AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene70089


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene70089.t1 MTR_8g100040 96.806 407 12 1 1 407 1 406 0.0 778
MS.gene70089.t1 MTR_3g102830 92.647 408 28 2 1 407 1 407 0.0 713
MS.gene70089.t1 MTR_3g498725 85.258 407 55 3 1 407 1 402 0.0 644
MS.gene70089.t1 MTR_6g048860 89.873 158 12 1 232 389 112 265 1.08e-92 283
MS.gene70089.t1 MTR_3g461000 47.664 321 157 5 95 407 1 318 1.42e-84 275
MS.gene70089.t1 MTR_6g013660 40.356 337 163 9 89 407 71 387 1.52e-67 231
MS.gene70089.t1 MTR_7g012820 41.667 324 158 9 97 407 86 391 3.27e-67 230
MS.gene70089.t1 MTR_7g012820 41.667 324 158 9 97 407 15 320 4.89e-67 229
MS.gene70089.t1 MTR_3g106160 41.615 322 157 6 99 407 96 399 2.10e-66 228
MS.gene70089.t1 MTR_3g098310 36.752 351 184 6 95 407 100 450 1.26e-59 207
MS.gene70089.t1 MTR_3g098310 36.752 351 184 6 95 407 100 450 4.57e-59 207
MS.gene70089.t1 MTR_4g109450 38.679 318 177 8 97 407 4 310 3.35e-55 196
MS.gene70089.t1 MTR_7g028970 38.170 317 178 7 98 407 5 310 5.44e-55 195
MS.gene70089.t1 MTR_4g109450 38.679 318 177 8 97 407 4 310 6.01e-55 195
MS.gene70089.t1 MTR_1g076440 84.043 94 15 0 128 221 7 100 1.89e-44 157
MS.gene70089.t1 MTR_5g011550 29.134 127 87 2 98 221 85 211 2.09e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene70089.t1 AT5G50920 79.557 406 77 4 2 407 5 404 0.0 572
MS.gene70089.t1 AT3G48870 80.577 381 62 3 31 407 53 425 0.0 544
MS.gene70089.t1 AT3G48870 80.577 381 62 3 31 407 53 425 0.0 544
MS.gene70089.t1 AT3G48870 80.577 381 62 3 31 407 22 394 0.0 544
MS.gene70089.t1 AT3G48870 80.577 381 62 3 31 407 53 425 0.0 544
MS.gene70089.t1 AT3G45450 59.048 315 90 7 95 407 1 278 1.45e-100 303
MS.gene70089.t1 AT5G51070 41.329 346 171 7 94 407 78 423 3.42e-69 235
MS.gene70089.t1 AT5G15450 41.317 334 145 7 97 407 80 385 2.10e-66 228
MS.gene70089.t1 AT2G25140 40.483 331 167 7 90 407 77 390 7.24e-64 221
MS.gene70089.t1 AT1G74310 40.566 318 171 6 97 407 4 310 6.45e-61 211
MS.gene70089.t1 AT1G74310 40.566 318 171 6 97 407 4 310 1.19e-60 211
MS.gene70089.t1 AT4G14670 57.047 149 61 2 260 407 129 275 2.27e-48 174
MS.gene70089.t1 AT4G12060 30.597 134 90 2 91 221 86 219 3.07e-11 63.5

Find 125 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTTCCCTCTATGGTTTC+GGG 0.165534 4.1:+6587393 None:intergenic
CAGATTCTATTGGGTCTTAT+TGG 0.178181 4.1:-6588547 MS.gene70089:CDS
CGGATCTGAGCACTTGCTTT+TGG 0.186791 4.1:-6588008 MS.gene70089:CDS
GTCAAAATCACAGGGAAAAT+TGG 0.189560 4.1:-6587568 MS.gene70089:intron
AAAATAATCCTTGTCTTATT+GGG 0.195129 4.1:-6587482 MS.gene70089:CDS
CTCTGCTAGCTTGGTCAAAT+TGG 0.202101 4.1:+6587683 None:intergenic
