Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69441.t1 | XP_013462189.1 | 91.8 | 294 | 7 | 2 | 1 | 277 | 1 | 294 | 2.70E-153 | 551.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69441.t1 | Q9FXH7 | 42.1 | 347 | 118 | 16 | 1 | 271 | 1 | 340 | 8.8e-52 | 205.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69441.t1 | A0A072V2G0 | 91.8 | 294 | 7 | 2 | 1 | 277 | 1 | 294 | 2.0e-153 | 551.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene69441.t1 | TF | SRS |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050563 | MS.gene69441 | 0.818637 | 1.77E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69441.t1 | MTR_3g112510 | 90.476 | 294 | 11 | 2 | 1 | 277 | 1 | 294 | 0.0 | 518 |
| MS.gene69441.t1 | MTR_8g076620 | 53.191 | 235 | 85 | 8 | 57 | 271 | 97 | 326 | 3.12e-64 | 204 |
| MS.gene69441.t1 | MTR_5g021130 | 40.673 | 327 | 136 | 14 | 1 | 274 | 1 | 322 | 3.66e-54 | 178 |
| MS.gene69441.t1 | MTR_4g071110 | 50.350 | 143 | 63 | 4 | 81 | 221 | 14 | 150 | 1.03e-39 | 139 |
| MS.gene69441.t1 | MTR_1g023230 | 48.241 | 199 | 48 | 7 | 25 | 169 | 32 | 229 | 1.38e-37 | 133 |
| MS.gene69441.t1 | MTR_5g089750 | 43.293 | 164 | 50 | 5 | 84 | 212 | 249 | 404 | 5.39e-31 | 120 |
| MS.gene69441.t1 | MTR_3g014660 | 39.744 | 156 | 61 | 5 | 84 | 209 | 134 | 286 | 3.02e-27 | 108 |
| MS.gene69441.t1 | MTR_8g039110 | 34.951 | 206 | 89 | 6 | 84 | 250 | 124 | 323 | 4.33e-27 | 107 |
| MS.gene69441.t1 | MTR_0363s0040 | 75.556 | 45 | 11 | 0 | 84 | 128 | 124 | 168 | 2.93e-19 | 84.7 |
| MS.gene69441.t1 | MTR_0105s0070 | 63.636 | 33 | 12 | 0 | 86 | 118 | 44 | 76 | 2.15e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69441.t1 | AT1G19790 | 43.804 | 347 | 112 | 17 | 1 | 271 | 1 | 340 | 3.60e-69 | 218 |
| MS.gene69441.t1 | AT1G19790 | 43.804 | 347 | 112 | 17 | 1 | 271 | 1 | 340 | 3.60e-69 | 218 |
| MS.gene69441.t1 | AT1G75520 | 42.297 | 357 | 108 | 17 | 1 | 273 | 1 | 343 | 4.78e-63 | 202 |
| MS.gene69441.t1 | AT5G66350 | 51.131 | 221 | 61 | 10 | 84 | 271 | 120 | 326 | 6.53e-56 | 183 |
| MS.gene69441.t1 | AT5G66350 | 50.463 | 216 | 61 | 9 | 84 | 266 | 120 | 322 | 1.96e-54 | 179 |
| MS.gene69441.t1 | AT5G66350 | 50.698 | 215 | 60 | 9 | 84 | 265 | 120 | 321 | 2.48e-54 | 179 |
| MS.gene69441.t1 | AT3G51060 | 50.661 | 227 | 72 | 10 | 82 | 271 | 142 | 365 | 2.89e-53 | 177 |
