AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene69597

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene69597.t1 MTR_8g043650 86.498 237 32 0 1 237 1 237 2.10e-155 431
MS.gene69597.t1 MTR_3g052920 91.743 218 18 0 1 218 1 218 9.69e-151 419
MS.gene69597.t1 MTR_1g105920 88.991 218 24 0 1 218 1 218 2.99e-147 410
MS.gene69597.t1 MTR_2g030740 88.608 237 27 0 1 237 1 237 2.09e-146 408
MS.gene69597.t1 MTR_1g105910 86.076 237 33 0 1 237 1 237 2.57e-146 408
MS.gene69597.t1 MTR_1g012570 85.232 237 35 0 1 237 1 237 1.10e-139 391
MS.gene69597.t1 MTR_1g105905 78.636 220 47 0 18 237 1 220 2.02e-130 367
MS.gene69597.t1 MTR_3g052870 82.192 219 20 1 1 219 1 200 1.48e-128 362
MS.gene69597.t1 MTR_1g108510 72.766 235 46 3 1 225 1 227 3.46e-119 339
MS.gene69597.t1 MTR_0121s0080 70.886 237 68 1 1 237 1 236 1.19e-118 338
MS.gene69597.t1 MTR_3g030770 71.915 235 48 3 1 225 1 227 2.43e-118 337
MS.gene69597.t1 MTR_1g106070 86.339 183 25 0 1 183 1 183 9.15e-117 331
MS.gene69597.t1 MTR_5g055100 65.401 237 82 0 1 237 1 237 2.45e-115 329
MS.gene69597.t1 MTR_2g085280 66.102 236 80 0 1 236 1 236 5.70e-115 328
MS.gene69597.t1 MTR_1g077360 69.333 225 69 0 1 225 1 225 2.70e-114 327
MS.gene69597.t1 MTR_1g075600 70.222 225 67 0 1 225 1 225 8.81e-114 325
MS.gene69597.t1 MTR_2g093190 71.064 235 50 3 1 225 1 227 9.15e-114 325
MS.gene69597.t1 MTR_2g085250 65.678 236 81 0 1 236 1 236 1.57e-113 325
MS.gene69597.t1 MTR_1g108580 69.787 235 53 3 1 225 1 227 5.43e-112 321
MS.gene69597.t1 MTR_5g045560 67.511 237 77 0 1 237 1 237 7.50e-109 313
MS.gene69597.t1 MTR_5g053390 66.222 225 76 0 1 225 1 225 1.07e-105 305
MS.gene69597.t1 MTR_7g062350 67.757 214 68 1 24 237 36 248 8.52e-103 298
MS.gene69597.t1 MTR_0121s0100 78.125 128 28 0 1 128 1 128 1.39e-68 207
MS.gene69597.t1 MTR_1g075570 64.045 178 50 1 18 195 1 164 1.12e-67 206
MS.gene69597.t1 MTR_3g030780 74.419 129 33 0 1 129 1 129 3.63e-64 196
MS.gene69597.t1 MTR_3g080940 58.442 154 64 0 7 160 7 160 1.90e-63 197
MS.gene69597.t1 MTR_3g067910 70.588 102 29 1 21 121 2 103 1.17e-45 148
MS.gene69597.t1 MTR_2g105290 39.181 171 94 2 5 172 8 171 2.82e-38 131
MS.gene69597.t1 MTR_8g086290 39.884 173 90 3 5 170 8 173 4.18e-38 131
MS.gene69597.t1 MTR_7g028448 45.161 155 73 3 5 159 8 150 1.95e-33 119
MS.gene69597.t1 MTR_4g036915 45.161 155 73 3 5 159 8 150 1.95e-33 119
MS.gene69597.t1 MTR_1g108500 59.292 113 23 2 8 118 94 185 2.08e-31 118
MS.gene69597.t1 MTR_4g127140 36.957 184 96 4 5 175 8 184 1.87e-28 106
MS.gene69597.t1 MTR_3g067875 83.929 56 9 0 18 73 1 56 2.03e-27 100
MS.gene69597.t1 MTR_3g067915 53.191 94 44 0 33 126 3 96 2.15e-25 95.9
MS.gene69597.t1 MTR_1g047550 62.319 69 26 0 9 77 2 70 1.15e-24 96.7
MS.gene69597.t1 MTR_8g079502 62.319 69 26 0 9 77 2 70 2.54e-24 95.9
MS.gene69597.t1 MTR_1g054265 45.946 111 57 2 9 118 2 110 6.19e-24 94.4
MS.gene69597.t1 MTR_1g063160 48.544 103 51 2 9 109 2 104 1.81e-23 93.6
MS.gene69597.t1 MTR_3g067870 69.841 63 19 0 16 78 83 145 1.87e-23 92.8
MS.gene69597.t1 MTR_4g131030 40.517 116 54 2 9 109 2 117 2.02e-23 94.4
MS.gene69597.t1 MTR_8g046350 40.152 132 67 3 9 135 2 126 4.76e-23 92.0
MS.gene69597.t1 MTR_8g051580 45.545 101 53 1 9 109 2 100 8.31e-23 91.7
MS.gene69597.t1 MTR_4g094632 41.509 106 60 1 9 114 2 105 2.62e-20 84.7
MS.gene69597.t1 MTR_4g093970 34.545 165 85 3 10 153 29 191 5.48e-20 85.9
MS.gene69597.t1 MTR_3g452380 33.333 168 89 5 3 150 11 175 1.94e-19 84.3
MS.gene69597.t1 MTR_3g005530 52.941 68 32 0 9 76 2 69 3.69e-19 83.2
MS.gene69597.t1 MTR_4g094638 41.509 106 61 1 9 113 2 107 2.16e-18 80.1
