AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene69851

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene69851.t1 MTR_2g083650 53.380 429 141 8 1 375 762 1185 4.66e-122 380
MS.gene69851.t1 MTR_2g083620 47.607 397 138 11 41 368 1 396 1.27e-93 286
MS.gene69851.t1 MTR_7g069090 43.925 428 159 12 9 375 1 408 2.62e-93 289
MS.gene69851.t1 MTR_5g005550 45.205 438 151 12 1 375 711 1122 4.07e-93 301
MS.gene69851.t1 MTR_7g069120 45.388 412 162 11 1 375 751 1136 7.50e-91 295
MS.gene69851.t1 MTR_7g069580 44.811 424 163 11 1 375 376 777 2.67e-88 283
MS.gene69851.t1 MTR_7g069580 44.340 424 165 11 1 375 702 1103 9.27e-87 284
MS.gene69851.t1 MTR_7g069160 42.316 449 161 10 1 375 811 1235 5.25e-85 280
MS.gene69851.t1 MTR_7g069160 42.316 449 161 10 1 375 809 1233 6.14e-85 280
MS.gene69851.t1 MTR_7g069160 42.316 449 161 10 1 375 803 1227 6.53e-85 280
MS.gene69851.t1 MTR_2g083510 47.674 344 111 10 4 279 593 935 9.71e-85 276
MS.gene69851.t1 MTR_7g069180 42.584 418 152 11 1 375 755 1127 1.27e-79 265
MS.gene69851.t1 MTR_2g083520 41.422 408 159 11 1 350 766 1151 2.16e-76 256
MS.gene69851.t1 MTR_2g083520 38.000 150 83 5 4 148 695 839 1.08e-12 70.1
MS.gene69851.t1 MTR_2g083520 41.422 408 159 11 1 350 855 1240 3.66e-76 256
MS.gene69851.t1 MTR_2g083520 38.000 150 83 5 4 148 784 928 8.15e-13 70.5
MS.gene69851.t1 MTR_2g083560 41.485 229 105 6 150 375 23 225 1.37e-41 145
MS.gene69851.t1 MTR_7g069160 57.718 149 61 2 1 149 803 949 1.46e-41 156
MS.gene69851.t1 MTR_4g081270 31.529 314 151 11 1 266 755 1052 9.70e-25 106
MS.gene69851.t1 MTR_6g088245 28.493 365 183 11 1 306 658 1003 1.26e-24 106
MS.gene69851.t1 MTR_6g088465 30.029 343 179 11 1 294 658 988 5.07e-24 104
MS.gene69851.t1 MTR_6g088250 32.787 305 142 12 4 266 682 965 2.55e-23 102
MS.gene69851.t1 MTR_1408s0010 29.310 348 153 12 1 266 107 443 2.90e-23 101
MS.gene69851.t1 MTR_6g088250 32.787 305 142 12 4 266 682 965 2.98e-23 102
MS.gene69851.t1 MTR_6g088250 32.787 305 142 12 4 266 682 965 3.10e-23 102
MS.gene69851.t1 MTR_0428s0030 28.061 392 178 14 1 299 663 1043 7.79e-23 100
MS.gene69851.t1 MTR_6g087850 29.107 347 160 12 1 270 658 995 4.77e-22 98.6
MS.gene69851.t1 MTR_4g081250 30.100 299 165 8 1 266 650 937 1.68e-21 97.1
MS.gene69851.t1 MTR_6g084360 29.006 362 180 11 1 296 514 864 4.93e-21 95.5
MS.gene69851.t1 MTR_6g488300 29.296 355 154 11 1 270 654 996 1.07e-20 94.7
MS.gene69851.t1 MTR_6g088260 28.190 337 163 12 1 266 646 974 1.18e-20 94.4
MS.gene69851.t1 MTR_6g087260 29.462 353 141 12 1 266 655 986 1.37e-20 94.4
