Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69651.t1 | XP_013445985.1 | 95.7 | 231 | 10 | 0 | 1 | 231 | 1 | 231 | 1.80E-121 | 445.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69651.t1 | P27141 | 70.7 | 232 | 66 | 2 | 1 | 230 | 65 | 296 | 6.7e-88 | 325.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69651.t1 | A0A072TRI7 | 95.7 | 231 | 10 | 0 | 1 | 231 | 1 | 231 | 1.3e-121 | 445.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene060087 | MS.gene69651 | 0.803027 | 4.24E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69651.t1 | MTR_8g064630 | 95.259 | 232 | 11 | 0 | 1 | 232 | 1 | 232 | 3.22e-164 | 457 |
| MS.gene69651.t1 | MTR_5g034250 | 79.828 | 233 | 46 | 1 | 1 | 232 | 1 | 233 | 1.65e-138 | 392 |
| MS.gene69651.t1 | MTR_5g034250 | 79.828 | 233 | 46 | 1 | 1 | 232 | 23 | 255 | 3.76e-138 | 392 |
| MS.gene69651.t1 | MTR_6g006990 | 65.106 | 235 | 76 | 2 | 3 | 231 | 2 | 236 | 1.65e-106 | 311 |
| MS.gene69651.t1 | MTR_6g006990 | 65.385 | 234 | 75 | 2 | 3 | 230 | 73 | 306 | 3.19e-106 | 313 |
| MS.gene69651.t1 | MTR_8g064630 | 94.079 | 152 | 9 | 0 | 81 | 232 | 6 | 157 | 1.24e-103 | 301 |
| MS.gene69651.t1 | MTR_6g006990 | 62.927 | 205 | 70 | 2 | 3 | 201 | 73 | 277 | 9.11e-88 | 264 |
| MS.gene69651.t1 | MTR_3g077910 | 57.759 | 232 | 96 | 2 | 1 | 230 | 33 | 264 | 2.84e-85 | 258 |
| MS.gene69651.t1 | MTR_3g077940 | 56.466 | 232 | 99 | 2 | 1 | 230 | 1 | 232 | 4.54e-83 | 251 |
| MS.gene69651.t1 | MTR_3g077940 | 60.843 | 166 | 64 | 1 | 66 | 230 | 28 | 193 | 4.06e-65 | 204 |
| MS.gene69651.t1 | MTR_2g009500 | 39.841 | 251 | 127 | 4 | 1 | 230 | 18 | 265 | 2.85e-57 | 187 |
| MS.gene69651.t1 | MTR_5g066060 | 47.222 | 180 | 92 | 3 | 52 | 230 | 94 | 271 | 4.26e-49 | 166 |
| MS.gene69651.t1 | MTR_5g066060 | 47.403 | 154 | 78 | 3 | 52 | 204 | 94 | 245 | 9.40e-39 | 137 |
| MS.gene69651.t1 | MTR_3g077930 | 49.333 | 150 | 52 | 4 | 82 | 230 | 40 | 166 | 7.05e-32 | 118 |
| MS.gene69651.t1 | MTR_5g066060 | 46.939 | 98 | 44 | 2 | 52 | 149 | 94 | 183 | 1.70e-22 | 92.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69651.t1 | AT5G14740 | 69.658 | 234 | 67 | 2 | 1 | 230 | 1 | 234 | 1.08e-112 | 327 |
| MS.gene69651.t1 | AT5G14740 | 69.658 | 234 | 67 | 2 | 1 | 230 | 1 | 234 | 1.08e-112 | 327 |