MS.gene69597.t1 MTR_4g102530 49.315 73 37 0 10 82 3 75 3.36e-18 80.1
MS.gene69597.t1 MTR_1g053070 49.383 81 41 0 9 89 2 82 3.46e-18 81.3
MS.gene69597.t1 MTR_2g017865 31.148 183 97 4 9 165 17 196 1.32e-17 79.7
MS.gene69597.t1 MTR_5g066180 51.471 68 33 0 9 76 2 69 1.48e-17 79.0
MS.gene69597.t1 MTR_5g032520 28.638 213 128 6 9 201 2 210 1.63e-17 79.0
MS.gene69597.t1 MTR_8g022970 34.356 163 92 4 8 163 17 171 2.13e-17 77.4
MS.gene69597.t1 MTR_8g033270 51.471 68 33 0 9 76 2 69 2.15e-17 79.0
MS.gene69597.t1 MTR_5g032150 29.858 211 129 6 9 201 2 211 2.88e-17 78.2
MS.gene69597.t1 MTR_8g087860 51.471 68 33 0 9 76 18 85 3.21e-17 78.2
MS.gene69597.t1 MTR_3g102570 42.308 104 57 3 9 111 2 103 5.06e-17 79.0
MS.gene69597.t1 MTR_1g101970 50.000 68 34 0 9 76 2 69 1.08e-16 75.9
MS.gene69597.t1 MTR_4g109830 47.826 69 35 1 9 76 2 70 1.25e-16 76.6
MS.gene69597.t1 MTR_6g464720 49.275 69 34 1 9 76 2 70 1.26e-16 77.0
MS.gene69597.t1 MTR_8g033220 47.436 78 41 0 10 87 3 80 1.61e-16 76.3
MS.gene69597.t1 MTR_8g033220 47.436 78 41 0 10 87 3 80 2.03e-16 75.9
MS.gene69597.t1 MTR_7g075870 38.532 109 65 1 10 118 3 109 2.45e-16 75.5
MS.gene69597.t1 MTR_2g009890 48.529 68 35 0 9 76 2 69 3.45e-16 76.3
MS.gene69597.t1 MTR_0003s0590 51.471 68 33 0 9 76 2 69 4.14e-16 75.5
MS.gene69597.t1 MTR_4g084740 48.684 76 37 2 9 83 2 76 7.98e-16 75.9
MS.gene69597.t1 MTR_2g461710 55.357 56 25 0 9 64 2 57 9.41e-16 69.7
MS.gene69597.t1 MTR_6g015975 49.275 69 34 1 9 76 2 70 1.01e-15 74.3
MS.gene69597.t1 MTR_7g016600 49.275 69 34 1 9 76 2 70 1.19e-15 74.3
MS.gene69597.t1 MTR_5g031000 48.529 68 35 0 9 76 2 69 1.30e-15 73.6
MS.gene69597.t1 MTR_5g031000 48.529 68 35 0 9 76 2 69 1.45e-15 73.6
MS.gene69597.t1 MTR_8g066260 40.964 83 46 1 9 91 2 81 1.64e-15 73.6
MS.gene69597.t1 MTR_5g046790 45.070 71 36 1 9 79 2 69 3.49e-15 72.0
MS.gene69597.t1 MTR_7g075870 38.182 110 65 2 10 118 3 110 4.12e-15 72.0
MS.gene69597.t1 MTR_5g046870 47.826 69 35 1 9 76 2 70 4.96e-15 69.3
MS.gene69597.t1 MTR_5g021270 50.000 70 33 1 9 76 2 71 5.75e-15 72.0
MS.gene69597.t1 MTR_5g021270 50.000 70 33 1 9 76 2 71 5.83e-15 72.0
MS.gene69597.t1 MTR_3g109930 32.639 144 81 3 27 163 20 154 6.08e-15 70.9
MS.gene69597.t1 MTR_3g437790 34.507 142 78 5 26 159 30 164 7.68e-15 70.9
MS.gene69597.t1 MTR_7g016630 43.478 69 38 1 9 76 2 70 1.84e-14 70.9
MS.gene69597.t1 MTR_5g066960 49.123 57 29 0 9 65 2 58 2.18e-14 66.2
MS.gene69597.t1 MTR_1g038300 47.143 70 35 1 9 76 2 71 2.87e-14 70.1
MS.gene69597.t1 MTR_3g088615 44.286 70 37 1 9 76 2 71 3.34e-14 68.9
MS.gene69597.t1 MTR_7g075850 45.714 70 36 1 9 76 2 71 4.63e-14 69.7
MS.gene69597.t1 MTR_8g097090 46.377 69 36 1 9 76 2 70 5.58e-14 69.3
MS.gene69597.t1 MTR_1g029670 46.970 66 34 1 9 74 2 66 5.87e-14 68.2
MS.gene69597.t1 MTR_3g084980 55.357 56 25 0 9 64 2 57 6.08e-14 69.3
MS.gene69597.t1 MTR_3g113030 27.586 174 104 4 9 181 2 154 7.14e-14 68.9
MS.gene69597.t1 MTR_4g108720 29.545 176 102 9 9 172 2 167 8.02e-14 70.1
MS.gene69597.t1 MTR_4g109810 51.786 56 27 0 9 64 2 57 9.20e-14 68.9
MS.gene69597.t1 MTR_4g093030 47.541 61 32 0 9 69 2 62 2.95e-12 63.2
MS.gene69597.t1 MTR_4g051538 33.103 145 82 3 5 147 5 136 8.04e-12 63.2
MS.gene69597.t1 MTR_4g036050 28.750 160 101 5 9 158 2 158 9.62e-12 62.4
MS.gene69597.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 1.94e-11 61.2
MS.gene69597.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 2.17e-11 61.2
MS.gene69597.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 2.45e-11 61.6