MS.gene69851.t1 MTR_4g080070 27.731 357 174 13 1 283 659 1005 1.41e-20 94.4
MS.gene69851.t1 MTR_6g088260 28.190 337 163 12 1 266 646 974 1.70e-20 94.0
MS.gene69851.t1 MTR_6g087200 27.826 345 149 11 1 266 655 978 3.00e-20 93.2
MS.gene69851.t1 MTR_6g087200 27.826 345 149 11 1 266 655 978 3.12e-20 93.2
MS.gene69851.t1 MTR_4g080330 28.783 337 161 11 1 263 645 976 5.22e-20 92.4
MS.gene69851.t1 MTR_4g081280 33.333 237 128 8 1 211 624 856 1.49e-19 90.9
MS.gene69851.t1 MTR_4g081330 27.479 353 162 10 1 266 662 1007 1.69e-19 90.9
MS.gene69851.t1 MTR_2g039770 27.479 353 177 10 1 281 656 1001 7.26e-18 85.9
MS.gene69851.t1 MTR_4g080777 27.467 375 169 15 1 277 466 835 1.60e-17 84.7
MS.gene69851.t1 MTR_4g080777 27.467 375 169 15 1 277 745 1114 1.95e-17 84.7
MS.gene69851.t1 MTR_6g088190 39.286 140 75 2 13 152 419 548 1.48e-16 81.6
MS.gene69851.t1 MTR_6g087320 30.303 330 151 14 1 266 656 970 2.46e-16 81.3
MS.gene69851.t1 MTR_6g038090 33.696 184 72 2 4 137 645 828 1.16e-15 79.3
MS.gene69851.t1 MTR_2g083790 52.273 88 34 1 288 375 1 80 2.66e-15 70.9
MS.gene69851.t1 MTR_4g080060 25.994 327 158 9 15 264 450 769 1.51e-14 75.9
MS.gene69851.t1 MTR_4g080060 25.994 327 158 9 15 264 649 968 1.77e-14 75.5
MS.gene69851.t1 MTR_4g081230 25.077 323 177 11 1 263 656 973 1.00e-12 70.1
MS.gene69851.t1 MTR_8g020300 32.847 137 84 2 1 137 696 824 3.13e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene69851.t1 AT1G69550 41.221 131 70 4 1 129 1035 1160 1.21e-12 70.1
MS.gene69851.t1 AT1G69550 37.748 151 72 4 1 129 939 1089 1.67e-11 66.6
MS.gene69851.t1 AT5G17880 37.692 130 71 4 1 129 690 810 2.95e-12 68.9
MS.gene69851.t1 AT5G17880 37.692 130 71 4 1 129 690 810 2.98e-12 68.9
MS.gene69851.t1 AT1G27170 32.667 150 82 2 2 132 701 850 1.15e-11 67.0
MS.gene69851.t1 AT1G27170 32.667 150 82 2 2 132 701 850 1.17e-11 67.0
MS.gene69851.t1 AT5G45230 33.835 133 83 2 5 136 758 886 6.50e-11 64.7

Find 73 sgRNAs with CRISPR-Local

Find 113 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGGAGTCTTTGATTTCTC+TGG 0.276713 2.2:+13709466 MS.gene69851:CDS
AATCAAAGCTATTTCCTTGT+AGG 0.292086 2.2:-13709559 None:intergenic
AGAAATCGAACTTTATAATC+TGG 0.306239 2.2:+13710732 MS.gene69851:CDS
CCCAATGGATTCATGAACTA+TGG 0.306636 2.2:-13709285 None:intergenic
CTTTCAAAAGAAAGATAAAA+AGG 0.310318 2.2:-13710316 None:intergenic
CGCAAAATGGCAATGGAAAC+GGG 0.331308 2.2:-13710428 None:intergenic
CCAGTATCCCAGGTGCATTC+CGG 0.346362 2.2:+13710087 MS.gene69851:intron
CAGTATCCCAGGTGCATTCC+GGG 0.347852 2.2:+13710088 MS.gene69851:intron
TTCGGGAGAAAGTGATTCTT+CGG 0.351055 2.2:+13709685 MS.gene69851:CDS