| MS.gene69441.t1 | AT4G36260 | 52.830 | 159 | 48 | 4 | 78 | 210 | 88 | 245 | 7.72e-44 | 151 |
| MS.gene69441.t1 | AT2G18120 | 42.342 | 222 | 98 | 8 | 1 | 212 | 6 | 207 | 1.74e-43 | 147 |
| MS.gene69441.t1 | AT2G18120 | 41.818 | 220 | 100 | 8 | 1 | 212 | 6 | 205 | 6.33e-42 | 144 |
| MS.gene69441.t1 | AT2G21400 | 43.000 | 200 | 79 | 8 | 75 | 270 | 1 | 169 | 1.31e-41 | 141 |
| MS.gene69441.t1 | AT2G21400 | 43.216 | 199 | 78 | 8 | 76 | 270 | 1 | 168 | 2.97e-41 | 140 |
| MS.gene69441.t1 | AT2G21400 | 43.564 | 202 | 90 | 9 | 75 | 270 | 1 | 184 | 1.74e-40 | 139 |
| MS.gene69441.t1 | AT2G21400 | 44.388 | 196 | 85 | 9 | 81 | 270 | 6 | 183 | 3.22e-40 | 138 |
| MS.gene69441.t1 | AT5G12330 | 45.912 | 159 | 52 | 6 | 84 | 209 | 112 | 269 | 5.18e-30 | 115 |
| MS.gene69441.t1 | AT5G12330 | 45.912 | 159 | 52 | 6 | 84 | 209 | 112 | 269 | 5.18e-30 | 115 |
| MS.gene69441.t1 | AT5G12330 | 45.912 | 159 | 52 | 6 | 84 | 209 | 199 | 356 | 5.54e-30 | 117 |
| MS.gene69441.t1 | AT5G33210 | 65.278 | 72 | 23 | 2 | 82 | 151 | 15 | 86 | 4.05e-25 | 96.7 |
| MS.gene69441.t1 | AT5G33210 | 65.278 | 72 | 23 | 2 | 82 | 151 | 50 | 121 | 2.77e-24 | 96.7 |
| MS.gene69441.t1 | AT3G54430 | 37.500 | 136 | 77 | 3 | 80 | 209 | 37 | 170 | 4.96e-23 | 93.6 |
| MS.gene69441.t1 | AT5G12330 | 82.609 | 46 | 8 | 0 | 84 | 129 | 112 | 157 | 8.00e-21 | 88.6 |
Find 68 sgRNAs with CRISPR-Local
Find 102 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACACACCGTATTAATTAATT+AGG | 0.252373 | 3.3:+92852006 | None:intergenic |
| GCACCTATTGAAGGTTCTTC+TGG | 0.278915 | 3.3:-92852180 | MS.gene69441:CDS |
| TATTAATTAATTAGGATGTT+GGG | 0.323138 | 3.3:+92852014 | None:intergenic |
| GCAATACTGGTGTAAAGATT+TGG | 0.352201 | 3.3:+92852201 | None:intergenic |
| AGCTCCGCTCAATGCTTTCA+TGG | 0.372783 | 3.3:-92852061 | MS.gene69441:CDS |
| GATGAGTGTGAAAGAAGATT+TGG | 0.383103 | 3.3:-92853261 | MS.gene69441:CDS |
| ACCTTCAATAGGTGCAATAC+TGG | 0.385502 | 3.3:+92852188 | None:intergenic |
| TTGAACATTTACAATGCGTT+TGG | 0.402855 | 3.3:-92853321 | MS.gene69441:CDS |
| CCGTTTCGTCGTCGAGATCA+TGG | 0.410173 | 3.3:-92853054 | MS.gene69441:CDS |
| AGAGATGTTGTTGTCGTTCA+CGG | 0.410405 | 3.3:+92853085 | None:intergenic |
| CCACCAGAGGTGAGTTCTCC+AGG | 0.416959 | 3.3:-92852348 | MS.gene69441:CDS |
| ACAACAAAGGGTTAGAGATA+TGG | 0.425274 | 3.3:-92853356 | MS.gene69441:CDS |