MS.gene69597.t1 MTR_2g045020 31.288 163 84 7 7 159 21 165 2.50e-11 61.2
MS.gene69597.t1 MTR_1g041615 44.156 77 42 1 20 95 17 93 5.64e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene69597.t1 AT5G60440 54.787 188 78 3 5 189 3 186 3.01e-63 199
MS.gene69597.t1 AT2G24840 49.080 163 72 4 6 162 60 217 1.45e-43 148
MS.gene69597.t1 AT1G01530 42.105 190 102 3 4 192 2 184 8.82e-43 145
MS.gene69597.t1 AT1G65360 40.212 189 106 3 5 192 3 185 1.63e-41 141
MS.gene69597.t1 AT4G36590 46.296 162 81 2 5 160 3 164 7.70e-39 135
MS.gene69597.t1 AT3G66656 42.520 127 69 1 9 131 2 128 9.86e-26 99.4
MS.gene69597.t1 AT2G34440 44.444 117 56 2 9 121 2 113 1.08e-25 99.0
MS.gene69597.t1 AT3G04100 34.756 164 99 5 2 159 7 168 1.78e-25 99.8
MS.gene69597.t1 AT1G72350 33.553 152 68 3 9 160 43 161 7.68e-22 90.5
MS.gene69597.t1 AT4G18960 29.508 244 134 8 5 226 15 242 5.87e-20 85.9
MS.gene69597.t1 AT4G22950 50.649 77 38 0 10 86 3 79 9.85e-20 83.6
MS.gene69597.t1 AT4G22950 42.202 109 60 1 10 118 3 108 2.80e-19 83.6
MS.gene69597.t1 AT4G22950 42.202 109 60 1 10 118 3 108 2.80e-19 83.6
MS.gene69597.t1 AT4G09960 46.512 86 45 1 9 93 2 87 2.87e-19 83.2
MS.gene69597.t1 AT4G09960 46.512 86 45 1 9 93 2 87 3.43e-19 83.6
MS.gene69597.t1 AT4G09960 46.512 86 45 1 9 93 3 88 3.80e-19 83.2
MS.gene69597.t1 AT4G09960 46.512 86 45 1 9 93 12 97 5.04e-19 83.2
MS.gene69597.t1 AT2G45660 33.333 168 84 7 10 162 3 157 5.65e-19 81.3
MS.gene69597.t1 AT4G09960 46.512 86 45 1 9 93 28 113 7.27e-19 83.2
MS.gene69597.t1 AT1G28460 29.193 161 107 2 5 158 4 164 8.97e-19 81.3
MS.gene69597.t1 AT2G45650 52.941 68 32 0 9 76 2 69 9.37e-19 82.8
MS.gene69597.t1 AT4G09960 46.512 86 45 1 9 93 97 182 2.00e-18 83.2
MS.gene69597.t1 AT2G45660 33.133 166 83 7 10 160 3 155 2.35e-18 80.9
MS.gene69597.t1 AT2G22540 39.130 138 64 5 9 132 2 133 7.47e-18 80.1
MS.gene69597.t1 AT2G22540 39.130 138 64 5 9 132 2 133 7.47e-18 80.1
MS.gene69597.t1 AT1G29962 29.341 167 102 4 5 165 4 160 1.38e-17 78.2
MS.gene69597.t1 AT4G24540 33.987 153 74 4 9 156 2 132 1.89e-17 78.6
MS.gene69597.t1 AT3G61120 31.250 160 94 4 9 160 2 153 2.17e-17 79.0
MS.gene69597.t1 AT5G51870 53.731 67 31 0 10 76 3 69 2.93e-17 77.0
MS.gene69597.t1 AT2G42830 47.368 76 40 0 1 76 9 84 3.10e-17 78.6
MS.gene69597.t1 AT2G42830 47.368 76 40 0 1 76 9 84 3.10e-17 78.6
MS.gene69597.t1 AT3G57230 47.059 68 36 0 9 76 2 69 3.25e-17 76.3
MS.gene69597.t1 AT3G58780 50.704 71 35 0 6 76 20 90 3.87e-17 78.2
MS.gene69597.t1 AT3G58780 50.704 71 35 0 6 76 14 84 4.04e-17 78.2
MS.gene69597.t1 AT5G51870 53.731 67 31 0 10 76 3 69 4.05e-17 77.4
MS.gene69597.t1 AT5G51870 50.000 72 36 0 5 76 21 92 5.56e-17 76.6
MS.gene69597.t1 AT3G58780 50.704 71 35 0 6 76 14 84 7.01e-17 78.2
MS.gene69597.t1 AT5G51870 53.731 67 31 0 10 76 3 69 7.82e-17 77.0
MS.gene69597.t1 AT5G51870 53.731 67 31 0 10 76 13 79 9.07e-17 77.0
MS.gene69597.t1 AT5G10140 50.725 69 33 1 9 76 2 70 9.82e-17 75.5
MS.gene69597.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.08e-16 73.6
MS.gene69597.t1 AT5G62165 38.235 102 51 2 10 111 3 92 1.16e-16 75.1
MS.gene69597.t1 AT5G62165 38.235 102 51 2 10 111 3 92 1.16e-16 75.1
MS.gene69597.t1 AT5G62165 38.235 102 51 2 10 111 3 92 1.16e-16 75.1
MS.gene69597.t1 AT3G57390 50.000 68 34 0 9 76 2 69 1.23e-16 76.6
MS.gene69597.t1 AT1G22130 37.143 105 65 1 9 112 2 106 1.29e-16 78.2
MS.gene69597.t1 AT4G37940 48.529 68 35 0 9 76 2 69 1.30e-16 76.3
MS.gene69597.t1 AT4G37940 48.529 68 35 0 9 76 2 69 1.36e-16 75.1
MS.gene69597.t1 AT4G37940 48.529 68 35 0 9 76 2 69 1.37e-16 76.3
MS.gene69597.t1 AT5G13790 43.011 93 44 1 9 101 2 85 1.41e-16 77.0
