Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69919.t1 | XP_024637976.1 | 93.5 | 170 | 10 | 1 | 1 | 169 | 1 | 170 | 5.30E-83 | 317 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69919.t1 | Q94BU8 | 57.2 | 159 | 62 | 2 | 10 | 162 | 25 | 183 | 1.4e-47 | 190.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69919.t1 | A0A396JWV1 | 96.2 | 158 | 6 | 0 | 12 | 169 | 25 | 182 | 2.1e-81 | 311.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055331 | MS.gene69919 | 0.814971 | 1.17E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69919.t1 | MTR_1g081450 | 71.622 | 222 | 10 | 2 | 1 | 169 | 1 | 222 | 4.16e-105 | 300 |
| MS.gene69919.t1 | MTR_1g081420 | 81.761 | 159 | 28 | 1 | 1 | 158 | 1 | 159 | 4.17e-93 | 270 |
| MS.gene69919.t1 | MTR_1g081550 | 69.032 | 155 | 42 | 2 | 12 | 160 | 11 | 165 | 1.43e-74 | 221 |
| MS.gene69919.t1 | MTR_2g045280 | 60.976 | 164 | 58 | 2 | 5 | 162 | 35 | 198 | 1.75e-67 | 204 |
| MS.gene69919.t1 | MTR_4g124190 | 59.756 | 164 | 60 | 2 | 5 | 162 | 21 | 184 | 1.28e-66 | 201 |
| MS.gene69919.t1 | MTR_3g005755 | 52.318 | 151 | 42 | 4 | 10 | 160 | 75 | 195 | 1.07e-38 | 134 |
| MS.gene69919.t1 | MTR_1g081440 | 61.290 | 62 | 18 | 1 | 12 | 73 | 18 | 73 | 1.77e-19 | 78.6 |
| MS.gene69919.t1 | MTR_4g012000 | 38.710 | 93 | 55 | 1 | 24 | 114 | 861 | 953 | 3.76e-13 | 66.6 |
| MS.gene69919.t1 | MTR_4g012000 | 38.710 | 93 | 55 | 1 | 24 | 114 | 861 | 953 | 3.83e-13 | 66.6 |
| MS.gene69919.t1 | MTR_4g012000 | 38.710 | 93 | 55 | 1 | 24 | 114 | 1054 | 1146 | 5.61e-13 | 66.2 |
| MS.gene69919.t1 | MTR_4g012000 | 38.710 | 93 | 55 | 1 | 24 | 114 | 1054 | 1146 | 5.83e-13 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69919.t1 | AT5G28050 | 56.875 | 160 | 63 | 2 | 9 | 162 | 24 | 183 | 4.74e-64 | 195 |
| MS.gene69919.t1 | AT5G28050 | 56.875 | 160 | 63 | 2 | 9 | 162 | 43 | 202 | 7.87e-64 | 195 |
| MS.gene69919.t1 | AT5G28050 | 56.875 | 160 | 63 | 2 | 9 | 162 | 129 | 288 | 3.50e-63 | 196 |
| MS.gene69919.t1 | AT3G05300 | 54.464 | 112 | 42 | 3 | 55 | 160 | 1 | 109 | 3.25e-36 | 122 |
| MS.gene69919.t1 | AT1G68720 | 37.736 | 106 | 63 | 2 | 11 | 114 | 1104 | 1208 | 5.83e-15 | 72.0 |
Find 23 sgRNAs with CRISPR-Local
Find 223 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGGATAATGTTTCCCTTGC+TGG | 0.253633 | 1.4:+66024041 | MS.gene69919:CDS |
| ATCAAGCAGAGAATGGTTTA+TGG | 0.295789 | 1.4:+66024222 | MS.gene69919:intron |
| GGAGAAGCTGCAAGATCAAT+TGG | 0.414708 | 1.4:+66024252 | MS.gene69919:CDS |
| CGAACAATCAGTGCACCATA+TGG | 0.427952 | 1.4:-66022701 | None:intergenic |
| GAACCTTGTCCAATGTGCTT+TGG | 0.452078 | 1.4:+66024086 | MS.gene69919:CDS |
| GCATATGAAGCTGTTGAATC+TGG | 0.453061 | 1.4:+66022668 | MS.gene69919:CDS |
| CATGCTGCTGCAAGTGCAAA+CGG | 0.503042 | 1.4:+66020551 | MS.gene69919:CDS |
| TTTAGTAATTATATTGGCAA+GGG | 0.530272 | 1.4:+66024276 | MS.gene69919:CDS |
| GAACAATCAGTGCACCATAT+GGG | 0.543114 | 1.4:-66022700 | None:intergenic |
| ATGATCTCAGCATGAGCAGT+TGG | 0.550399 | 1.4:-66022776 | None:intergenic |
| TGATCTTGCAGCTTCTCCTG+TGG | 0.555500 | 1.4:-66024247 | None:intergenic |
| AGAATGGTTTATGGAGCCAC+AGG | 0.555557 | 1.4:+66024231 | MS.gene69919:CDS |
| GAAGACAAAGGACAAGGTAA+AGG | 0.557065 | 1.4:+66024371 | MS.gene69919:CDS |