| TGCTACTTAGGGTTGGAGTT+GGG | 0.432629 | 3.3:-92852378 | MS.gene69441:intron |
| GTATTAATTAATTAGGATGT+TGG | 0.434180 | 3.3:+92852013 | None:intergenic |
| ACCAGTATTGCACCTATTGA+AGG | 0.434447 | 3.3:-92852189 | MS.gene69441:CDS |
| AAACACATGTTAAGAGTACT+TGG | 0.440077 | 3.3:-92853125 | MS.gene69441:CDS |
| TACGCGCATTGCTCATGATC+TGG | 0.452659 | 3.3:+92852285 | None:intergenic |
| CTGCTACTTAGGGTTGGAGT+TGG | 0.452789 | 3.3:-92852379 | MS.gene69441:intron |
| ATTGAGCGGAGCTGAGTAAA+GGG | 0.455523 | 3.3:+92852071 | None:intergenic |
| AAAGGAATTCTCTATGATCA+AGG | 0.458943 | 3.3:-92852228 | MS.gene69441:CDS |
| CGTTCACGGCGTTTAGCAGC+GGG | 0.464082 | 3.3:+92853099 | None:intergenic |
| GTTCTCCAGGAGTAACGTTT+CGG | 0.464963 | 3.3:-92852335 | MS.gene69441:CDS |
| CTCAATGCTTTCATGGCAGC+TGG | 0.470851 | 3.3:-92852054 | MS.gene69441:CDS |
| TGAGCAATGCGCGTATCAAA+CGG | 0.474401 | 3.3:-92852277 | MS.gene69441:CDS |
| CCACCAGAAGAACCTTCAAT+AGG | 0.475713 | 3.3:+92852177 | None:intergenic |
| ATTTACAATGCGTTTGGAGC+GGG | 0.476042 | 3.3:-92853315 | MS.gene69441:CDS |
| ATTAATTAATTAGGATGTTG+GGG | 0.494474 | 3.3:+92852015 | None:intergenic |
| CCATGATCTCGACGACGAAA+CGG | 0.500595 | 3.3:+92853054 | None:intergenic |
| TGAGTACTGCAACAAATGGC+TGG | 0.507692 | 3.3:-92853474 | None:intergenic |
| ACACACCGAAACGTTACTCC+TGG | 0.517806 | 3.3:+92852330 | None:intergenic |
| AGGAGATCTATAACAACAAA+GGG | 0.518436 | 3.3:-92853368 | MS.gene69441:CDS |
| CCTATTGAAGGTTCTTCTGG+TGG | 0.522897 | 3.3:-92852177 | MS.gene69441:CDS |
| TATCAAACGGCTGTGAACAT+AGG | 0.523500 | 3.3:-92852264 | MS.gene69441:CDS |
| CATTGAGCGGAGCTGAGTAA+AGG | 0.525999 | 3.3:+92852070 | None:intergenic |
| TAGTGGAGGAATGAATTGTC+AGG | 0.528718 | 3.3:-92853226 | MS.gene69441:CDS |
| AAAGAAGATTTGGTATAATG+AGG | 0.534847 | 3.3:-92853251 | MS.gene69441:CDS |
| ATTGAAGGTTCTTCTGGTGG+AGG | 0.544276 | 3.3:-92852174 | MS.gene69441:CDS |
| CCTGGAGAACTCACCTCTGG+TGG | 0.547209 | 3.3:+92852348 | None:intergenic |
| AGTAAAGGGAAGGGTCGAAT+GGG | 0.547906 | 3.3:+92852085 | None:intergenic |
| GAGTAAAGGGAAGGGTCGAA+TGG | 0.551923 | 3.3:+92852084 | None:intergenic |
| GAACTTGTTGCAAGAGTCGA+GGG | 0.552988 | 3.3:-92853158 | MS.gene69441:CDS |
| TCGTTCACGGCGTTTAGCAG+CGG | 0.564542 | 3.3:+92853098 | None:intergenic |
| GTGTGTGAGAGTGAGTTCAT+TGG | 0.567712 | 3.3:-92852313 | MS.gene69441:CDS |
| CAAACGGCTGTGAACATAGG+AGG | 0.569957 | 3.3:-92852261 | MS.gene69441:CDS |