MS.gene69597.t1 AT5G62165 38.235 102 51 2 10 111 3 92 1.50e-16 74.7
MS.gene69597.t1 AT5G62165 38.235 102 51 2 10 111 3 92 1.50e-16 74.7
MS.gene69597.t1 AT5G62165 38.235 102 51 2 10 111 3 92 1.50e-16 74.7
MS.gene69597.t1 AT5G62165 38.235 102 51 2 10 111 3 92 1.50e-16 74.7
MS.gene69597.t1 AT5G62165 38.235 102 51 2 10 111 3 92 1.50e-16 74.7
MS.gene69597.t1 AT5G10140 50.725 69 33 1 9 76 2 70 1.69e-16 75.1
MS.gene69597.t1 AT1G77980 38.095 105 64 1 9 112 2 106 1.85e-16 77.4
MS.gene69597.t1 AT4G11880 50.000 72 35 1 10 80 3 74 1.86e-16 75.1
MS.gene69597.t1 AT4G11880 50.000 72 35 1 10 80 3 74 1.86e-16 75.1
MS.gene69597.t1 AT5G10140 50.725 69 33 1 9 76 2 70 1.87e-16 75.5
MS.gene69597.t1 AT3G57230 47.059 68 36 0 9 76 2 69 1.93e-16 76.3
MS.gene69597.t1 AT3G57230 47.059 68 36 0 9 76 2 69 1.93e-16 76.3
MS.gene69597.t1 AT5G13790 51.471 68 33 0 9 76 2 69 1.97e-16 76.6
MS.gene69597.t1 AT5G10140 50.725 69 33 1 9 76 2 70 2.05e-16 75.1
MS.gene69597.t1 AT3G57390 50.000 68 34 0 9 76 2 69 2.72e-16 76.3
MS.gene69597.t1 AT5G62165 38.235 102 51 2 10 111 3 92 4.01e-16 74.3
MS.gene69597.t1 AT5G62165 38.235 102 51 2 10 111 3 92 4.01e-16 74.3
MS.gene69597.t1 AT4G11880 50.000 72 35 1 10 80 3 74 4.07e-16 75.1
MS.gene69597.t1 AT4G11880 50.000 72 35 1 10 80 3 74 4.07e-16 75.1
MS.gene69597.t1 AT5G51860 52.239 67 32 0 10 76 3 69 4.21e-16 74.7
MS.gene69597.t1 AT1G17310 53.165 79 35 1 8 86 47 123 4.66e-16 74.7
MS.gene69597.t1 AT5G62165 38.235 102 51 2 10 111 3 92 4.86e-16 74.7
MS.gene69597.t1 AT5G62165 38.235 102 51 2 10 111 3 92 4.86e-16 74.7
MS.gene69597.t1 AT5G62165 38.235 102 51 2 10 111 3 92 4.86e-16 74.7
MS.gene69597.t1 AT1G69120 40.659 91 51 1 9 99 2 89 5.06e-16 75.1
MS.gene69597.t1 AT1G77950 46.053 76 39 2 9 83 2 76 5.33e-16 75.1
MS.gene69597.t1 AT1G77950 46.053 76 39 2 9 83 2 76 5.33e-16 75.1
MS.gene69597.t1 AT1G77950 46.053 76 39 2 9 83 2 76 5.33e-16 75.1
MS.gene69597.t1 AT1G77950 46.053 76 39 2 9 83 2 76 5.33e-16 75.1
MS.gene69597.t1 AT5G51860 52.239 67 32 0 10 76 3 69 5.43e-16 74.3
MS.gene69597.t1 AT1G17310 53.165 79 35 1 8 86 58 134 5.64e-16 74.7
MS.gene69597.t1 AT2G22630 47.059 68 36 0 9 76 2 69 6.47e-16 74.7
MS.gene69597.t1 AT2G22630 47.059 68 36 0 9 76 2 69 6.47e-16 74.7
MS.gene69597.t1 AT5G60910 49.296 71 33 1 9 79 2 69 7.28e-16 74.7
MS.gene69597.t1 AT1G26310 47.826 69 35 1 9 76 2 70 1.01e-15 74.3
MS.gene69597.t1 AT1G69120 40.659 91 51 1 9 99 2 89 1.05e-15 74.3
MS.gene69597.t1 AT3G30260 46.377 69 36 1 9 76 2 70 1.12e-15 74.3
MS.gene69597.t1 AT3G54340 47.143 70 35 1 9 76 2 71 1.51e-15 73.6
MS.gene69597.t1 AT2G22540 38.406 138 60 6 9 132 2 128 2.04e-15 73.2
MS.gene69597.t1 AT5G15800 49.275 69 34 1 9 76 2 70 2.41e-15 73.6
MS.gene69597.t1 AT1G28450 26.857 175 122 3 5 173 4 178 2.95e-15 72.0
MS.gene69597.t1 AT5G15800 49.275 69 34 1 9 76 2 70 3.71e-15 73.2
MS.gene69597.t1 AT5G20240 47.143 70 35 1 9 76 2 71 4.17e-15 70.5
MS.gene69597.t1 AT2G14210 46.377 69 36 1 9 76 2 70 4.70e-15 72.4
MS.gene69597.t1 AT2G14210 46.377 69 36 1 9 76 2 70 6.07e-15 72.0
MS.gene69597.t1 AT5G20240 47.143 70 35 1 9 76 2 71 6.66e-15 71.2
MS.gene69597.t1 AT5G23260 44.681 94 44 3 5 90 12 105 1.28e-14 71.6
MS.gene69597.t1 AT5G65050 46.377 69 36 1 9 76 2 70 1.37e-14 70.1
MS.gene69597.t1 AT5G23260 44.681 94 44 3 5 90 12 105 1.37e-14 71.6
MS.gene69597.t1 AT3G02310 47.826 69 35 1 9 76 2 70 1.45e-14 70.5
MS.gene69597.t1 AT3G58780 52.459 61 29 0 6 66 14 74 1.73e-14 70.9
MS.gene69597.t1 AT5G23260 44.318 88 43 2 9 90 2 89 2.23e-14 70.5