| MS.gene69651.t1 | AT5G14740 | 69.658 | 234 | 67 | 2 | 1 | 230 | 1 | 234 | 1.08e-112 | 327 |
| MS.gene69651.t1 | AT5G14740 | 69.658 | 234 | 67 | 2 | 1 | 230 | 1 | 234 | 1.08e-112 | 327 |
| MS.gene69651.t1 | AT5G14740 | 69.658 | 234 | 67 | 2 | 1 | 230 | 1 | 234 | 1.08e-112 | 327 |
| MS.gene69651.t1 | AT5G14740 | 69.658 | 234 | 67 | 2 | 1 | 230 | 73 | 306 | 1.05e-111 | 327 |
| MS.gene69651.t1 | AT5G14740 | 69.231 | 234 | 67 | 3 | 1 | 230 | 73 | 305 | 3.09e-109 | 321 |
| MS.gene69651.t1 | AT1G70410 | 67.094 | 234 | 75 | 2 | 1 | 232 | 1 | 234 | 5.24e-109 | 317 |
| MS.gene69651.t1 | AT1G70410 | 67.094 | 234 | 75 | 2 | 1 | 232 | 1 | 234 | 5.24e-109 | 317 |
| MS.gene69651.t1 | AT3G01500 | 67.234 | 235 | 73 | 3 | 1 | 231 | 1 | 235 | 3.14e-108 | 315 |
| MS.gene69651.t1 | AT3G01500 | 67.234 | 235 | 73 | 3 | 1 | 231 | 1 | 235 | 3.56e-108 | 316 |
| MS.gene69651.t1 | AT5G14740 | 68.376 | 234 | 69 | 3 | 1 | 230 | 73 | 305 | 3.70e-108 | 318 |
| MS.gene69651.t1 | AT1G70410 | 67.094 | 234 | 75 | 2 | 1 | 232 | 23 | 256 | 3.73e-108 | 316 |
| MS.gene69651.t1 | AT3G01500 | 67.521 | 234 | 72 | 3 | 1 | 230 | 78 | 311 | 3.17e-107 | 316 |
| MS.gene69651.t1 | AT3G01500 | 67.521 | 234 | 72 | 3 | 1 | 230 | 78 | 311 | 3.62e-107 | 316 |
| MS.gene69651.t1 | AT1G23730 | 62.821 | 234 | 85 | 2 | 1 | 232 | 1 | 234 | 7.37e-106 | 310 |
| MS.gene69651.t1 | AT1G23730 | 62.821 | 234 | 85 | 2 | 1 | 232 | 1 | 234 | 7.37e-106 | 310 |
| MS.gene69651.t1 | AT5G14740 | 67.805 | 205 | 62 | 2 | 1 | 201 | 73 | 277 | 1.53e-93 | 280 |
| MS.gene69651.t1 | AT4G33580 | 46.890 | 209 | 105 | 4 | 26 | 230 | 56 | 262 | 6.45e-53 | 176 |
| MS.gene69651.t1 | AT4G33580 | 46.890 | 209 | 105 | 4 | 26 | 230 | 56 | 262 | 6.45e-53 | 176 |
| MS.gene69651.t1 | AT4G33580 | 46.667 | 210 | 105 | 5 | 26 | 230 | 56 | 263 | 8.85e-52 | 173 |
| MS.gene69651.t1 | AT1G58180 | 38.961 | 231 | 137 | 3 | 1 | 230 | 30 | 257 | 6.53e-51 | 170 |
| MS.gene69651.t1 | AT1G58180 | 38.961 | 231 | 137 | 3 | 1 | 230 | 30 | 257 | 6.53e-51 | 170 |
| MS.gene69651.t1 | AT1G58180 | 44.920 | 187 | 101 | 2 | 45 | 230 | 21 | 206 | 9.31e-51 | 168 |
| MS.gene69651.t1 | AT1G58180 | 44.920 | 187 | 101 | 2 | 45 | 230 | 21 | 206 | 9.31e-51 | 168 |
| MS.gene69651.t1 | AT1G58180 | 44.920 | 187 | 101 | 2 | 45 | 230 | 21 | 206 | 9.31e-51 | 168 |
