AlfalfaGEDB | MS.gene69885

M. sativa cultivar XinJiangDaYe / MS.gene69885

KEGG: K00326
GO: GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0016491 GO:0055114
PFAM: PF00175.24 PF00970.27

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69885.t1	XP_003601329.1	97.6	250	6	0	1	250	1	250	4.40E-140	507.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69885.t1	Q9ZNT1	76.2	235	56	0	16	250	19	253	4.3e-104	379.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69885.t1	G7J636	97.6	250	6	0	1	250	1	250	3.1e-140	507.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene059774	MS.gene69885	0.807082	6.01E-50	-1.69E-46
MS.gene060697	MS.gene69885	0.803813	2.91E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69885.t1	MTR_3g079510	97.600	250	6	0	1	250	1	250	0.0	509
MS.gene69885.t1	MTR_3g479590	97.600	250	6	0	1	250	1	250	0.0	509
MS.gene69885.t1	MTR_7g087090	72.400	250	69	0	1	250	1	250	9.32e-135	382
MS.gene69885.t1	MTR_8g044160	67.200	250	81	1	1	250	19	267	3.66e-124	355
MS.gene69885.t1	MTR_4g114030	43.798	258	117	7	16	250	32	284	1.11e-63	202
MS.gene69885.t1	MTR_5g059820	37.652	247	132	5	20	246	606	850	6.58e-45	161
MS.gene69885.t1	MTR_3g073180	37.991	229	118	6	39	246	643	868	4.15e-41	150
MS.gene69885.t1	MTR_3g073150	37.391	230	118	7	39	246	618	843	1.52e-39	146
MS.gene69885.t1	MTR_4g113900	38.298	94	50	2	95	186	91	178	2.53e-15	72.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69885.t1	AT5G17770	77.232	224	51	0	27	250	30	253	4.29e-130	370
MS.gene69885.t1	AT5G20080	43.651	252	122	6	17	250	38	287	6.45e-64	203
MS.gene69885.t1	AT1G37130	40.930	215	103	5	48	241	666	877	1.46e-43	158
MS.gene69885.t1	AT1G77760	36.744	215	112	5	48	241	666	877	5.12e-40	147

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Find 67 sgRNAs with CRISPR-Local