MS.gene69597.t1 AT5G23260 44.318 88 43 2 9 90 2 89 2.28e-14 70.9
MS.gene69597.t1 AT5G65050 46.377 69 36 1 9 76 2 70 2.31e-14 69.3
MS.gene69597.t1 AT3G58780 52.459 61 29 0 6 66 14 74 2.38e-14 70.9
MS.gene69597.t1 AT5G65050 46.377 69 36 1 9 76 2 70 2.65e-14 69.7
MS.gene69597.t1 AT5G65050 46.377 69 36 1 9 76 2 70 2.71e-14 69.3
MS.gene69597.t1 AT2G03710 53.571 56 26 0 9 64 2 57 3.57e-14 68.9
MS.gene69597.t1 AT5G65060 46.377 69 36 1 9 76 2 70 3.88e-14 68.9
MS.gene69597.t1 AT3G02310 47.826 69 35 1 9 76 2 70 4.17e-14 70.1
MS.gene69597.t1 AT5G65060 46.377 69 36 1 9 76 2 70 4.67e-14 68.6
MS.gene69597.t1 AT5G65060 46.377 69 36 1 9 76 2 70 5.51e-14 68.6
MS.gene69597.t1 AT1G24260 27.600 250 141 8 9 234 2 235 6.75e-14 69.3
MS.gene69597.t1 AT1G24260 46.377 69 36 1 9 76 2 70 6.87e-14 69.3
MS.gene69597.t1 AT1G24260 46.377 69 36 1 9 76 2 70 7.10e-14 68.9
MS.gene69597.t1 AT2G03710 47.143 70 35 2 9 76 2 71 8.85e-14 69.3
MS.gene69597.t1 AT2G03710 47.143 70 35 2 9 76 2 71 9.19e-14 68.9
MS.gene69597.t1 AT1G47760 35.135 111 57 3 9 118 2 98 1.28e-13 67.4
MS.gene69597.t1 AT1G71692 44.286 70 38 1 9 77 2 71 1.62e-13 67.8
MS.gene69597.t1 AT5G65070 42.029 69 39 1 9 76 2 70 2.15e-13 65.9
MS.gene69597.t1 AT1G18750 27.228 202 123 7 9 188 2 201 3.50e-13 68.6
MS.gene69597.t1 AT1G18750 27.228 202 123 7 9 188 2 201 3.61e-13 68.6
MS.gene69597.t1 AT5G65070 42.029 69 39 1 9 76 2 70 4.65e-13 66.2
MS.gene69597.t1 AT5G65070 42.029 69 39 1 9 76 2 70 8.36e-13 65.9
MS.gene69597.t1 AT5G65070 42.029 69 39 1 9 76 2 70 9.25e-13 65.9
MS.gene69597.t1 AT2G03060 28.070 171 106 7 9 164 2 170 1.17e-12 67.0
MS.gene69597.t1 AT2G03060 28.070 171 106 7 9 164 2 170 1.17e-12 67.0
MS.gene69597.t1 AT2G03060 28.070 171 106 7 9 164 2 170 1.17e-12 67.0
MS.gene69597.t1 AT2G03060 28.070 171 106 7 9 164 2 170 1.28e-12 67.0
MS.gene69597.t1 AT1G69540 33.846 130 79 5 9 134 2 128 2.03e-12 66.2
MS.gene69597.t1 AT1G69540 33.846 130 79 5 9 134 2 128 2.52e-12 65.9
MS.gene69597.t1 AT5G65070 47.368 57 30 0 9 65 2 58 4.32e-12 63.9
MS.gene69597.t1 AT1G18750 38.961 77 44 2 9 83 2 77 5.05e-12 65.1
MS.gene69597.t1 AT4G37435 40.278 72 42 1 9 79 2 73 2.22e-11 61.2
MS.gene69597.t1 AT5G65080 42.029 69 39 1 9 76 9 77 2.45e-11 61.2
MS.gene69597.t1 AT2G26320 40.000 70 40 1 9 76 18 87 3.13e-11 58.9
MS.gene69597.t1 AT1G46408 42.857 77 40 2 10 82 5 81 4.77e-11 61.6
MS.gene69597.t1 AT5G65080 48.148 54 28 0 9 62 9 62 6.51e-11 60.5
MS.gene69597.t1 AT5G27130 40.000 85 47 2 2 82 6 90 6.77e-11 61.6

Find 64 sgRNAs with CRISPR-Local

Find 78 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGTTTGGCTTCAACAATA+TGG 0.281947 3.1:+40062906 MS.gene69597:CDS
ATCTGAGCTTGTGGAGGATT+TGG 0.315191 3.1:-40062841 None:intergenic
TGGTGGGCTGGTCCCATTGA+TGG 0.319959 3.1:+40062655 MS.gene69597:CDS
ATTGCATGGTACCATTGTTT+TGG 0.337688 3.1:-40062498 None:intergenic
TTGTTGATCATCATGTTGAT+AGG 0.343214 3.1:+40062734 MS.gene69597:CDS
AGACGGCCGAGACTCAATTT+TGG 0.343533 3.1:+40062635 MS.gene69597:CDS
TCTATGACCGTATCAACATT+AGG 0.346403 3.1:-40062451 None:intergenic
ATGTTGCAACCTCATTGGTT+TGG 0.406166 3.1:+40062892 MS.gene69597:CDS
GTCCCATTGATGGGATGAAT+CGG 0.407918 3.1:+40062665 MS.gene69597:CDS
TGGTTTGGCTTCAACAATAT+GGG 0.414863 3.1:+40062907 MS.gene69597:CDS
GCCCTATGTTGCAACCTCAT+TGG 0.417005 3.1:+40062887 MS.gene69597:CDS
TGTTGATAGGCTTGTAATCC+AGG 0.417213 3.1:+40062747 MS.gene69597:CDS
GGTGGGCTGGTCCCATTGAT+GGG 0.419749 3.1:+40062656 MS.gene69597:CDS
CTTCTTGAATAATTCAAGTT+GGG 0.442228 3.1:-40062689 None:intergenic
TGAATTATTCAAGAAGGCTC+TGG 0.442548 3.1:+40062696 MS.gene69597:CDS
