Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69532.t1 | XP_003599808.2 | 76 | 279 | 61 | 3 | 1 | 274 | 1 | 278 | 3.80E-107 | 397.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69532.t1 | Q41160 | 51.7 | 271 | 123 | 6 | 3 | 270 | 2 | 267 | 7.9e-61 | 235.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69532.t1 | G7IXH3 | 76.0 | 279 | 61 | 3 | 1 | 274 | 1 | 278 | 2.7e-107 | 397.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene060087 | MS.gene69532 | 0.813971 | 1.95E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69532.t1 | MTR_3g047140 | 75.986 | 279 | 61 | 3 | 1 | 274 | 1 | 278 | 4.35e-145 | 408 |
| MS.gene69532.t1 | MTR_0163s0020 | 64.982 | 277 | 91 | 2 | 1 | 273 | 2 | 276 | 3.44e-111 | 322 |
| MS.gene69532.t1 | MTR_0684s0020 | 64.982 | 277 | 91 | 2 | 1 | 273 | 1 | 275 | 3.55e-111 | 322 |
| MS.gene69532.t1 | MTR_3g054170 | 53.600 | 250 | 111 | 3 | 9 | 257 | 9 | 254 | 3.01e-81 | 245 |
| MS.gene69532.t1 | MTR_3g054180 | 53.175 | 252 | 111 | 4 | 9 | 257 | 13 | 260 | 4.49e-79 | 240 |
| MS.gene69532.t1 | MTR_1g090973 | 49.810 | 263 | 123 | 5 | 1 | 257 | 1 | 260 | 7.71e-77 | 234 |
| MS.gene69532.t1 | MTR_3g054200 | 50.800 | 250 | 118 | 3 | 9 | 257 | 9 | 254 | 5.19e-74 | 227 |
| MS.gene69532.t1 | MTR_1g090943 | 48.302 | 265 | 128 | 7 | 10 | 271 | 15 | 273 | 3.35e-68 | 213 |
| MS.gene69532.t1 | MTR_1g090960 | 45.000 | 280 | 104 | 8 | 1 | 269 | 1 | 241 | 4.26e-62 | 196 |
| MS.gene69532.t1 | MTR_3g027280 | 47.887 | 284 | 124 | 14 | 1 | 267 | 1 | 277 | 6.47e-60 | 192 |
| MS.gene69532.t1 | MTR_1g090937 | 42.553 | 282 | 135 | 13 | 1 | 267 | 1 | 270 | 1.04e-49 | 165 |
| MS.gene69532.t1 | MTR_1g090957 | 44.643 | 280 | 121 | 15 | 1 | 264 | 1 | 262 | 6.56e-49 | 163 |
| MS.gene69532.t1 | MTR_1g090930 | 40.972 | 288 | 139 | 11 | 1 | 269 | 1 | 276 | 3.23e-47 | 159 |
| MS.gene69532.t1 | MTR_4g023810 | 41.736 | 242 | 129 | 7 | 26 | 263 | 27 | 260 | 5.81e-44 | 150 |
| MS.gene69532.t1 | MTR_8g023510 | 40.755 | 265 | 143 | 10 | 1 | 257 | 1 | 259 | 4.44e-42 | 145 |
| MS.gene69532.t1 | MTR_8g068040 | 38.996 | 259 | 136 | 10 | 10 | 255 | 10 | 259 | 1.55e-41 | 144 |
| MS.gene69532.t1 | MTR_8g068030 | 37.729 | 273 | 142 | 11 | 1 | 255 | 1 | 263 | 2.27e-40 | 141 |
| MS.gene69532.t1 | MTR_8g068050 | 37.736 | 265 | 140 | 8 | 10 | 259 | 21 | 275 | 1.66e-37 | 140 |
| MS.gene69532.t1 | MTR_4g093080 | 34.601 | 263 | 154 | 8 | 8 | 258 | 4 | 260 | 8.24e-34 | 130 |
| MS.gene69532.t1 | MTR_5g031160 | 37.200 | 250 | 135 | 8 | 26 | 257 | 42 | 287 | 9.95e-34 | 124 |
