;Parent=MS.gene054556.t1
chr4.1 exon 87572087 87572304 87572087 ID=MS.gene054556.t1.exon2;Parent=MS.gene054556.t1
chr4.1 CDS 87572087 87572304 87572087 ID=cds.MS.gene054556.t1;Parent=MS.gene054556.t1
chr4.1 exon 87571325 87571453 87571325 ID=MS.gene054556.t1.exon3;Parent=MS.gene054556.t1
chr4.1 CDS 87571325 87571453 87571325 ID=cds.MS.gene054556.t1;Parent=MS.gene054556.t1
chr4.1 exon 87570504 87570635 87570504 ID=MS.gene054556.t1.exon4;Parent=MS.gene054556.t1
chr4.1 CDS 87570504 87570635 87570504 ID=cds.MS.gene054556.t1;Parent=MS.gene054556.t1
chr4.1 exon 87569993 87570106 87569993 ID=MS.gene054556.t1.exon5;Parent=MS.gene054556.t1
chr4.1 CDS 87569993 87570106 87569993 ID=cds.MS.gene054556.t1;Parent=MS.gene054556.t1
Gene Sequence

>MS.gene054556

ATGTCTTTCTCTCTCTGTAGCTTTTCCTCCACTCTTACAGCAACAGCGCTTCCCAAGAATTTCAGATTCAGAGTCTCTTCCGCCATGGCTTCTACCGTCACCACCACTAAAGTTGCTCCGGCCGTCATTGTCGGCGGTGGAAGAGTTGGAAAAGCTTTAGAAGGTATGGGAGATGGTAAAGATCTTGTTGTGAAACGTGGTGATTCAATTCCCGTTGATTTTGAAGGTCCTATTTTGGTTTGTACTAGAAATGATGATCTTGACTCTGTTCTTCAAACCACTCCTCTTTCTAGATGGAACGGTATGTAAATGCTCATTTACTTCCATAAGTTTCACATTCTTTAGGCTTGTTTGGATAGAAACAACTTAATTAAGCCATTAGTCCCATAAGTATCACAATCTTTAGGCCTTTTTTGGGTAAACTTCTTAATTAAGCACTTAAAACATAATTGTTTATCATATAAGTGCTTACATGTAAGCTATTTCTATAGCAAAAGATAAAATAAAGTCAAATTGTTTTTATGCGTTGAAAGTTATAAGCTTTTTTCATAAGCAATCTTAGAGAGCTTTTGAAAATACGCTGAAACCAGCTTACGGACATGTCATAAGATTTCCTACACAGTCTCACAAGTGCTTATGCGAGTAGATAAGCTCAAATCTGCAATCTAAAGAGGCCTGAATCCATGATGTGTTACAAACTGTACACTTCAAATGGAAGTTCTATATGAGTGTTTGATATTTGTACAATACCGGCACATGTGGTTGTATAAAACCACTGTCACTTTTTCAAGTTAGTATCTGCGTTGATGTTTCTGTCTTTTCTCGTGTCAACACTTGACAAAACTACGAATTAGCACTTCTTAAATGTTGTTTATTATTTTTAATGACATAAAAGAGAGGGATTTTTGAGGAACTAATTATGGATTTAGTTTTAATTTTTATTATTTATTGTTGGAAAAAGTACTAATGAGTTGTTACTATCGTTTGGTGTGGCAGATTTGGTGTTTTTCCAGAATGGAATGTTGGAACCGTGGCTTGAGAGTAAAGGTTTGAAAGATGGGAACCAAGTGTTGGCATATTTCGCAGTGTCAAAACTTGGAGAGTCCCCTATTGATGGTAAGACTGATACCAATCCTGAAGGATTGACAGCTGCTTATGGCAAGTGGTCTTTGGCTGTTTCTGAAAGATTGAAAGCTGGAGGCCTCTCTTGCAAGGTAGTATTCATAAGAGTGATTAATCATATCTTGCCAGTAGCCAAGTTTTCTTGTTTTGGTTACATTAATAAAAACATATTTTACGGGACGGACCTGTTGTTTTCTTTTTGGGAGATATTAGTGTTTTAATTCTCACGTGTTATTGTATTTTTGGATTGCTTAACAATTTTTCTGGTTTGATTACTCGACTATCACCAGAGTTCAGTTGAATCAGAATCTTTAGATGAAAATCAGAAGGCTCATGATTAAATCTTAGTAAGTCCGATTTGGAAAATAAACGTGAATTATGAGTCATTCTATCTTCATTCAACGGTTTCGATATATACAGTGATGGCATGAAATGAGTGTTTTCTCTGACTGCTGAAAATCCATATCCATTAATTTTCTTCTATCTTCGATGTTGGTTTCCTAAGCTTGAAATAGTAACAAATCTTTAGCATGTGAGAAAGTCTAAGTTTATGAATTTCAAGCACGGAAAATTCCTAAGATTAGAGGGGTTTAATTTAACAGAAAAAGCTATTATTTAAAGAACTCGCATTTTATAAATGTTCATTTTTATCAGTGTTTGTTGAGAATTTTTTCATAATTAACTTGAAATAGATAAATCATGTTCTGACCCGTCTTGAACGCCAGGTTTTGGATAAGGAAGCATTTCAAAAGCAGATGTTAGAGAAGCTCATATGGATTTGTTCTGTCATGCTTGTTGGAGCGCGTCATGGAGGGGTTTCTGTTGGTGTTGTGGAAAAGGAATTCCACCTTGAAGTAAGTAAGCTTTCCTATTGCCATTTTCTCAAAGTTAATATGCACTTATTTTGTCAATCAACATTTGCTTGGAGTAAAGAAAATTTTATAGCATTCACATGCATGTATTGAAATTGTGTCGTTAAGATAGTTGGATATTGCAATCAGTGAGTTGGATTAGGGAAATTCAATGTTTATAATGAATTATTAAGCGGAGTATCTCATCTCAGAGTTACTCCTACTGTCAATGTATTGCCACTCTCTCTATATATACAAATATTGTGTCAGTGTTATCATGTATGGACAGATGCATGTAATTATGTACATTTTTCTTCTTTTGTCTAAAATTAAAAATTCAGTGTTCTTTATCATTTTAGTATTGCTATATGGGCCATATTTTTAATTTTTAAATGGTTTTTACTTTGTCCTACATCAATTTCTGTGTGCAAATAGGTTGTGGGCTCTGACTTTTGGGTGAAACCAAGTTAAAATTAAATATGTTCAAAGTTCAATCTATTTATTCAGTTGTTGGTATCTGTTTGAAGTGTTTGATCTTGTATATAATGAGCTTGTGTTAAAAATTGATTACCTATGTGTCTGGGATAATATCTAAAAACTTTAGAGAACACAGATGAACCATGTTGCAACTATGAAATTGAACATAATGAAAAACACAATCAGAACTGAACTAACTGATTTTGCACTTTCAGTTATGTAGCCTGATAGCAGAACTAGCATCAGCAGCAGCTAGTGAAAAGGGGTTAAAGTTTGAAGAAGCCATGGAAGACCGTTTGTGTGCGTACTCCCGAGCTGTTGCTCACTTTCCCACGGCAGTTAAGGAGGTAAAGATGAAACATTTATAATATTTGCAAATTGCAGACATAGATTCAATAAGTTGCATATAACCATACTGATAACATGAGAATAAATTAGAGGTGTGTACCTGCCATAGTCGTATGATGATCTAGGATCTTTAGTCGACACAAAGAAGAAAAGACTGTGAGAGAATTTCGTTCTTTGTCTGGTGAGGTAGGTGGCTAGGCCAGTCTTATATTTCACAGATGATGGTAGAGAGACCTCGTAGCAGCCTAACCAAAAAATAATCCAACTCATCACATTTCATTCATTAAATAAAGCCCAATTAGAATACATTCATAATTTAGTGCATTATTATAAGTAAGAATTTATAAAGTTCAAAAAAATATTAGTGTTTAATCAATATCTTGGTCATGTTTGCAGTTCAAATGGAGGAATGGTTGGTTTTATGCTCTTTCTGAGAAGGCTATTGCCCAAGGCAAGCAGGATCCATGTCCTATGCATACCAAATGGCTTAAAGAGTTGAAAATTGTATAA

Protein sequence

>MS.gene054556.t1

MSFSLCSFSSTLTATALPKNFRFRVSSAMASTVTTTKVAPAVIVGGGRVGKALEGMGDGKDLVVKRGDSIPVDFEGPILVCTRNDDLDSVLQTTPLSRWNDLVFFQNGMLEPWLESKGLKDGNQVLAYFAVSKLGESPIDGKTDTNPEGLTAAYGKWSLAVSERLKAGGLSCKVLDKEAFQKQMLEKLIWICSVMLVGARHGGVSVGVVEKEFHLELCSLIAELASAAASEKGLKFEEAMEDRLCAYSRAVAHFPTAVKEFKWRNGWFYALSEKAIAQGKQDPCPMHTKWLKELKIV