| TCTGGTGATGGATACCCATA+TGG | 0.575775 | 1.4:+66022686 | MS.gene69919:CDS |
| TCTCATTATACCAGCTGCAG+AGG | 0.577400 | 1.4:+66022607 | MS.gene69919:intron |
| TGAATAGCACCAAAGCACAT+TGG | 0.603526 | 1.4:-66024095 | None:intergenic |
| AGAAGTATTTGAGAAGACAA+AGG | 0.606818 | 1.4:+66024359 | MS.gene69919:CDS |
| GAAGCTGTTGAATCTGGTGA+TGG | 0.621594 | 1.4:+66022674 | MS.gene69919:CDS |
| TGTACATTTCACAGCCAGCA+AGG | 0.622518 | 1.4:-66024055 | None:intergenic |
| GTACATTTCACAGCCAGCAA+GGG | 0.636395 | 1.4:-66024054 | None:intergenic |
| GCACCAAAGCACATTGGACA+AGG | 0.643218 | 1.4:-66024089 | None:intergenic |
| ATTTGAGAAGACAAAGGACA+AGG | 0.678760 | 1.4:+66024365 | MS.gene69919:CDS |
| TGAGATCATTGCTATAAGAG+AGG | 0.679141 | 1.4:+66022790 | MS.gene69919:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTTATTTGAAATTTAAAAT+AGG | + | chr1.4:66021030-66021049 | MS.gene69919:intron | 10.0% |
| !!! | TTACTTTTTTTTTTTTGAAA+CGG | - | chr1.4:66023777-66023796 | None:intergenic | 10.0% |
| !! | AAAAAACACAAAATAACAAA+TGG | - | chr1.4:66023159-66023178 | None:intergenic | 15.0% |
| !! | AAATATAGTTCAAATTTCAT+CGG | + | chr1.4:66023366-66023385 | MS.gene69919:intron | 15.0% |
| !! | ATTGAAAAAATATGATTGAT+TGG | + | chr1.4:66022332-66022351 | MS.gene69919:intron | 15.0% |
| !! | GAACTTTATTATTCAATATT+AGG | - | chr1.4:66021910-66021929 | None:intergenic | 15.0% |
| !! | TAATTGGTTAAAATTTATAC+AGG | - | chr1.4:66022248-66022267 | None:intergenic | 15.0% |
| !!! | AAATGTGTGATTTTTTTTAA+TGG | - | chr1.4:66023007-66023026 | None:intergenic | 15.0% |
| !!! | ATTGGTTTTAGTAATTATAT+TGG | + | chr1.4:66024270-66024289 | MS.gene69919:CDS | 15.0% |
| !!! | TAACTTCGTTAATATTTTAA+AGG | - | chr1.4:66021360-66021379 | None:intergenic | 15.0% |
| !!! | TATTCATTTTTCAAAAATCA+AGG | + | chr1.4:66024112-66024131 | MS.gene69919:CDS | 15.0% |
| !!! | TCTAACACATTTAATTTAAT+TGG | - | chr1.4:66022264-66022283 | None:intergenic | 15.0% |
| !!! | TTTAAAATATTAACGAAGTT+AGG | + | chr1.4:66021359-66021378 | MS.gene69919:intron | 15.0% |
| !!! | TTTTTTTTTTTTTGTCTTGA+GGG | + | chr1.4:66021222-66021241 | MS.gene69919:intron | 15.0% |
| !! | AAAAATGAGATCATTCAATT+TGG | - | chr1.4:66020747-66020766 | None:intergenic | 20.0% |
| !! | AATTTGAACTATATTTCATG+AGG | - | chr1.4:66023362-66023381 | None:intergenic | 20.0% |
| !! | ATGAGTTATCATTTAGATTA+TGG | + | chr1.4:66020706-66020725 | MS.gene69919:intron | 20.0% |
| !! | ATTATGCTGAAATTTGAAAA+GGG | + | chr1.4:66022524-66022543 | MS.gene69919:intron | 20.0% |
| !! | ATTCCAATTAGTATAACATA+AGG | - | chr1.4:66023999-66024018 | None:intergenic | 20.0% |
| !! | ATTTGAATAACAAATTGAGA+AGG | + | chr1.4:66023890-66023909 | MS.gene69919:intron | 20.0% |
| !! | TAAACAGAAATAATGATATC+TGG | + | chr1.4:66023228-66023247 | MS.gene69919:intron | 20.0% |
| !! | TATTATGCTGAAATTTGAAA+AGG | + | chr1.4:66022523-66022542 | MS.gene69919:intron | 20.0% |
| !! | TTACCTTATGTTATACTAAT+TGG | + | chr1.4:66023993-66024012 | MS.gene69919:intron | 20.0% |
| !! | TTTAGTAATTATATTGGCAA+GGG | + | chr1.4:66024276-66024295 | MS.gene69919:CDS | 20.0% |
| !!! | AATAGTTTGTTAAATGAAAG+AGG | + | chr1.4:66023037-66023056 | MS.gene69919:intron | 20.0% |