Find 237 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGAACCTTTGGGTTTCT+TGG	0.232453	3.4:-75860465	None:intergenic
AAATTATGACTGCTGGGAAT+CGG	0.562559	3.4:-75864242	None:intergenic
AACTGGGAAATTATGACTGC+TGG	0.418931	3.4:-75864249	None:intergenic
AATAAACTTTAAATCGATTT+GGG	0.325119	3.4:-75862986	None:intergenic
AATAATTAGATGTATCCACA+AGG	0.715861	3.4:+75862091	MS.gene69885:intron
AATCGGTGTTTGAGAGTGGA+GGG	0.587936	3.4:-75864225	None:intergenic
AATGTCATCATATGTGACAT+TGG	0.554025	3.4:-75862692	None:intergenic
ACAACATTGGATACTGATGT+TGG	0.552637	3.4:+75861949	MS.gene69885:CDS
ACAATTCCCTGCACCAGCGC+CGG	0.558529	3.4:+75864171	MS.gene69885:CDS
ACATCAGTATCCAATGTTGT+TGG	0.543426	3.4:-75861946	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGCTGATCATGCTAAAA+AGG	-	chr3.4:75861802-75861821	None:intergenic	30.0%
AACCAAAAATTCCATCTAAG+TGG	-	chr3.4:75864051-75864070	None:intergenic	30.0%
AAGCTCAAGTTATTAGGTTA+AGG	+	chr3.4:75862333-75862352	MS.gene69885:intron	30.0%
AAGTTTCTACATTTCTTGCT+AGG	+	chr3.4:75861577-75861596	MS.gene69885:intron	30.0%
AATGTCATCATATGTGACAT+TGG	-	chr3.4:75862695-75862714	None:intergenic	30.0%
ACATACAACGAAAACTACAA+AGG	-	chr3.4:75862741-75862760	None:intergenic	30.0%
AGACAAAAAAAAGGAACCTT+TGG	-	chr3.4:75860477-75860496	None:intergenic	30.0%
AGTACTTATGATGTTCTCTT+TGG	+	chr3.4:75863629-75863648	MS.gene69885:intron	30.0%
AGTTTCTACATTTCTTGCTA+GGG	+	chr3.4:75861578-75861597	MS.gene69885:intron	30.0%
ATAAAGGGTTTCTCAAACTA+TGG	+	chr3.4:75861357-75861376	MS.gene69885:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	75860371	75864261	75860371	ID=MS.gene69885
chr3.4	mRNA	75860371	75864261	75860371	ID=MS.gene69885.t1;Parent=MS.gene69885
chr3.4	exon	75860371	75860479	75860371	ID=MS.gene69885.t1.exon1;Parent=MS.gene69885.t1
chr3.4	CDS	75860371	75860479	75860371	ID=cds.MS.gene69885.t1;Parent=MS.gene69885.t1
chr3.4	exon	75861599	75861740	75861599	ID=MS.gene69885.t1.exon2;Parent=MS.gene69885.t1
chr3.4	CDS	75861599	75861740	75861599	ID=cds.MS.gene69885.t1;Parent=MS.gene69885.t1
chr3.4	exon	75861903	75861993	75861903	ID=MS.gene69885.t1.exon3;Parent=MS.gene69885.t1
chr3.4	CDS	75861903	75861993	75861903	ID=cds.MS.gene69885.t1;Parent=MS.gene69885.t1
chr3.4	exon	75862100	75862177	75862100	ID=MS.gene69885.t1.exon4;Parent=MS.gene69885.t1
chr3.4	CDS	75862100	75862177	75862100	ID=cds.MS.gene69885.t1;Parent=MS.gene69885.t1
chr3.4	exon	75862442	75862522	75862442	ID=MS.gene69885.t1.exon5;Parent=MS.gene69885.t1
chr3.4	CDS	75862442	75862522	75862442	ID=cds.MS.gene69885.t1;Parent=MS.gene69885.t1
chr3.4	exon	75862634	75862723	75862634	ID=MS.gene69885.t1.exon6;Parent=MS.gene69885.t1
chr3.4	CDS	75862634	75862723	75862634	ID=cds.MS.gene69885.t1;Parent=MS.gene69885.t1
chr3.4	exon	75862957	75863022	75862957	ID=MS.gene69885.t1.exon7;Parent=MS.gene69885.t1
chr3.4	CDS	75862957	75863022	75862957	ID=cds.MS.gene69885.t1;Parent=MS.gene69885.t1
chr3.4	exon	75864115	75864261	75864115	ID=MS.gene69885.t1.exon8;Parent=MS.gene69885.t1
chr3.4	CDS	75864115	75864261	75864115	ID=cds.MS.gene69885.t1;Parent=MS.gene69885.t1

