Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69625.t1 | RHN61540.1 | 79.6 | 54 | 11 | 0 | 38 | 91 | 74 | 127 | 3.30E-16 | 95.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69625.t1 | Q9LIH6 | 57.4 | 54 | 23 | 0 | 38 | 91 | 172 | 225 | 6.5e-13 | 76.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69625.t1 | A0A072UXG3 | 79.6 | 54 | 11 | 0 | 38 | 91 | 121 | 174 | 2.4e-16 | 95.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053396 | MS.gene69625 | 0.900343 | 8.06E-78 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69625.t1 | MTR_4g074280 | 79.630 | 54 | 11 | 0 | 38 | 91 | 121 | 174 | 1.15e-22 | 95.1 |
| MS.gene69625.t1 | MTR_4g074300 | 68.519 | 54 | 17 | 0 | 38 | 91 | 122 | 175 | 3.18e-19 | 85.9 |
| MS.gene69625.t1 | MTR_4g074330 | 62.963 | 54 | 20 | 0 | 38 | 91 | 144 | 197 | 2.15e-17 | 80.9 |
| MS.gene69625.t1 | MTR_1g090620 | 90.625 | 32 | 3 | 0 | 7 | 38 | 55 | 86 | 4.63e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69625.t1 | AT3G18630 | 57.407 | 54 | 23 | 0 | 38 | 91 | 172 | 225 | 4.15e-15 | 74.7 |
Find 84 sgRNAs with CRISPR-Local
Find 225 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCAACTCAATTGAAATTA+TGG | 0.134418 | 5.3:-17831554 | MS.gene69625:CDS |
| GTCTTTCAGGAACCTTATTC+TGG | 0.221122 | 5.3:-17834071 | MS.gene69625:intron |
| AAGACTCGGGGACGTCTTTA+TGG | 0.233436 | 5.3:-17831513 | MS.gene69625:CDS |
| CTCAAGTACATTCTTCAAAA+TGG | 0.251262 | 5.3:+17833992 | None:intergenic |
| CATAATTTCAATTGAGTTGC+AGG | 0.269649 | 5.3:+17831555 | None:intergenic |
| AGATTAGGACACATTATATT+AGG | 0.275665 | 5.3:-17834263 | MS.gene69625:CDS |
| TCTTGAGCAGGAAGCATATA+AGG | 0.293287 | 5.3:-17831622 | MS.gene69625:intron |
| GAGGAGGTTAAGAATGATAT+TGG | 0.297392 | 5.3:-17833972 | MS.gene69625:CDS |
| GCTTCACCAAGTCCAGAATA+AGG | 0.324501 | 5.3:+17834059 | None:intergenic |
| TGCAACTCAATTGAAATTAT+GGG | 0.353224 | 5.3:-17831553 | MS.gene69625:CDS |
| CAGGAACCTTATTCTGGACT+TGG | 0.353686 | 5.3:-17834065 | MS.gene69625:CDS |
| TCTTTATGGTACTGGTGATA+TGG | 0.360936 | 5.3:-17831499 | MS.gene69625:CDS |
| TAAGAATGATATTGGTTGTA+AGG | 0.362595 | 5.3:-17833964 | MS.gene69625:CDS |
| GATGCAGGGCAGCTGGATAC+AGG | 0.367904 | 5.3:-17832502 | MS.gene69625:CDS |
| GGAGATACAACTGAAGGAAT+TGG | 0.373917 | 5.3:-17831291 | MS.gene69625:CDS |
| GATGCACGGCAGTCGGATAC+AGG | 0.375011 | 5.3:-17832442 | MS.gene69625:CDS |
| TAATAAGAGCACACAAGATT+TGG | 0.377553 | 5.3:-17831312 | MS.gene69625:CDS |
| AATGAAGGGGAGTCGGATGC+AGG | 0.398008 | 5.3:-17832532 | MS.gene69625:CDS |
| GCTATCATTCTCGGTTCCTC+AGG | 0.399999 | 5.3:-17834030 | MS.gene69625:CDS |
| GCATCTGGATGTAGGGCATC+TGG | 0.409420 | 5.3:-17832479 | MS.gene69625:CDS |
| ATGGAGAAGGCATCTGATAA+TGG | 0.413051 | 5.3:-17831594 | MS.gene69625:CDS |
| TCTGGACTTGGTGAAGCAAT+GGG | 0.415496 | 5.3:-17834053 | MS.gene69625:CDS |
| GCAGCTGGATACAGGGCATC+TGG | 0.424953 | 5.3:-17832494 | MS.gene69625:CDS |
| GAATATTGATAAGACTTTGA+AGG | 0.433586 | 5.3:-17834229 | MS.gene69625:CDS |
| AATTATGGGCTGAATCAGTT+GGG | 0.435146 | 5.3:-17831539 | MS.gene69625:CDS |
| GATGCAGGGGAGCAAGATGC+AGG | 0.440869 | 5.3:-17832517 | MS.gene69625:CDS |
| TCACTTTGATCAATATTGTC+AGG | 0.442772 | 5.3:-17834187 | MS.gene69625:intron |
| GATGTAGGGCATCTGGATGT+AGG | 0.454950 | 5.3:-17832472 | MS.gene69625:CDS |
| AAATTATGGGCTGAATCAGT+TGG | 0.456563 | 5.3:-17831540 | MS.gene69625:CDS |
| GGAGCAAGATGCAGGGCAGC+TGG | 0.459296 | 5.3:-17832509 | MS.gene69625:CDS |
| CGGGGACGTCTTTATGGTAC+TGG | 0.462779 | 5.3:-17831507 | MS.gene69625:CDS |
| ACGGTGTCAGCCAATCTTGA+TGG | 0.470478 | 5.3:+17831253 | None:intergenic |
| ATGGTAAAGCGCTGCAAGCC+AGG | 0.473032 | 5.3:-17831480 | MS.gene69625:CDS |
| AGCAATGGGGCTATCATTCT+CGG | 0.477510 | 5.3:-17834039 | MS.gene69625:CDS |
