Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene69885.t1 | XP_003601329.1 | 97.6 | 250 | 6 | 0 | 1 | 250 | 1 | 250 | 4.40E-140 | 507.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene69885.t1 | Q9ZNT1 | 76.2 | 235 | 56 | 0 | 16 | 250 | 19 | 253 | 4.3e-104 | 379.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene69885.t1 | G7J636 | 97.6 | 250 | 6 | 0 | 1 | 250 | 1 | 250 | 3.1e-140 | 507.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene059774 | MS.gene69885 | 0.807082 | 6.01E-50 | -1.69E-46 |
MS.gene060697 | MS.gene69885 | 0.803813 | 2.91E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene69885.t1 | MTR_3g079510 | 97.600 | 250 | 6 | 0 | 1 | 250 | 1 | 250 | 0.0 | 509 |
MS.gene69885.t1 | MTR_3g479590 | 97.600 | 250 | 6 | 0 | 1 | 250 | 1 | 250 | 0.0 | 509 |
MS.gene69885.t1 | MTR_7g087090 | 72.400 | 250 | 69 | 0 | 1 | 250 | 1 | 250 | 9.32e-135 | 382 |
MS.gene69885.t1 | MTR_8g044160 | 67.200 | 250 | 81 | 1 | 1 | 250 | 19 | 267 | 3.66e-124 | 355 |
MS.gene69885.t1 | MTR_4g114030 | 43.798 | 258 | 117 | 7 | 16 | 250 | 32 | 284 | 1.11e-63 | 202 |
MS.gene69885.t1 | MTR_5g059820 | 37.652 | 247 | 132 | 5 | 20 | 246 | 606 | 850 | 6.58e-45 | 161 |
MS.gene69885.t1 | MTR_3g073180 | 37.991 | 229 | 118 | 6 | 39 | 246 | 643 | 868 | 4.15e-41 | 150 |
MS.gene69885.t1 | MTR_3g073150 | 37.391 | 230 | 118 | 7 | 39 | 246 | 618 | 843 | 1.52e-39 | 146 |
MS.gene69885.t1 | MTR_4g113900 | 38.298 | 94 | 50 | 2 | 95 | 186 | 91 | 178 | 2.53e-15 | 72.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene69885.t1 | AT5G17770 | 77.232 | 224 | 51 | 0 | 27 | 250 | 30 | 253 | 4.29e-130 | 370 |
MS.gene69885.t1 | AT5G20080 | 43.651 | 252 | 122 | 6 | 17 | 250 | 38 | 287 | 6.45e-64 | 203 |
MS.gene69885.t1 | AT1G37130 | 40.930 | 215 | 103 | 5 | 48 | 241 | 666 | 877 | 1.46e-43 | 158 |
MS.gene69885.t1 | AT1G77760 | 36.744 | 215 | 112 | 5 | 48 | 241 | 666 | 877 | 5.12e-40 | 147 |
Find 67 sgRNAs with CRISPR-Local
Find 237 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTAGCTCTTGTTGCCATTCT+TGG | 0.216497 | 3.4:+75860416 | MS.gene69885:CDS |
TCCAATGTTGTTGGTGTATA+TGG | 0.225095 | 3.4:-75861937 | None:intergenic |
AAAGGAACCTTTGGGTTTCT+TGG | 0.232453 | 3.4:-75860465 | None:intergenic |
CTCTGCAGCCACCAGAAATA+TGG | 0.234593 | 3.4:+75864107 | MS.gene69885:intron |
TAATAAACTTTAAATCGATT+TGG | 0.246494 | 3.4:-75862987 | None:intergenic |
TGGCATCACCCCAATGTTTC+AGG | 0.247990 | 3.4:+75862501 | MS.gene69885:CDS |
TTAAATTCCTTGAAATTATC+AGG | 0.250101 | 3.4:-75861610 | None:intergenic |
ACTCCACCATCCCATATTTC+TGG | 0.280741 | 3.4:-75864118 | None:intergenic |
CCCAACCAAGTAAAAGCTTT+TGG | 0.296393 | 3.4:+75862460 | MS.gene69885:CDS |
AATAAACTTTAAATCGATTT+GGG | 0.325119 | 3.4:-75862986 | None:intergenic |
TGCACCAGCGCCGGATATTA+AGG | 0.334481 | 3.4:+75864180 | MS.gene69885:CDS |
ACATTTCTTGCTAGGGTGCT+TGG | 0.348721 | 3.4:+75861585 | MS.gene69885:intron |
AGTTTATTATGTTCTAAATC+AGG | 0.363387 | 3.4:+75863001 | MS.gene69885:CDS |
TCAGTGTTGGGGCTTCCTAT+TGG | 0.381090 | 3.4:+75861700 | MS.gene69885:CDS |
ATACTTTGAATTGGTTGTTA+AGG | 0.401233 | 3.4:+75861972 | MS.gene69885:CDS |
TATTCAATACCTGAAACATT+GGG | 0.409798 | 3.4:-75862510 | None:intergenic |
TTGTGTTTCAATCATTTCCT+TGG | 0.415204 | 3.4:-75864152 | None:intergenic |
AACTGGGAAATTATGACTGC+TGG | 0.418931 | 3.4:-75864249 | None:intergenic |
TTAATATCCGGCGCTGGTGC+AGG | 0.421129 | 3.4:-75864178 | None:intergenic |
CAGCTGATATGTTGTCCAAT+AGG | 0.422104 | 3.4:-75861715 | None:intergenic |
TCCTACTCGTAGCTCAGTGT+TGG | 0.424250 | 3.4:+75861687 | MS.gene69885:CDS |
CCTACTCGTAGCTCAGTGTT+GGG | 0.424400 | 3.4:+75861688 | MS.gene69885:CDS |
GGAATGGTTGCTGGTGGCAC+TGG | 0.437562 | 3.4:+75862481 | MS.gene69885:CDS |
ATATTCAATACCTGAAACAT+TGG | 0.449975 | 3.4:-75862511 | None:intergenic |