| MS.gene69651.t1 | AT1G58180 | 40.090 | 222 | 129 | 3 | 1 | 221 | 30 | 248 | 1.01e-50 | 169 |
| MS.gene69651.t1 | AT1G58180 | 39.604 | 202 | 118 | 3 | 1 | 201 | 30 | 228 | 2.04e-42 | 148 |
Find 89 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTTGCTGGATTACAAATT+TGG | 0.136366 | 8.3:-37546320 | None:intergenic |
| TCACAAGCTTCAACTGATTT+TGG | 0.186288 | 8.3:+37547726 | MS.gene69651:CDS |
| ATATGCAGTCGTACATTTAA+AGG | 0.224599 | 8.3:+37544586 | MS.gene69651:CDS |
| GACCTTTGGGCTCTGGCCTT+TGG | 0.228178 | 8.3:-37539785 | None:intergenic |
| TCTTTAACTTTGGCCTTTGC+TGG | 0.230610 | 8.3:-37546333 | None:intergenic |
| GTGGAGAATATTGTGGTTAT+TGG | 0.232163 | 8.3:+37545771 | MS.gene69651:CDS |
| CAGAGTTGACGAAGCTTCTA+AGG | 0.294082 | 8.3:+37537074 | MS.gene69651:CDS |
| AGGAACTCAACCCTCGATTC+TGG | 0.311017 | 8.3:+37548030 | MS.gene69651:CDS |
| CAGTTGCTGTGGAGGTATAA+AGG | 0.311502 | 8.3:+37545797 | MS.gene69651:CDS |
| CTTGCAGTGGTCCCATCATC+TGG | 0.312806 | 8.3:-37545834 | None:intergenic |
| CAGAGCAAGTATTCAGGAAC+TGG | 0.335749 | 8.3:+37544551 | MS.gene69651:intron |
| GGTCATGGTAGATGTGTTAC+AGG | 0.343404 | 8.3:-37548103 | None:intergenic |
| TTTGCATGCTTCTTTAACTT+TGG | 0.354226 | 8.3:-37546343 | None:intergenic |
| GCAAGTTCACCATACACTTC+TGG | 0.358514 | 8.3:-37539763 | None:intergenic |
| TCAACCTGGTGAAGCCTTTG+TGG | 0.374370 | 8.3:+37544352 | MS.gene69651:CDS |
| CTCTGAGCAGTGTTCCAACT+TGG | 0.383335 | 8.3:+37546374 | MS.gene69651:CDS |
| TAACTGCAGAGCAAGTATTC+AGG | 0.392076 | 8.3:+37544545 | MS.gene69651:intron |
| AATTAATTAACCTTGTCATA+TGG | 0.395386 | 8.3:-37544401 | None:intergenic |
| GGAAGCTGTTAATGTCTCTC+TGG | 0.396743 | 8.3:+37547102 | MS.gene69651:intron |
| CCACTTCGAATTCTTTCATC+CGG | 0.397203 | 8.3:-37538119 | None:intergenic |
| CATGGCTGACCTTTGGGCTC+TGG | 0.414761 | 8.3:-37539792 | None:intergenic |
| AGATGTGTTACAGGGTTATT+CGG | 0.420681 | 8.3:-37548094 | None:intergenic |
| TGGTTCCTTGTACACCTTGT+TGG | 0.426235 | 8.3:-37547763 | None:intergenic |
| TTATCCGTAGCTTCTGCATT+GGG | 0.430006 | 8.3:-37548057 | None:intergenic |
| AGTTGCTGTGGAGGTATAAA+GGG | 0.452052 | 8.3:+37545798 | MS.gene69651:CDS |
| TACGCCTGCAGTCCAGTAGA+AGG | 0.454223 | 8.3:+37548010 | MS.gene69651:CDS |
| CTCATGTCCATCCCAGATGA+TGG | 0.457493 | 8.3:+37545822 | MS.gene69651:CDS |
| GAGGGTTGAGTTCCTTCTAC+TGG | 0.467282 | 8.3:-37548022 | None:intergenic |