| GGAAGCATATAAGGAGAAGA+TGG | 0.480276 | 5.3:-17831613 | MS.gene69625:intron |
| TTCTGGACTTGGTGAAGCAA+TGG | 0.481020 | 5.3:-17834054 | MS.gene69625:CDS |
| CCGACTCCCCTTCATTCAGC+TGG | 0.484775 | 5.3:+17832539 | None:intergenic |
| GATACAGGGCATCTGGATGT+AGG | 0.493578 | 5.3:-17832487 | MS.gene69625:CDS |
| GACGCAGACCAGCTGAATGA+AGG | 0.498682 | 5.3:-17832547 | MS.gene69625:CDS |
| AGTGTTGCTTCCATCAAGAT+TGG | 0.500365 | 5.3:-17831263 | MS.gene69625:CDS |
| GATGCAGTGCAGTTGGATCC+AGG | 0.503877 | 5.3:-17832412 | MS.gene69625:CDS |
| GTATCCGACTGCCGTGCATC+CGG | 0.506762 | 5.3:+17832445 | None:intergenic |
| CAAGCGACTAAGAATCTACA+TGG | 0.511335 | 5.3:-17832622 | MS.gene69625:CDS |
| AGTACATTCTTCAAAATGGA+TGG | 0.513241 | 5.3:+17833996 | None:intergenic |
| ATCAGTTGGGGAAAAGACTC+GGG | 0.520712 | 5.3:-17831526 | MS.gene69625:CDS |
| GCATCTAGATGCAGTGCAGT+TGG | 0.520962 | 5.3:-17832419 | MS.gene69625:CDS |
| TGGTCTGCGTCCCTCTGCCA+TGG | 0.521247 | 5.3:+17832559 | None:intergenic |
| GGTTGTAAGGTTCTACCTCA+TGG | 0.523538 | 5.3:-17833951 | MS.gene69625:CDS |
| AGTTGCAGGATCAACCTCCT+TGG | 0.527395 | 5.3:+17831569 | None:intergenic |
| AATCAGTTGGGGAAAAGACT+CGG | 0.529570 | 5.3:-17831527 | MS.gene69625:CDS |
| ATGAAGGGGAGTCGGATGCA+GGG | 0.537318 | 5.3:-17832531 | MS.gene69625:CDS |
| ACGCAGACCAGCTGAATGAA+GGG | 0.538664 | 5.3:-17832546 | MS.gene69625:CDS |
| ATGTAGGGCATCTGGATGTA+GGG | 0.538829 | 5.3:-17832471 | MS.gene69625:CDS |
| GCATCTGGATGTAGGGCAGC+CGG | 0.540963 | 5.3:-17832464 | MS.gene69625:CDS |
| TGAAGGGGAGTCGGATGCAG+GGG | 0.545352 | 5.3:-17832530 | MS.gene69625:CDS |
| ATACAGGGCATCTGGATGTA+GGG | 0.550689 | 5.3:-17832486 | MS.gene69625:CDS |
| TTTGAAGAATGTACTTGAGG+AGG | 0.565288 | 5.3:-17833988 | MS.gene69625:CDS |
| ATGTAGGGCAGCCGGATGCA+CGG | 0.575761 | 5.3:-17832456 | MS.gene69625:CDS |
| ACGCTACAACACCATGGCAG+AGG | 0.576642 | 5.3:-17832570 | MS.gene69625:CDS |
| CGCTACAACACCATGGCAGA+GGG | 0.584181 | 5.3:-17832569 | MS.gene69625:CDS |
| CCAGCTGAATGAAGGGGAGT+CGG | 0.584342 | 5.3:-17832539 | MS.gene69625:CDS |
| ATGCAGGGCAGCTGGATACA+GGG | 0.585703 | 5.3:-17832501 | MS.gene69625:CDS |
| TTGGATCCAGGTGTTTCACT+AGG | 0.589935 | 5.3:-17832400 | MS.gene69625:intron |
| GTAGAGAGCAAATGCAGCAG+AGG | 0.591348 | 5.3:-17831372 | MS.gene69625:intron |
| CTATCATTCTCGGTTCCTCA+GGG | 0.594726 | 5.3:-17834029 | MS.gene69625:CDS |
| GAAAACTGTGAGAAGGTCAA+AGG | 0.597308 | 5.3:-17832688 | MS.gene69625:CDS |
| ATGCAGGGGAGCAAGATGCA+GGG | 0.599090 | 5.3:-17832516 | MS.gene69625:CDS |
| TCCTAAAGAAAACTGTGAGA+AGG | 0.600517 | 5.3:-17832695 | MS.gene69625:CDS |
| TGATGCTCGAGTTGCACGTG+AGG | 0.614438 | 5.3:-17831348 | MS.gene69625:CDS |
| ATGCACGGCAGTCGGATACA+GGG | 0.614645 | 5.3:-17832441 | MS.gene69625:CDS |
| GCAGCCGGATGCACGGCAGT+CGG | 0.617223 | 5.3:-17832449 | MS.gene69625:CDS |
| GGCATCTGATAATGGAACCA+AGG | 0.625874 | 5.3:-17831586 | MS.gene69625:CDS |
| TGCACGTGAGGAATGTCGCA+AGG | 0.630916 | 5.3:-17831336 | MS.gene69625:CDS |
| ATATAAGGAGAAGATGGAGA+AGG | 0.632833 | 5.3:-17831607 | MS.gene69625:CDS |
| CGCAGACCAGCTGAATGAAG+GGG | 0.641381 | 5.3:-17832545 | MS.gene69625:CDS |
| ATTATGGGCTGAATCAGTTG+GGG | 0.658835 | 5.3:-17831538 | MS.gene69625:CDS |
| AGATTTGGAGATACAACTGA+AGG | 0.675202 | 5.3:-17831297 | MS.gene69625:CDS |
| GCTTTACCTAGTGAAACACC+TGG | 0.684772 | 5.3:+17832394 | None:intergenic |
| CTGGACTTGGTGAAGCAATG+GGG | 0.690829 | 5.3:-17834052 | MS.gene69625:CDS |
| TCAGTTGGGGAAAAGACTCG+GGG | 0.699015 | 5.3:-17831525 | MS.gene69625:CDS |
| GATGGAAATCTGACTCCCTG+AGG | 0.707288 | 5.3:+17834014 | None:intergenic |
| GTGATGACGCTACAACACCA+TGG | 0.716250 | 5.3:-17832576 | MS.gene69625:CDS |
| GTTGTAGCGTCATCACTGAG+AGG | 0.716312 | 5.3:+17832583 | None:intergenic |