| MS.gene69532.t1 | MTR_5g031090 | 34.413 | 247 | 140 | 8 | 30 | 257 | 32 | 275 | 3.29e-33 | 122 |
| MS.gene69532.t1 | MTR_8g067980 | 37.083 | 240 | 128 | 11 | 32 | 255 | 25 | 257 | 1.65e-32 | 120 |
| MS.gene69532.t1 | MTR_5g031120 | 36.992 | 246 | 132 | 8 | 31 | 257 | 38 | 279 | 2.03e-32 | 120 |
| MS.gene69532.t1 | MTR_8g067940 | 35.849 | 265 | 145 | 10 | 11 | 255 | 20 | 279 | 2.21e-32 | 120 |
| MS.gene69532.t1 | MTR_5g031030 | 34.568 | 243 | 141 | 8 | 30 | 257 | 35 | 274 | 4.63e-32 | 119 |
| MS.gene69532.t1 | MTR_5g031140 | 38.115 | 244 | 131 | 9 | 31 | 257 | 46 | 286 | 1.01e-31 | 119 |
| MS.gene69532.t1 | MTR_8g067990 | 37.344 | 241 | 126 | 12 | 32 | 255 | 25 | 257 | 3.71e-31 | 117 |
| MS.gene69532.t1 | MTR_4g056320 | 35.612 | 278 | 128 | 12 | 2 | 270 | 6 | 241 | 2.16e-30 | 114 |
| MS.gene69532.t1 | MTR_5g031100 | 35.772 | 246 | 134 | 9 | 31 | 257 | 38 | 278 | 9.28e-30 | 113 |
| MS.gene69532.t1 | MTR_8g067735 | 32.103 | 271 | 165 | 9 | 9 | 267 | 25 | 288 | 2.23e-29 | 117 |
| MS.gene69532.t1 | MTR_7g115740 | 33.906 | 233 | 125 | 11 | 46 | 258 | 38 | 261 | 5.18e-29 | 116 |
| MS.gene69532.t1 | MTR_4g093110 | 34.799 | 273 | 133 | 13 | 10 | 257 | 12 | 264 | 5.54e-28 | 113 |
| MS.gene69532.t1 | MTR_7g116130 | 33.712 | 264 | 140 | 13 | 19 | 260 | 14 | 264 | 3.20e-27 | 110 |
| MS.gene69532.t1 | MTR_4g093140 | 33.456 | 272 | 138 | 11 | 10 | 257 | 12 | 264 | 5.37e-27 | 110 |
| MS.gene69532.t1 | MTR_4g093040 | 32.794 | 247 | 144 | 9 | 11 | 240 | 13 | 254 | 8.05e-27 | 109 |
| MS.gene69532.t1 | MTR_8g067960 | 37.168 | 226 | 120 | 10 | 46 | 257 | 24 | 241 | 9.13e-26 | 102 |
| MS.gene69532.t1 | MTR_4g093040 | 39.306 | 173 | 88 | 7 | 82 | 240 | 3 | 172 | 2.45e-25 | 105 |
| MS.gene69532.t1 | MTR_1g014240 | 35.407 | 209 | 118 | 6 | 71 | 265 | 78 | 283 | 5.14e-25 | 104 |
| MS.gene69532.t1 | MTR_4g093070 | 34.328 | 268 | 143 | 9 | 10 | 257 | 12 | 266 | 2.40e-23 | 99.8 |
| MS.gene69532.t1 | MTR_8g067930 | 29.889 | 271 | 171 | 8 | 9 | 267 | 6 | 269 | 3.31e-23 | 99.4 |
| MS.gene69532.t1 | MTR_8g067630 | 33.040 | 227 | 131 | 8 | 31 | 243 | 30 | 249 | 3.54e-23 | 99.0 |
| MS.gene69532.t1 | MTR_3g463370 | 31.734 | 271 | 129 | 9 | 10 | 269 | 9 | 234 | 3.89e-23 | 95.1 |
| MS.gene69532.t1 | MTR_8g067720 | 30.153 | 262 | 160 | 9 | 11 | 260 | 10 | 260 | 1.04e-22 | 97.8 |
| MS.gene69532.t1 | MTR_8g067690 | 29.412 | 238 | 154 | 6 | 31 | 257 | 60 | 294 | 2.29e-20 | 90.9 |