TCTGCAGCCACCAGAAATAT+GGG | 0.451634 | 3.4:+75864108 | MS.gene69885:intron |
CTTGGATCCTGATAATTTCA+AGG | 0.456407 | 3.4:+75861603 | MS.gene69885:CDS |
TGATGTTGGATACTTTGAAT+TGG | 0.465922 | 3.4:+75861963 | MS.gene69885:CDS |
GCTCTTGTTGCCATTCTTGG+TGG | 0.476204 | 3.4:+75860419 | MS.gene69885:CDS |
GCAGGAAGAGCTCGATGACT+TGG | 0.488451 | 3.4:+75862953 | MS.gene69885:intron |
ATATGATGACATTCTTCTAA+AGG | 0.515486 | 3.4:+75862702 | MS.gene69885:CDS |
ACCATATACACCAACAACAT+TGG | 0.516389 | 3.4:+75861936 | MS.gene69885:CDS |
GGCATATATCAAATTTACAT+TGG | 0.522759 | 3.4:-75862671 | None:intergenic |
TTGGACAACATATCAGCTGC+AGG | 0.531478 | 3.4:+75861719 | MS.gene69885:CDS |
GTAAGCGGTACCACCAAGAA+TGG | 0.542043 | 3.4:-75860429 | None:intergenic |
ACTGGGAAATTATGACTGCT+GGG | 0.543271 | 3.4:-75864248 | None:intergenic |
ACATCAGTATCCAATGTTGT+TGG | 0.543426 | 3.4:-75861946 | None:intergenic |
TGTAGAGGAAAAGACAGTCT+TGG | 0.545525 | 3.4:+75861898 | MS.gene69885:intron |
ACAACATTGGATACTGATGT+TGG | 0.552637 | 3.4:+75861949 | MS.gene69885:CDS |
AATGTCATCATATGTGACAT+TGG | 0.554025 | 3.4:-75862692 | None:intergenic |
GAAATATGGGATGGTGGAGT+CGG | 0.556710 | 3.4:+75864121 | MS.gene69885:CDS |
TGATGAGACATTCTTCCTTG+TGG | 0.557313 | 3.4:-75862106 | None:intergenic |
ACAATTCCCTGCACCAGCGC+CGG | 0.558529 | 3.4:+75864171 | MS.gene69885:CDS |
AAATTATGACTGCTGGGAAT+CGG | 0.562559 | 3.4:-75864242 | None:intergenic |
TAATATCCGGCGCTGGTGCA+GGG | 0.566564 | 3.4:-75864177 | None:intergenic |
GGCGATTACTTAGCTGTGAA+AGG | 0.570099 | 3.4:+75862148 | MS.gene69885:CDS |
TCTGCAGAATCAGAAGGTAG+AGG | 0.575000 | 3.4:+75860379 | MS.gene69885:CDS |
CACTTTAGTGAGATGCGTGA+AGG | 0.575622 | 3.4:+75862127 | MS.gene69885:CDS |
CTTAGCTGTGAAAGGACCAA+AGG | 0.579093 | 3.4:+75862156 | MS.gene69885:CDS |
AATCGGTGTTTGAGAGTGGA+GGG | 0.587936 | 3.4:-75864225 | None:intergenic |
TTGAGAGTGGAGGGGTCACA+TGG | 0.591549 | 3.4:-75864216 | None:intergenic |
CTACTCGTAGCTCAGTGTTG+GGG | 0.596507 | 3.4:+75861689 | MS.gene69885:CDS |
ATGACCTTAATATCCGGCGC+TGG | 0.597115 | 3.4:-75864184 | None:intergenic |
CCACCATCCCATATTTCTGG+TGG | 0.599890 | 3.4:-75864115 | None:intergenic |
TGGAGTCGGATTCGTTTCCA+AGG | 0.613660 | 3.4:+75864135 | MS.gene69885:CDS |
GAATCGGTGTTTGAGAGTGG+AGG | 0.614237 | 3.4:-75864226 | None:intergenic |
AGCCATACTAGAAAATCCAC+AGG | 0.630199 | 3.4:+75862642 | MS.gene69885:CDS |
CCACCAGAAATATGGGATGG+TGG | 0.642658 | 3.4:+75864115 | MS.gene69885:CDS |
ATCGGTGTTTGAGAGTGGAG+GGG | 0.656194 | 3.4:-75864224 | None:intergenic |
CAGCCACCAGAAATATGGGA+TGG | 0.656662 | 3.4:+75864112 | MS.gene69885:intron |
TGGGAATCGGTGTTTGAGAG+TGG | 0.657650 | 3.4:-75864229 | None:intergenic |
GGCAACAAGAGCTACTGCCA+TGG | 0.661237 | 3.4:-75860408 | None:intergenic |
TATCTCACCAAGAAACCCAA+AGG | 0.661989 | 3.4:+75860458 | MS.gene69885:CDS |
ATTCAATACCTGAAACATTG+GGG | 0.674094 | 3.4:-75862509 | None:intergenic |
GAAGGTAGAGGTGATAACCA+TGG | 0.686595 | 3.4:+75860391 | MS.gene69885:CDS |
GGTGAGATAGTAATAGTAAG+CGG | 0.692378 | 3.4:-75860444 | None:intergenic |
CCCAACACTGAGCTACGAGT+AGG | 0.704930 | 3.4:-75861688 | None:intergenic |
AATAATTAGATGTATCCACA+AGG | 0.715861 | 3.4:+75862091 | MS.gene69885:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATAATAAATGTGATTATTA+AGG | - | chr3.4:75862604-75862623 | None:intergenic | 10.0% |
!!! | TATTTTTTATTTTGAGAAAA+AGG | + | chr3.4:75860675-75860694 | MS.gene69885:intron | 10.0% |
!! | AACAACTTTAATTATTAACT+GGG | - | chr3.4:75862305-75862324 | None:intergenic | 15.0% |
!! | TAACAACTTTAATTATTAAC+TGG | - | chr3.4:75862306-75862325 | None:intergenic | 15.0% |
!! | TAATAAACTTTAAATCGATT+TGG | - | chr3.4:75862990-75863009 | None:intergenic | 15.0% |
!! | TATAATAATTGAAGTATAGT+TGG | + | chr3.4:75861078-75861097 | MS.gene69885:intron | 15.0% |