| ATCTGATAATGGAACCAAGG+AGG | 0.721491 | 5.3:-17831583 | MS.gene69625:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAATCTATAAAATTGATA+TGG | + | chr5.3:17833432-17833451 | None:intergenic | 10.0% |
| !!! | ATATCAATTTTATAGATTTA+AGG | - | chr5.3:17833431-17833450 | MS.gene69625:intron | 10.0% |
| !!! | TAAATTTTTTATTTTGAAAG+AGG | + | chr5.3:17833575-17833594 | None:intergenic | 10.0% |
| !! | AAATTTATAGAATCATCTAA+TGG | + | chr5.3:17832598-17832617 | None:intergenic | 15.0% |
| !! | AATAAAATATACTAAAGTGA+CGG | - | chr5.3:17832007-17832026 | MS.gene69625:intron | 15.0% |
| !! | ATTAGATGATTCTATAAATT+TGG | - | chr5.3:17832597-17832616 | MS.gene69625:CDS | 15.0% |
| !!! | AATCTTAAGATTATTTTCAA+GGG | - | chr5.3:17833386-17833405 | MS.gene69625:intron | 15.0% |
| !!! | ACAACTTTAATTTAATTTCA+GGG | - | chr5.3:17832230-17832249 | MS.gene69625:intron | 15.0% |
| !!! | ATTTTTAAGAATGAAATGTT+TGG | + | chr5.3:17831921-17831940 | None:intergenic | 15.0% |
| !!! | CACTTTAGTATATTTTATTA+CGG | + | chr5.3:17832006-17832025 | None:intergenic | 15.0% |
| !!! | TAATCTTAAGATTATTTTCA+AGG | - | chr5.3:17833385-17833404 | MS.gene69625:intron | 15.0% |
| !! | AAAAAAGTGATTTCTTTGAA+TGG | - | chr5.3:17831954-17831973 | MS.gene69625:intron | 20.0% |
| !! | ATAATACACCAAATATAGTA+AGG | + | chr5.3:17832381-17832400 | None:intergenic | 20.0% |
| !! | ATCTATAAAATTGATATGGA+AGG | + | chr5.3:17833428-17833447 | None:intergenic | 20.0% |
| !! | ATTACTAAACAAAAGTTCAA+GGG | + | chr5.3:17832798-17832817 | None:intergenic | 20.0% |
| !! | CTATACGAATAGATTAAATA+TGG | - | chr5.3:17831322-17831341 | MS.gene69625:CDS | 20.0% |
| !! | CTGAAATTAAATTAAAGTTG+TGG | + | chr5.3:17832231-17832250 | None:intergenic | 20.0% |
| !! | TAATACACCAAATATAGTAA+GGG | + | chr5.3:17832380-17832399 | None:intergenic | 20.0% |
| !! | TATTACTAAACAAAAGTTCA+AGG | + | chr5.3:17832799-17832818 | None:intergenic | 20.0% |
| !! | TCTATAGAAATGTTAGAAAT+TGG | - | chr5.3:17831857-17831876 | MS.gene69625:intron | 20.0% |
| !! | TTAAGATTATGATCATGATT+AGG | + | chr5.3:17833374-17833393 | None:intergenic | 20.0% |
| !! | TTAGAACATTAATTAGTGTA+TGG | + | chr5.3:17832938-17832957 | None:intergenic | 20.0% |
| !!! | AATTTTATAGATTTAAGGCT+GGG | - | chr5.3:17833436-17833455 | MS.gene69625:intron | 20.0% |
| !!! | CACAACTTTAATTTAATTTC+AGG | - | chr5.3:17832229-17832248 | MS.gene69625:intron | 20.0% |
| !!! | CTATATTCTCTTATGTTTTT+TGG | - | chr5.3:17833011-17833030 | MS.gene69625:intron | 20.0% |
| !!! | CTTTTTTACAAAAAATTGAG+AGG | + | chr5.3:17831980-17831999 | None:intergenic | 20.0% |
| !!! | GCATATAATTTTCAATTTTG+CGG | - | chr5.3:17833846-17833865 | MS.gene69625:intron | 20.0% |
| !!! | GTGCAGTTAATTATTTTTTT+GGG | + | chr5.3:17833649-17833668 | None:intergenic | 20.0% |
| !!! | TAACAAATGTGTTTTTGTTT+TGG | - | chr5.3:17832875-17832894 | MS.gene69625:intron | 20.0% |
| !!! | TCTTTTACATATTGAATTTG+AGG | - | chr5.3:17832827-17832846 | MS.gene69625:intron | 20.0% |
| !!! | TTTTTTATTTTGAAAGAGGA+AGG | + | chr5.3:17833571-17833590 | None:intergenic | 20.0% |
| ! | AAAATGACCCTTACTATATT+TGG | - | chr5.3:17832370-17832389 | MS.gene69625:intron | 25.0% |
| ! | AGATTAGGACACATTATATT+AGG | - | chr5.3:17831478-17831497 | MS.gene69625:intron | 25.0% |
| ! | ATTCACAATTAAAGCATACA+TGG | - | chr5.3:17832052-17832071 | MS.gene69625:intron | 25.0% |
| ! | ATTCTTATGTAAGGAATAGT+TGG | + | chr5.3:17833548-17833567 | None:intergenic | 25.0% |
| ! | GAATATTGATAAGACTTTGA+AGG | - | chr5.3:17831512-17831531 | MS.gene69625:CDS | 25.0% |
| ! | TGCAACTCAATTGAAATTAT+GGG | - | chr5.3:17834188-17834207 | MS.gene69625:CDS | 25.0% |
| ! | TTCTTATGTAAGGAATAGTT+GGG | + | chr5.3:17833547-17833566 | None:intergenic | 25.0% |
| ! | TTGGAGTAAATGATTCAATT+CGG | - | chr5.3:17832616-17832635 | MS.gene69625:CDS | 25.0% |