| MS.gene69532.t1 | MTR_4g093050 | 30.980 | 255 | 155 | 10 | 16 | 253 | 12 | 262 | 2.95e-19 | 87.8 |
| MS.gene69532.t1 | MTR_5g025020 | 33.690 | 187 | 103 | 7 | 72 | 240 | 88 | 271 | 2.31e-18 | 85.1 |
| MS.gene69532.t1 | MTR_7g063010 | 30.544 | 239 | 127 | 11 | 42 | 254 | 32 | 257 | 3.73e-16 | 78.6 |
| MS.gene69532.t1 | MTR_1g048360 | 28.458 | 253 | 162 | 6 | 15 | 256 | 17 | 261 | 7.45e-16 | 77.8 |
| MS.gene69532.t1 | MTR_5g077100 | 32.273 | 220 | 129 | 7 | 50 | 259 | 45 | 254 | 4.47e-15 | 75.5 |
| MS.gene69532.t1 | MTR_7g063030 | 30.545 | 275 | 153 | 14 | 4 | 254 | 1 | 261 | 4.98e-14 | 72.0 |
| MS.gene69532.t1 | MTR_2g090410 | 34.694 | 147 | 85 | 6 | 46 | 186 | 34 | 175 | 6.48e-14 | 72.0 |
| MS.gene69532.t1 | MTR_7g062940 | 28.839 | 267 | 157 | 12 | 9 | 254 | 2 | 256 | 1.24e-13 | 70.9 |
| MS.gene69532.t1 | MTR_7g115740 | 32.593 | 135 | 70 | 7 | 46 | 167 | 38 | 164 | 1.33e-13 | 70.9 |
| MS.gene69532.t1 | MTR_3g068025 | 28.315 | 279 | 150 | 12 | 9 | 254 | 7 | 268 | 3.12e-13 | 69.7 |
| MS.gene69532.t1 | MTR_2g090250 | 26.872 | 227 | 148 | 5 | 44 | 253 | 34 | 259 | 1.23e-12 | 68.2 |
| MS.gene69532.t1 | MTR_5g035910 | 28.992 | 238 | 135 | 10 | 42 | 254 | 36 | 264 | 7.38e-11 | 62.8 |
| MS.gene69532.t1 | MTR_7g062890 | 30.244 | 205 | 116 | 9 | 72 | 254 | 58 | 257 | 7.90e-11 | 62.8 |
| MS.gene69532.t1 | MTR_8g068050 | 28.916 | 166 | 104 | 4 | 10 | 170 | 21 | 177 | 9.33e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69532.t1 | AT5G10530 | 35.019 | 257 | 139 | 13 | 19 | 258 | 10 | 255 | 1.46e-23 | 100 |
| MS.gene69532.t1 | AT5G65600 | 34.211 | 190 | 106 | 7 | 71 | 243 | 76 | 263 | 2.15e-19 | 88.2 |
| MS.gene69532.t1 | AT5G55830 | 31.716 | 268 | 153 | 11 | 10 | 255 | 7 | 266 | 8.69e-18 | 83.6 |
| MS.gene69532.t1 | AT5G03140 | 29.245 | 212 | 135 | 6 | 50 | 251 | 51 | 257 | 9.81e-16 | 77.4 |
| MS.gene69532.t1 | AT4G29050 | 27.363 | 201 | 127 | 5 | 72 | 254 | 60 | 259 | 5.00e-13 | 69.3 |
| MS.gene69532.t1 | AT4G29050 | 27.363 | 201 | 127 | 5 | 72 | 254 | 74 | 273 | 5.22e-13 | 69.3 |
| MS.gene69532.t1 | AT3G55550 | 29.583 | 240 | 142 | 9 | 34 | 253 | 26 | 258 | 1.20e-12 | 68.2 |
| MS.gene69532.t1 | AT1G53080 | 29.694 | 229 | 128 | 10 | 59 | 258 | 57 | 281 | 8.06e-12 | 64.7 |
| MS.gene69532.t1 | AT4G04960 | 33.775 | 151 | 90 | 4 | 46 | 190 | 35 | 181 | 7.72e-11 | 62.8 |
Find 53 sgRNAs with CRISPR-Local
Find 61 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGACCAATGCTAACTGTTTC+TGG | 0.178047 | 3.1:-33142689 | None:intergenic |