| ACTCCTGGAGAACTCACCTC+TGG | 0.575897 | 3.3:+92852345 | None:intergenic |
| ATCATGGAGACAATTACAAA+CGG | 0.577832 | 3.3:-92853038 | MS.gene69441:CDS |
| CGGCACACAGAAATTAATCA+AGG | 0.578142 | 3.3:-92853018 | MS.gene69441:intron |
| AGCGGAGCTGAGTAAAGGGA+AGG | 0.586546 | 3.3:+92852075 | None:intergenic |
| AGGGTCGAATGGGATACTGC+TGG | 0.587592 | 3.3:+92852095 | None:intergenic |
| CATTTACAATGCGTTTGGAG+CGG | 0.587822 | 3.3:-92853316 | MS.gene69441:CDS |
| TTTGGTATAATGAGGCGTAG+TGG | 0.591379 | 3.3:-92853243 | MS.gene69441:CDS |
| ATACTGGTGTAAAGATTTGG+AGG | 0.592879 | 3.3:+92852204 | None:intergenic |
| GAGGAGATCTATAACAACAA+AGG | 0.594462 | 3.3:-92853369 | MS.gene69441:CDS |
| AGAACTTGTTGCAAGAGTCG+AGG | 0.598909 | 3.3:-92853159 | MS.gene69441:CDS |
| AGAATTATTGTTAAGAAACG+AGG | 0.601425 | 3.3:-92853388 | MS.gene69441:CDS |
| GTCATGAAATCAAGTTGTTG+AGG | 0.608390 | 3.3:+92852141 | None:intergenic |
| TAAATGTTCAAGCTTTGTTG+TGG | 0.618391 | 3.3:+92853333 | None:intergenic |
| CTGGAGAACTCACCTCTGGT+GGG | 0.629708 | 3.3:+92852349 | None:intergenic |
| GGTATAATGAGGCGTAGTGG+AGG | 0.645542 | 3.3:-92853240 | MS.gene69441:CDS |
| TTAATTAATTAGGATGTTGG+GGG | 0.645627 | 3.3:+92852016 | None:intergenic |
| AACACATGTTAAGAGTACTT+GGG | 0.648062 | 3.3:-92853124 | MS.gene69441:CDS |
| AAACGGCTGTGAACATAGGA+GGG | 0.648226 | 3.3:-92852260 | MS.gene69441:CDS |
| GAGTACTGCAACAAATGGCT+GGG | 0.651398 | 3.3:-92853473 | None:intergenic |
| GCGGAGCTGAGTAAAGGGAA+GGG | 0.669522 | 3.3:+92852076 | None:intergenic |
| GTTGGGACAATTCCCACCAG+AGG | 0.679398 | 3.3:-92852361 | MS.gene69441:CDS |
| GCTGCCATGAAAGCATTGAG+CGG | 0.695869 | 3.3:+92852057 | None:intergenic |
| GTGAGAGTGAGTTCATTGGA+CGG | 0.712874 | 3.3:-92852309 | MS.gene69441:CDS |
| GGAATGAATTGTCAGGACTG+TGG | 0.748727 | 3.3:-92853219 | MS.gene69441:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTATAGTTATAATGA+TGG | - | chr3.3:92853007-92853026 | MS.gene69441:intron | 10.0% |
| !! | CTATACATACATATATATAT+AGG | - | chr3.3:92852579-92852598 | MS.gene69441:intron | 15.0% |
| !! | TTACAATAATTATATACCTG+TGG | + | chr3.3:92852525-92852544 | None:intergenic | 20.0% |
| !! | TTCATGATTGATGTATATAT+AGG | - | chr3.3:92852696-92852715 | MS.gene69441:intron | 20.0% |
| ! | AAAACAGTAACAAGTTATGA+TGG | + | chr3.3:92852880-92852899 | None:intergenic | 25.0% |