| !! | ATAATTTTCAATTTTGCGGA+TGG | - | chr5.3:17833850-17833869 | MS.gene69625:intron | 25.0% |
| !! | TAAGAATGATATTGGTTGTA+AGG | - | chr5.3:17831777-17831796 | MS.gene69625:intron | 25.0% |
| !! | TCTATAGAAGCTTTAATCAA+TGG | + | chr5.3:17831845-17831864 | None:intergenic | 25.0% |
| !!! | AAAGTTGGATTTTTTTGATC+TGG | - | chr5.3:17831448-17831467 | MS.gene69625:intron | 25.0% |
| !!! | AAATGTGTTTTTGTTTTGGT+TGG | - | chr5.3:17832879-17832898 | MS.gene69625:intron | 25.0% |
| !!! | AAGTTGGATTTTTTTGATCT+GGG | - | chr5.3:17831449-17831468 | MS.gene69625:intron | 25.0% |
| !!! | CAATTTTATAGATTTAAGGC+TGG | - | chr5.3:17833435-17833454 | MS.gene69625:intron | 25.0% |
| !!! | GATAATTATCATGGTTTTAC+TGG | - | chr5.3:17831584-17831603 | MS.gene69625:CDS | 25.0% |
| !!! | GGTGCAGTTAATTATTTTTT+TGG | + | chr5.3:17833650-17833669 | None:intergenic | 25.0% |
| !!! | GGTTAGTTTGATAATTATCA+TGG | - | chr5.3:17831575-17831594 | MS.gene69625:CDS | 25.0% |
| !!! | TACTTCACTGATTTTGATTT+TGG | - | chr5.3:17831648-17831667 | MS.gene69625:intron | 25.0% |
| !!! | TCAAGTACTGATTGAATTTT+GGG | - | chr5.3:17831390-17831409 | MS.gene69625:intron | 25.0% |
| AAATGAGTGAACAACAGAAA+GGG | + | chr5.3:17832146-17832165 | None:intergenic | 30.0% | |
| AGTACATTCTTCAAAATGGA+TGG | + | chr5.3:17831748-17831767 | None:intergenic | 30.0% | |
| ATGAATGATTGAAGTCCTTA+AGG | - | chr5.3:17832902-17832921 | MS.gene69625:intron | 30.0% | |
| ATTAGCACTATAAGCTCAAT+TGG | + | chr5.3:17832743-17832762 | None:intergenic | 30.0% | |
| CTCAAGTACATTCTTCAAAA+TGG | + | chr5.3:17831752-17831771 | None:intergenic | 30.0% | |
| CTGCAACTCAATTGAAATTA+TGG | - | chr5.3:17834187-17834206 | MS.gene69625:intron | 30.0% | |
| GACAATGCATAAAATATGCA+AGG | + | chr5.3:17833707-17833726 | None:intergenic | 30.0% | |
| GTTTATTCTAAATGCAGAGT+GGG | - | chr5.3:17832117-17832136 | MS.gene69625:intron | 30.0% | |
| TCACTTTGATCAATATTGTC+AGG | - | chr5.3:17831554-17831573 | MS.gene69625:CDS | 30.0% | |
| TCATGGCAATCTTGAAAAAT+GGG | - | chr5.3:17831807-17831826 | MS.gene69625:intron | 30.0% | |
| TGTGAACACATTATGAAGTT+AGG | - | chr5.3:17832089-17832108 | MS.gene69625:intron | 30.0% | |
| TGTTTATTCTAAATGCAGAG+TGG | - | chr5.3:17832116-17832135 | MS.gene69625:intron | 30.0% | |
| ! | CATAATTTCAATTGAGTTGC+AGG | + | chr5.3:17834189-17834208 | None:intergenic | 30.0% |
| ! | GAACTTCTAATCAAGAGTAT+TGG | - | chr5.3:17832304-17832323 | MS.gene69625:intron | 30.0% |
| ! | TAATAAGAGCACACAAGATT+TGG | - | chr5.3:17834429-17834448 | MS.gene69625:intron | 30.0% |
| ! | TAATTAACTGCACCTCTTTT+TGG | - | chr5.3:17833656-17833675 | MS.gene69625:intron | 30.0% |
| ! | TTACTGAATTTTGTTCTCAC+AGG | - | chr5.3:17832260-17832279 | MS.gene69625:intron | 30.0% |
| !! | AAGATTATTTTCAAGGGCAA+GGG | - | chr5.3:17833392-17833411 | MS.gene69625:intron | 30.0% |
| !! | CATTTTGAAGAATGTACTTG+AGG | - | chr5.3:17831750-17831769 | MS.gene69625:intron | 30.0% |
| !! | GATTTGTGGTTTTTGAAAGT+TGG | - | chr5.3:17831433-17831452 | MS.gene69625:intron | 30.0% |
| !! | TAAGATTATTTTCAAGGGCA+AGG | - | chr5.3:17833391-17833410 | MS.gene69625:intron | 30.0% |
| !! | TATGCGAACTTTAAAACAGA+CGG | + | chr5.3:17832965-17832984 | None:intergenic | 30.0% |
| !! | TTGTAACTAGCTTTCAATTC+AGG | - | chr5.3:17832425-17832444 | MS.gene69625:CDS | 30.0% |
| !!! | CAAGTACTGATTGAATTTTG+GGG | - | chr5.3:17831391-17831410 | MS.gene69625:intron | 30.0% |
| !!! | GATTTTGATTTTGGTCTTTC+AGG | - | chr5.3:17831657-17831676 | MS.gene69625:intron | 30.0% |
| !!! | GTCAAGTACTGATTGAATTT+TGG | - | chr5.3:17831389-17831408 | MS.gene69625:intron | 30.0% |
| !!! | TATGTTTTTTGGACAGATCA+TGG | - | chr5.3:17833022-17833041 | MS.gene69625:intron | 30.0% |
| AATACTCGACATTGTTGTAG+AGG | + | chr5.3:17833770-17833789 | None:intergenic | 35.0% | |