| AGATTTGGAATTACACTATT+TGG | 0.215421 | 3.1:-33142368 | None:intergenic |
| ATTAACCCTTATACGATTAT+AGG | 0.243083 | 3.1:+33142203 | MS.gene69532:CDS |
| CCATCTGTGTTGTTAAGATT+TGG | 0.245140 | 3.1:-33142383 | None:intergenic |
| GCACGACCTATAATCGTATA+AGG | 0.280994 | 3.1:-33142209 | None:intergenic |
| GATCCTAACAATGCACATAT+TGG | 0.297717 | 3.1:+33142488 | MS.gene69532:CDS |
| TTGATAATTATCACAATGAT+TGG | 0.305021 | 3.1:+33142465 | MS.gene69532:CDS |
| TCAAGGGAATGCTGTCATTC+AGG | 0.316108 | 3.1:+33142154 | MS.gene69532:CDS |
| ACAGTTAGCATTGGTCTATC+TGG | 0.319313 | 3.1:+33142695 | MS.gene69532:CDS |
| ATTCAACACCCGTTCCCATT+TGG | 0.342088 | 3.1:+33142237 | MS.gene69532:CDS |
| GACTTAGCTGATTACATCTC+TGG | 0.349333 | 3.1:+33142113 | MS.gene69532:CDS |
| CAACACAGATGGTGGAGATC+TGG | 0.350959 | 3.1:+33142394 | MS.gene69532:CDS |
| GGGAACGGGTGTTGAATATA+AGG | 0.357167 | 3.1:-33142231 | None:intergenic |
| TTCAACACCCGTTCCCATTT+GGG | 0.360630 | 3.1:+33142238 | MS.gene69532:CDS |
| GAAACTCACTTGGAGCTTAC+TGG | 0.370616 | 3.1:+33142176 | MS.gene69532:CDS |
| CCCCATGGGATTCACAAAAC+GGG | 0.386898 | 3.1:+33142546 | MS.gene69532:CDS |
| ACTGCTTTCAATCGATTTGT+TGG | 0.405940 | 3.1:+33142434 | MS.gene69532:CDS |
| TGAAGATGACTAACAGAAAC+TGG | 0.410445 | 3.1:-33142031 | None:intergenic |
| ATCCTAACAATGCACATATT+GGG | 0.411998 | 3.1:+33142489 | MS.gene69532:CDS |
| CCCATTTGGGATAGTGCAAC+TGG | 0.412436 | 3.1:+33142251 | MS.gene69532:CDS |
| GCCAGTTGCACTATCCCAAA+TGG | 0.414802 | 3.1:-33142252 | None:intergenic |
| ACTAACAGAAACTGGTTAGT+TGG | 0.419127 | 3.1:-33142023 | None:intergenic |
| GAATGACAGCATTCCCTTGA+AGG | 0.432002 | 3.1:-33142151 | None:intergenic |
| TCCCCATGGGATTCACAAAA+CGG | 0.443828 | 3.1:+33142545 | MS.gene69532:CDS |
| TGATAATTATCACAATGATT+GGG | 0.445401 | 3.1:+33142466 | MS.gene69532:CDS |
| ATCCCAATATGTGCATTGTT+AGG | 0.450564 | 3.1:-33142491 | None:intergenic |
| GACCAATGCTAACTGTTTCT+GGG | 0.454186 | 3.1:-33142688 | None:intergenic |
| TGAATCCCATGGGGATGTCT+TGG | 0.462545 | 3.1:-33142537 | None:intergenic |
| GTTTCTCTCATTGACGAGAA+TGG | 0.472278 | 3.1:+33142620 | MS.gene69532:CDS |
| TTCAGTTACTAGCAAGAGAA+AGG | 0.481258 | 3.1:-33142060 | None:intergenic |
| GCACTATCCCAAATGGGAAC+GGG | 0.488710 | 3.1:-33142245 | None:intergenic |
| AACACAGATGGTGGAGATCT+GGG | 0.502642 | 3.1:+33142395 | MS.gene69532:CDS |
| CACGACCTATAATCGTATAA+GGG | 0.505615 | 3.1:-33142208 | None:intergenic |
| TTTGGAATTACACTATTTGG+TGG | 0.521911 | 3.1:-33142365 | None:intergenic |