GACTTTCCATGATTCTCATT+TGG 0.355593 2.2:+13709448 MS.gene69851:CDS
TATGCCACTTAGTTTGAAAC+TGG 0.368292 2.2:+13710363 MS.gene69851:CDS
TTCTGCGTGGTATTTGAAAA+TGG 0.372061 2.2:+13710241 MS.gene69851:CDS
CATTTCTTTATGATCAAACT+AGG 0.380935 2.2:-13710484 None:intergenic
CTGTGACATTGTTGTTCCTT+GGG 0.381105 2.2:+13710114 MS.gene69851:CDS
ATAGATTAGCCACAGATGTT+TGG 0.384239 2.2:-13710401 None:intergenic
CATGAAGTACCTGCTGCTAT+TGG 0.387041 2.2:+13709509 MS.gene69851:CDS
CTTCTCATGACATATTGAAT+TGG 0.387272 2.2:+13710569 MS.gene69851:CDS
CCATAGTTCATGAATCCATT+GGG 0.387430 2.2:+13709285 MS.gene69851:CDS
CTAGTTTGATCATAAAGAAA+TGG 0.397514 2.2:+13710485 MS.gene69851:CDS
CAAGAAAGCAGCAGCCGGTC+TGG 0.397621 2.2:+13710634 MS.gene69851:CDS
AAATATCTAATAACATCAAT+AGG 0.397900 2.2:+13709360 MS.gene69851:CDS
GCTGTGACATTGTTGTTCCT+TGG 0.398132 2.2:+13710113 MS.gene69851:CDS
TAGTTTGATCATAAAGAAAT+GGG 0.404642 2.2:+13710486 MS.gene69851:CDS
TGGTTCAAGTACCGATTTGA+TGG 0.410808 2.2:+13710157 MS.gene69851:CDS
TCAAGAGGATTGATTTCATA+AGG 0.412227 2.2:-13709587 None:intergenic
GTTGATAACCGACCAATTGT+AGG 0.421387 2.2:-13710674 None:intergenic
TCGCAAAATGGCAATGGAAA+CGG 0.426771 2.2:-13710429 None:intergenic
CTCTCAAACTCAAGAATGTA+AGG 0.426965 2.2:-13709319 None:intergenic
CGGGATCTCGTCATGACTAT+AGG 0.427159 2.2:+13709705 MS.gene69851:CDS
TCGGGAGAAAGTGATTCTTC+GGG 0.427852 2.2:+13709686 MS.gene69851:CDS
TTGAAACTGGACAAAGTTGA+TGG 0.428244 2.2:+13710376 MS.gene69851:CDS
TGTAGAGAAACAGAATTTGC+AGG 0.440281 2.2:-13710265 None:intergenic
AAATCCAGCTTCCCTACAAT+TGG 0.445746 2.2:+13710662 MS.gene69851:CDS
TCCATAGTTCATGAATCCAT+TGG 0.447381 2.2:+13709284 MS.gene69851:CDS
CTTAGAACTCTAGATTTATG+TGG 0.448317 2.2:+13709392 MS.gene69851:CDS
GAAATCGAACTTTATAATCT+GGG 0.453130 2.2:+13710733 MS.gene69851:CDS
CTTTATGATCAAACTAGGAC+AGG 0.458330 2.2:-13710479 None:intergenic
ATATTGAATTGGTTTACATA+TGG 0.469615 2.2:+13710580 MS.gene69851:CDS
GCAGGCAGTTAACAGTTTGA+AGG 0.477885 2.2:-13709646 None:intergenic
AAGACTCCAAATGAGAATCA+TGG 0.484121 2.2:-13709454 None:intergenic
TTGTCCAGTTTCAAACTAAG+TGG 0.491158 2.2:-13710367 None:intergenic
CCGACCAATTGTAGGGAAGC+TGG 0.500481 2.2:-13710666 None:intergenic
TTGATGGGGATTCAATAGTA+AGG 0.507608 2.2:+13710173 MS.gene69851:CDS
CTTACATTCTTGAGTTTGAG+AGG 0.512555 2.2:+13709320 MS.gene69851:CDS
CTATTGAATCCCCATCAAAT+CGG 0.527826 2.2:-13710168 None:intergenic
AAACTTAAAATTCTACCTCT+AGG 0.533481 2.2:+13709422 MS.gene69851:CDS
TTTAGCTCTCCAATAGCAGC+AGG 0.549094 2.2:-13709518 None:intergenic
GGTTCAAGTACCGATTTGAT+GGG 0.549499 2.2:+13710158 MS.gene69851:CDS