| ! | AAATCATCGTATACTAGTTA+AGG | + | chr3.3:92852819-92852838 | None:intergenic | 25.0% |
| ! | AATAATTATATACCTGTGGT+AGG | + | chr3.3:92852521-92852540 | None:intergenic | 25.0% |
| ! | AGAATTATTGTTAAGAAACG+AGG | - | chr3.3:92852091-92852110 | MS.gene69441:CDS | 25.0% |
| ! | ATAATTATATACCTGTGGTA+GGG | + | chr3.3:92852520-92852539 | None:intergenic | 25.0% |
| !! | AAAGAAGATTTGGTATAATG+AGG | - | chr3.3:92852228-92852247 | MS.gene69441:CDS | 25.0% |
| !! | AATGATGGAAATACTAATAG+AGG | - | chr3.3:92853022-92853041 | MS.gene69441:CDS | 25.0% |
| !! | GTATACGATGATTTTGAATA+TGG | - | chr3.3:92852825-92852844 | MS.gene69441:intron | 25.0% |
| !! | GTTTTACTTAAAAACAGTGA+TGG | + | chr3.3:92852934-92852953 | None:intergenic | 25.0% |
| AAAGGAATTCTCTATGATCA+AGG | - | chr3.3:92853251-92853270 | MS.gene69441:CDS | 30.0% | |
| AGGAGATCTATAACAACAAA+GGG | - | chr3.3:92852111-92852130 | MS.gene69441:CDS | 30.0% | |
| AGGTCTAGTCATATATATAG+AGG | + | chr3.3:92852799-92852818 | None:intergenic | 30.0% | |
| ATATGTATGTATAGCTAGCT+AGG | + | chr3.3:92852573-92852592 | None:intergenic | 30.0% | |
| ATCATGGAGACAATTACAAA+CGG | - | chr3.3:92852441-92852460 | MS.gene69441:intron | 30.0% | |
| GTATAGCTGAAAATTCTTCA+TGG | + | chr3.3:92852723-92852742 | None:intergenic | 30.0% | |
| TATGTATGTATAGCTAGCTA+GGG | + | chr3.3:92852572-92852591 | None:intergenic | 30.0% | |
| TGACGAACTCATCAAATTAT+TGG | - | chr3.3:92852954-92852973 | MS.gene69441:intron | 30.0% | |
| TTGAACATTTACAATGCGTT+TGG | - | chr3.3:92852158-92852177 | MS.gene69441:CDS | 30.0% | |
| ! | TTAAAAACAGTGATGGAGAA+TGG | + | chr3.3:92852927-92852946 | None:intergenic | 30.0% |
| !! | AAACACATGTTAAGAGTACT+TGG | - | chr3.3:92852354-92852373 | MS.gene69441:CDS | 30.0% |
| !! | AACACATGTTAAGAGTACTT+GGG | - | chr3.3:92852355-92852374 | MS.gene69441:CDS | 30.0% |
| !! | AATTTTCTTGACTGCTACTT+AGG | - | chr3.3:92853089-92853108 | MS.gene69441:CDS | 30.0% |
| !! | ATTTTCTTGACTGCTACTTA+GGG | - | chr3.3:92853090-92853109 | MS.gene69441:CDS | 30.0% |
| !! | GTTATTTTGTCTAGGTAGAA+AGG | - | chr3.3:92852028-92852047 | MS.gene69441:CDS | 30.0% |
| !! | TAAATGTTCAAGCTTTGTTG+TGG | + | chr3.3:92852149-92852168 | None:intergenic | 30.0% |
| !!! | CAATGCATTTTTTCATTAGC+AGG | + | chr3.3:92852759-92852778 | None:intergenic | 30.0% |
| AATGGAAAAGAAGATAGCGA+GGG | + | chr3.3:92852909-92852928 | None:intergenic | 35.0% | |