| ACAAGAATCCTTCCAATAGT+AGG | - | chr5.3:17833606-17833625 | MS.gene69625:intron | 35.0% | |
| AGAGGAAGGATTCTTATGTA+AGG | + | chr5.3:17833557-17833576 | None:intergenic | 35.0% | |
| AGATTTGGAGATACAACTGA+AGG | - | chr5.3:17834444-17834463 | MS.gene69625:intron | 35.0% | |
| AGTCATAAACTGTTTGTGCA+TGG | - | chr5.3:17832335-17832354 | MS.gene69625:intron | 35.0% | |
| ATATAAGGAGAAGATGGAGA+AGG | - | chr5.3:17834134-17834153 | MS.gene69625:intron | 35.0% | |
| ATTGGAAGGATTCTTGTCTA+GGG | + | chr5.3:17833603-17833622 | None:intergenic | 35.0% | |
| CAAATGAGTGAACAACAGAA+AGG | + | chr5.3:17832147-17832166 | None:intergenic | 35.0% | |
| CTCATGGCAATCTTGAAAAA+TGG | - | chr5.3:17831806-17831825 | MS.gene69625:intron | 35.0% | |
| GAAGCATAAGAGCAAGTATA+TGG | + | chr5.3:17832773-17832792 | None:intergenic | 35.0% | |
| GAGGAGGTTAAGAATGATAT+TGG | - | chr5.3:17831769-17831788 | MS.gene69625:intron | 35.0% | |
| GCAAATGCACATGCAAATAT+AGG | - | chr5.3:17832467-17832486 | MS.gene69625:CDS | 35.0% | |
| TATGGTGTACATGTTCCTTA+AGG | + | chr5.3:17832920-17832939 | None:intergenic | 35.0% | |
| TATTGGAAGGATTCTTGTCT+AGG | + | chr5.3:17833604-17833623 | None:intergenic | 35.0% | |
| TCCTAAAGAAAACTGTGAGA+AGG | - | chr5.3:17833046-17833065 | MS.gene69625:intron | 35.0% | |
| TGCATAAAATATGCAAGGTC+CGG | + | chr5.3:17833702-17833721 | None:intergenic | 35.0% | |
| TGTTGCAATTACTATCTCAG+TGG | - | chr5.3:17833824-17833843 | MS.gene69625:intron | 35.0% | |
| TTTGAAGAATGTACTTGAGG+AGG | - | chr5.3:17831753-17831772 | MS.gene69625:intron | 35.0% | |
| ! | AAATTATGGGCTGAATCAGT+TGG | - | chr5.3:17834201-17834220 | MS.gene69625:CDS | 35.0% |
| ! | AATTATGGGCTGAATCAGTT+GGG | - | chr5.3:17834202-17834221 | MS.gene69625:CDS | 35.0% |
| ! | ACCTTCTCACAGTTTTCTTT+AGG | + | chr5.3:17833050-17833069 | None:intergenic | 35.0% |
| ! | GTCGAGTATTGTCAACTATT+TGG | - | chr5.3:17833780-17833799 | MS.gene69625:intron | 35.0% |
| ! | TCTGTCCTTTTTCTTGTACT+AGG | - | chr5.3:17833506-17833525 | MS.gene69625:intron | 35.0% |
| !! | AACTAGCTTTCAATTCAGGT+AGG | - | chr5.3:17832429-17832448 | MS.gene69625:CDS | 35.0% |
| !! | ATGTTTGTTTTCTCTTGAGC+AGG | - | chr5.3:17834107-17834126 | MS.gene69625:intron | 35.0% |
| !! | ATTGAATTTTGGGGATCTGA+AGG | - | chr5.3:17831400-17831419 | MS.gene69625:intron | 35.0% |
| !! | GAATTGACTTGTGTTTGACT+TGG | - | chr5.3:17831367-17831386 | MS.gene69625:CDS | 35.0% |
| !! | TCTTTATGGTACTGGTGATA+TGG | - | chr5.3:17834242-17834261 | MS.gene69625:CDS | 35.0% |
| !! | TTGAATTTTGGGGATCTGAA+GGG | - | chr5.3:17831401-17831420 | MS.gene69625:intron | 35.0% |
| !!! | ATCATCCACTTTTTCATCTG+TGG | + | chr5.3:17833080-17833099 | None:intergenic | 35.0% |
| !!! | CATTTTTCAAGATTGCCATG+AGG | + | chr5.3:17831808-17831827 | None:intergenic | 35.0% |
| !!! | TTTTTTGGGTGTATACCCAT+AGG | + | chr5.3:17833635-17833654 | None:intergenic | 35.0% |
| AAGATACCCAACATGCTGAA+AGG | + | chr5.3:17833921-17833940 | None:intergenic | 40.0% | |
| AAGGTCCACAGATGAAAAAG+TGG | - | chr5.3:17833072-17833091 | MS.gene69625:intron | 40.0% | |
| AATCAGTTGGGGAAAAGACT+CGG | - | chr5.3:17834214-17834233 | MS.gene69625:CDS | 40.0% | |
| ACGATCATAGAGAAGAAGGA+AGG | - | chr5.3:17832521-17832540 | MS.gene69625:CDS | 40.0% | |
| AGATGAGATGAAATCGACGT+AGG | - | chr5.3:17832851-17832870 | MS.gene69625:intron | 40.0% | |
| AGTATGCGCAGGAGAAAATT+CGG | - | chr5.3:17832567-17832586 | MS.gene69625:CDS | 40.0% | |
| ATAGGTCTCCTACTATTGGA+AGG | + | chr5.3:17833617-17833636 | None:intergenic | 40.0% | |
| CAAGACGATCATAGAGAAGA+AGG | - | chr5.3:17832517-17832536 | MS.gene69625:CDS | 40.0% | |
| CAAGCGACTAAGAATCTACA+TGG | - | chr5.3:17833119-17833138 | MS.gene69625:intron | 40.0% | |