| !!! | CAGATTTTATTATGAACTTT+TGG | - | chr1.4:66022640-66022659 | None:intergenic | 20.0% |
| !!! | GTAGTTTTTTTCTTTCTTAA+GGG | + | chr1.4:66021285-66021304 | MS.gene69919:intron | 20.0% |
| !!! | GTTTTGTAGTTTTTTTCTTA+GGG | - | chr1.4:66021106-66021125 | None:intergenic | 20.0% |
| !!! | GTTTTTTTTTTTTTGTCTTG+AGG | + | chr1.4:66021221-66021240 | MS.gene69919:intron | 20.0% |
| !!! | TAGTTTTTTTCTTTCTTAAG+GGG | + | chr1.4:66021286-66021305 | MS.gene69919:intron | 20.0% |
| !!! | TGTAGTTTTTTTCTTTCTTA+AGG | + | chr1.4:66021284-66021303 | MS.gene69919:intron | 20.0% |
| !!! | TTTTAGTAATTATATTGGCA+AGG | + | chr1.4:66024275-66024294 | MS.gene69919:CDS | 20.0% |
| !!! | TTTTTTTTTTTTGTCTTGAG+GGG | + | chr1.4:66021223-66021242 | MS.gene69919:intron | 20.0% |
| ! | AAAATATCAATGTGTCTATG+AGG | + | chr1.4:66023317-66023336 | MS.gene69919:intron | 25.0% |
| ! | AACAAAATCGAAATACAAAC+AGG | - | chr1.4:66023702-66023721 | None:intergenic | 25.0% |
| ! | AGAAATAATGATATCTGGAT+TGG | + | chr1.4:66023233-66023252 | MS.gene69919:intron | 25.0% |
| ! | ATGCCAAAGTAAAGAATTTA+GGG | - | chr1.4:66023199-66023218 | None:intergenic | 25.0% |
| ! | GACAAAAAAAAAAAAACACG+TGG | - | chr1.4:66021218-66021237 | None:intergenic | 25.0% |
| ! | GCATTATTCAATCAACAAAA+AGG | - | chr1.4:66022008-66022027 | None:intergenic | 25.0% |
| ! | GTATTATGCAAAATGTATAC+TGG | + | chr1.4:66022409-66022428 | MS.gene69919:intron | 25.0% |
| ! | TATGCCAAAGTAAAGAATTT+AGG | - | chr1.4:66023200-66023219 | None:intergenic | 25.0% |
| ! | TGAATACTAACATTTGTCAT+TGG | - | chr1.4:66022068-66022087 | None:intergenic | 25.0% |
| ! | TTATTACTAACACCAAATTG+TGG | - | chr1.4:66020663-66020682 | None:intergenic | 25.0% |
| ! | TTCGAGATAAAAAAGATAGA+TGG | + | chr1.4:66024315-66024334 | MS.gene69919:CDS | 25.0% |
| !! | AAATTTTATTAGGCAGAACT+CGG | - | chr1.4:66023752-66023771 | None:intergenic | 25.0% |
| !! | AATACTTAGAAGTACATTTC+AGG | - | chr1.4:66022586-66022605 | None:intergenic | 25.0% |
| !! | ATAACTCATAAAAGTGTAAG+TGG | - | chr1.4:66020695-66020714 | None:intergenic | 25.0% |
| !! | GTAACTTTGAAAAAGTTAGA+GGG | + | chr1.4:66021317-66021336 | MS.gene69919:intron | 25.0% |
| !! | TGAAACGGCTAAATTTTATT+AGG | - | chr1.4:66023762-66023781 | None:intergenic | 25.0% |
| !!! | CTTCATATATTATCGCTTTT+TGG | + | chr1.4:66021731-66021750 | MS.gene69919:intron | 25.0% |
| !!! | CTTTTTCAAAGTTACGATTT+TGG | - | chr1.4:66021312-66021331 | None:intergenic | 25.0% |
| !!! | GGTTTTGTAGTTTTTTTCTT+AGG | - | chr1.4:66021107-66021126 | None:intergenic | 25.0% |
| !!! | TTCTAACTTTTAACTCAAAC+CGG | + | chr1.4:66022144-66022163 | MS.gene69919:intron | 25.0% |
| AAATGTGTTGAAGAGTTCAT+TGG | - | chr1.4:66022038-66022057 | None:intergenic | 30.0% | |
| AACTACTACTTGCATTACTA+TGG | + | chr1.4:66021827-66021846 | MS.gene69919:intron | 30.0% | |
| AAGAATTTAGGGAGAAACAA+AGG | - | chr1.4:66023188-66023207 | None:intergenic | 30.0% | |
| ACAGTTGTTTGTACTTTGAA+TGG | + | chr1.4:66023391-66023410 | MS.gene69919:intron | 30.0% | |
| ATGATTGATATGGTTGAATG+AGG | + | chr1.4:66023115-66023134 | MS.gene69919:intron | 30.0% | |
| CTAAGTGATTAAAAGAGTTG+AGG | + | chr1.4:66022907-66022926 | MS.gene69919:intron | 30.0% | |
| GAATAACAAATTGAGAAGGT+TGG | + | chr1.4:66023894-66023913 | MS.gene69919:intron | 30.0% | |