TCTTCTCGATGTCCAGTAGC+TGG 0.453400 3.1:-40062582 None:intergenic
GGCCCGATTCATCCCATCAA+TGG 0.457427 3.1:-40062668 None:intergenic
GTGGAGGATTTGGTTGATGA+TGG 0.460225 3.1:-40062831 None:intergenic
CTATGACCGTATCAACATTA+GGG 0.463178 3.1:-40062450 None:intergenic
TCTCGGCCGTCTTGCGCAAG+TGG 0.485406 3.1:-40062624 None:intergenic
ACCAATGAGGTTGCAACATA+GGG 0.499051 3.1:-40062888 None:intergenic
GGGCTCTGATAAAACTGTGC+TGG 0.499811 3.1:-40062868 None:intergenic
GCCCGATTCATCCCATCAAT+GGG 0.506203 3.1:-40062667 None:intergenic
GACTCAGATCAACCAGCTAC+TGG 0.508380 3.1:+40062570 MS.gene69597:CDS
GTAGCTGGTTGATCTGAGTC+AGG 0.512943 3.1:-40062567 None:intergenic
TCCCATTGATGGGATGAATC+GGG 0.513278 3.1:+40062666 MS.gene69597:CDS
CCTTCTTGAATAATTCAAGT+TGG 0.516494 3.1:-40062690 None:intergenic
ATGATGGAGAGGCATGTTTG+AGG 0.521462 3.1:-40062815 None:intergenic
ACAGAGGGTGCAAAGCTCAC+TGG 0.525840 3.1:-40062368 None:intergenic
AACCAATGAGGTTGCAACAT+AGG 0.525962 3.1:-40062889 None:intergenic
GCTGGAAGCATCTGAGCTTG+TGG 0.533277 3.1:-40062850 None:intergenic
GCTCGCGCACGTTGGCGCTA+CGG 0.534754 3.1:-40062534 None:intergenic
CCAACTTGAATTATTCAAGA+AGG 0.535705 3.1:+40062690 MS.gene69597:CDS
GGGCTCGGATCAAAAGAATC+CGG 0.538178 3.1:-40062953 None:intergenic
TGGCCACCCTAATGTTGATA+CGG 0.542985 3.1:+40062444 MS.gene69597:CDS
AACGAAAATACCTTCTCTCC+AGG 0.551818 3.1:-40062421 None:intergenic
CTTTCTCGAAGCGCCGTAGT+GGG 0.553366 3.1:+40062332 MS.gene69597:CDS
GGAGGTGGATATGGACCCTC+CGG 0.560213 3.1:+40062934 MS.gene69597:CDS
TCATAGATCGTTATCTATCT+CGG 0.561253 3.1:+40062467 MS.gene69597:CDS
ACTTTCTCGAAGCGCCGTAG+TGG 0.571963 3.1:+40062331 MS.gene69597:CDS
AGTATTGAGCTCGCGCACGT+TGG 0.573538 3.1:-40062542 None:intergenic
AGCCCACCAAAATTGAGTCT+CGG 0.574024 3.1:-40062641 None:intergenic
GCTGAGCCACTTGCGCAAGA+CGG 0.576977 3.1:+40062618 MS.gene69597:CDS
GGTTTGGCTTCAACAATATG+GGG 0.578983 3.1:+40062908 MS.gene69597:CDS
AGTGAGCTTTGCACCCTCTG+TGG 0.587031 3.1:+40062370 MS.gene69597:CDS
AGCAACATCTGCACCACAGA+GGG 0.595144 3.1:-40062383 None:intergenic
CTTCAACCATGTCAAGTGGA+AGG 0.599332 3.1:+40062245 None:intergenic
TGTGCTTCAACCATGTCAAG+TGG 0.603608 3.1:+40062241 None:intergenic
ATGTTTGAGTAGGAGCACCC+TGG 0.605264 3.1:-40062765 None:intergenic
CTTTCTTGAAGAGCCCACTA+CGG 0.610979 3.1:-40062345 None:intergenic
GGAAGCATCTGAGCTTGTGG+AGG 0.624119 3.1:-40062847 None:intergenic
CGGATCCCACCCCAAAACAA+TGG 0.631700 3.1:+40062487 MS.gene69597:CDS
GTTGATAGGCTTGTAATCCA+GGG 0.636489 3.1:+40062748 MS.gene69597:CDS
TGGTACCATGCAATTCATTG+AGG 0.638950 3.1:+40062507 MS.gene69597:CDS
GTGAGCCTCAATGAATTGCA+TGG 0.640763 3.1:-40062512 None:intergenic
GTTTGGCTTCAACAATATGG+GGG 0.642093 3.1:+40062909 MS.gene69597:CDS
GGATTTGGTTGATGATGGAG+AGG 0.642684 3.1:-40062826 None:intergenic
TTGTTGAAGCCAAACCAATG+AGG 0.650877 3.1:-40062901 None:intergenic
CTCGGATCAAAAGAATCCGG+AGG 0.655674 3.1:-40062950 None:intergenic
TTTGGCTTCAACAATATGGG+GGG 0.656547 3.1:+40062910 MS.gene69597:CDS
TCGGATCAAAAGAATCCGGA+GGG 0.678771 3.1:-40062949 None:intergenic
TGACCGTATCAACATTAGGG+TGG 0.698195 3.1:-40062447 None:intergenic
TCAAGTGGAAGGAAAAGCCG+AGG 0.705721 3.1:+40062256 MS.gene69597:CDS
GAGCAACATCTGCACCACAG+AGG 0.729838 3.1:-40062384 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTCATCTCAATCTTT+TGG - chr3.1:40062285-40062304 None:intergenic 20.0%
! AAAAATGGAAATGTTTGAGT+AGG - chr3.1:40062778-40062797 None:intergenic 25.0%
! GAATTGTTTCCAAGAAAAAA+TGG - chr3.1:40062793-40062812 None:intergenic 25.0%
!! CTTCTTGAATAATTCAAGTT+GGG - chr3.1:40062692-40062711 None:intergenic 25.0%