TCTACAAGATTCATTTACAT+CGG 0.549975 2.2:+13710282 MS.gene69851:CDS
TTGATAACCGACCAATTGTA+GGG 0.550597 2.2:-13710673 None:intergenic
TTAGAACTCTAGATTTATGT+GGG 0.554136 2.2:+13709393 MS.gene69851:CDS
CTTGTATCAAGTAATAGAAG+TGG 0.576233 2.2:-13710544 None:intergenic
AAGGTATTTAAGAACCCCAA+TGG 0.587539 2.2:-13709300 None:intergenic
GTGTACAAGAAAGCAGCAGC+CGG 0.593351 2.2:+13710629 MS.gene69851:CDS
GGTGAAGAGAATGTGTGGTT+CGG 0.598691 2.2:+13710211 MS.gene69851:CDS
AAATATGCTAGACTTTCAAG+AGG 0.608857 2.2:-13709602 None:intergenic
CCAGCTTCCCTACAATTGGT+CGG 0.618267 2.2:+13710666 MS.gene69851:CDS
TCAAATCGGTACTTGAACCA+CGG 0.622023 2.2:-13710154 None:intergenic
ACAACAATGTCACAGCTACC+CGG 0.628162 2.2:-13710106 None:intergenic
GTAAGGATAGTAACTACTGA+AGG 0.630519 2.2:+13710190 MS.gene69851:CDS
GTTCAAGTACCGATTTGATG+GGG 0.637899 2.2:+13710159 MS.gene69851:CDS
AGTTTGATCATAAAGAAATG+GGG 0.646853 2.2:+13710487 MS.gene69851:CDS
TTAGAAAGACTAAACCTACA+AGG 0.652012 2.2:+13709545 MS.gene69851:CDS
TCATGGAAAGTCTGTCCTAG+AGG 0.652782 2.2:-13709437 None:intergenic
CATAGTTCATGAATCCATTG+GGG 0.654711 2.2:+13709286 MS.gene69851:CDS
TTGATGGCTCCAAACATCTG+TGG 0.668405 2.2:+13710392 MS.gene69851:CDS
TTTGCAGAAACTAATCATGA+CGG 0.675583 2.2:+13710510 MS.gene69851:CDS
GGAGTGTCATTCGAATCCCA+AGG 0.681278 2.2:-13710130 None:intergenic
CGATCAAAGAAAATAGTGTG+AGG 0.686560 2.2:-13710607 None:intergenic
CTGAAGGTGAAGAGAATGTG+TGG 0.696908 2.2:+13710206 MS.gene69851:CDS
GTTCGGCTTTGTCTTCTGCG+TGG 0.703654 2.2:+13710228 MS.gene69851:CDS
AATCGGTACTTGAACCACGG+TGG 0.758674 2.2:-13710151 None:intergenic
ATTCGAATGACACTCCACCG+TGG 0.782931 2.2:+13710137 MS.gene69851:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATCTAATAACATCAAT+AGG + chr2.2:13709360-13709379 MS.gene69851:CDS 15.0%
!! TAAACATATAATTACCAAAA+CGG - chr2.2:13710041-13710060 None:intergenic 15.0%
!!! AATAATATGTTTTTATCTTC+TGG + chr2.2:13710062-13710081 MS.gene69851:intron 15.0%
!! AAACATATAATTACCAAAAC+GGG - chr2.2:13710040-13710059 None:intergenic 20.0%
!! CTTTCAAAAGAAAGATAAAA+AGG - chr2.2:13710319-13710338 None:intergenic 20.0%
!! TAGTTTGATCATAAAGAAAT+GGG + chr2.2:13710486-13710505 MS.gene69851:CDS 20.0%
!!! ATATTGAATTGGTTTACATA+TGG + chr2.2:13710580-13710599 MS.gene69851:CDS 20.0%
!!! TATAATATCTTTCTAGGAAT+TGG - chr2.2:13709781-13709800 None:intergenic 20.0%
! AAACTTAAAATTCTACCTCT+AGG + chr2.2:13709422-13709441 MS.gene69851:CDS 25.0%
! AAAGAAAGATAAAAAGGATG+TGG - chr2.2:13710313-13710332 None:intergenic 25.0%
! AGAAATCGAACTTTATAATC+TGG + chr2.2:13710732-13710751 MS.gene69851:CDS 25.0%