| CATAAAATATGCAAGGTCCG+GGG | + | chr5.3:17833700-17833719 | None:intergenic | 40.0% | |
| CGATCATAGAGAAGAAGGAA+GGG | - | chr5.3:17832522-17832541 | MS.gene69625:CDS | 40.0% | |
| GAAAACTGTGAGAAGGTCAA+AGG | - | chr5.3:17833053-17833072 | MS.gene69625:intron | 40.0% | |
| GATCATAGAGAAGAAGGAAG+GGG | - | chr5.3:17832523-17832542 | MS.gene69625:CDS | 40.0% | |
| GCAGAAACATGGCTACTATA+TGG | + | chr5.3:17834321-17834340 | None:intergenic | 40.0% | |
| GCATAAAATATGCAAGGTCC+GGG | + | chr5.3:17833701-17833720 | None:intergenic | 40.0% | |
| GGAGATACAACTGAAGGAAT+TGG | - | chr5.3:17834450-17834469 | MS.gene69625:intron | 40.0% | |
| GTCTTTCAGGAACCTTATTC+TGG | - | chr5.3:17831670-17831689 | MS.gene69625:intron | 40.0% | |
| TCCAATAGTAGGAGACCTAT+GGG | - | chr5.3:17833617-17833636 | MS.gene69625:intron | 40.0% | |
| TCTTGAAAAATGGGATGTGC+AGG | - | chr5.3:17831816-17831835 | MS.gene69625:intron | 40.0% | |
| TGTTCACTCATTTGTGCAGA+TGG | - | chr5.3:17832153-17832172 | MS.gene69625:intron | 40.0% | |
| TTCCAATAGTAGGAGACCTA+TGG | - | chr5.3:17833616-17833635 | MS.gene69625:intron | 40.0% | |
| TTTCCACCTTTCAGCATGTT+GGG | - | chr5.3:17833912-17833931 | MS.gene69625:intron | 40.0% | |
| ! | ATTATGGGCTGAATCAGTTG+GGG | - | chr5.3:17834203-17834222 | MS.gene69625:CDS | 40.0% |
| ! | GGAAGCATATAAGGAGAAGA+TGG | - | chr5.3:17834128-17834147 | MS.gene69625:intron | 40.0% |
| ! | TATAGTAGCCATGTTTCTGC+CGG | - | chr5.3:17834321-17834340 | MS.gene69625:intron | 40.0% |
| ! | TCTTGAGCAGGAAGCATATA+AGG | - | chr5.3:17834119-17834138 | MS.gene69625:intron | 40.0% |
| !! | AGTGACGGATTTCAGATTTG+TGG | - | chr5.3:17832022-17832041 | MS.gene69625:intron | 40.0% |
| !! | AGTGTTGCTTCCATCAAGAT+TGG | - | chr5.3:17834478-17834497 | MS.gene69625:intron | 40.0% |
| !! | ATCTGATAATGGAACCAAGG+AGG | - | chr5.3:17834158-17834177 | MS.gene69625:intron | 40.0% |
| !! | ATGGAGAAGGCATCTGATAA+TGG | - | chr5.3:17834147-17834166 | MS.gene69625:intron | 40.0% |
| !!! | AAGGGTGTTTTGTGGATTTG+TGG | - | chr5.3:17831419-17831438 | MS.gene69625:intron | 40.0% |
| ACCCATAGGTCTCCTACTAT+TGG | + | chr5.3:17833621-17833640 | None:intergenic | 45.0% | |
| AGCAATGGGGCTATCATTCT+CGG | - | chr5.3:17831702-17831721 | MS.gene69625:intron | 45.0% | |
| ATACCCAACATGCTGAAAGG+TGG | + | chr5.3:17833918-17833937 | None:intergenic | 45.0% | |
| ATCAGTTGGGGAAAAGACTC+GGG | - | chr5.3:17834215-17834234 | MS.gene69625:CDS | 45.0% | |
| ATGGAGATACATGCGATTGC+TGG | + | chr5.3:17834302-17834321 | None:intergenic | 45.0% | |
| CAGGAACCTTATTCTGGACT+TGG | - | chr5.3:17831676-17831695 | MS.gene69625:intron | 45.0% | |
| CTATCATTCTCGGTTCCTCA+GGG | - | chr5.3:17831712-17831731 | MS.gene69625:intron | 45.0% | |
| GAGCGCCTAGTACAAGAAAA+AGG | + | chr5.3:17833514-17833533 | None:intergenic | 45.0% | |
| GCTTCACCAAGTCCAGAATA+AGG | + | chr5.3:17831685-17831704 | None:intergenic | 45.0% | |
| GCTTTACCTAGTGAAACACC+TGG | + | chr5.3:17833350-17833369 | None:intergenic | 45.0% | |
| GGTTGTAAGGTTCTACCTCA+TGG | - | chr5.3:17831790-17831809 | MS.gene69625:intron | 45.0% | |
| GTTTCCACCTTTCAGCATGT+TGG | - | chr5.3:17833911-17833930 | MS.gene69625:intron | 45.0% | |
| TGGAGATACATGCGATTGCT+GGG | + | chr5.3:17834301-17834320 | None:intergenic | 45.0% | |
| TTGGATCCAGGTGTTTCACT+AGG | - | chr5.3:17833341-17833360 | MS.gene69625:intron | 45.0% | |
| ! | ATACAGGGCATCTGGATGTA+GGG | - | chr5.3:17833255-17833274 | MS.gene69625:intron | 45.0% |
| ! | ATAGTAGCCATGTTTCTGCC+GGG | - | chr5.3:17834322-17834341 | MS.gene69625:intron | 45.0% |
| ! | ATGTAGGGCATCTGGATGTA+GGG | - | chr5.3:17833270-17833289 | MS.gene69625:intron | 45.0% |
| ! | TGATCTGGGTGTTGCAGATT+AGG | - | chr5.3:17831463-17831482 | MS.gene69625:intron | 45.0% |
| !! | ACTGCACCTCTTTTTGGTAG+TGG | - | chr5.3:17833662-17833681 | MS.gene69625:intron | 45.0% |