| ACAACAAAGGGTTAGAGATA+TGG | - | chr3.3:92852123-92852142 | MS.gene69441:CDS | 35.0% | |
| ATACTGGTGTAAAGATTTGG+AGG | + | chr3.3:92853278-92853297 | None:intergenic | 35.0% | |
| GAGGAGATCTATAACAACAA+AGG | - | chr3.3:92852110-92852129 | MS.gene69441:CDS | 35.0% | |
| GATGAGTGTGAAAGAAGATT+TGG | - | chr3.3:92852218-92852237 | MS.gene69441:CDS | 35.0% | |
| GCAATACTGGTGTAAAGATT+TGG | + | chr3.3:92853281-92853300 | None:intergenic | 35.0% | |
| ! | GTCATGAAATCAAGTTGTTG+AGG | + | chr3.3:92853341-92853360 | None:intergenic | 35.0% |
| !! | CAAGTTATGATGGATAACCA+TGG | + | chr3.3:92852870-92852889 | None:intergenic | 35.0% |
| ACCAGTATTGCACCTATTGA+AGG | - | chr3.3:92853290-92853309 | MS.gene69441:CDS | 40.0% | |
| ACCTTCAATAGGTGCAATAC+TGG | + | chr3.3:92853294-92853313 | None:intergenic | 40.0% | |
| AGAGATGTTGTTGTCGTTCA+CGG | + | chr3.3:92852397-92852416 | None:intergenic | 40.0% | |
| CATTTACAATGCGTTTGGAG+CGG | - | chr3.3:92852163-92852182 | MS.gene69441:CDS | 40.0% | |
| CGGCACACAGAAATTAATCA+AGG | - | chr3.3:92852461-92852480 | MS.gene69441:intron | 40.0% | |
| GAATGGAAAAGAAGATAGCG+AGG | + | chr3.3:92852910-92852929 | None:intergenic | 40.0% | |
| TAGTGGAGGAATGAATTGTC+AGG | - | chr3.3:92852253-92852272 | MS.gene69441:CDS | 40.0% | |
| TATATACCTGTGGTAGGGAT+GGG | + | chr3.3:92852515-92852534 | None:intergenic | 40.0% | |
| TATCAAACGGCTGTGAACAT+AGG | - | chr3.3:92853215-92853234 | MS.gene69441:CDS | 40.0% | |
| TTATATACCTGTGGTAGGGA+TGG | + | chr3.3:92852516-92852535 | None:intergenic | 40.0% | |
| TTTGAATATGGAACCCCACT+TGG | - | chr3.3:92852837-92852856 | MS.gene69441:intron | 40.0% | |
| TTTGGTATAATGAGGCGTAG+TGG | - | chr3.3:92852236-92852255 | MS.gene69441:CDS | 40.0% | |
| ! | ATTTACAATGCGTTTGGAGC+GGG | - | chr3.3:92852164-92852183 | MS.gene69441:CDS | 40.0% |
| !! | ATAGGAGGGCATGTTTTCAA+AGG | - | chr3.3:92853233-92853252 | MS.gene69441:CDS | 40.0% |
| !! | ATGGCTGGGTTATTTTGTCT+AGG | - | chr3.3:92852020-92852039 | MS.gene69441:CDS | 40.0% |
| AAACGGCTGTGAACATAGGA+GGG | - | chr3.3:92853219-92853238 | MS.gene69441:CDS | 45.0% | |
| AACCATGGATCCAATCCAAG+TGG | + | chr3.3:92852855-92852874 | None:intergenic | 45.0% | |
| ACCATGGATCCAATCCAAGT+GGG | + | chr3.3:92852854-92852873 | None:intergenic | 45.0% | |
| AGTAAAGGGAAGGGTCGAAT+GGG | + | chr3.3:92853397-92853416 | None:intergenic | 45.0% | |