Gene Sequence

>MS.gene69885

ATGGATTTTCTGCAGAATCAGAAGGTAGAGGTGATAACCATGGCAGTAGCTCTTGTTGCCATTCTTGGTGGTACCGCTTACTATTACTATCTCACCAAGAAACCCAAAGGTTCCTTTTTTTTGTCTTCTACCTTCTTTTTTATTCAAATCAAAGGGTTTTGTTTTTGTTCTAATTTATTCAAGAAAAATGTTTGTGTTTGTGTCTTAGTGGATGTGTCGTGCCAACTTTTTATTTGACATGTAGTTCTTGTTTGTTTCTGCAAAGTGATAAAAACAGAACTTTTTTCATGAAGGAATTTTTATTTATTTTTTATTTTGAGAAAAAGGAATATATGATATGGGTCTTTGTAAATTATAATCATTTTGAAGTCATTAAAATGAAAATTCTTGAAGAATCTTTCAATTTCATTTGCTCATAATATGACAATTTTATTTGTGTAGTTTTATGTATTTGGTGTACATGTGTATGTGTGTTATAATGTTCTCTGTCAAATGCAACTGCTCTAGGTTTAATTTATAGGATTTAATATCTATATAAAACTTTTTTACACGGGCATCAGATCAATCCACGCGGCCACGCCATGTAAATATATGTGGGAATATTTTAAAAACTAACTTGAGAAAGTGGCATTACGCTGTTATTTGATTGGATGCAGGAGTAAAAAAGTTTTACAGCATCAGTGCGTATAACTTAATCTCTAATTTATTATAATAATTGAAGTATAGTTGGTTCTTGACAGAGTTTCTAAATTCTGAAGTTCTAGTAGTAGTAATTTAGGTATGGTCTGAATTTAGAAAATGTTCTTCATTGATATATTTTGTTTAGTTTAGTTTTGATATACCGTCAGGTTAAAAAGTTTTACGATGTCAACAAATCACATTTTTATCGTTTCTCTATTTGCTATACAAATCTTGTAAGACAAGAATCAAAGTGAAAACACAATGGTATCTTTTGCAAGCAAAAGTGTAAACAGGAAATGAAAAAAATAAAGGGTTTCTCAAACTATGGATGCCCTTGCCCTTAGTAGGGTTTGATTTTTATTAATCCTCCCTGTTCTCCTAAATAAGGAAGTTGACCTATATATTGCCCACATTTCAAGCAAAAAAGAATCTTGTGTAATGGGGCTTGGTAGGTATAAATACCATTGATAACCCTTCATACAATAATTCAAGCTTTAGGGAGAAGTTATTTCTTAACAATAATTAAAGTTTCTACATTTCTTGCTAGGGTGCTTGGATCCTGATAATTTCAAGGAATTTAAACTTGTCAAACGCACTCAACAAAGTCATAATGTTGCAACATTCAGATTTTGTCTTCCTACTCGTAGCTCAGTGTTGGGGCTTCCTATTGGACAACATATCAGCTGCAGGTTTGCGTTTTGTTTGTTTTCTCTTTTACAATTCATTTCATAATGCCACCGCCTAATTCCTTTTTAGCATGATCAGCTTTTTGTGTTTACTGTTTCACACTCAATGAAGGTGTTACAGGCAACTATAATGCTTTCATTTTGAATATATCTGTTTTCTTGTAGAGGAAAAGACAGTCTTGGTGAAGAAGTAATCAAACCATATACACCAACAACATTGGATACTGATGTTGGATACTTTGAATTGGTTGTTAAGGTTACATACTACTAACTAATGCTTAGTATTTTATTTTTGTTAATCAACGTTCCTTTTTAAGTGTACATATTGATTTTTGCTAACTGTATTGTTTGCTAATAATTAGATGTATCCACAAGGAAGAATGTCTCATCACTTTAGTGAGATGCGTGAAGGCGATTACTTAGCTGTGAAAGGACCAAAGGTTCTTAAAATTCTTTCTCCATATCTGTTTTGAATAATTCATTGGCTAAATGTTATTTGAGTAGCTTCAATTATACTTTGACCATTACTGTATTAGCAAGTGAGTTTTAGTTGAACTGTGTTGGCCCAGTTAATAATTAAAGTTGTTACTCCAAAAAGCTCAAGTTATTAGGTTAAGGTTTATGAAGGTATCCATATACTAGGATTTTAGTATTCTAAATATATGCATTGCAAACTAGTTTGTAATATACTTTAATGTCTCCAGGGACGTTTTAAGTACCAACCCAACCAAGTAAAAGCTTTTGGAATGGTTGCTGGTGGCACTGGCATCACCCCAATGTTTCAGGTATTGAATATGCAAAGGATTATTGAGCTTCTGTTCCCTCCTTTGATCTTTCAATTTTTGCATTTTGAAACTTTGTATCCTTAATAATCACATTTATTATTTTTTGTTCAGGTTGCAAGAGCCATACTAGAAAATCCACAGGACAAAACCAATGTAAATTTGATATATGCCAATGTCACATATGATGACATTCTTCTAAAGGTAAATCTGCTAAACCTTTGTAGTTTTCGTTGTATGTTAACGTAAGTTGTATGGAAAAATCAAAAGAATTCATCTATGGGCATTTTGTTTTATTGAACAGACAAATATCTTTGGAAACTTAGTTGCAGAAATTAGTCAAATGAAAAATACGAATGGACCATAGTCTATAAATCTCAAGCCTGTATTATGGTTAAGAATTTATGTTTATATAACCTGCTTGTTTTCTTTTGCAGGAAGAGCTCGATGACTTGGCAATTAAATTCCCAAATCGATTTAAAGTTTATTATGTTCTAAATCAGGTAATCAAACTATTTTCAACTTCTTTTCTCTGCAAGCCCCGATACTCCAAAAATGGTGAAGTATCGTATCCGACACGTATCCGATACCGATACGCCCCGATACGTTCCGATACGCGTATCGGAAAAGTATCGGGCAATTAATATTTATTTTTTTGAAAAACAATGACCGATACGTGTCGGATACGTCCCGATACGCGTATCGGAGAAGTATCGGGCGGTTAATATTTATTTTTTGAAGGAAAAAAATGACTGGTACGTGTCGGATACGACTAACTTGTACTCCGACACAGCTTACTTATACTCCGACACCTATACTTCTGTCTTACATATTTCCTTTAAAAAAAAAAAGAAAAATAAAATAATAAGAAATAAAACTACAAATCTGACAGCGCTATCAAAATCATATTGTCTCTTCTAACCTAAAAAAATAGGGTTTCTCGTCACCACATAGCAATAGCTATTCTCTCTTCTAACCACTACCACTGATTGAATTCTACTCTGTTTCTCTTCTCTCTAATGTTATGTTTCTTCTGCTGTTTGTTTTCGATATAAATTAGTGTTAACTGTTAAGTAGTCAACATTAGACAAAGATGTTCTTTTTTTTATAGTACTTATGATGTTCTCTTTGGATGGTACTAATGATGTTTAGCTATATTCTATCTAATTTGTGCGGAAAAAATATGTAATTGTCACTTGTTTTGATCATTTTCATTAATGTTTTTTTTTTTTTTTGACAAAATTTTCATTAATGTGAATGTTTGTTTATTATCATTTTTAGTTATGTTTATACATTCTATTAATTTTAAATTTAATTTTTTAATAACGTATCGAGGCCGTATCGTATCGGGAATTTTGAAAATTTTCCCGTATCACCGTATCGGTATCGTATCGTATCGGTATCGTGTCAGGTATCGAGGCTTCATACTGCAGCTATTCAATCAGTCTGACACTACCATTCGTTTTTCCTTTTTCTATGCAAATTTGGAGTCAAAATTAATCCTTCATTTTTTGTCACCAAGATAGATCCACTTAGATGGAATTTTTGGTTTAAATGTATTCTCATGTTGGTTTTGAATGCAATATACTCTGCAGCCACCAGAAATATGGGATGGTGGAGTCGGATTCGTTTCCAAGGAAATGATTGAAACACAATTCCCTGCACCAGCGCCGGATATTAAGGTCATTTTTGAACACCATGTGACCCCTCCACTCTCAAACACCGATTCCCAGCAGTCATAA

Protein sequence

>MS.gene69885.t1

MDFLQNQKVEVITMAVALVAILGGTAYYYYLTKKPKGCLDPDNFKEFKLVKRTQQSHNVATFRFCLPTRSSVLGLPIGQHISCRGKDSLGEEVIKPYTPTTLDTDVGYFELVVKMYPQGRMSHHFSEMREGDYLAVKGPKGRFKYQPNQVKAFGMVAGGTGITPMFQVARAILENPQDKTNVNLIYANVTYDDILLKEELDDLAIKFPNRFKVYYVLNQPPEIWDGGVGFVSKEMIETQFPAPAPDIKVIFEHHVTPPLSNTDSQQS