!!! | AATAAACTTTAAATCGATTT+GGG | - | chr3.4:75862989-75863008 | None:intergenic | 15.0% |
!!! | ACATTTATTATTTTTTGTTC+AGG | + | chr3.4:75862612-75862631 | MS.gene69885:intron | 15.0% |
!!! | CTATATAAAACTTTTTTACA+CGG | + | chr3.4:75860901-75860920 | MS.gene69885:intron | 15.0% |
!!! | GGTTAATATTTATTTTTTGA+AGG | + | chr3.4:75863239-75863258 | MS.gene69885:intron | 15.0% |
!!! | TATATAAAACTTTTTTACAC+GGG | + | chr3.4:75860902-75860921 | MS.gene69885:intron | 15.0% |
!!! | TCTTTTTTATTCAAATCAAA+GGG | + | chr3.4:75860504-75860523 | MS.gene69885:intron | 15.0% |
!!! | TTCTTTTTTATTCAAATCAA+AGG | + | chr3.4:75860503-75860522 | MS.gene69885:intron | 15.0% |
!!! | TTTGATTTGAATAAAAAAGA+AGG | - | chr3.4:75860504-75860523 | None:intergenic | 15.0% |
!! | AAAAAAGAATCTTGTGTAAT+GGG | + | chr3.4:75861472-75861491 | MS.gene69885:intron | 20.0% |
!! | AAATCAAAAGAATTCATCTA+TGG | + | chr3.4:75862780-75862799 | MS.gene69885:intron | 20.0% |
!! | AATACTAAAATCCTAGTATA+TGG | - | chr3.4:75862372-75862391 | None:intergenic | 20.0% |
!! | AATCAAAAGAATTCATCTAT+GGG | + | chr3.4:75862781-75862800 | MS.gene69885:intron | 20.0% |
!! | ACAGGAAATGAAAAAAATAA+AGG | + | chr3.4:75861341-75861360 | MS.gene69885:intron | 20.0% |
!! | AGAAAAAGGAATATATGATA+TGG | + | chr3.4:75860689-75860708 | MS.gene69885:intron | 20.0% |
!! | ATACAATAATTCAAGCTTTA+GGG | + | chr3.4:75861529-75861548 | MS.gene69885:intron | 20.0% |
!! | ATCAATATGTACACTTAAAA+AGG | - | chr3.4:75862048-75862067 | None:intergenic | 20.0% |
!! | CAGGAAATGAAAAAAATAAA+GGG | + | chr3.4:75861342-75861361 | MS.gene69885:intron | 20.0% |
!! | GAAAAAGGAATATATGATAT+GGG | + | chr3.4:75860690-75860709 | MS.gene69885:intron | 20.0% |
!! | TAAATTCTTAACCATAATAC+AGG | - | chr3.4:75862905-75862924 | None:intergenic | 20.0% |
!! | TCTTCTAACCTAAAAAAATA+GGG | + | chr3.4:75863433-75863452 | MS.gene69885:intron | 20.0% |
!! | TGAATTATTCAAAACAGATA+TGG | - | chr3.4:75862199-75862218 | None:intergenic | 20.0% |
!! | TTAAATTCCTTGAAATTATC+AGG | - | chr3.4:75861613-75861632 | None:intergenic | 20.0% |
!!! | AATTTTTTAATAACGTATCG+AGG | + | chr3.4:75863833-75863852 | MS.gene69885:intron | 20.0% |
!!! | AGTTTATTATGTTCTAAATC+AGG | + | chr3.4:75863001-75863020 | MS.gene69885:CDS | 20.0% |
!!! | ATCTGTTTTGAATAATTCAT+TGG | + | chr3.4:75862200-75862219 | MS.gene69885:intron | 20.0% |
!!! | TATATTCTATCTAATTTGTG+CGG | + | chr3.4:75863673-75863692 | MS.gene69885:intron | 20.0% |
!!! | TTTGTGTAGTTTTATGTATT+TGG | + | chr3.4:75860803-75860822 | MS.gene69885:intron | 20.0% |
! | AAAAAGAATCTTGTGTAATG+GGG | + | chr3.4:75861473-75861492 | MS.gene69885:intron | 25.0% |
! | AAAAATTGAAAGATCAAAGG+AGG | - | chr3.4:75862562-75862581 | None:intergenic | 25.0% |
! | AAAATTGAAAGATCAAAGGA+GGG | - | chr3.4:75862561-75862580 | None:intergenic | 25.0% |
! | AAGCTTGAATTATTGTATGA+AGG | - | chr3.4:75861527-75861546 | None:intergenic | 25.0% |
! | AATAATTAGATGTATCCACA+AGG | + | chr3.4:75862091-75862110 | MS.gene69885:intron | 25.0% |
! | AATATACTTTAATGTCTCCA+GGG | + | chr3.4:75862421-75862440 | MS.gene69885:intron | 25.0% |
! | AGCTTGAATTATTGTATGAA+GGG | - | chr3.4:75861526-75861545 | None:intergenic | 25.0% |
! | AGTCAAATGAAAAATACGAA+TGG | + | chr3.4:75862857-75862876 | MS.gene69885:intron | 25.0% |
! | ATAAAAATCAAACCCTACTA+AGG | - | chr3.4:75861393-75861412 | None:intergenic | 25.0% |
! | ATACTTTGAATTGGTTGTTA+AGG | + | chr3.4:75861972-75861991 | MS.gene69885:CDS | 25.0% |
! | ATAGAAAAAGGAAAAACGAA+TGG | - | chr3.4:75863978-75863997 | None:intergenic | 25.0% |
! | ATATGATGACATTCTTCTAA+AGG | + | chr3.4:75862702-75862721 | MS.gene69885:CDS | 25.0% |
! | ATATTCAATACCTGAAACAT+TGG | - | chr3.4:75862514-75862533 | None:intergenic | 25.0% |
! | ATTGAACAGACAAATATCTT+TGG | + | chr3.4:75862815-75862834 | MS.gene69885:intron | 25.0% |