| ACTTAGCTGATTACATCTCT+GGG | 0.525752 | 3.1:+33142114 | MS.gene69532:CDS |
| CCAGTTGCACTATCCCAAAT+GGG | 0.537384 | 3.1:-33142251 | None:intergenic |
| TGCACTATCCCAAATGGGAA+CGG | 0.540036 | 3.1:-33142246 | None:intergenic |
| AATGACAGCATTCCCTTGAA+GGG | 0.551329 | 3.1:-33142150 | None:intergenic |
| GGTAGTTATCCACGAGCTGA+TGG | 0.555952 | 3.1:+33142323 | MS.gene69532:CDS |
| CTCCCAGAAACAGTTAGCAT+TGG | 0.565328 | 3.1:+33142686 | MS.gene69532:CDS |
| CCAAATCTTAACAACACAGA+TGG | 0.577172 | 3.1:+33142383 | MS.gene69532:CDS |
| AATCTTAACAACACAGATGG+TGG | 0.587455 | 3.1:+33142386 | MS.gene69532:CDS |
| TGTCATTCAGGAAACTCACT+TGG | 0.593945 | 3.1:+33142166 | MS.gene69532:CDS |
| CAAATCAACGACTTGAGCAA+CGG | 0.597604 | 3.1:-33142654 | None:intergenic |
| TTCATCCAAGACATCCCCAT+GGG | 0.607724 | 3.1:+33142532 | MS.gene69532:CDS |
| AAGATAAGACCATCAGCTCG+TGG | 0.612801 | 3.1:-33142332 | None:intergenic |
| GATGTAATCAGCTAAGTCGA+AGG | 0.627754 | 3.1:-33142108 | None:intergenic |
| AAATATATGTCATTGAAACA+TGG | 0.630792 | 3.1:+33142741 | MS.gene69532:CDS |
| CCCATGGGATTCACAAAACG+GGG | 0.631871 | 3.1:+33142547 | MS.gene69532:CDS |
| AGTATGATTTATGTTCTCTG+AGG | 0.647177 | 3.1:-33142804 | None:intergenic |
| TTTCATCCAAGACATCCCCA+TGG | 0.656398 | 3.1:+33142531 | MS.gene69532:CDS |
| GCTCGTGGATAACTACCGAA+CGG | 0.706851 | 3.1:-33142317 | None:intergenic |
| CTTAGCTGATTACATCTCTG+GGG | 0.723307 | 3.1:+33142115 | MS.gene69532:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATATGTCATTGAAACA+TGG | + | chr3.1:33142741-33142760 | MS.gene69532:CDS | 20.0% |
| !! | TGATAATTATCACAATGATT+GGG | + | chr3.1:33142466-33142485 | MS.gene69532:CDS | 20.0% |
| !!! | TTGATAATTATCACAATGAT+TGG | + | chr3.1:33142465-33142484 | MS.gene69532:CDS | 20.0% |
| ! | AAAAAACTTTAACCCTTCAA+GGG | + | chr3.1:33142138-33142157 | MS.gene69532:CDS | 25.0% |
| ! | ATTAACCCTTATACGATTAT+AGG | + | chr3.1:33142203-33142222 | MS.gene69532:CDS | 25.0% |
| !! | AGATTTGGAATTACACTATT+TGG | - | chr3.1:33142371-33142390 | None:intergenic | 25.0% |
| AGTATGATTTATGTTCTCTG+AGG | - | chr3.1:33142807-33142826 | None:intergenic | 30.0% | |
| ATCCTAACAATGCACATATT+GGG | + | chr3.1:33142489-33142508 | MS.gene69532:CDS | 30.0% | |
| GAAAAAACTTTAACCCTTCA+AGG | + | chr3.1:33142137-33142156 | MS.gene69532:CDS | 30.0% | |
| ! | TTTGGAATTACACTATTTGG+TGG | - | chr3.1:33142368-33142387 | None:intergenic | 30.0% |
| AATCTTAACAACACAGATGG+TGG | + | chr3.1:33142386-33142405 | MS.gene69532:CDS | 35.0% | |