!!! CAAACATTTCCATTTTTTCT+TGG + chr3.1:40062781-40062800 MS.gene69597:CDS 25.0%
CCAACTTGAATTATTCAAGA+AGG + chr3.1:40062690-40062709 MS.gene69597:CDS 30.0%
CCTTCTTGAATAATTCAAGT+TGG - chr3.1:40062693-40062712 None:intergenic 30.0%
TCATAGATCGTTATCTATCT+CGG + chr3.1:40062467-40062486 MS.gene69597:CDS 30.0%
TTGTTGATCATCATGTTGAT+AGG + chr3.1:40062734-40062753 MS.gene69597:CDS 30.0%
CTATGACCGTATCAACATTA+GGG - chr3.1:40062453-40062472 None:intergenic 35.0%
TCTATGACCGTATCAACATT+AGG - chr3.1:40062454-40062473 None:intergenic 35.0%
TGAATTATTCAAGAAGGCTC+TGG + chr3.1:40062696-40062715 MS.gene69597:CDS 35.0%
! ATTGCATGGTACCATTGTTT+TGG - chr3.1:40062501-40062520 None:intergenic 35.0%
! TGGTTTGGCTTCAACAATAT+GGG + chr3.1:40062907-40062926 MS.gene69597:CDS 35.0%
! TTGCATGGTACCATTGTTTT+GGG - chr3.1:40062500-40062519 None:intergenic 35.0%
!! TTGGTTTGGCTTCAACAATA+TGG + chr3.1:40062906-40062925 MS.gene69597:CDS 35.0%
AACCAATGAGGTTGCAACAT+AGG - chr3.1:40062892-40062911 None:intergenic 40.0%
AACGAAAATACCTTCTCTCC+AGG - chr3.1:40062424-40062443 None:intergenic 40.0%
ACCAATGAGGTTGCAACATA+GGG - chr3.1:40062891-40062910 None:intergenic 40.0%
TGGTACCATGCAATTCATTG+AGG + chr3.1:40062507-40062526 MS.gene69597:CDS 40.0%
TTGTTGAAGCCAAACCAATG+AGG - chr3.1:40062904-40062923 None:intergenic 40.0%
! ATGTTGCAACCTCATTGGTT+TGG + chr3.1:40062892-40062911 MS.gene69597:CDS 40.0%
! GGTTTGGCTTCAACAATATG+GGG + chr3.1:40062908-40062927 MS.gene69597:CDS 40.0%
! GTTGATAGGCTTGTAATCCA+GGG + chr3.1:40062748-40062767 MS.gene69597:CDS 40.0%
! GTTTGGCTTCAACAATATGG+GGG + chr3.1:40062909-40062928 MS.gene69597:CDS 40.0%
! TGTTGATAGGCTTGTAATCC+AGG + chr3.1:40062747-40062766 MS.gene69597:CDS 40.0%
! TTTGGCTTCAACAATATGGG+GGG + chr3.1:40062910-40062929 MS.gene69597:CDS 40.0%
!! TGCATGGTACCATTGTTTTG+GGG - chr3.1:40062499-40062518 None:intergenic 40.0%
!!! GGAGAGAAGGTATTTTCGTT+TGG + chr3.1:40062424-40062443 MS.gene69597:CDS 40.0%
AGCCCACCAAAATTGAGTCT+CGG - chr3.1:40062644-40062663 None:intergenic 45.0%
ATCTGAGCTTGTGGAGGATT+TGG - chr3.1:40062844-40062863 None:intergenic 45.0%
CTTTCTTGAAGAGCCCACTA+CGG - chr3.1:40062348-40062367 None:intergenic 45.0%
GTCCCATTGATGGGATGAAT+CGG + chr3.1:40062665-40062684 MS.gene69597:CDS 45.0%
GTGAGCCTCAATGAATTGCA+TGG - chr3.1:40062515-40062534 None:intergenic 45.0%
TCCCATTGATGGGATGAATC+GGG + chr3.1:40062666-40062685 MS.gene69597:CDS 45.0%
TGACCGTATCAACATTAGGG+TGG - chr3.1:40062450-40062469 None:intergenic 45.0%
TGGCCACCCTAATGTTGATA+CGG + chr3.1:40062444-40062463 MS.gene69597:CDS 45.0%
! ATGATGGAGAGGCATGTTTG+AGG - chr3.1:40062818-40062837 None:intergenic 45.0%
! TCTCAATCTTTTGGCGACCT+CGG - chr3.1:40062276-40062295 None:intergenic 45.0%
! TGTTTTCTCACCTGGAGAGA+AGG + chr3.1:40062411-40062430 MS.gene69597:CDS 45.0%
!! GGATTTGGTTGATGATGGAG+AGG - chr3.1:40062829-40062848 None:intergenic 45.0%
!! GTGGAGGATTTGGTTGATGA+TGG - chr3.1:40062834-40062853 None:intergenic 45.0%
!!! ATGGTACCATTGTTTTGGGG+TGG - chr3.1:40062496-40062515 None:intergenic 45.0%
!!! TGGTACCATTGTTTTGGGGT+GGG - chr3.1:40062495-40062514 None:intergenic 45.0%
AGCAACATCTGCACCACAGA+GGG - chr3.1:40062386-40062405 None:intergenic 50.0%
GACTCAGATCAACCAGCTAC+TGG + chr3.1:40062570-40062589 MS.gene69597:CDS 50.0%
GCCCGATTCATCCCATCAAT+GGG - chr3.1:40062670-40062689 None:intergenic 50.0%
GCCCTATGTTGCAACCTCAT+TGG + chr3.1:40062887-40062906 MS.gene69597:CDS 50.0%
GTAGCTGGTTGATCTGAGTC+AGG - chr3.1:40062570-40062589 None:intergenic 50.0%
TCAAGTGGAAGGAAAAGCCG+AGG + chr3.1:40062256-40062275 MS.gene69597:CDS 50.0%