ATTACGTACTTTGAATTCTT+TGG 0.223172 4.1:-6588767 MS.gene70089:CDS
CTTCTTTCCCTCTATGGTTT+CGG 0.225647 4.1:+6587392 None:intergenic
ACCAACCTTCTTTCCCTCTA+TGG 0.244485 4.1:+6587386 None:intergenic
AGCACGTGTTCTTGAAAATT+TGG 0.249537 4.1:-6587957 MS.gene70089:CDS
AGGAATCATGTCGAGGGTTT+TGG 0.273755 4.1:-6588929 None:intergenic
GATGAAGTGCACACTCTAAT+TGG 0.276610 4.1:-6587052 MS.gene70089:CDS
TCAGGAGGAGGCAAGGCGGC+TGG 0.337825 4.1:-6588593 MS.gene70089:CDS
TGGAACTGAACAGATTCTAT+TGG 0.339561 4.1:-6588557 MS.gene70089:CDS
GTCGAGGTAGAGAAGATAAT+TGG 0.347679 4.1:-6588460 MS.gene70089:CDS
GTAGGTTATAACCCTAGATA+TGG 0.368738 4.1:-6587176 MS.gene70089:intron
CTACAAGTAGACCCATATCT+AGG 0.370031 4.1:+6587164 None:intergenic
GTGAGGGTGCTGATAGTGTT+GGG 0.370689 4.1:-6587764 MS.gene70089:CDS
TGAACGTGTCACTCAAATCT+TGG 0.375274 4.1:-6587517 MS.gene70089:CDS
CTCTTGGCACGTGGGGTAAA+CGG 0.377703 4.1:+6588406 None:intergenic
TTTCCAGGTCACAATTATAT+CGG 0.383974 4.1:-6588028 MS.gene70089:intron
GGAACTGAACAGATTCTATT+GGG 0.395625 4.1:-6588556 MS.gene70089:CDS
CCTTGTCTTATTGGGGAACC+TGG 0.397535 4.1:-6587474 MS.gene70089:CDS
TCCCGAGTAACTAGACAGTC+TGG 0.401943 4.1:+6588789 None:intergenic
AAGATAATTGGAAGGGGAAG+TGG 0.413810 4.1:-6588448 MS.gene70089:CDS
GTTGGGGCTACCGTTGGCTC+TGG 0.423794 4.1:-6587747 MS.gene70089:CDS
GGTCTTATTGGTGAAGGAAC+TGG 0.424307 4.1:-6588535 MS.gene70089:CDS
ATGCCAACTTTGGAGGAGTA+TGG 0.429557 4.1:-6587708 MS.gene70089:CDS
GAGAGTCTTGGAACTCTCAT+TGG 0.431062 4.1:-6588386 MS.gene70089:CDS
GCCTGGGTGCGAATATTAGT+TGG 0.447285 4.1:+6587927 None:intergenic
CAGGAGGAGGCAAGGCGGCT+GGG 0.447536 4.1:-6588592 MS.gene70089:CDS
GGTGAGGGTGCTGATAGTGT+TGG 0.456497 4.1:-6587765 MS.gene70089:CDS
AGTTACCTCCTCTGCTAGCT+TGG 0.457680 4.1:+6587674 None:intergenic
TAACAATAAGATGCCAACTT+TGG 0.458624 4.1:-6587718 MS.gene70089:CDS
AGGAACTGGTATTGCGGCTA+AGG 0.466745 4.1:-6588521 MS.gene70089:CDS
TGTGGCTGCCTACCCACAAC+AGG 0.484594 4.1:+6587543 None:intergenic
GAACGTGTCACTCAAATCTT+GGG 0.488197 4.1:-6587516 MS.gene70089:CDS
ACCCAGACTGTCTAGTTACT+CGG 0.490173 4.1:-6588791 MS.gene70089:CDS
CAAAGTAATTATGTTGGCTC+AGG 0.492161 4.1:-6588611 MS.gene70089:CDS
CTTGCTCAACGGATTGCAAA+TGG 0.493862 4.1:-6587423 MS.gene70089:CDS
GCACCTTAGAATGAAAATCT+TGG 0.499615 4.1:+6588725 None:intergenic
TGAGTGACACGTTCAATTTG+TGG 0.499806 4.1:+6587525 None:intergenic
TCTAAGGTGCTCACTCAGAT+TGG 0.504328 4.1:-6588712 MS.gene70089:CDS
GGGAAAATTGGATCCTGTTG+TGG 0.505719 4.1:-6587556 MS.gene70089:CDS
GGAAAATTGGATCCTGTTGT+GGG 0.508304 4.1:-6587555 MS.gene70089:CDS
AATGTCCCTGGTCTAGTGGC+TGG 0.508918 4.1:-6588895 MS.gene70089:CDS