| !! | GGCATCTGATAATGGAACCA+AGG | - | chr5.3:17834155-17834174 | MS.gene69625:intron | 45.0% |
| !! | TCTGGACTTGGTGAAGCAAT+GGG | - | chr5.3:17831688-17831707 | MS.gene69625:intron | 45.0% |
| !! | TTCTGGACTTGGTGAAGCAA+TGG | - | chr5.3:17831687-17831706 | MS.gene69625:intron | 45.0% |
| AAGACTCGGGGACGTCTTTA+TGG | - | chr5.3:17834228-17834247 | MS.gene69625:CDS | 50.0% | |
| ACGCAGACCAGCTGAATGAA+GGG | - | chr5.3:17833195-17833214 | MS.gene69625:intron | 50.0% | |
| AGTTGCAGGATCAACCTCCT+TGG | + | chr5.3:17834175-17834194 | None:intergenic | 50.0% | |
| ATACATGCGATTGCTGGGTC+AGG | + | chr5.3:17834296-17834315 | None:intergenic | 50.0% | |
| GATGGAAATCTGACTCCCTG+AGG | + | chr5.3:17831730-17831749 | None:intergenic | 50.0% | |
| GATGTGGGAATAGTATGCGC+AGG | - | chr5.3:17832556-17832575 | MS.gene69625:CDS | 50.0% | |
| GCATCTAGATGCAGTGCAGT+TGG | - | chr5.3:17833322-17833341 | MS.gene69625:intron | 50.0% | |
| GCTATCATTCTCGGTTCCTC+AGG | - | chr5.3:17831711-17831730 | MS.gene69625:intron | 50.0% | |
| GTAGAGAGCAAATGCAGCAG+AGG | - | chr5.3:17834369-17834388 | MS.gene69625:intron | 50.0% | |
| GTTGTAGCGTCATCACTGAG+AGG | + | chr5.3:17833161-17833180 | None:intergenic | 50.0% | |
| TACATGCGATTGCTGGGTCA+GGG | + | chr5.3:17834295-17834314 | None:intergenic | 50.0% | |
| TCAGTTGGGGAAAAGACTCG+GGG | - | chr5.3:17834216-17834235 | MS.gene69625:CDS | 50.0% | |
| TGAGCTTAGCTCAGCTGGTT+GGG | + | chr5.3:17833729-17833748 | None:intergenic | 50.0% | |
| TTCCATCTGTGCAGCAATCC+CGG | + | chr5.3:17834343-17834362 | None:intergenic | 50.0% | |
| ! | AAGGGGTCGTGTTTCTGATG+TGG | - | chr5.3:17832540-17832559 | MS.gene69625:CDS | 50.0% |
| ! | AGGGGTCGTGTTTCTGATGT+GGG | - | chr5.3:17832541-17832560 | MS.gene69625:CDS | 50.0% |
| ! | GATACAGGGCATCTGGATGT+AGG | - | chr5.3:17833254-17833273 | MS.gene69625:intron | 50.0% |
| ! | GATGTAGGGCATCTGGATGT+AGG | - | chr5.3:17833269-17833288 | MS.gene69625:intron | 50.0% |
| ! | GTGATGACGCTACAACACCA+TGG | - | chr5.3:17833165-17833184 | MS.gene69625:intron | 50.0% |
| !! | CTGGACTTGGTGAAGCAATG+GGG | - | chr5.3:17831689-17831708 | MS.gene69625:intron | 50.0% |
| !!! | ACCTCTTTTTGGTAGTGGCC+GGG | - | chr5.3:17833667-17833686 | MS.gene69625:intron | 50.0% |
| !!! | CACCTCTTTTTGGTAGTGGC+CGG | - | chr5.3:17833666-17833685 | MS.gene69625:intron | 50.0% |
| !!! | GGGATCTGAAGGGTGTTTTG+TGG | - | chr5.3:17831411-17831430 | MS.gene69625:intron | 50.0% |
| AATGAAGGGGAGTCGGATGC+AGG | - | chr5.3:17833209-17833228 | MS.gene69625:intron | 55.0% | |
| ACGCTACAACACCATGGCAG+AGG | - | chr5.3:17833171-17833190 | MS.gene69625:intron | 55.0% | |
| ATGAAGGGGAGTCGGATGCA+GGG | - | chr5.3:17833210-17833229 | MS.gene69625:intron | 55.0% | |
| ATGCACGGCAGTCGGATACA+GGG | - | chr5.3:17833300-17833319 | MS.gene69625:intron | 55.0% | |
| ATGCAGGGCAGCTGGATACA+GGG | - | chr5.3:17833240-17833259 | MS.gene69625:intron | 55.0% | |
| ATGCAGGGGAGCAAGATGCA+GGG | - | chr5.3:17833225-17833244 | MS.gene69625:intron | 55.0% | |
| CAGCAATCCCGGCAGAAACA+TGG | + | chr5.3:17834332-17834351 | None:intergenic | 55.0% | |
| CCAGCTGAATGAAGGGGAGT+CGG | - | chr5.3:17833202-17833221 | MS.gene69625:intron | 55.0% | |
| CGCAGACCAGCTGAATGAAG+GGG | - | chr5.3:17833196-17833215 | MS.gene69625:intron | 55.0% | |
| CGCTACAACACCATGGCAGA+GGG | - | chr5.3:17833172-17833191 | MS.gene69625:intron | 55.0% | |
| CGGGGACGTCTTTATGGTAC+TGG | - | chr5.3:17834234-17834253 | MS.gene69625:CDS | 55.0% | |
| GACGCAGACCAGCTGAATGA+AGG | - | chr5.3:17833194-17833213 | MS.gene69625:intron | 55.0% | |
| GATGCAGTGCAGTTGGATCC+AGG | - | chr5.3:17833329-17833348 | MS.gene69625:intron | 55.0% | |
| GTGAGCTTAGCTCAGCTGGT+TGG | + | chr5.3:17833730-17833749 | None:intergenic | 55.0% | |