! | CAAAAAAGAATCTTGTGTAA+TGG | + | chr3.4:75861471-75861490 | MS.gene69885:intron | 25.0% |
! | CATACAATAATTCAAGCTTT+AGG | + | chr3.4:75861528-75861547 | MS.gene69885:intron | 25.0% |
! | CTACATGTCAAATAAAAAGT+TGG | - | chr3.4:75860595-75860614 | None:intergenic | 25.0% |
! | CTCTTCTAACCTAAAAAAAT+AGG | + | chr3.4:75863432-75863451 | MS.gene69885:intron | 25.0% |
! | GGCATATATCAAATTTACAT+TGG | - | chr3.4:75862674-75862693 | None:intergenic | 25.0% |
! | GTTTAAATGTATTCTCATGT+TGG | + | chr3.4:75864068-75864087 | MS.gene69885:intron | 25.0% |
! | TAAAAACTAACTTGAGAAAG+TGG | + | chr3.4:75860976-75860995 | MS.gene69885:intron | 25.0% |
! | TAAAAATCAAACCCTACTAA+GGG | - | chr3.4:75861392-75861411 | None:intergenic | 25.0% |
! | TAATATACTTTAATGTCTCC+AGG | + | chr3.4:75862420-75862439 | MS.gene69885:intron | 25.0% |
! | TAGTAGTAGTAATTTAGGTA+TGG | + | chr3.4:75861132-75861151 | MS.gene69885:intron | 25.0% |
! | TATTAGGTTAAGGTTTATGA+AGG | + | chr3.4:75862343-75862362 | MS.gene69885:intron | 25.0% |
! | TATTCAATACCTGAAACATT+GGG | - | chr3.4:75862513-75862532 | None:intergenic | 25.0% |
! | TATTCCCACATATATTTACA+TGG | - | chr3.4:75860953-75860972 | None:intergenic | 25.0% |
! | TCAAAAATGACCTTAATATC+CGG | - | chr3.4:75864193-75864212 | None:intergenic | 25.0% |
! | TGCAAAAATTGAAAGATCAA+AGG | - | chr3.4:75862565-75862584 | None:intergenic | 25.0% |
!! | AATATGTAAGACAGAAGTAT+AGG | - | chr3.4:75863334-75863353 | None:intergenic | 25.0% |
!! | AGTTCTAGTAGTAGTAATTT+AGG | + | chr3.4:75861127-75861146 | MS.gene69885:intron | 25.0% |
!! | ATATATCTGTTTTCTTGTAG+AGG | + | chr3.4:75861883-75861902 | MS.gene69885:intron | 25.0% |
!! | TTCCTTTTTCTATGCAAATT+TGG | + | chr3.4:75863985-75864004 | MS.gene69885:intron | 25.0% |
!!! | AAACAGAACTTTTTTCATGA+AGG | + | chr3.4:75860642-75860661 | MS.gene69885:intron | 25.0% |
!!! | ATTCTTTTTTGCTTGAAATG+TGG | - | chr3.4:75861462-75861481 | None:intergenic | 25.0% |
!!! | GAAAGAATTTTAAGAACCTT+TGG | - | chr3.4:75862175-75862194 | None:intergenic | 25.0% |
!!! | TTCTTTTTTGCTTGAAATGT+GGG | - | chr3.4:75861461-75861480 | None:intergenic | 25.0% |
!!! | TTTTGAAGGAAAAAAATGAC+TGG | + | chr3.4:75863253-75863272 | MS.gene69885:intron | 25.0% |
AAAAGCTGATCATGCTAAAA+AGG | - | chr3.4:75861802-75861821 | None:intergenic | 30.0% | |
AACCAAAAATTCCATCTAAG+TGG | - | chr3.4:75864051-75864070 | None:intergenic | 30.0% | |
AAGCTCAAGTTATTAGGTTA+AGG | + | chr3.4:75862333-75862352 | MS.gene69885:intron | 30.0% | |
AAGTTTCTACATTTCTTGCT+AGG | + | chr3.4:75861577-75861596 | MS.gene69885:intron | 30.0% | |
AATGTCATCATATGTGACAT+TGG | - | chr3.4:75862695-75862714 | None:intergenic | 30.0% | |
ACATACAACGAAAACTACAA+AGG | - | chr3.4:75862741-75862760 | None:intergenic | 30.0% | |
AGACAAAAAAAAGGAACCTT+TGG | - | chr3.4:75860477-75860496 | None:intergenic | 30.0% | |
AGTACTTATGATGTTCTCTT+TGG | + | chr3.4:75863629-75863648 | MS.gene69885:intron | 30.0% | |
AGTTTCTACATTTCTTGCTA+GGG | + | chr3.4:75861578-75861597 | MS.gene69885:intron | 30.0% | |
ATAAAGGGTTTCTCAAACTA+TGG | + | chr3.4:75861357-75861376 | MS.gene69885:intron | 30.0% | |
ATTCAATACCTGAAACATTG+GGG | - | chr3.4:75862512-75862531 | None:intergenic | 30.0% | |
ATTGTATGAAGGGTTATCAA+TGG | - | chr3.4:75861516-75861535 | None:intergenic | 30.0% | |
CTCCAAATTTGCATAGAAAA+AGG | - | chr3.4:75863990-75864009 | None:intergenic | 30.0% | |
GAAGGTAGAAGACAAAAAAA+AGG | - | chr3.4:75860486-75860505 | None:intergenic | 30.0% | |
GAATCAAAGTGAAAACACAA+TGG | + | chr3.4:75861294-75861313 | MS.gene69885:intron | 30.0% | |
GACAAAAAAAAGGAACCTTT+GGG | - | chr3.4:75860476-75860495 | None:intergenic | 30.0% | |
GATCATGCTAAAAAGGAATT+AGG | - | chr3.4:75861795-75861814 | None:intergenic | 30.0% | |
GTATGTTAACGTAAGTTGTA+TGG | + | chr3.4:75862755-75862774 | MS.gene69885:intron | 30.0% | |