| GACTCATTTAACTATTTCAC+AGG | + | chr1.4:66022387-66022406 | MS.gene69919:intron | 30.0% | |
| GCAAAACACAAAAAAACAGA+TGG | - | chr1.4:66023483-66023502 | None:intergenic | 30.0% | |
| GTTTCCAACAATGATTGATA+TGG | + | chr1.4:66023105-66023124 | MS.gene69919:intron | 30.0% | |
| TATTGTGAAGACAAAATGAG+AGG | - | chr1.4:66024151-66024170 | None:intergenic | 30.0% | |
| TCAACCATATCAATCATTGT+TGG | - | chr1.4:66023112-66023131 | None:intergenic | 30.0% | |
| TCATTCTTTCTATACCATCA+TGG | + | chr1.4:66021654-66021673 | MS.gene69919:intron | 30.0% | |
| TCGTTAAAAGTTTCTCAACT+AGG | - | chr1.4:66021004-66021023 | None:intergenic | 30.0% | |
| TCTCAATAACAAGTCAAAGA+CGG | + | chr1.4:66021601-66021620 | MS.gene69919:intron | 30.0% | |
| TCTCCCTAAATTCTTTACTT+TGG | + | chr1.4:66023193-66023212 | MS.gene69919:intron | 30.0% | |
| TGATTGATATGGTTGAATGA+GGG | + | chr1.4:66023116-66023135 | MS.gene69919:intron | 30.0% | |
| TTGTTAAATGAAAGAGGTCT+TGG | + | chr1.4:66023043-66023062 | MS.gene69919:intron | 30.0% | |
| ! | CGTAACTTTGAAAAAGTTAG+AGG | + | chr1.4:66021316-66021335 | MS.gene69919:intron | 30.0% |
| ! | TGCTGAATGTTCATTTTGTT+TGG | + | chr1.4:66023931-66023950 | MS.gene69919:intron | 30.0% |
| !! | AGAAGTATTTGAGAAGACAA+AGG | + | chr1.4:66024359-66024378 | MS.gene69919:CDS | 30.0% |
| !! | ATATCTGGATTGGTATAATC+TGG | + | chr1.4:66023243-66023262 | MS.gene69919:intron | 30.0% |
| !! | CAGCTTTTGTTATGAACTTT+TGG | - | chr1.4:66020790-66020809 | None:intergenic | 30.0% |
| !!! | TCTGTTTTTTTGTGTTTTGC+TGG | + | chr1.4:66023483-66023502 | MS.gene69919:intron | 30.0% |
| AATTAAGTACTCTGCTAGAG+AGG | - | chr1.4:66022184-66022203 | None:intergenic | 35.0% | |
| ACACAGCTAAATTGATCACA+GGG | - | chr1.4:66021411-66021430 | None:intergenic | 35.0% | |
| ACTAATTGGAATTTACCTGC+AGG | + | chr1.4:66024007-66024026 | MS.gene69919:intron | 35.0% | |
| ATCAAGCAGAGAATGGTTTA+TGG | + | chr1.4:66024222-66024241 | MS.gene69919:intron | 35.0% | |
| ATCATTGTTGGAAACCAAAG+TGG | - | chr1.4:66023100-66023119 | None:intergenic | 35.0% | |
| ATTTGAGAAGACAAAGGACA+AGG | + | chr1.4:66024365-66024384 | MS.gene69919:CDS | 35.0% | |
| CAAAAAACAGACTACAGAAG+TGG | - | chr1.4:66023559-66023578 | None:intergenic | 35.0% | |
| CAATAGCGACTAAACTACTT+TGG | - | chr1.4:66022456-66022475 | None:intergenic | 35.0% | |
| CTCAATAACAAGTCAAAGAC+GGG | + | chr1.4:66021602-66021621 | MS.gene69919:intron | 35.0% | |
| CTTTCCTAAAGTTGCGATTT+CGG | + | chr1.4:66021078-66021097 | MS.gene69919:intron | 35.0% | |
| GAACAATGATTGCACCAAAT+GGG | - | chr1.4:66020855-66020874 | None:intergenic | 35.0% | |
| GAACACAGTAAAGAAGGTAA+TGG | - | chr1.4:66021779-66021798 | None:intergenic | 35.0% | |
| GAAGTAGAACACAGTAAAGA+AGG | - | chr1.4:66021785-66021804 | None:intergenic | 35.0% | |
| GTAATCTGACATTTCTCTGA+GGG | + | chr1.4:66022861-66022880 | MS.gene69919:intron | 35.0% | |
| GTAGAAGCAAAATCAACAAG+AGG | - | chr1.4:66022311-66022330 | None:intergenic | 35.0% | |
| GTTAGAAGAGTTTGATGTCT+TGG | - | chr1.4:66022131-66022150 | None:intergenic | 35.0% | |
| GTTTGTACTTTGAATGGTGT+TGG | + | chr1.4:66023397-66023416 | MS.gene69919:intron | 35.0% | |
| TACACAGCTAAATTGATCAC+AGG | - | chr1.4:66021412-66021431 | None:intergenic | 35.0% | |