TCTTCTCGATGTCCAGTAGC+TGG - chr3.1:40062585-40062604 None:intergenic 50.0%
TTCAACAATATGGGGGGAGG+AGG + chr3.1:40062916-40062935 MS.gene69597:CDS 50.0%
! AGACGGCCGAGACTCAATTT+TGG + chr3.1:40062635-40062654 MS.gene69597:CDS 50.0%
! GGGCTCTGATAAAACTGTGC+TGG - chr3.1:40062871-40062890 None:intergenic 50.0%
!! ATGTTTGAGTAGGAGCACCC+TGG - chr3.1:40062768-40062787 None:intergenic 50.0%
!! GAGACTCAATTTTGGTGGGC+TGG + chr3.1:40062643-40062662 MS.gene69597:CDS 50.0%
!! GCTCTCGTTGTTTTCTCACC+TGG + chr3.1:40062403-40062422 MS.gene69597:CDS 50.0%
!! GGCCGAGACTCAATTTTGGT+GGG + chr3.1:40062639-40062658 MS.gene69597:CDS 50.0%
AACAATATGGGGGGAGGAGG+TGG + chr3.1:40062919-40062938 MS.gene69597:CDS 55.0%
AGTGAGCTTTGCACCCTCTG+TGG + chr3.1:40062370-40062389 MS.gene69597:CDS 55.0%
CGGATCCCACCCCAAAACAA+TGG + chr3.1:40062487-40062506 MS.gene69597:CDS 55.0%
GAGCAACATCTGCACCACAG+AGG - chr3.1:40062387-40062406 None:intergenic 55.0%
GGCCCGATTCATCCCATCAA+TGG - chr3.1:40062671-40062690 None:intergenic 55.0%
GGCTTCAACAATATGGGGGG+AGG + chr3.1:40062913-40062932 MS.gene69597:CDS 55.0%
! ACAGAGGGTGCAAAGCTCAC+TGG - chr3.1:40062371-40062390 None:intergenic 55.0%
! AGTATTGAGCTCGCGCACGT+TGG - chr3.1:40062545-40062564 None:intergenic 55.0%
! CGGCCGAGACTCAATTTTGG+TGG + chr3.1:40062638-40062657 MS.gene69597:CDS 55.0%
!! ACTTTCTCGAAGCGCCGTAG+TGG + chr3.1:40062331-40062350 MS.gene69597:CDS 55.0%
!! CTTTCTCGAAGCGCCGTAGT+GGG + chr3.1:40062332-40062351 MS.gene69597:CDS 55.0%
!! GCTGGAAGCATCTGAGCTTG+TGG - chr3.1:40062853-40062872 None:intergenic 55.0%
!! GGAAGCATCTGAGCTTGTGG+AGG - chr3.1:40062850-40062869 None:intergenic 55.0%
ATGGGGGGAGGAGGTGGATA+TGG + chr3.1:40062925-40062944 MS.gene69597:CDS 60.0%
GCTGAGCCACTTGCGCAAGA+CGG + chr3.1:40062618-40062637 MS.gene69597:CDS 60.0%
GGAGGTGGATATGGACCCTC+CGG + chr3.1:40062934-40062953 MS.gene69597:CDS 60.0%
!! GGTGGGCTGGTCCCATTGAT+GGG + chr3.1:40062656-40062675 MS.gene69597:CDS 60.0%
!! TGGTGGGCTGGTCCCATTGA+TGG + chr3.1:40062655-40062674 MS.gene69597:CDS 60.0%
TCTCGGCCGTCTTGCGCAAG+TGG - chr3.1:40062627-40062646 None:intergenic 65.0%
GCTCGCGCACGTTGGCGCTA+CGG - chr3.1:40062537-40062556 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 40062253 40062966 40062253 ID=MS.gene69597
chr3.1 mRNA 40062253 40062966 40062253 ID=MS.gene69597.t1;Parent=MS.gene69597
chr3.1 exon 40062253 40062966 40062253 ID=MS.gene69597.t1.exon1;Parent=MS.gene69597.t1
chr3.1 CDS 40062253 40062966 40062253 ID=cds.MS.gene69597.t1;Parent=MS.gene69597.t1
Gene Sequence

>MS.gene69597

ATGTCAAGTGGAAGGAAAAGCCGAGGTCGCCAAAAGATTGAGATGAAAAAAATGAGCAACGAGAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCCAGTGAGCTTTGCACCCTCTGTGGTGCAGATGTTGCTCTCGTTGTTTTCTCACCTGGAGAGAAGGTATTTTCGTTTGGCCACCCTAATGTTGATACGGTCATAGATCGTTATCTATCTCGGATCCCACCCCAAAACAATGGTACCATGCAATTCATTGAGGCTCACCGTAGCGCCAACGTGCGCGAGCTCAATACTCACCTGACTCAGATCAACCAGCTACTGGACATCGAGAAGAAATGTGCTGAAGAGCTGAGCCACTTGCGCAAGACGGCCGAGACTCAATTTTGGTGGGCTGGTCCCATTGATGGGATGAATCGGGCCCAACTTGAATTATTCAAGAAGGCTCTGGATGAGCTTAAGAAAATTGTTGATCATCATGTTGATAGGCTTGTAATCCAGGGTGCTCCTACTCAAACATTTCCATTTTTTCTTGGAAACAATTCATCCTCAAACATGCCTCTCCATCATCAACCAAATCCTCCACAAGCTCAGATGCTTCCAGCACAGTTTTATCAGAGCCCTATGTTGCAACCTCATTGGTTTGGCTTCAACAATATGGGGGGAGGAGGTGGATATGGACCCTCCGGATTCTTTTGA
Protein sequence

>MS.gene69597.t1

MSSGRKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGADVALVVFSPGEKVFSFGHPNVDTVIDRYLSRIPPQNNGTMQFIEAHRSANVRELNTHLTQINQLLDIEKKCAEELSHLRKTAETQFWWAGPIDGMNRAQLELFKKALDELKKIVDHHVDRLVIQGAPTQTFPFFLGNNSSSNMPLHHQPNPPQAQMLPAQFYQSPMLQPHWFGFNNMGGGGGYGPSGFF