| CTTATCCGTAGCTTCTGCAT+TGG | 0.475704 | 8.3:-37548058 | None:intergenic |
| ACAACAGCATCTCTTACAAA+TGG | 0.482177 | 8.3:-37547142 | None:intergenic |
| CGACGGAGCTGGTTGCTGTC+GGG | 0.495613 | 8.3:+37538081 | MS.gene69651:CDS |
| CGTCAACTGCTTGATCTTTG+CGG | 0.498396 | 8.3:-37538060 | None:intergenic |
| ACGACGGAGCTGGTTGCTGT+CGG | 0.498766 | 8.3:+37538080 | MS.gene69651:CDS |
| GAACTATGTTGGCAATGTTA+CGG | 0.502088 | 8.3:-37544376 | None:intergenic |
| ACCTTATGGCAGTACTATGC+AGG | 0.507666 | 8.3:+37547961 | MS.gene69651:intron |
| CACTTCGAATTCTTTCATCC+GGG | 0.509838 | 8.3:-37538118 | None:intergenic |
| CAGGTTGAAAATTTAGAACA+TGG | 0.510353 | 8.3:-37544337 | None:intergenic |
| AGTTCCTTCTACTGGACTGC+AGG | 0.513859 | 8.3:-37548014 | None:intergenic |
| TATACTTGCCTTCTCCAAGT+TGG | 0.518585 | 8.3:-37546388 | None:intergenic |
| GTTACAGGGTTATTCGGTCC+AGG | 0.521957 | 8.3:-37548088 | None:intergenic |
| TGAAAATTTAGAACATGGGA+TGG | 0.524270 | 8.3:-37544332 | None:intergenic |
| TGCAGCGAGAAAGCTGATCT+CGG | 0.524567 | 8.3:+37538026 | MS.gene69651:intron |
| GAAGCTGTTAATGTCTCTCT+GGG | 0.527741 | 8.3:+37547103 | MS.gene69651:CDS |
| AGACCAATCGAGTATTGAAT+CGG | 0.532010 | 8.3:+37547811 | MS.gene69651:CDS |
| CAAGCAGTTGACGACGGAGC+TGG | 0.534939 | 8.3:+37538070 | MS.gene69651:CDS |
| TTGCAGTGGTCCCATCATCT+GGG | 0.535229 | 8.3:-37545833 | None:intergenic |
| AGTCACCAACAAGGTGTACA+AGG | 0.541947 | 8.3:+37547758 | MS.gene69651:CDS |
| TAATTAACCTTGTCATATGG+TGG | 0.548923 | 8.3:-37544398 | None:intergenic |
| CTACCGATTCAATACTCGAT+TGG | 0.550335 | 8.3:-37547814 | None:intergenic |
| GAAAATTTAGAACATGGGAT+GGG | 0.561077 | 8.3:-37544331 | None:intergenic |
| CGGACCACAAAGGCTTCACC+AGG | 0.568237 | 8.3:-37544356 | None:intergenic |
| TTTCGCATGCTCAGACTCAA+GGG | 0.569752 | 8.3:+37544304 | MS.gene69651:CDS |
| ATTGGACACAGTTGCTGTGG+AGG | 0.570748 | 8.3:+37545789 | MS.gene69651:CDS |
| TCATGTCCATCCCAGATGAT+GGG | 0.574366 | 8.3:+37545823 | MS.gene69651:CDS |
| ATTACAGGTGGAGAATATTG+TGG | 0.574732 | 8.3:+37545764 | MS.gene69651:intron |
| GTGTAGAAGGTTGACATGGC+AGG | 0.582027 | 8.3:+37537028 | None:intergenic |
| GTCATATGGTGGAACTATGT+TGG | 0.590279 | 8.3:-37544387 | None:intergenic |
| CAGTGACTTCATAGAGCAGT+GGG | 0.594973 | 8.3:+37546296 | MS.gene69651:intron |