| ACTAACAGAAACTGGTTAGT+TGG | - | chr3.1:33142026-33142045 | None:intergenic | 35.0% | |
| ACTTAGCTGATTACATCTCT+GGG | + | chr3.1:33142114-33142133 | MS.gene69532:CDS | 35.0% | |
| ATCCCAATATGTGCATTGTT+AGG | - | chr3.1:33142494-33142513 | None:intergenic | 35.0% | |
| CACGACCTATAATCGTATAA+GGG | - | chr3.1:33142211-33142230 | None:intergenic | 35.0% | |
| CCAAATCTTAACAACACAGA+TGG | + | chr3.1:33142383-33142402 | MS.gene69532:CDS | 35.0% | |
| GATCCTAACAATGCACATAT+TGG | + | chr3.1:33142488-33142507 | MS.gene69532:CDS | 35.0% | |
| TGAAGATGACTAACAGAAAC+TGG | - | chr3.1:33142034-33142053 | None:intergenic | 35.0% | |
| TTCAGTTACTAGCAAGAGAA+AGG | - | chr3.1:33142063-33142082 | None:intergenic | 35.0% | |
| ! | CCATCTGTGTTGTTAAGATT+TGG | - | chr3.1:33142386-33142405 | None:intergenic | 35.0% |
| !! | ACTGCTTTCAATCGATTTGT+TGG | + | chr3.1:33142434-33142453 | MS.gene69532:CDS | 35.0% |
| AATGACAGCATTCCCTTGAA+GGG | - | chr3.1:33142153-33142172 | None:intergenic | 40.0% | |
| AGACCAATGCTAACTGTTTC+TGG | - | chr3.1:33142692-33142711 | None:intergenic | 40.0% | |
| CAAATCAACGACTTGAGCAA+CGG | - | chr3.1:33142657-33142676 | None:intergenic | 40.0% | |
| CTTAGCTGATTACATCTCTG+GGG | + | chr3.1:33142115-33142134 | MS.gene69532:CDS | 40.0% | |
| GACTTAGCTGATTACATCTC+TGG | + | chr3.1:33142113-33142132 | MS.gene69532:CDS | 40.0% | |
| GATGTAATCAGCTAAGTCGA+AGG | - | chr3.1:33142111-33142130 | None:intergenic | 40.0% | |
| GCACGACCTATAATCGTATA+AGG | - | chr3.1:33142212-33142231 | None:intergenic | 40.0% | |
| GTTTCTCTCATTGACGAGAA+TGG | + | chr3.1:33142620-33142639 | MS.gene69532:CDS | 40.0% | |
| TGTCATTCAGGAAACTCACT+TGG | + | chr3.1:33142166-33142185 | MS.gene69532:CDS | 40.0% | |
| ! | GACCAATGCTAACTGTTTCT+GGG | - | chr3.1:33142691-33142710 | None:intergenic | 40.0% |
| !! | ACAGTTAGCATTGGTCTATC+TGG | + | chr3.1:33142695-33142714 | MS.gene69532:CDS | 40.0% |
| !! | TCTTTTTCTCTTGTGCCGTT+CGG | + | chr3.1:33142302-33142321 | MS.gene69532:CDS | 40.0% |
| !! | TTGACGTTTTTCAACTGACG+TGG | - | chr3.1:33142723-33142742 | None:intergenic | 40.0% |
| AAGATAAGACCATCAGCTCG+TGG | - | chr3.1:33142335-33142354 | None:intergenic | 45.0% | |
| ATTCAACACCCGTTCCCATT+TGG | + | chr3.1:33142237-33142256 | MS.gene69532:CDS | 45.0% | |
| CCAGTTGCACTATCCCAAAT+GGG | - | chr3.1:33142254-33142273 | None:intergenic | 45.0% | |
| CGGCACAAGAGAAAAAGAGA+AGG | - | chr3.1:33142300-33142319 | None:intergenic | 45.0% | |
