AlfalfaGEDB | MS.gene050563

M. sativa cultivar XinJiangDaYe / MS.gene050563

KEGG: -
GO: -
PFAM: PF04852.15

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050563.t1	XP_013450572.1	97.6	170	3	1	1	169	1	170	2.40E-91	344.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050563.t1	Q9LW68	75.6	131	26	3	23	150	44	171	1.9e-52	206.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050563.t1	I3T2Z0	97.6	170	3	1	1	169	1	170	1.7e-91	344.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050298	MS.gene050563	0.814347	1.61E-51	-1.69E-46
MS.gene050563	MS.gene052142	0.835395	1.72E-56	-1.69E-46
MS.gene050563	MS.gene052698	0.800552	1.37E-48	-1.69E-46
MS.gene050563	MS.gene053383	0.898841	3.57E-77	-1.69E-46
MS.gene050563	MS.gene05456	0.851236	1.01E-60	-1.69E-46
MS.gene050563	MS.gene055359	0.850817	1.33E-60	-1.69E-46
MS.gene050563	MS.gene058918	0.810682	1.02E-50	-1.69E-46
MS.gene050563	MS.gene059006	0.824062	9.89E-54	-1.69E-46
MS.gene050563	MS.gene059768	0.850615	1.51E-60	-1.69E-46
MS.gene050563	MS.gene060691	0.827617	1.42E-54	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050563.t1	MTR_7g115700	97.647	170	3	1	1	169	1	170	3.97e-124	346
MS.gene050563.t1	MTR_5g072510	72.263	137	31	4	26	158	36	169	1.07e-67	205
MS.gene050563.t1	MTR_4g094428	68.571	140	37	4	25	160	44	180	2.87e-64	197
MS.gene050563.t1	MTR_1g442860	73.438	128	28	3	27	151	65	189	4.07e-64	196
MS.gene050563.t1	MTR_2g016110	71.318	129	31	3	25	150	33	158	9.05e-63	191
MS.gene050563.t1	MTR_1g080210	73.288	146	33	3	27	169	40	182	2.10e-62	191
MS.gene050563.t1	MTR_2g092950	65.306	147	45	3	16	159	12	155	4.38e-62	189
MS.gene050563.t1	MTR_2g076400	68.217	129	35	3	25	150	31	156	5.15e-60	184
MS.gene050563.t1	MTR_1g075990	70.213	141	36	3	19	156	45	182	9.17e-60	184
MS.gene050563.t1	MTR_4g079930	66.667	129	37	3	25	150	27	152	1.79e-59	183

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050563.t1	AT5G58500	70.423	142	36	4	26	163	18	157	1.64e-67	203
MS.gene050563.t1	AT1G07090	65.493	142	43	3	26	164	30	168	1.49e-64	196
MS.gene050563.t1	AT5G28490	76.471	136	26	3	27	159	25	157	1.61e-62	191
MS.gene050563.t1	AT3G04510	70.714	140	35	3	27	163	33	169	8.56e-60	184
MS.gene050563.t1	AT2G42610	67.969	128	35	3	26	150	24	148	2.55e-59	182
MS.gene050563.t1	AT2G42610	67.969	128	35	3	26	150	24	148	2.55e-59	182
MS.gene050563.t1	AT2G31160	75.556	135	26	4	27	157	54	185	4.54e-58	181
MS.gene050563.t1	AT4G18610	65.116	129	38	3	26	150	36	161	2.18e-57	178
MS.gene050563.t1	AT3G23290	75.573	131	26	3	23	150	44	171	2.69e-57	178
MS.gene050563.t1	AT1G78815	63.566	129	41	3	25	150	38	163	2.96e-55	173

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Find 50 sgRNAs with CRISPR-Local