| CCAAATTTGTAATCCAGCAA+AGG | 0.600518 | 8.3:+37546320 | MS.gene69651:CDS |
| GTTATTGGACACAGTTGCTG+TGG | 0.600992 | 8.3:+37545786 | MS.gene69651:CDS |
| GCAGTGTTCCAACTTGGAGA+AGG | 0.602714 | 8.3:+37546380 | MS.gene69651:CDS |
| AAGAAAACGATTGCTTTGAA+AGG | 0.606815 | 8.3:+37547166 | MS.gene69651:CDS |
| GGAGCTGGTTGCTGTCGGGT+CGG | 0.611008 | 8.3:+37538085 | MS.gene69651:CDS |
| AAGCTTCGTCAACTCTGCAA+TGG | 0.612847 | 8.3:-37537068 | None:intergenic |
| TATAGACTTATACCTTGCAG+TGG | 0.613690 | 8.3:-37545847 | None:intergenic |
| ATTACCCAATGCAGAAGCTA+CGG | 0.616248 | 8.3:+37548053 | MS.gene69651:CDS |
| AGAGCAAGTATTCAGGAACT+GGG | 0.621056 | 8.3:+37544552 | MS.gene69651:intron |
| CAGATGATGGGACCACTGCA+AGG | 0.623424 | 8.3:+37545835 | MS.gene69651:CDS |
| AGGTTGAAAATTTAGAACAT+GGG | 0.629087 | 8.3:-37544336 | None:intergenic |
| CATAGTTCCACCATATGACA+AGG | 0.634483 | 8.3:+37544391 | MS.gene69651:CDS |
| CATTGGGTAATCCAGAATCG+AGG | 0.638194 | 8.3:-37548041 | None:intergenic |
| TGCCAAAGGCCAGAGCCCAA+AGG | 0.639324 | 8.3:+37539783 | MS.gene69651:CDS |
| AGTGGTCCCATCATCTGGGA+TGG | 0.640032 | 8.3:-37545829 | None:intergenic |
| ACAGTGACTTCATAGAGCAG+TGG | 0.642596 | 8.3:+37546295 | MS.gene69651:intron |
| ATTGGGTAATCCAGAATCGA+GGG | 0.643815 | 8.3:-37548040 | None:intergenic |
| CGGATGAAAGAATTCGAAGT+GGG | 0.644322 | 8.3:+37538120 | MS.gene69651:CDS |
| CGGGTCGGATAGTTTCGACC+CGG | 0.645912 | 8.3:+37538100 | MS.gene69651:CDS |
| GTGTATGGTGAACTTGCCAA+AGG | 0.654902 | 8.3:+37539769 | MS.gene69651:CDS |
| GGCAATGTTACGGACCACAA+AGG | 0.658911 | 8.3:-37544366 | None:intergenic |
| TGACAATTCAGTCACCAACA+AGG | 0.682070 | 8.3:+37547749 | MS.gene69651:CDS |
| AAAGATCAAGCAGTTGACGA+CGG | 0.688194 | 8.3:+37538064 | MS.gene69651:CDS |
| GGCAGGAGAGTCATACGAGG+AGG | 0.691865 | 8.3:+37537045 | MS.gene69651:CDS |
| ACAGGGTTATTCGGTCCAGG+TGG | 0.692124 | 8.3:-37548085 | None:intergenic |
| CAACTGCTTGATCTTTGCGG+CGG | 0.692624 | 8.3:-37538057 | None:intergenic |
| CCGGATGAAAGAATTCGAAG+TGG | 0.695864 | 8.3:+37538119 | MS.gene69651:CDS |
| GTCATGGTAGATGTGTTACA+GGG | 0.702588 | 8.3:-37548102 | None:intergenic |
| GAGCAAGTATTCAGGAACTG+GGG | 0.716151 | 8.3:+37544553 | MS.gene69651:intron |
| CATGGCAGGAGAGTCATACG+AGG | 0.757723 | 8.3:+37537042 | None:intergenic |