TAAATCTCAAGCCTGTATTA+TGG | + | chr3.4:75862891-75862910 | MS.gene69885:intron | 30.0% | |
TCCAAAAAGCTCAAGTTATT+AGG | + | chr3.4:75862327-75862346 | MS.gene69885:intron | 30.0% | |
TGATGTTGGATACTTTGAAT+TGG | + | chr3.4:75861963-75861982 | MS.gene69885:CDS | 30.0% | |
TTGAAATGTGGGCAATATAT+AGG | - | chr3.4:75861450-75861469 | None:intergenic | 30.0% | |
TTGTGTTTCAATCATTTCCT+TGG | - | chr3.4:75864155-75864174 | None:intergenic | 30.0% | |
! | ACCTAATAACTTGAGCTTTT+TGG | - | chr3.4:75862331-75862350 | None:intergenic | 30.0% |
! | ATACGATACTTCACCATTTT+TGG | - | chr3.4:75863072-75863091 | None:intergenic | 30.0% |
! | ATAGGTCAACTTCCTTATTT+AGG | - | chr3.4:75861432-75861451 | None:intergenic | 30.0% |
! | ATCCACTTAGATGGAATTTT+TGG | + | chr3.4:75864046-75864065 | MS.gene69885:intron | 30.0% |
! | ATCTTGGTGACAAAAAATGA+AGG | - | chr3.4:75864024-75864043 | None:intergenic | 30.0% |
! | CGTAAAACTTTTTAACCTGA+CGG | - | chr3.4:75861215-75861234 | None:intergenic | 30.0% |
! | CTGCTCTAGGTTTAATTTAT+AGG | + | chr3.4:75860869-75860888 | MS.gene69885:intron | 30.0% |
!! | TATGAAGGTATCCATATACT+AGG | + | chr3.4:75862358-75862377 | MS.gene69885:intron | 30.0% |
!! | TTCAGGTATTGAATATGCAA+AGG | + | chr3.4:75862518-75862537 | MS.gene69885:intron | 30.0% |
!!! | ACGAGAAACCCTATTTTTTT+AGG | - | chr3.4:75863444-75863463 | None:intergenic | 30.0% |
!!! | TTTAGTTTTGATATACCGTC+AGG | + | chr3.4:75861197-75861216 | MS.gene69885:intron | 30.0% |
AAAAAATGACTGGTACGTGT+CGG | + | chr3.4:75863263-75863282 | MS.gene69885:intron | 35.0% | |
ACAACATTGGATACTGATGT+TGG | + | chr3.4:75861949-75861968 | MS.gene69885:CDS | 35.0% | |
ACAGAGTAGAATTCAATCAG+TGG | - | chr3.4:75863505-75863524 | None:intergenic | 35.0% | |
ACATCAGTATCCAATGTTGT+TGG | - | chr3.4:75861949-75861968 | None:intergenic | 35.0% | |
ACCATATACACCAACAACAT+TGG | + | chr3.4:75861936-75861955 | MS.gene69885:CDS | 35.0% | |
AGAGAATAGCTATTGCTATG+TGG | - | chr3.4:75863469-75863488 | None:intergenic | 35.0% | |
CACGCCATGTAAATATATGT+GGG | + | chr3.4:75860946-75860965 | MS.gene69885:intron | 35.0% | |
CATGCTAAAAAGGAATTAGG+CGG | - | chr3.4:75861792-75861811 | None:intergenic | 35.0% | |
CTTATGATGTTCTCTTTGGA+TGG | + | chr3.4:75863633-75863652 | MS.gene69885:intron | 35.0% | |
CTTGGATCCTGATAATTTCA+AGG | + | chr3.4:75861603-75861622 | MS.gene69885:CDS | 35.0% | |
GGCTTGAGATTTATAGACTA+TGG | - | chr3.4:75862884-75862903 | None:intergenic | 35.0% | |
GGTGAGATAGTAATAGTAAG+CGG | - | chr3.4:75860447-75860466 | None:intergenic | 35.0% | |
TACTGTTTCACACTCAATGA+AGG | + | chr3.4:75861828-75861847 | MS.gene69885:intron | 35.0% | |
TAGAATTCAATCAGTGGTAG+TGG | - | chr3.4:75863499-75863518 | None:intergenic | 35.0% | |
TCAAAATTCCCGATACGATA+CGG | - | chr3.4:75863859-75863878 | None:intergenic | 35.0% | |
TCCAATGTTGTTGGTGTATA+TGG | - | chr3.4:75861940-75861959 | None:intergenic | 35.0% | |
TGTTTGTGTTTGTGTCTTAG+TGG | + | chr3.4:75860559-75860578 | MS.gene69885:intron | 35.0% | |
! | ACTTCCTTATTTAGGAGAAC+AGG | - | chr3.4:75861424-75861443 | None:intergenic | 35.0% |
! | CCAAAAGCTTTTACTTGGTT+GGG | - | chr3.4:75862463-75862482 | None:intergenic | 35.0% |
! | CCATTCCAAAAGCTTTTACT+TGG | - | chr3.4:75862468-75862487 | None:intergenic | 35.0% |
! | CTCACTTGCTAATACAGTAA+TGG | - | chr3.4:75862262-75862281 | None:intergenic | 35.0% |
! | CTTCCTTATTTAGGAGAACA+GGG | - | chr3.4:75861423-75861442 | None:intergenic | 35.0% |
! | GCATTACGCTGTTATTTGAT+TGG | + | chr3.4:75860998-75861017 | MS.gene69885:intron | 35.0% |
! | TAAGACAGAAGTATAGGTGT+CGG | - | chr3.4:75863328-75863347 | None:intergenic | 35.0% |
! | TCCAAAAGCTTTTACTTGGT+TGG | - | chr3.4:75862464-75862483 | None:intergenic | 35.0% |
! | TTGCAAGCAAAAGTGTAAAC+AGG | + | chr3.4:75861323-75861342 | MS.gene69885:intron | 35.0% |