| ATATGGAACCCCACTTGGAT+TGG | - | chr3.3:92852842-92852861 | MS.gene69441:intron | 45.0% | |
| ATTGAAGGTTCTTCTGGTGG+AGG | - | chr3.3:92853305-92853324 | MS.gene69441:CDS | 45.0% | |
| ATTGAGCGGAGCTGAGTAAA+GGG | + | chr3.3:92853411-92853430 | None:intergenic | 45.0% | |
| CCACCAGAAGAACCTTCAAT+AGG | + | chr3.3:92853305-92853324 | None:intergenic | 45.0% | |
| CCTATTGAAGGTTCTTCTGG+TGG | - | chr3.3:92853302-92853321 | MS.gene69441:CDS | 45.0% | |
| GCACCTATTGAAGGTTCTTC+TGG | - | chr3.3:92853299-92853318 | MS.gene69441:CDS | 45.0% | |
| GGAATGAATTGTCAGGACTG+TGG | - | chr3.3:92852260-92852279 | MS.gene69441:CDS | 45.0% | |
| GTGAGAGTGAGTTCATTGGA+CGG | - | chr3.3:92853170-92853189 | MS.gene69441:CDS | 45.0% | |
| GTGTGTGAGAGTGAGTTCAT+TGG | - | chr3.3:92853166-92853185 | MS.gene69441:CDS | 45.0% | |
| GTTCTCCAGGAGTAACGTTT+CGG | - | chr3.3:92853144-92853163 | MS.gene69441:CDS | 45.0% | |
| TGAGCAATGCGCGTATCAAA+CGG | - | chr3.3:92853202-92853221 | MS.gene69441:CDS | 45.0% | |
| ! | TCTTGACTGCTACTTAGGGT+TGG | - | chr3.3:92853094-92853113 | MS.gene69441:CDS | 45.0% |
| ! | TGCTACTTAGGGTTGGAGTT+GGG | - | chr3.3:92853101-92853120 | MS.gene69441:CDS | 45.0% |
| !! | AGAACTTGTTGCAAGAGTCG+AGG | - | chr3.3:92852320-92852339 | MS.gene69441:CDS | 45.0% |
| !! | GAACTTGTTGCAAGAGTCGA+GGG | - | chr3.3:92852321-92852340 | MS.gene69441:CDS | 45.0% |
| ACACACCGAAACGTTACTCC+TGG | + | chr3.3:92853152-92853171 | None:intergenic | 50.0% | |
| AGCTCCGCTCAATGCTTTCA+TGG | - | chr3.3:92853418-92853437 | MS.gene69441:CDS | 50.0% | |
| CAAACGGCTGTGAACATAGG+AGG | - | chr3.3:92853218-92853237 | MS.gene69441:CDS | 50.0% | |
| CATTGAGCGGAGCTGAGTAA+AGG | + | chr3.3:92853412-92853431 | None:intergenic | 50.0% | |
| CCATGATCTCGACGACGAAA+CGG | + | chr3.3:92852428-92852447 | None:intergenic | 50.0% | |
| CCATGGATCCAATCCAAGTG+GGG | + | chr3.3:92852853-92852872 | None:intergenic | 50.0% | |
| CTCAATGCTTTCATGGCAGC+TGG | - | chr3.3:92853425-92853444 | MS.gene69441:CDS | 50.0% | |
| GAGTAAAGGGAAGGGTCGAA+TGG | + | chr3.3:92853398-92853417 | None:intergenic | 50.0% | |
| GGTATAATGAGGCGTAGTGG+AGG | - | chr3.3:92852239-92852258 | MS.gene69441:CDS | 50.0% | |
| TACGCGCATTGCTCATGATC+TGG | + | chr3.3:92853197-92853216 | None:intergenic | 50.0% | |
| ! | CTGCTACTTAGGGTTGGAGT+TGG | - | chr3.3:92853100-92853119 | MS.gene69441:CDS | 50.0% |