! AGTTTGATCATAAAGAAATG+GGG + chr2.2:13710487-13710506 MS.gene69851:CDS 25.0%
! ATATCAAAACTAGAGAATTG+AGG - chr2.2:13709852-13709871 None:intergenic 25.0%
! ATGGAGAAGTTATTCTATAA+TGG + chr2.2:13710011-13710030 MS.gene69851:intron 25.0%
! CATTTCTTTATGATCAAACT+AGG - chr2.2:13710487-13710506 None:intergenic 25.0%
! CTAGTTTGATCATAAAGAAA+TGG + chr2.2:13710485-13710504 MS.gene69851:CDS 25.0%
! GAAATCGAACTTTATAATCT+GGG + chr2.2:13710733-13710752 MS.gene69851:CDS 25.0%
! TCATTAATGGTGTTTCATAA+TGG + chr2.2:13709992-13710011 MS.gene69851:intron 25.0%
! TCCTAGAAAGATATTATACA+TGG + chr2.2:13709783-13709802 MS.gene69851:intron 25.0%
! TCTACAAGATTCATTTACAT+CGG + chr2.2:13710282-13710301 MS.gene69851:CDS 25.0%
! TTAGAACTCTAGATTTATGT+GGG + chr2.2:13709393-13709412 MS.gene69851:CDS 25.0%
AAAACTAGAGAATTGAGGAA+GGG - chr2.2:13709847-13709866 None:intergenic 30.0%
AAATATGCTAGACTTTCAAG+AGG - chr2.2:13709605-13709624 None:intergenic 30.0%
ATGGCTACAAGTACAATATA+AGG + chr2.2:13709802-13709821 MS.gene69851:intron 30.0%
CTTAGAACTCTAGATTTATG+TGG + chr2.2:13709392-13709411 MS.gene69851:CDS 30.0%
CTTCTCATGACATATTGAAT+TGG + chr2.2:13710569-13710588 MS.gene69851:CDS 30.0%
CTTGTATCAAGTAATAGAAG+TGG - chr2.2:13710547-13710566 None:intergenic 30.0%
GCCATGTATAATATCTTTCT+AGG - chr2.2:13709787-13709806 None:intergenic 30.0%
GGGGAAAATATTTATGCTTA+TGG - chr2.2:13709966-13709985 None:intergenic 30.0%
TTAGAAAGACTAAACCTACA+AGG + chr2.2:13709545-13709564 MS.gene69851:CDS 30.0%
TTTGCAGAAACTAATCATGA+CGG + chr2.2:13710510-13710529 MS.gene69851:CDS 30.0%
! AATCAAAGCTATTTCCTTGT+AGG - chr2.2:13709562-13709581 None:intergenic 30.0%
! TCAAGAGGATTGATTTCATA+AGG - chr2.2:13709590-13709609 None:intergenic 30.0%
!! AAGTTCGATTTCTTTTGACT+TGG - chr2.2:13710725-13710744 None:intergenic 30.0%
AAACACCATTAATGAGAGTG+GGG - chr2.2:13709987-13710006 None:intergenic 35.0%
AAGACTCCAAATGAGAATCA+TGG - chr2.2:13709457-13709476 None:intergenic 35.0%
CAAAACTAGAGAATTGAGGA+AGG - chr2.2:13709848-13709867 None:intergenic 35.0%
CAAGATGTCTAAACAACTTG+GGG - chr2.2:13709754-13709773 None:intergenic 35.0%
CATAGTTCATGAATCCATTG+GGG + chr2.2:13709286-13709305 MS.gene69851:CDS 35.0%
CCAAGATGTCTAAACAACTT+GGG - chr2.2:13709755-13709774 None:intergenic 35.0%
CCATAGTTCATGAATCCATT+GGG + chr2.2:13709285-13709304 MS.gene69851:CDS 35.0%
CCTACAAAAAGTGATTCTTC+GGG + chr2.2:13709668-13709687 MS.gene69851:CDS 35.0%
CGATCAAAGAAAATAGTGTG+AGG - chr2.2:13710610-13710629 None:intergenic 35.0%
CTATTGAATCCCCATCAAAT+CGG - chr2.2:13710171-13710190 None:intergenic 35.0%
CTCTCAAACTCAAGAATGTA+AGG - chr2.2:13709322-13709341 None:intergenic 35.0%