!! | CCAAGTAAAAGCTTTTGGAA+TGG | + | chr3.4:75862465-75862484 | MS.gene69885:CDS | 35.0% |
!!! | CTTCACCATTTTTGGAGTAT+CGG | - | chr3.4:75863064-75863083 | None:intergenic | 35.0% |
!!! | GAGTTTTAGTTGAACTGTGT+TGG | + | chr3.4:75862279-75862298 | MS.gene69885:intron | 35.0% |
!!! | TTCACCATTTTTGGAGTATC+GGG | - | chr3.4:75863063-75863082 | None:intergenic | 35.0% |
!!! | TTTACATTGGTTTTGTCCTG+TGG | - | chr3.4:75862661-75862680 | None:intergenic | 35.0% |
AAACAATGACCGATACGTGT+CGG | + | chr3.4:75863180-75863199 | MS.gene69885:intron | 40.0% | |
AGCCATACTAGAAAATCCAC+AGG | + | chr3.4:75862642-75862661 | MS.gene69885:CDS | 40.0% | |
CAGCTGATATGTTGTCCAAT+AGG | - | chr3.4:75861718-75861737 | None:intergenic | 40.0% | |
CCAAGATAGATCCACTTAGA+TGG | + | chr3.4:75864037-75864056 | MS.gene69885:intron | 40.0% | |
CCACATATATTTACATGGCG+TGG | - | chr3.4:75860948-75860967 | None:intergenic | 40.0% | |
CCACGCCATGTAAATATATG+TGG | + | chr3.4:75860945-75860964 | MS.gene69885:intron | 40.0% | |
CCATCTAAGTGGATCTATCT+TGG | - | chr3.4:75864040-75864059 | None:intergenic | 40.0% | |
GATACGATACGATACCGATA+CGG | - | chr3.4:75863898-75863917 | None:intergenic | 40.0% | |
GGAGTATAAGTAAGCTGTGT+CGG | - | chr3.4:75863307-75863326 | None:intergenic | 40.0% | |
TATCTCACCAAGAAACCCAA+AGG | + | chr3.4:75860458-75860477 | MS.gene69885:CDS | 40.0% | |
TCCTGCAAAAGAAAACAAGC+AGG | - | chr3.4:75862939-75862958 | None:intergenic | 40.0% | |
TGATGAGACATTCTTCCTTG+TGG | - | chr3.4:75862109-75862128 | None:intergenic | 40.0% | |
TGTAGAGGAAAAGACAGTCT+TGG | + | chr3.4:75861898-75861917 | MS.gene69885:intron | 40.0% | |
! | AAAGGAACCTTTGGGTTTCT+TGG | - | chr3.4:75860468-75860487 | None:intergenic | 40.0% |
! | AAGCTTTTACTTGGTTGGGT+TGG | - | chr3.4:75862459-75862478 | None:intergenic | 40.0% |
! | ATTTTCCCGTATCACCGTAT+CGG | + | chr3.4:75863881-75863900 | MS.gene69885:intron | 40.0% |
! | CCCAACCAAGTAAAAGCTTT+TGG | + | chr3.4:75862460-75862479 | MS.gene69885:CDS | 40.0% |
! | GCTGTTATTTGATTGGATGC+AGG | + | chr3.4:75861005-75861024 | MS.gene69885:intron | 40.0% |
! | GGATTTTCTGCAGAATCAGA+AGG | + | chr3.4:75860373-75860392 | MS.gene69885:CDS | 40.0% |
! | GTATCGGTATCGTATCGTAT+CGG | + | chr3.4:75863897-75863916 | MS.gene69885:intron | 40.0% |
! | TACGCGTATCGGAAAAGTAT+CGG | + | chr3.4:75863133-75863152 | MS.gene69885:intron | 40.0% |
! | TACTTTTCCGATACGCGTAT+CGG | - | chr3.4:75863132-75863151 | None:intergenic | 40.0% |
!! | ACACTCAATGAAGGTGTTAC+AGG | + | chr3.4:75861837-75861856 | MS.gene69885:intron | 40.0% |
!! | ACCTGCTTGTTTTCTTTTGC+AGG | + | chr3.4:75862935-75862954 | MS.gene69885:intron | 40.0% |
!! | GTCCTGTGGATTTTCTAGTA+TGG | - | chr3.4:75862647-75862666 | None:intergenic | 40.0% |
!!! | AAAGCTTTTGGAATGGTTGC+TGG | + | chr3.4:75862472-75862491 | MS.gene69885:CDS | 40.0% |
!!! | TCACCATTTTTGGAGTATCG+GGG | - | chr3.4:75863062-75863081 | None:intergenic | 40.0% |
AAGCCCCGATACTCCAAAAA+TGG | + | chr3.4:75863056-75863075 | MS.gene69885:intron | 45.0% | |
ACGATACCGATACGGTGATA+CGG | - | chr3.4:75863890-75863909 | None:intergenic | 45.0% | |
ACTCCACCATCCCATATTTC+TGG | - | chr3.4:75864121-75864140 | None:intergenic | 45.0% | |
ATACGCGTATCGGAACGTAT+CGG | - | chr3.4:75863122-75863141 | None:intergenic | 45.0% | |
ATACGTTCCGATACGCGTAT+CGG | + | chr3.4:75863122-75863141 | MS.gene69885:intron | 45.0% | |
ATCAAACCCTACTAAGGGCA+AGG | - | chr3.4:75861387-75861406 | None:intergenic | 45.0% | |
CACTTTAGTGAGATGCGTGA+AGG | + | chr3.4:75862127-75862146 | MS.gene69885:CDS | 45.0% | |
CCTCCCTGTTCTCCTAAATA+AGG | + | chr3.4:75861417-75861436 | MS.gene69885:intron | 45.0% | |
CTGTCAAATGCAACTGCTCT+AGG | + | chr3.4:75860856-75860875 | MS.gene69885:intron | 45.0% | |
CTTAGCTGTGAAAGGACCAA+AGG | + | chr3.4:75862156-75862175 | MS.gene69885:CDS | 45.0% | |