| TACTACTTGCATTACTATGG+AGG | + | chr1.4:66021830-66021849 | MS.gene69919:intron | 35.0% | |
| TATTCAAACGATGAACACGT+TGG | + | chr1.4:66021535-66021554 | MS.gene69919:intron | 35.0% | |
| TATTCACATCAAGCAGAGAA+TGG | + | chr1.4:66024215-66024234 | MS.gene69919:intron | 35.0% | |
| TCATATACCATCTGCTGTAT+CGG | + | chr1.4:66023827-66023846 | MS.gene69919:intron | 35.0% | |
| TCTTAAATATCACGCCACTT+TGG | + | chr1.4:66023074-66023093 | MS.gene69919:intron | 35.0% | |
| TGAGATCATTGCTATAAGAG+AGG | + | chr1.4:66022790-66022809 | MS.gene69919:CDS | 35.0% | |
| TGCTACAGTTGCAAAACTTA+GGG | + | chr1.4:66021253-66021272 | MS.gene69919:intron | 35.0% | |
| TGTAATCTGACATTTCTCTG+AGG | + | chr1.4:66022860-66022879 | MS.gene69919:intron | 35.0% | |
| TTAGTATTACCATTAGCAGC+AGG | - | chr1.4:66021700-66021719 | None:intergenic | 35.0% | |
| ! | ATCGCAACTTTAGGAAAGTT+AGG | - | chr1.4:66021076-66021095 | None:intergenic | 35.0% |
| ! | ATCTCAGTATCAGAGAGTTT+TGG | + | chr1.4:66023860-66023879 | MS.gene69919:intron | 35.0% |
| ! | TATTTTGCACCTACCACTTA+TGG | - | chr1.4:66022479-66022498 | None:intergenic | 35.0% |
| ! | TCGCAACTTTAGGAAAGTTA+GGG | - | chr1.4:66021075-66021094 | None:intergenic | 35.0% |
| ! | TCTCTAGCAGAGTACTTAAT+TGG | + | chr1.4:66022183-66022202 | MS.gene69919:intron | 35.0% |
| ! | TTTCCATGTTTGGAGTTTGT+AGG | + | chr1.4:66023652-66023671 | MS.gene69919:intron | 35.0% |
| ! | TTTTGCAACTGTAGCAGTTT+TGG | - | chr1.4:66021249-66021268 | None:intergenic | 35.0% |
| ! | TTTTGTTCCTTTGCGTTCTT+TGG | + | chr1.4:66023715-66023734 | MS.gene69919:intron | 35.0% |
| !! | CTGTTTTGTTGGGTTTTCTT+TGG | + | chr1.4:66023506-66023525 | MS.gene69919:intron | 35.0% |
| !!! | CACTTCTGTAGTCTGTTTTT+TGG | + | chr1.4:66023557-66023576 | MS.gene69919:intron | 35.0% |
| !!! | CAGCTTTTGTTTTCCATGTT+TGG | + | chr1.4:66023642-66023661 | MS.gene69919:intron | 35.0% |
| !!! | GACGTGTTCTGTTTTTTGTT+CGG | + | chr1.4:66023674-66023693 | MS.gene69919:intron | 35.0% |
| AAATGAGTCACTCGTTCTCT+AGG | - | chr1.4:66022376-66022395 | None:intergenic | 40.0% | |
| ATTGTGGAACACACTAAGGA+CGG | - | chr1.4:66020647-66020666 | None:intergenic | 40.0% | |
| CAGATGGTATATGATTCGTC+AGG | - | chr1.4:66023821-66023840 | None:intergenic | 40.0% | |
| CCAAATTGTGGAACACACTA+AGG | - | chr1.4:66020651-66020670 | None:intergenic | 40.0% | |
| CCTTAGTGTGTTCCACAATT+TGG | + | chr1.4:66020648-66020667 | MS.gene69919:intron | 40.0% | |
| CGAACAATGATTGCACCAAA+TGG | - | chr1.4:66020856-66020875 | None:intergenic | 40.0% | |
| CTATAACAACTAGCAAAGCC+TGG | - | chr1.4:66023619-66023638 | None:intergenic | 40.0% | |
| CTGCTACAGTTGCAAAACTT+AGG | + | chr1.4:66021252-66021271 | MS.gene69919:intron | 40.0% | |
| GAACAATCAGTGCACCATAT+GGG | - | chr1.4:66022703-66022722 | None:intergenic | 40.0% | |
| GAAGACAAAGGACAAGGTAA+AGG | + | chr1.4:66024371-66024390 | MS.gene69919:CDS | 40.0% | |
| GATATGGTTGAATGAGGGAT+TGG | + | chr1.4:66023121-66023140 | MS.gene69919:intron | 40.0% | |
| GCATATGAAGCTGTTGAATC+TGG | + | chr1.4:66022668-66022687 | MS.gene69919:CDS | 40.0% | |
| GCTACAGTTGCAAAACTTAG+GGG | + | chr1.4:66021254-66021273 | MS.gene69919:intron | 40.0% | |