CTTACATTCTTGAGTTTGAG+AGG + chr2.2:13709320-13709339 MS.gene69851:CDS 35.0%
CTTTATGATCAAACTAGGAC+AGG - chr2.2:13710482-13710501 None:intergenic 35.0%
GAAACACCATTAATGAGAGT+GGG - chr2.2:13709988-13710007 None:intergenic 35.0%
GACTTTCCATGATTCTCATT+TGG + chr2.2:13709448-13709467 MS.gene69851:CDS 35.0%
GCCTACAAAAAGTGATTCTT+CGG + chr2.2:13709667-13709686 MS.gene69851:CDS 35.0%
GTAAGGATAGTAACTACTGA+AGG + chr2.2:13710190-13710209 MS.gene69851:CDS 35.0%
TCCAAGATGTCTAAACAACT+TGG - chr2.2:13709756-13709775 None:intergenic 35.0%
TCCATAGTTCATGAATCCAT+TGG + chr2.2:13709284-13709303 MS.gene69851:CDS 35.0%
TGAAACACCATTAATGAGAG+TGG - chr2.2:13709989-13710008 None:intergenic 35.0%
TGTAGAGAAACAGAATTTGC+AGG - chr2.2:13710268-13710287 None:intergenic 35.0%
TTCTGCGTGGTATTTGAAAA+TGG + chr2.2:13710241-13710260 MS.gene69851:CDS 35.0%
TTGAAACTGGACAAAGTTGA+TGG + chr2.2:13710376-13710395 MS.gene69851:CDS 35.0%
TTGATGGGGATTCAATAGTA+AGG + chr2.2:13710173-13710192 MS.gene69851:CDS 35.0%
TTGTCCAGTTTCAAACTAAG+TGG - chr2.2:13710370-13710389 None:intergenic 35.0%
! AAGGTATTTAAGAACCCCAA+TGG - chr2.2:13709303-13709322 None:intergenic 35.0%
! ATAGATTAGCCACAGATGTT+TGG - chr2.2:13710404-13710423 None:intergenic 35.0%
! TATGCCACTTAGTTTGAAAC+TGG + chr2.2:13710363-13710382 MS.gene69851:CDS 35.0%
! TCTATAATGGTTTCCCGTTT+TGG + chr2.2:13710024-13710043 MS.gene69851:intron 35.0%
! TTGATAACCGACCAATTGTA+GGG - chr2.2:13710676-13710695 None:intergenic 35.0%
! TTTGGAGTCTTTGATTTCTC+TGG + chr2.2:13709466-13709485 MS.gene69851:CDS 35.0%
!!! AAGAATCACTTTTTGTAGGC+AGG - chr2.2:13709667-13709686 None:intergenic 35.0%
AAATCCAGCTTCCCTACAAT+TGG + chr2.2:13710662-13710681 MS.gene69851:CDS 40.0%
AACACCATTAATGAGAGTGG+GGG - chr2.2:13709986-13710005 None:intergenic 40.0%
CCCAAGTTGTTTAGACATCT+TGG + chr2.2:13709752-13709771 MS.gene69851:intron 40.0%
TCAAATCGGTACTTGAACCA+CGG - chr2.2:13710157-13710176 None:intergenic 40.0%
TCGCAAAATGGCAATGGAAA+CGG - chr2.2:13710432-13710451 None:intergenic 40.0%
TTCGGGAGAAAGTGATTCTT+CGG + chr2.2:13709685-13709704 MS.gene69851:CDS 40.0%
! CCCAATGGATTCATGAACTA+TGG - chr2.2:13709288-13709307 None:intergenic 40.0%
! CTGTGACATTGTTGTTCCTT+GGG + chr2.2:13710114-13710133 MS.gene69851:CDS 40.0%
! CTGTTTTCGCAAAATGGCAA+TGG - chr2.2:13710438-13710457 None:intergenic 40.0%
! TTGTAGGGAAGCTGGATTTT+AGG - chr2.2:13710661-13710680 None:intergenic 40.0%
!! GGTTCAAGTACCGATTTGAT+GGG + chr2.2:13710158-13710177 MS.gene69851:CDS 40.0%
!! GTTCAAGTACCGATTTGATG+GGG + chr2.2:13710159-13710178 MS.gene69851:CDS 40.0%