GAAGGTAGAGGTGATAACCA+TGG | + | chr3.4:75860391-75860410 | MS.gene69885:CDS | 45.0% | |
GCTAAAAAGGAATTAGGCGG+TGG | - | chr3.4:75861789-75861808 | None:intergenic | 45.0% | |
GGCGATTACTTAGCTGTGAA+AGG | + | chr3.4:75862148-75862167 | MS.gene69885:CDS | 45.0% | |
GTAGCTCTTGTTGCCATTCT+TGG | + | chr3.4:75860416-75860435 | MS.gene69885:CDS | 45.0% | |
GTTGGTACTTAAAACGTCCC+TGG | - | chr3.4:75862441-75862460 | None:intergenic | 45.0% | |
TACTTCTCCGATACGCGTAT+CGG | - | chr3.4:75863213-75863232 | None:intergenic | 45.0% | |
TCAAACCCTACTAAGGGCAA+GGG | - | chr3.4:75861386-75861405 | None:intergenic | 45.0% | |
TCTGCAGAATCAGAAGGTAG+AGG | + | chr3.4:75860379-75860398 | MS.gene69885:CDS | 45.0% | |
TCTGCAGCCACCAGAAATAT+GGG | + | chr3.4:75864108-75864127 | MS.gene69885:intron | 45.0% | |
TTGGACAACATATCAGCTGC+AGG | + | chr3.4:75861719-75861738 | MS.gene69885:CDS | 45.0% | |
! | AATCGGTGTTTGAGAGTGGA+GGG | - | chr3.4:75864228-75864247 | None:intergenic | 45.0% |
! | ACATTTCTTGCTAGGGTGCT+TGG | + | chr3.4:75861585-75861604 | MS.gene69885:intron | 45.0% |
! | CCTTATTTAGGAGAACAGGG+AGG | - | chr3.4:75861420-75861439 | None:intergenic | 45.0% |
! | GAATCTTGTGTAATGGGGCT+TGG | + | chr3.4:75861478-75861497 | MS.gene69885:intron | 45.0% |
! | TACGCGTATCGGAGAAGTAT+CGG | + | chr3.4:75863214-75863233 | MS.gene69885:intron | 45.0% |
! | TATCGGTATCGGATACGTGT+CGG | - | chr3.4:75863095-75863114 | None:intergenic | 45.0% |
! | TATCGTATCGGTATCGTGTC+AGG | + | chr3.4:75863909-75863928 | MS.gene69885:intron | 45.0% |
!! | ACGCGTATCGGAAAAGTATC+GGG | + | chr3.4:75863134-75863153 | MS.gene69885:intron | 45.0% |
!! | GAAATATGGGATGGTGGAGT+CGG | + | chr3.4:75864121-75864140 | MS.gene69885:CDS | 45.0% |
!!! | ATTTTTCTTTTTTTTTTTAA+AGG | - | chr3.4:75863358-75863377 | None:intergenic | 5.0% |
ACTTCTCCGATACGCGTATC+GGG | - | chr3.4:75863212-75863231 | None:intergenic | 50.0% | |
ATACGTCCCGATACGCGTAT+CGG | + | chr3.4:75863203-75863222 | MS.gene69885:intron | 50.0% | |
ATGACCTTAATATCCGGCGC+TGG | - | chr3.4:75864187-75864206 | None:intergenic | 50.0% | |
CAGCCACCAGAAATATGGGA+TGG | + | chr3.4:75864112-75864131 | MS.gene69885:intron | 50.0% | |
CCACCAGAAATATGGGATGG+TGG | + | chr3.4:75864115-75864134 | MS.gene69885:CDS | 50.0% | |
CCTACTCGTAGCTCAGTGTT+GGG | + | chr3.4:75861688-75861707 | MS.gene69885:CDS | 50.0% | |
CGATACCGATACGGTGATAC+GGG | - | chr3.4:75863889-75863908 | None:intergenic | 50.0% | |
CTACTCGTAGCTCAGTGTTG+GGG | + | chr3.4:75861689-75861708 | MS.gene69885:CDS | 50.0% | |
CTCTGCAGCCACCAGAAATA+TGG | + | chr3.4:75864107-75864126 | MS.gene69885:intron | 50.0% | |
GCTCTTGTTGCCATTCTTGG+TGG | + | chr3.4:75860419-75860438 | MS.gene69885:CDS | 50.0% | |
GTAAGCGGTACCACCAAGAA+TGG | - | chr3.4:75860432-75860451 | None:intergenic | 50.0% | |
GTATCGAGGCCGTATCGTAT+CGG | + | chr3.4:75863847-75863866 | MS.gene69885:intron | 50.0% | |
TACGCGTATCGGAACGTATC+GGG | - | chr3.4:75863121-75863140 | None:intergenic | 50.0% | |
TATCGAGGCCGTATCGTATC+GGG | + | chr3.4:75863848-75863867 | MS.gene69885:intron | 50.0% | |
TCCTACTCGTAGCTCAGTGT+TGG | + | chr3.4:75861687-75861706 | MS.gene69885:CDS | 50.0% | |
TGGAGTCGGATTCGTTTCCA+AGG | + | chr3.4:75864135-75864154 | MS.gene69885:CDS | 50.0% | |
TGGCATCACCCCAATGTTTC+AGG | + | chr3.4:75862501-75862520 | MS.gene69885:CDS | 50.0% | |
! | ATCGGTGTTTGAGAGTGGAG+GGG | - | chr3.4:75864227-75864246 | None:intergenic | 50.0% |
! | CTTGTGTAATGGGGCTTGGT+AGG | + | chr3.4:75861482-75861501 | MS.gene69885:intron | 50.0% |
! | GAATCGGTGTTTGAGAGTGG+AGG | - | chr3.4:75864229-75864248 | None:intergenic | 50.0% |
! | TCAGTGTTGGGGCTTCCTAT+TGG | + | chr3.4:75861700-75861719 | MS.gene69885:CDS | 50.0% |
! | TGGGAATCGGTGTTTGAGAG+TGG | - | chr3.4:75864232-75864251 | None:intergenic | 50.0% |