| TACGGAAAAACATGAGTCAG+AGG | - | chr1.4:66021482-66021501 | None:intergenic | 40.0% | |
| TGAAAAGGGTCGATGATTGT+GGG | + | chr1.4:66022538-66022557 | MS.gene69919:intron | 40.0% | |
| TGAATAGCACCAAAGCACAT+TGG | - | chr1.4:66024098-66024117 | None:intergenic | 40.0% | |
| TGCCACAGTTGCAAAACATA+GGG | - | chr1.4:66021133-66021152 | None:intergenic | 40.0% | |
| TGTGTTGAAGAGTTCATTGG+TGG | - | chr1.4:66022035-66022054 | None:intergenic | 40.0% | |
| TTAGTCGCTATTGCCATAAG+TGG | + | chr1.4:66022463-66022482 | MS.gene69919:intron | 40.0% | |
| TTGAAAAGGGTCGATGATTG+TGG | + | chr1.4:66022537-66022556 | MS.gene69919:intron | 40.0% | |
| ! | AGAGGTTTGGTAAGTTCAAC+CGG | - | chr1.4:66022166-66022185 | None:intergenic | 40.0% |
| ! | CGCAACTTTAGGAAAGTTAG+GGG | - | chr1.4:66021074-66021093 | None:intergenic | 40.0% |
| ! | GCAACTTTAGGAAAGTTAGG+GGG | - | chr1.4:66021073-66021092 | None:intergenic | 40.0% |
| ! | GCTGTTGAAGAAGCATACAA+AGG | + | chr1.4:66020806-66020825 | MS.gene69919:intron | 40.0% |
| ! | TCTATGAGGTGTTAACTCAG+TGG | + | chr1.4:66023331-66023350 | MS.gene69919:intron | 40.0% |
| ! | TTTTGCAACTGTGGCAGTTT+TGG | + | chr1.4:66021137-66021156 | MS.gene69919:intron | 40.0% |
| !! | AGGTGTTGAATGTGGTGATA+TGG | + | chr1.4:66020826-66020845 | MS.gene69919:intron | 40.0% |
| !! | GCATACAAAGGTGTTGAATG+TGG | + | chr1.4:66020818-66020837 | MS.gene69919:intron | 40.0% |
| !! | GTTTTGCTGGCTGTTTTGTT+GGG | + | chr1.4:66023496-66023515 | MS.gene69919:intron | 40.0% |
| !! | TGTTTTGCTGGCTGTTTTGT+TGG | + | chr1.4:66023495-66023514 | MS.gene69919:intron | 40.0% |
| ACAGGTACCACCAAATCATG+TGG | - | chr1.4:66022230-66022249 | None:intergenic | 45.0% | |
| AGAATGGTTTATGGAGCCAC+AGG | + | chr1.4:66024231-66024250 | MS.gene69919:CDS | 45.0% | |
| AGCGTAGACCGAGTCAAAAT+TGG | - | chr1.4:66021172-66021191 | None:intergenic | 45.0% | |
| AGTACTCTGCTAGAGAGGTT+TGG | - | chr1.4:66022179-66022198 | None:intergenic | 45.0% | |
| ATGATCTCAGCATGAGCAGT+TGG | - | chr1.4:66022779-66022798 | None:intergenic | 45.0% | |
| ATGTTTCCGGAGATAGCTGT+TGG | + | chr1.4:66023431-66023450 | MS.gene69919:intron | 45.0% | |
| CATCATGGAACATGATGCTG+CGG | + | chr1.4:66021669-66021688 | MS.gene69919:intron | 45.0% | |
| CCACAGTTGCAAAACATAGG+GGG | - | chr1.4:66021131-66021150 | None:intergenic | 45.0% | |
| CGAACAATCAGTGCACCATA+TGG | - | chr1.4:66022704-66022723 | None:intergenic | 45.0% | |
| CGTCCTACAAACTCCAAACA+TGG | - | chr1.4:66023658-66023677 | None:intergenic | 45.0% | |
| CTGCCACAGTTGCAAAACAT+AGG | - | chr1.4:66021134-66021153 | None:intergenic | 45.0% | |
| CTGGATAATGTTTCCCTTGC+TGG | + | chr1.4:66024041-66024060 | MS.gene69919:CDS | 45.0% | |
| GAACCTTGTCCAATGTGCTT+TGG | + | chr1.4:66024086-66024105 | MS.gene69919:CDS | 45.0% | |
| GAAGCTGTTGAATCTGGTGA+TGG | + | chr1.4:66022674-66022693 | MS.gene69919:CDS | 45.0% | |
| GCCACAGTTGCAAAACATAG+GGG | - | chr1.4:66021132-66021151 | None:intergenic | 45.0% | |
| GGAGAAGCTGCAAGATCAAT+TGG | + | chr1.4:66024252-66024271 | MS.gene69919:CDS | 45.0% | |
| GTACATTTCACAGCCAGCAA+GGG | - | chr1.4:66024057-66024076 | None:intergenic | 45.0% | |
| GTGAGTCTCACCACATGATT+TGG | + | chr1.4:66022217-66022236 | MS.gene69919:intron | 45.0% | |