| TGCACGTGAGGAATGTCGCA+AGG | - | chr5.3:17834405-17834424 | MS.gene69625:intron | 55.0% | |
| ! | GCATCTGGATGTAGGGCATC+TGG | - | chr5.3:17833262-17833281 | MS.gene69625:intron | 55.0% |
| ! | TGATGCTCGAGTTGCACGTG+AGG | - | chr5.3:17834393-17834412 | MS.gene69625:intron | 55.0% |
| !! | ATGGTAAAGCGCTGCAAGCC+AGG | - | chr5.3:17834261-17834280 | MS.gene69625:CDS | 55.0% |
| !!! | CCTCTTTTTGGTAGTGGCCG+GGG | - | chr5.3:17833668-17833687 | MS.gene69625:intron | 55.0% |
| AAGGTCCGGGGTTCAAACCC+CGG | + | chr5.3:17833688-17833707 | None:intergenic | 60.0% | |
| ATGCGATTGCTGGGTCAGGG+AGG | + | chr5.3:17834292-17834311 | None:intergenic | 60.0% | |
| ATGTAGGGCAGCCGGATGCA+CGG | - | chr5.3:17833285-17833304 | MS.gene69625:intron | 60.0% | |
| CCAGCTGAGCTAAGCTCACG+AGG | - | chr5.3:17833731-17833750 | MS.gene69625:intron | 60.0% | |
| CCCCGGCCACTACCAAAAAG+AGG | + | chr5.3:17833671-17833690 | None:intergenic | 60.0% | |
| CCGACTCCCCTTCATTCAGC+TGG | + | chr5.3:17833205-17833224 | None:intergenic | 60.0% | |
| CCTCGTGAGCTTAGCTCAGC+TGG | + | chr5.3:17833734-17833753 | None:intergenic | 60.0% | |
| GATGCACGGCAGTCGGATAC+AGG | - | chr5.3:17833299-17833318 | MS.gene69625:intron | 60.0% | |
| GATGCAGGGCAGCTGGATAC+AGG | - | chr5.3:17833239-17833258 | MS.gene69625:intron | 60.0% | |
| GATGCAGGGGAGCAAGATGC+AGG | - | chr5.3:17833224-17833243 | MS.gene69625:intron | 60.0% | |
| GCATCTGGATGTAGGGCAGC+CGG | - | chr5.3:17833277-17833296 | MS.gene69625:intron | 60.0% | |
| GTATCCGACTGCCGTGCATC+CGG | + | chr5.3:17833299-17833318 | None:intergenic | 60.0% | |
| TGAAGGGGAGTCGGATGCAG+GGG | - | chr5.3:17833211-17833230 | MS.gene69625:intron | 60.0% | |
| TGCCGGGATTGCTGCACAGA+TGG | - | chr5.3:17834338-17834357 | MS.gene69625:intron | 60.0% | |
| TGGGTCAGGGAGGATACACC+TGG | + | chr5.3:17834282-17834301 | None:intergenic | 60.0% | |
| ! | GCAGCTGGATACAGGGCATC+TGG | - | chr5.3:17833247-17833266 | MS.gene69625:intron | 60.0% |
| AGTGGCCGGGGTTTGAACCC+CGG | - | chr5.3:17833680-17833699 | MS.gene69625:intron | 65.0% | |
| GGAGCAAGATGCAGGGCAGC+TGG | - | chr5.3:17833232-17833251 | MS.gene69625:intron | 65.0% | |
| TGGTCTGCGTCCCTCTGCCA+TGG | + | chr5.3:17833185-17833204 | None:intergenic | 65.0% | |
| GCAGCCGGATGCACGGCAGT+CGG | - | chr5.3:17833292-17833311 | MS.gene69625:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 17831259 | 17834504 | 17831259 | ID=MS.gene69625 |
| chr5.3 | mRNA | 17831259 | 17834504 | 17831259 | ID=MS.gene69625.t1;Parent=MS.gene69625 |
| chr5.3 | exon | 17834487 | 17834504 | 17834487 | ID=MS.gene69625.t1.exon1;Parent=MS.gene69625.t1 |
| chr5.3 | CDS | 17834487 | 17834504 | 17834487 | ID=cds.MS.gene69625.t1;Parent=MS.gene69625.t1 |
| chr5.3 | exon | 17834188 | 17834283 | 17834188 | ID=MS.gene69625.t1.exon2;Parent=MS.gene69625.t1 |
| chr5.3 | CDS | 17834188 | 17834283 | 17834188 | ID=cds.MS.gene69625.t1;Parent=MS.gene69625.t1 |
| chr5.3 | exon | 17833926 | 17834084 | 17833926 | ID=MS.gene69625.t1.exon3;Parent=MS.gene69625.t1 |
| chr5.3 | CDS | 17833926 | 17834084 | 17833926 | ID=cds.MS.gene69625.t1;Parent=MS.gene69625.t1 |
| chr5.3 | exon | 17832401 | 17832725 | 17832401 | ID=MS.gene69625.t1.exon4;Parent=MS.gene69625.t1 |
| chr5.3 | CDS | 17832401 | 17832725 | 17832401 | ID=cds.MS.gene69625.t1;Parent=MS.gene69625.t1 |
| chr5.3 | exon | 17831479 | 17831630 | 17831479 | ID=MS.gene69625.t1.exon5;Parent=MS.gene69625.t1 |
| chr5.3 | CDS | 17831479 | 17831630 | 17831479 | ID=cds.MS.gene69625.t1;Parent=MS.gene69625.t1 |
| chr5.3 | exon | 17831259 | 17831390 | 17831259 | ID=MS.gene69625.t1.exon6;Parent=MS.gene69625.t1 |
| chr5.3 | CDS | 17831259 | 17831390 | 17831259 | ID=cds.MS.gene69625.t1;Parent=MS.gene69625.t1 |
| Gene Sequence |
| Protein sequence |