!! | ACGCGTATCGGAGAAGTATC+GGG | + | chr3.4:75863215-75863234 | MS.gene69885:intron | 50.0% |
!! | CCACCATCCCATATTTCTGG+TGG | - | chr3.4:75864118-75864137 | None:intergenic | 50.0% |
!!! | GCTTTTGGAATGGTTGCTGG+TGG | + | chr3.4:75862475-75862494 | MS.gene69885:CDS | 50.0% |
ACGCGTATCGGAACGTATCG+GGG | - | chr3.4:75863120-75863139 | None:intergenic | 55.0% | |
CCCAACACTGAGCTACGAGT+AGG | - | chr3.4:75861691-75861710 | None:intergenic | 55.0% | |
GCAGGAAGAGCTCGATGACT+TGG | + | chr3.4:75862953-75862972 | MS.gene69885:intron | 55.0% | |
GGATGCCCTTGCCCTTAGTA+GGG | + | chr3.4:75861378-75861397 | MS.gene69885:intron | 55.0% | |
GGCAACAAGAGCTACTGCCA+TGG | - | chr3.4:75860411-75860430 | None:intergenic | 55.0% | |
GGGACGTATCCGACACGTAT+CGG | - | chr3.4:75863192-75863211 | None:intergenic | 55.0% | |
GGGCATCAGATCAATCCACG+CGG | + | chr3.4:75860922-75860941 | MS.gene69885:intron | 55.0% | |
TGGATGCCCTTGCCCTTAGT+AGG | + | chr3.4:75861377-75861396 | MS.gene69885:intron | 55.0% | |
TTGAGAGTGGAGGGGTCACA+TGG | - | chr3.4:75864219-75864238 | None:intergenic | 55.0% | |
! | CGGTATCGTGTCAGGTATCG+AGG | + | chr3.4:75863917-75863936 | MS.gene69885:intron | 55.0% |
! | GTATCGGGGCGTATCGGTAT+CGG | - | chr3.4:75863106-75863125 | None:intergenic | 55.0% |
! | TGCACCAGCGCCGGATATTA+AGG | + | chr3.4:75864180-75864199 | MS.gene69885:CDS | 55.0% |
!! | CGTATCGGAGAAGTATCGGG+CGG | + | chr3.4:75863218-75863237 | MS.gene69885:intron | 55.0% |
!! | TAATATCCGGCGCTGGTGCA+GGG | - | chr3.4:75864180-75864199 | None:intergenic | 55.0% |
!! | TTAATATCCGGCGCTGGTGC+AGG | - | chr3.4:75864181-75864200 | None:intergenic | 55.0% |
ACAATTCCCTGCACCAGCGC+CGG | + | chr3.4:75864171-75864190 | MS.gene69885:CDS | 60.0% | |
ATTTACATGGCGTGGCCGCG+TGG | - | chr3.4:75860940-75860959 | None:intergenic | 60.0% | |
CGGAACGTATCGGGGCGTAT+CGG | - | chr3.4:75863112-75863131 | None:intergenic | 60.0% | |
GGAATGGTTGCTGGTGGCAC+TGG | + | chr3.4:75862481-75862500 | MS.gene69885:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.4 | gene | 75860371 | 75864261 | 75860371 | ID=MS.gene69885 |
chr3.4 | mRNA | 75860371 | 75864261 | 75860371 | ID=MS.gene69885.t1;Parent=MS.gene69885 |
chr3.4 | exon | 75860371 | 75860479 | 75860371 | ID=MS.gene69885.t1.exon1;Parent=MS.gene69885.t1 |
chr3.4 | CDS | 75860371 | 75860479 | 75860371 | ID=cds.MS.gene69885.t1;Parent=MS.gene69885.t1 |
chr3.4 | exon | 75861599 | 75861740 | 75861599 | ID=MS.gene69885.t1.exon2;Parent=MS.gene69885.t1 |
chr3.4 | CDS | 75861599 | 75861740 | 75861599 | ID=cds.MS.gene69885.t1;Parent=MS.gene69885.t1 |
chr3.4 | exon | 75861903 | 75861993 | 75861903 | ID=MS.gene69885.t1.exon3;Parent=MS.gene69885.t1 |
chr3.4 | CDS | 75861903 | 75861993 | 75861903 | ID=cds.MS.gene69885.t1;Parent=MS.gene69885.t1 |
chr3.4 | exon | 75862100 | 75862177 | 75862100 | ID=MS.gene69885.t1.exon4;Parent=MS.gene69885.t1 |
chr3.4 | CDS | 75862100 | 75862177 | 75862100 | ID=cds.MS.gene69885.t1;Parent=MS.gene69885.t1 |
chr3.4 | exon | 75862442 | 75862522 | 75862442 | ID=MS.gene69885.t1.exon5;Parent=MS.gene69885.t1 |
chr3.4 | CDS | 75862442 | 75862522 | 75862442 | ID=cds.MS.gene69885.t1;Parent=MS.gene69885.t1 |
chr3.4 | exon | 75862634 | 75862723 | 75862634 | ID=MS.gene69885.t1.exon6;Parent=MS.gene69885.t1 |
chr3.4 | CDS | 75862634 | 75862723 | 75862634 | ID=cds.MS.gene69885.t1;Parent=MS.gene69885.t1 |
chr3.4 | exon | 75862957 | 75863022 | 75862957 | ID=MS.gene69885.t1.exon7;Parent=MS.gene69885.t1 |
chr3.4 | CDS | 75862957 | 75863022 | 75862957 | ID=cds.MS.gene69885.t1;Parent=MS.gene69885.t1 |
chr3.4 | exon | 75864115 | 75864261 | 75864115 | ID=MS.gene69885.t1.exon8;Parent=MS.gene69885.t1 |
chr3.4 | CDS | 75864115 | 75864261 | 75864115 | ID=cds.MS.gene69885.t1;Parent=MS.gene69885.t1 |
Gene Sequence |
Protein sequence |