!! GTTGATAACCGACCAATTGT+AGG - chr2.2:13710677-13710696 None:intergenic 40.0%
!! TGGTTCAAGTACCGATTTGA+TGG + chr2.2:13710157-13710176 MS.gene69851:CDS 40.0%
!!! CATTGCCATTTTGCGAAAAC+AGG + chr2.2:13710436-13710455 MS.gene69851:CDS 40.0%
!!! CCCGAAGAATCACTTTTTGT+AGG - chr2.2:13709671-13709690 None:intergenic 40.0%
ACAACAATGTCACAGCTACC+CGG - chr2.2:13710109-13710128 None:intergenic 45.0%
ACACCATTAATGAGAGTGGG+GGG - chr2.2:13709985-13710004 None:intergenic 45.0%
CGCAAAATGGCAATGGAAAC+GGG - chr2.2:13710431-13710450 None:intergenic 45.0%
CTGAAGGTGAAGAGAATGTG+TGG + chr2.2:13710206-13710225 MS.gene69851:CDS 45.0%
GCAGGCAGTTAACAGTTTGA+AGG - chr2.2:13709649-13709668 None:intergenic 45.0%
GGTGAAGAGAATGTGTGGTT+CGG + chr2.2:13710211-13710230 MS.gene69851:CDS 45.0%
TCATGGAAAGTCTGTCCTAG+AGG - chr2.2:13709440-13709459 None:intergenic 45.0%
TCGGGAGAAAGTGATTCTTC+GGG + chr2.2:13709686-13709705 MS.gene69851:CDS 45.0%
TCTCGTCATGACTATAGGTC+AGG + chr2.2:13709710-13709729 MS.gene69851:intron 45.0%
TTTCCCCCCACTCTCATTAA+TGG + chr2.2:13709979-13709998 MS.gene69851:intron 45.0%
! CATGAAGTACCTGCTGCTAT+TGG + chr2.2:13709509-13709528 MS.gene69851:CDS 45.0%
! GAGCTCCTGTTTTCGCAAAA+TGG - chr2.2:13710444-13710463 None:intergenic 45.0%
! GCTGTGACATTGTTGTTCCT+TGG + chr2.2:13710113-13710132 MS.gene69851:CDS 45.0%
! TTGATGGCTCCAAACATCTG+TGG + chr2.2:13710392-13710411 MS.gene69851:CDS 45.0%
!! TTTAGCTCTCCAATAGCAGC+AGG - chr2.2:13709521-13709540 None:intergenic 45.0%
AATCGGTACTTGAACCACGG+TGG - chr2.2:13710154-13710173 None:intergenic 50.0%
ATTCGAATGACACTCCACCG+TGG + chr2.2:13710137-13710156 MS.gene69851:CDS 50.0%
CCAGCTTCCCTACAATTGGT+CGG + chr2.2:13710666-13710685 MS.gene69851:CDS 50.0%
CGGGATCTCGTCATGACTAT+AGG + chr2.2:13709705-13709724 MS.gene69851:CDS 50.0%
GTGTACAAGAAAGCAGCAGC+CGG + chr2.2:13710629-13710648 MS.gene69851:CDS 50.0%
TCTTCTGGTACCAGTATCCC+AGG + chr2.2:13710077-13710096 MS.gene69851:intron 50.0%
! GGAGTGTCATTCGAATCCCA+AGG - chr2.2:13710133-13710152 None:intergenic 50.0%
!! GCTGGATTTTAGGTCCAGAC+CGG - chr2.2:13710651-13710670 None:intergenic 50.0%
CAGTATCCCAGGTGCATTCC+GGG + chr2.2:13710088-13710107 MS.gene69851:intron 55.0%
CCAGTATCCCAGGTGCATTC+CGG + chr2.2:13710087-13710106 MS.gene69851:intron 55.0%
CCGACCAATTGTAGGGAAGC+TGG - chr2.2:13710669-13710688 None:intergenic 55.0%
! GTTCGGCTTTGTCTTCTGCG+TGG + chr2.2:13710228-13710247 MS.gene69851:CDS 55.0%
ACAGCTACCCGGAATGCACC+TGG - chr2.2:13710098-13710117 None:intergenic 60.0%
CAAGAAAGCAGCAGCCGGTC+TGG + chr2.2:13710634-13710653 MS.gene69851:CDS 60.0%
CAGCTACCCGGAATGCACCT+GGG - chr2.2:13710097-13710116 None:intergenic 60.0%