| AAGCTGTTAATGTCTCTCTG+GGG | 0.771215 | 8.3:+37547104 | MS.gene69651:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 37537043 | 37548123 | 37537043 | ID=MS.gene69651 |
| chr8.3 | mRNA | 37537043 | 37548123 | 37537043 | ID=MS.gene69651.t1;Parent=MS.gene69651 |
| chr8.3 | exon | 37537043 | 37537095 | 37537043 | ID=MS.gene69651.t1.exon1;Parent=MS.gene69651.t1 |
| chr8.3 | CDS | 37537043 | 37537095 | 37537043 | ID=cds.MS.gene69651.t1;Parent=MS.gene69651.t1 |
| chr8.3 | exon | 37538031 | 37538171 | 37538031 | ID=MS.gene69651.t1.exon2;Parent=MS.gene69651.t1 |
| chr8.3 | CDS | 37538031 | 37538171 | 37538031 | ID=cds.MS.gene69651.t1;Parent=MS.gene69651.t1 |
| chr8.3 | exon | 37539756 | 37539804 | 37539756 | ID=MS.gene69651.t1.exon3;Parent=MS.gene69651.t1 |
| chr8.3 | CDS | 37539756 | 37539804 | 37539756 | ID=cds.MS.gene69651.t1;Parent=MS.gene69651.t1 |
| chr8.3 | exon | 37544296 | 37544412 | 37544296 | ID=MS.gene69651.t1.exon4;Parent=MS.gene69651.t1 |
| chr8.3 | CDS | 37544296 | 37544412 | 37544296 | ID=cds.MS.gene69651.t1;Parent=MS.gene69651.t1 |
| chr8.3 | exon | 37544554 | 37544607 | 37544554 | ID=MS.gene69651.t1.exon5;Parent=MS.gene69651.t1 |
| chr8.3 | CDS | 37544554 | 37544607 | 37544554 | ID=cds.MS.gene69651.t1;Parent=MS.gene69651.t1 |
| chr8.3 | exon | 37545771 | 37545856 | 37545771 | ID=MS.gene69651.t1.exon6;Parent=MS.gene69651.t1 |
| chr8.3 | CDS | 37545771 | 37545856 | 37545771 | ID=cds.MS.gene69651.t1;Parent=MS.gene69651.t1 |
| chr8.3 | exon | 37546299 | 37546401 | 37546299 | ID=MS.gene69651.t1.exon7;Parent=MS.gene69651.t1 |
| chr8.3 | CDS | 37546299 | 37546401 | 37546299 | ID=cds.MS.gene69651.t1;Parent=MS.gene69651.t1 |
| chr8.3 | exon | 37547103 | 37547187 | 37547103 | ID=MS.gene69651.t1.exon8;Parent=MS.gene69651.t1 |
| chr8.3 | CDS | 37547103 | 37547187 | 37547103 | ID=cds.MS.gene69651.t1;Parent=MS.gene69651.t1 |
| chr8.3 | exon | 37547724 | 37547832 | 37547724 | ID=MS.gene69651.t1.exon9;Parent=MS.gene69651.t1 |
| chr8.3 | CDS | 37547724 | 37547832 | 37547724 | ID=cds.MS.gene69651.t1;Parent=MS.gene69651.t1 |
| chr8.3 | exon | 37547973 | 37548123 | 37547973 | ID=MS.gene69651.t1.exon10;Parent=MS.gene69651.t1 |
| chr8.3 | CDS | 37547973 | 37548123 | 37547973 | ID=cds.MS.gene69651.t1;Parent=MS.gene69651.t1 |
| Gene Sequence |
| Protein sequence |