| TAGTCTAGCCTGCTGTGTTA+GGG | + | chr1.4:66023582-66023601 | MS.gene69919:intron | 45.0% | |
| TATCTCCGGAAACATTCCCT+CGG | - | chr1.4:66023426-66023445 | None:intergenic | 45.0% | |
| TATCTGTCCGATACAGCAGA+TGG | - | chr1.4:66023837-66023856 | None:intergenic | 45.0% | |
| TCGCTATTGCCATAAGTGGT+AGG | + | chr1.4:66022467-66022486 | MS.gene69919:intron | 45.0% | |
| TCTCATTATACCAGCTGCAG+AGG | + | chr1.4:66022607-66022626 | MS.gene69919:intron | 45.0% | |
| TCTGCTGTATCGGACAGATA+TGG | + | chr1.4:66023837-66023856 | MS.gene69919:intron | 45.0% | |
| TGTACATTTCACAGCCAGCA+AGG | - | chr1.4:66024058-66024077 | None:intergenic | 45.0% | |
| TGTTTCCGGAGATAGCTGTT+GGG | + | chr1.4:66023432-66023451 | MS.gene69919:intron | 45.0% | |
| ! | AGTCAAAGACGGGTTTAGTG+TGG | + | chr1.4:66021612-66021631 | MS.gene69919:intron | 45.0% |
| ! | AGTCTCACCACATGATTTGG+TGG | + | chr1.4:66022220-66022239 | MS.gene69919:intron | 45.0% |
| ! | CTGACATTTCTCTGAGGGTT+GGG | + | chr1.4:66022866-66022885 | MS.gene69919:intron | 45.0% |
| ! | GGTGTTGTGATCACTCAATC+TGG | - | chr1.4:66021889-66021908 | None:intergenic | 45.0% |
| ! | TCTGACATTTCTCTGAGGGT+TGG | + | chr1.4:66022865-66022884 | MS.gene69919:intron | 45.0% |
| ! | TGAAGAGTTCATTGGTGGCA+TGG | - | chr1.4:66022030-66022049 | None:intergenic | 45.0% |
| !! | ACCGAGTCAAAATTGGCCTT+AGG | - | chr1.4:66021165-66021184 | None:intergenic | 45.0% |
| !! | ATTAGGCAGAACTCGGTGTA+AGG | - | chr1.4:66023745-66023764 | None:intergenic | 45.0% |
| !! | CCGAGTCAAAATTGGCCTTA+GGG | - | chr1.4:66021164-66021183 | None:intergenic | 45.0% |
| !! | CGAGTCAAAATTGGCCTTAG+GGG | - | chr1.4:66021163-66021182 | None:intergenic | 45.0% |
| !! | TCTGGTGATGGATACCCATA+TGG | + | chr1.4:66022686-66022705 | MS.gene69919:CDS | 45.0% |
| !!! | CCCTAAGGCCAATTTTGACT+CGG | + | chr1.4:66021161-66021180 | MS.gene69919:intron | 45.0% |
| !!! | GTTGGGTTTTCTTTGGAGCA+TGG | + | chr1.4:66023513-66023532 | MS.gene69919:intron | 45.0% |
| !!! | TATTATTTAACTATATTTTA+CGG | - | chr1.4:66021500-66021519 | None:intergenic | 5.0% |
| AAACACGTGGCACCTCACTT+AGG | - | chr1.4:66021205-66021224 | None:intergenic | 50.0% | |
| AAAGGGTCGATGATTGTGGG+AGG | + | chr1.4:66022541-66022560 | MS.gene69919:intron | 50.0% | |
| AACACGTGGCACCTCACTTA+GGG | - | chr1.4:66021204-66021223 | None:intergenic | 50.0% | |
| AAGGGTCGATGATTGTGGGA+GGG | + | chr1.4:66022542-66022561 | MS.gene69919:intron | 50.0% | |
| AGGCACACCAAAGAACGCAA+AGG | - | chr1.4:66023725-66023744 | None:intergenic | 50.0% | |
| ATCTCCGGAAACATTCCCTC+GGG | - | chr1.4:66023425-66023444 | None:intergenic | 50.0% | |
| CAGTTGCAAAACATAGGGGG+CGG | - | chr1.4:66021128-66021147 | None:intergenic | 50.0% | |
| CATGCTGCTGCAAGTGCAAA+CGG | + | chr1.4:66020551-66020570 | MS.gene69919:CDS | 50.0% | |
| CCTGCAGGCTTGTAAAAAGC+TGG | + | chr1.4:66024022-66024041 | MS.gene69919:intron | 50.0% | |
| CGCAGCATCATGTTCCATGA+TGG | - | chr1.4:66021671-66021690 | None:intergenic | 50.0% | |
| GCACCAAAGCACATTGGACA+AGG | - | chr1.4:66024092-66024111 | None:intergenic | 50.0% | |
| GGAAACCAAAGTGGCCAAAG+TGG | - | chr1.4:66023091-66023110 | None:intergenic | 50.0% | |
| GGAGCCGAAATCGCAACTTT+AGG | - | chr1.4:66021085-66021104 | None:intergenic | 50.0% | |