CCGGAATGCACCTGGGATAC+TGG - chr2.2:13710090-13710109 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 13709263 13710762 13709263 ID=MS.gene69851
chr2.2 mRNA 13709263 13710762 13709263 ID=MS.gene69851.t1;Parent=MS.gene69851
chr2.2 exon 13709263 13709726 13709263 ID=MS.gene69851.t1.exon1;Parent=MS.gene69851.t1
chr2.2 CDS 13709263 13709726 13709263 ID=cds.MS.gene69851.t1;Parent=MS.gene69851.t1
chr2.2 exon 13710099 13710762 13710099 ID=MS.gene69851.t1.exon2;Parent=MS.gene69851.t1
chr2.2 CDS 13710099 13710762 13710099 ID=cds.MS.gene69851.t1;Parent=MS.gene69851.t1
Gene Sequence

>MS.gene69851

ATGGAAAGATGCACAAGTTTATCCATAGTTCATGAATCCATTGGGGTTCTTAAATACCTTACATTCTTGAGTTTGAGAGGCTGCACAAATCTTGTTGAAATATCTAATAACATCAATAGGATGATATCTCTTAGAACTCTAGATTTATGTGGGTGCTCGAAACTTAAAATTCTACCTCTAGGACAGACTTTCCATGATTCTCATTTGGAGTCTTTGATTTCTCTGGATCTAAGCTTTTGCGATCTTCATGAAGTACCTGCTGCTATTGGAGAGCTAAAATGTTTAGAAAGACTAAACCTACAAGGAAATAGCTTTGATTCACTACCTTATGAAATCAATCCTCTTGAAAGTCTAGCATATTTAAACTTATCTCATTGTCACAACCTTCAAACTGTTAACTGCCTGCCTACAAAAAGTGATTCTTCGGGAGAAAGTGATTCTTCGGGATCTCGTCATGACTATAGGTCAGGAGTATATTTTTTCGACTGCCCCAAGTTGTTTAGACATCTTGGAAACCAATTCCTAGAAAGATATTATACATGGCTACAAGTACAATATAAGGTGTGTACGTACGTTGCTTGCCCTTCCTCAATTCTCTAGTTTTGATATTTTTAGTTTTATTTTTATTTTTATCTAAGTCGTGCAATATTCATGAAGATCTATATATAATGCAATATATTTAAAAGAACTTGTTGCATTTCCATAAGCATAAATATTTTCCCCCCACTCTCATTAATGGTGTTTCATAATGGAGAAGTTATTCTATAATGGTTTCCCGTTTTGGTAATTATATGTTTAGAATAATATGTTTTTATCTTCTGGTACCAGTATCCCAGGTGCATTCCGGGTAGCTGTGACATTGTTGTTCCTTGGGATTCGAATGACACTCCACCGTGGTTCAAGTACCGATTTGATGGGGATTCAATAGTAAGGATAGTAACTACTGAAGGTGAAGAGAATGTGTGGTTCGGCTTTGTCTTCTGCGTGGTATTTGAAAATGGTCCTGCAAATTCTGTTTCTCTACAAGATTCATTTACATCGGCATTGCCACATCCTTTTTATCTTTCTTTTGAAAGTGAGCACACAGAAGAACGCTTCGATATGCCACTTAGTTTGAAACTGGACAAAGTTGATGGCTCCAAACATCTGTGGCTAATCTATATCTCCCGTTTCCATTGCCATTTTGCGAAAACAGGAGCTCATATCACATTTAAAGCCTGTCCTAGTTTGATCATAAAGAAATGGGGTTTGCAGAAACTAATCATGACGGAATACAGATTACCACTTCTATTACTTGATACAAGTTCTTCTCATGACATATTGAATTGGTTTACATATGGTGATCCTCACACTATTTTCTTTGATCGTGTACAAGAAAGCAGCAGCCGGTCTGGACCTAAAATCCAGCTTCCCTACAATTGGTCGGTTATCAACAAAGAAGAAATTGAGAATTCTCAAACCAAGTCAAAAGAAATCGAACTTTATAATCTGGGTCTTTAA
Protein sequence

>MS.gene69851.t1

MERCTSLSIVHESIGVLKYLTFLSLRGCTNLVEISNNINRMISLRTLDLCGCSKLKILPLGQTFHDSHLESLISLDLSFCDLHEVPAAIGELKCLERLNLQGNSFDSLPYEINPLESLAYLNLSHCHNLQTVNCLPTKSDSSGESDSSGSRHDYRCIPGSCDIVVPWDSNDTPPWFKYRFDGDSIVRIVTTEGEENVWFGFVFCVVFENGPANSVSLQDSFTSALPHPFYLSFESEHTEERFDMPLSLKLDKVDGSKHLWLIYISRFHCHFAKTGAHITFKACPSLIIKKWGLQKLIMTEYRLPLLLLDTSSSHDILNWFTYGDPHTIFFDRVQESSSRSGPKIQLPYNWSVINKEEIENSQTKSKEIELYNLGL