| CTCCCAGAAACAGTTAGCAT+TGG | + | chr3.1:33142686-33142705 | MS.gene69532:CDS | 45.0% | |
| GAAACTCACTTGGAGCTTAC+TGG | + | chr3.1:33142176-33142195 | MS.gene69532:CDS | 45.0% | |
| GAATGACAGCATTCCCTTGA+AGG | - | chr3.1:33142154-33142173 | None:intergenic | 45.0% | |
| TCAAGGGAATGCTGTCATTC+AGG | + | chr3.1:33142154-33142173 | MS.gene69532:CDS | 45.0% | |
| TCCCCATGGGATTCACAAAA+CGG | + | chr3.1:33142545-33142564 | MS.gene69532:CDS | 45.0% | |
| TGCACTATCCCAAATGGGAA+CGG | - | chr3.1:33142249-33142268 | None:intergenic | 45.0% | |
| TTCAACACCCGTTCCCATTT+GGG | + | chr3.1:33142238-33142257 | MS.gene69532:CDS | 45.0% | |
| TTCATCCAAGACATCCCCAT+GGG | + | chr3.1:33142532-33142551 | MS.gene69532:CDS | 45.0% | |
| TTTCATCCAAGACATCCCCA+TGG | + | chr3.1:33142531-33142550 | MS.gene69532:CDS | 45.0% | |
| !! | AACACAGATGGTGGAGATCT+GGG | + | chr3.1:33142395-33142414 | MS.gene69532:CDS | 45.0% |
| !! | GGGAACGGGTGTTGAATATA+AGG | - | chr3.1:33142234-33142253 | None:intergenic | 45.0% |
| CCCATGGGATTCACAAAACG+GGG | + | chr3.1:33142547-33142566 | MS.gene69532:CDS | 50.0% | |
| CCCCATGGGATTCACAAAAC+GGG | + | chr3.1:33142546-33142565 | MS.gene69532:CDS | 50.0% | |
| GCACTATCCCAAATGGGAAC+GGG | - | chr3.1:33142248-33142267 | None:intergenic | 50.0% | |
| GCCAGTTGCACTATCCCAAA+TGG | - | chr3.1:33142255-33142274 | None:intergenic | 50.0% | |
| GCTCGTGGATAACTACCGAA+CGG | - | chr3.1:33142320-33142339 | None:intergenic | 50.0% | |
| GGTAGTTATCCACGAGCTGA+TGG | + | chr3.1:33142323-33142342 | MS.gene69532:CDS | 50.0% | |
| TGAATCCCATGGGGATGTCT+TGG | - | chr3.1:33142540-33142559 | None:intergenic | 50.0% | |
| ! | ACCCCGTTTTGTGAATCCCA+TGG | - | chr3.1:33142551-33142570 | None:intergenic | 50.0% |
| ! | CCCATTTGGGATAGTGCAAC+TGG | + | chr3.1:33142251-33142270 | MS.gene69532:CDS | 50.0% |
| ! | CCCCGTTTTGTGAATCCCAT+GGG | - | chr3.1:33142550-33142569 | None:intergenic | 50.0% |
| ! | CCCGTTTTGTGAATCCCATG+GGG | - | chr3.1:33142549-33142568 | None:intergenic | 50.0% |
| !! | CAACACAGATGGTGGAGATC+TGG | + | chr3.1:33142394-33142413 | MS.gene69532:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 33142011 | 33142835 | 33142011 | ID=MS.gene69532 |
| chr3.1 | mRNA | 33142011 | 33142835 | 33142011 | ID=MS.gene69532.t1;Parent=MS.gene69532 |
| chr3.1 | exon | 33142011 | 33142835 | 33142011 | ID=MS.gene69532.t1.exon1;Parent=MS.gene69532.t1 |
| chr3.1 | CDS | 33142011 | 33142835 | 33142011 | ID=cds.MS.gene69532.t1;Parent=MS.gene69532.t1 |
| Gene Sequence |
| Protein sequence |