| GTAGTCTAGCCTGCTGTGTT+AGG | + | chr1.4:66023581-66023600 | MS.gene69919:intron | 50.0% | |
| GTTTCCGGAGATAGCTGTTG+GGG | + | chr1.4:66023433-66023452 | MS.gene69919:intron | 50.0% | |
| TGATCTTGCAGCTTCTCCTG+TGG | - | chr1.4:66024250-66024269 | None:intergenic | 50.0% | |
| TGGTGATATGGACGCCCATT+TGG | + | chr1.4:66020838-66020857 | MS.gene69919:intron | 50.0% | |
| ! | CCAGCTTTTTACAAGCCTGC+AGG | - | chr1.4:66024025-66024044 | None:intergenic | 50.0% |
| ! | CCCCCTATGTTTTGCAACTG+TGG | + | chr1.4:66021128-66021147 | MS.gene69919:intron | 50.0% |
| ! | TGAATGGTGTTGGAACCCGA+GGG | + | chr1.4:66023407-66023426 | MS.gene69919:intron | 50.0% |
| ! | TTGAATGGTGTTGGAACCCG+AGG | + | chr1.4:66023406-66023425 | MS.gene69919:intron | 50.0% |
| !! | AGTCACTCGTTCTCTAGGAC+AGG | - | chr1.4:66022371-66022390 | None:intergenic | 50.0% |
| !! | GTCACTCGTTCTCTAGGACA+GGG | - | chr1.4:66022370-66022389 | None:intergenic | 50.0% |
| !! | TCACTCGTTCTCTAGGACAG+GGG | - | chr1.4:66022369-66022388 | None:intergenic | 50.0% |
| ACCACATGCCCTAACACAGC+AGG | - | chr1.4:66023593-66023612 | None:intergenic | 55.0% | |
| CTGACGTGACACCCTAAGTG+AGG | + | chr1.4:66021190-66021209 | MS.gene69919:intron | 55.0% | |
| GGAACCCGAGGGAATGTTTC+CGG | + | chr1.4:66023418-66023437 | MS.gene69919:intron | 55.0% | |
| GTCGATGATTGTGGGAGGGA+GGG | + | chr1.4:66022546-66022565 | MS.gene69919:intron | 55.0% | |
| GTTAGGGCATGTGGTATGCC+AGG | + | chr1.4:66023598-66023617 | MS.gene69919:intron | 55.0% | |
| TGGTCTCTATCCTCTGCAGC+TGG | - | chr1.4:66022620-66022639 | None:intergenic | 55.0% | |
| ! | TCACGCCACTTTGGCCACTT+TGG | + | chr1.4:66023083-66023102 | MS.gene69919:intron | 55.0% |
| !! | TGTGGCAGTTTTGGCCCCTA+AGG | + | chr1.4:66021146-66021165 | MS.gene69919:intron | 55.0% |
| GCCTGCTGTGTTAGGGCATG+TGG | + | chr1.4:66023589-66023608 | MS.gene69919:intron | 60.0% | |
| GCGGCTACTCCTGCTGCTAA+TGG | + | chr1.4:66021688-66021707 | MS.gene69919:intron | 60.0% | |
| GGTCGATGATTGTGGGAGGG+AGG | + | chr1.4:66022545-66022564 | MS.gene69919:intron | 60.0% | |
| CGCGCCCCAACAGCTATCTC+CGG | - | chr1.4:66023440-66023459 | None:intergenic | 65.0% | |
| CGGAGATAGCTGTTGGGGCG+CGG | + | chr1.4:66023438-66023457 | MS.gene69919:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 66020545 | 66024416 | 66020545 | ID=MS.gene69919 |
| chr1.4 | mRNA | 66020545 | 66024416 | 66020545 | ID=MS.gene69919.t1;Parent=MS.gene69919 |
| chr1.4 | exon | 66020545 | 66020572 | 66020545 | ID=MS.gene69919.t1.exon1;Parent=MS.gene69919.t1 |
| chr1.4 | CDS | 66020545 | 66020572 | 66020545 | ID=cds.MS.gene69919.t1;Parent=MS.gene69919.t1 |
| chr1.4 | exon | 66022621 | 66022811 | 66022621 | ID=MS.gene69919.t1.exon2;Parent=MS.gene69919.t1 |
| chr1.4 | CDS | 66022621 | 66022811 | 66022621 | ID=cds.MS.gene69919.t1;Parent=MS.gene69919.t1 |
| chr1.4 | exon | 66024029 | 66024133 | 66024029 | ID=MS.gene69919.t1.exon3;Parent=MS.gene69919.t1 |
| chr1.4 | CDS | 66024029 | 66024133 | 66024029 | ID=cds.MS.gene69919.t1;Parent=MS.gene69919.t1 |
| chr1.4 | exon | 66024231 | 66024416 | 66024231 | ID=MS.gene69919.t1.exon4;Parent=MS.gene69919.t1 |
| chr1.4 | CDS | 66024231 | 66024416 | 66024231 | ID=cds.MS.gene69919.t1;Parent=MS.gene69919.t1 |
| Gene Sequence |
| Protein sequence |