| !! | GCTGCCATGAAAGCATTGAG+CGG | + | chr3.3:92853425-92853444 | None:intergenic | 50.0% |
| ACTCCTGGAGAACTCACCTC+TGG | + | chr3.3:92853137-92853156 | None:intergenic | 55.0% | |
| AGCGGAGCTGAGTAAAGGGA+AGG | + | chr3.3:92853407-92853426 | None:intergenic | 55.0% | |
| AGGGTCGAATGGGATACTGC+TGG | + | chr3.3:92853387-92853406 | None:intergenic | 55.0% | |
| ATACCTGTGGTAGGGATGGG+TGG | + | chr3.3:92852512-92852531 | None:intergenic | 55.0% | |
| CCGTTTCGTCGTCGAGATCA+TGG | - | chr3.3:92852425-92852444 | MS.gene69441:intron | 55.0% | |
| CTGGAGAACTCACCTCTGGT+GGG | + | chr3.3:92853133-92853152 | None:intergenic | 55.0% | |
| GCGGAGCTGAGTAAAGGGAA+GGG | + | chr3.3:92853406-92853425 | None:intergenic | 55.0% | |
| GTTGGGACAATTCCCACCAG+AGG | - | chr3.3:92853118-92853137 | MS.gene69441:CDS | 55.0% | |
| TCGTTCACGGCGTTTAGCAG+CGG | + | chr3.3:92852384-92852403 | None:intergenic | 55.0% | |
| TGGTAGGGATGGGTGGTTGA+GGG | + | chr3.3:92852505-92852524 | None:intergenic | 55.0% | |
| TGGTTGAGGGCAAGGAAGAG+AGG | + | chr3.3:92852492-92852511 | None:intergenic | 55.0% | |
| ! | CCCCACTTGGATTGGATCCA+TGG | - | chr3.3:92852850-92852869 | MS.gene69441:intron | 55.0% |
| CAACCACCCATCCCTACCAC+AGG | - | chr3.3:92852506-92852525 | MS.gene69441:intron | 60.0% | |
| CCACCAGAGGTGAGTTCTCC+AGG | - | chr3.3:92853131-92853150 | MS.gene69441:CDS | 60.0% | |
| CCTGGAGAACTCACCTCTGG+TGG | + | chr3.3:92853134-92853153 | None:intergenic | 60.0% | |
| CGTTCACGGCGTTTAGCAGC+GGG | + | chr3.3:92852383-92852402 | None:intergenic | 60.0% | |
| GTGGTAGGGATGGGTGGTTG+AGG | + | chr3.3:92852506-92852525 | None:intergenic | 60.0% | |
| GGGATGGGTGGTTGAGGGCA+AGG | + | chr3.3:92852500-92852519 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 92852020 | 92853481 | 92852020 | ID=MS.gene69441 |
| chr3.3 | mRNA | 92852020 | 92853481 | 92852020 | ID=MS.gene69441.t1;Parent=MS.gene69441 |
| chr3.3 | exon | 92853019 | 92853481 | 92853019 | ID=MS.gene69441.t1.exon1;Parent=MS.gene69441.t1 |
| chr3.3 | CDS | 92853019 | 92853481 | 92853019 | ID=cds.MS.gene69441.t1;Parent=MS.gene69441.t1 |
| chr3.3 | exon | 92852020 | 92852390 | 92852020 | ID=MS.gene69441.t1.exon2;Parent=MS.gene69441.t1 |
| chr3.3 | CDS | 92852020 | 92852390 | 92852020 | ID=cds.MS.gene69441.t1;Parent=MS.gene69441.t1 |
| Gene Sequence |
| Protein sequence |