Find 53 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATCCAACTTGTCCTTTCTT+TGG	0.215866	7.3:-1901782	MS.gene050563:CDS
AATGGAAGTGATTCAAGTGG+TGG	0.625867	7.3:-1901971	MS.gene050563:CDS
ACAAACCCTAGCAGCTACAA+TGG	0.562580	7.3:-1901989	MS.gene050563:CDS
ACAGGTACGAGAGCCAAAAG+AGG	0.613687	7.3:-1901937	MS.gene050563:CDS
AGAGCCAAAAGAGGAGGGAC+TGG	0.543509	7.3:-1901928	MS.gene050563:CDS
AGAGGACAAGCACATGGAGA+TGG	0.557220	7.3:+1901746	None:intergenic
ATCCAACTTGTCCTTTCTTT+GGG	0.324334	7.3:-1901781	MS.gene050563:CDS
ATCCCAAAGAAAGGACAAGT+TGG	0.587746	7.3:+1901779	None:intergenic
ATGTGCTTGTCCTCTCCGTC+AGG	0.459665	7.3:-1901738	MS.gene050563:CDS
ATTGAAGCAGAAAGTGGTAC+TGG	0.535622	7.3:+1901872	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCACTACCTTGATCAATTT+GGG	-	chr7.3:1901719-1901738	MS.gene050563:CDS	30.0%
AATCCAACTTGTCCTTTCTT+TGG	-	chr7.3:1901757-1901776	MS.gene050563:CDS	35.0%
ATCCAACTTGTCCTTTCTTT+GGG	-	chr7.3:1901758-1901777	MS.gene050563:CDS	35.0%
CAAATTGATCAAGGTAGTGA+AGG	+	chr7.3:1901720-1901739	None:intergenic	35.0%
CTTCACTACCTTGATCAATT+TGG	-	chr7.3:1901718-1901737	MS.gene050563:CDS	35.0%
GAGTTAGCTACCATAAGAAA+AGG	-	chr7.3:1901965-1901984	MS.gene050563:CDS	35.0%
GCTTATGATCAAGAGATTCA+TGG	-	chr7.3:1901865-1901884	MS.gene050563:CDS	35.0%
TACAATGGAAGTGATTCAAG+TGG	-	chr7.3:1901565-1901584	MS.gene050563:CDS	35.0%
TAGTCTTCCCAAATTGATCA+AGG	+	chr7.3:1901729-1901748	None:intergenic	35.0%
TATGATCAAGAGATTCATGG+TGG	-	chr7.3:1901868-1901887	MS.gene050563:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	1901526	1902035	1901526	ID=MS.gene050563
chr7.3	mRNA	1901526	1902035	1901526	ID=MS.gene050563.t1;Parent=MS.gene050563
chr7.3	exon	1901526	1902035	1901526	ID=MS.gene050563.t1.exon1;Parent=MS.gene050563.t1
chr7.3	CDS	1901526	1902035	1901526	ID=cds.MS.gene050563.t1;Parent=MS.gene050563.t1

Gene Sequence

>MS.gene050563

ATGGCATTGGTTTCAGCTGAATCAACAAACCCTAGCAGCTACAATGGAAGTGATTCAAGTGGTGGCAACAAGATCAACAGGTACGAGAGCCAAAAGAGGAGGGACTGGAACACATTCTGCCAGTACTTAAGAAACCATCGACCAGTACCACTTTCTGCTTCAATGTGCAATGGAACTCATGTTCTTGAATTCCTTCACTACCTTGATCAATTTGGGAAGACTAAGGTTCACAATCCAACTTGTCCTTTCTTTGGGATGCCAAACCCTCCATCTCCATGTGCTTGTCCTCTCCGTCAGGCTTGGGGTAGCCTTGATGCTCTCATCGGTCGCCTCCGCGCTGCTTATGATCAAGAGATTCATGGTGGAAGTAACCCTTTTGGTGATGGCGCTGTTAGGTTTTACTTGCGTGATGTTCGTGATTTTCAGTCAAAGGCTAGAGGAGTTAGCTACCATAAGAAAAGGAAGAGACCTAACCGCAACATCACAACTACTTCTCAATCATCCTCTTGA

Protein sequence

>MS.gene050563.t1

MALVSAESTNPSSYNGSDSSGGNKINRYESQKRRDWNTFCQYLRNHRPVPLSASMCNGTHVLEFLHYLDQFGKTKVHNPTCPFFGMPNPPSPCACPLRQAWGSLDALIGRLRAAYDQEIHGGSNPFGDGAVRFYLRDVRDFQSKARGVSYHKKRKRPNRNITTTSQSSS