CAATAAGATGCCAACTTTGG+AGG 0.509184 4.1:-6587715 MS.gene70089:CDS
CTTCGACCAGCCACTAGACC+AGG 0.509991 4.1:+6588889 None:intergenic
TGAGAGTTCCAAGACTCTCT+TGG 0.510742 4.1:+6588390 None:intergenic
ATGATGACATAATACTTGCC+TGG 0.514719 4.1:+6587910 None:intergenic
AGTAATTATGTTGGCTCAGG+AGG 0.515651 4.1:-6588608 MS.gene70089:CDS
CTATTGGGTCTTATTGGTGA+AGG 0.521471 4.1:-6588541 MS.gene70089:CDS
GTGCCATACTCCTCCAAAGT+TGG 0.521933 4.1:+6587705 None:intergenic
TTGGAGGAAGCTCGTCAACT+TGG 0.522024 4.1:-6588367 MS.gene70089:intron
CTCTGTAAAACGCTCAAACA+TGG 0.524422 4.1:+6588642 None:intergenic
GATTGGTACTAATCGAGCTA+AGG 0.525728 4.1:-6588695 MS.gene70089:CDS
AATTATGTTGGCTCAGGAGG+AGG 0.526333 4.1:-6588605 MS.gene70089:CDS
GCGCAGTCGATTAATGTCCC+TGG 0.531046 4.1:-6588907 MS.gene70089:CDS
ATGGCTGTCTTTCCGACACC+AGG 0.532374 4.1:+6587456 None:intergenic
CTGGTCTAGTGGCTGGTCGA+AGG 0.533789 4.1:-6588888 MS.gene70089:CDS
AAATAATCCTTGTCTTATTG+GGG 0.534007 4.1:-6587481 MS.gene70089:CDS
TCTTGCTAGAGGTGAACTAC+AGG 0.537146 4.1:-6586978 None:intergenic
TCCAAGACTCTCTTGGCACG+TGG 0.537851 4.1:+6588397 None:intergenic
GGTAGAGAAGATAATTGGAA+GGG 0.540976 4.1:-6588455 MS.gene70089:CDS
GTTATTCGCATGGTTGGTGA+GGG 0.544259 4.1:-6587780 MS.gene70089:CDS
AGGTAGAGAAGATAATTGGA+AGG 0.545059 4.1:-6588456 MS.gene70089:CDS
GTAGAGAAGATAATTGGAAG+GGG 0.545295 4.1:-6588454 MS.gene70089:CDS
ATCTTTCTTCAAATTCTCCA+CGG 0.545588 4.1:+6587128 None:intergenic
GTGCACACTCTAATTGGAGC+AGG 0.551279 4.1:-6587046 MS.gene70089:CDS
TTAGAATGAAAATCTTGGCC+AGG 0.551842 4.1:+6588730 None:intergenic
AATCGAGCTAAGGGTGGTAG+AGG 0.552487 4.1:-6588685 MS.gene70089:CDS
CGAAACCATAGAGGGAAAGA+AGG 0.554723 4.1:-6587391 MS.gene70089:intron
GATAGTGTTGGGGCTACCGT+TGG 0.556248 4.1:-6587753 MS.gene70089:CDS
AGCTATCAAAGTAATTATGT+TGG 0.558080 4.1:-6588617 MS.gene70089:CDS
GGTTATTCGCATGGTTGGTG+AGG 0.559144 4.1:-6587781 MS.gene70089:CDS
AGTCTTGGAACTCTCATTGG+AGG 0.561170 4.1:-6588383 MS.gene70089:CDS
CCCACGTGCCAAGAGAGTCT+TGG 0.563576 4.1:-6588398 MS.gene70089:CDS
TTGCTGAAGGTCTTGCTCAA+CGG 0.563976 4.1:-6587434 MS.gene70089:CDS
CCCAGACTGTCTAGTTACTC+GGG 0.564773 4.1:-6588790 MS.gene70089:CDS
TACAAGTAGACCCATATCTA+GGG 0.567209 4.1:+6587165 None:intergenic
GATTAATGTCCCTGGTCTAG+TGG 0.568714 4.1:-6588899 MS.gene70089:CDS
ATTGGAGCAGGAGCAGCTGA+AGG 0.572423 4.1:-6587034 MS.gene70089:CDS
TTGGAGCAGGAGCAGCTGAA+GGG 0.573404 4.1:-6587033 MS.gene70089:CDS
GGTCTTCTTAGAGAGGGTGA+AGG 0.574148 4.1:-6587986 MS.gene70089:CDS
GAACAGGTTATTCGCATGGT+TGG 0.577586 4.1:-6587786 MS.gene70089:intron
AGCTGAAGGGGCAATTGATG+CGG 0.578062 4.1:-6587020 MS.gene70089:CDS
ATGGGAACAGGTTATTCGCA+TGG 0.580936 4.1:-6587790 MS.gene70089:intron
ATTGGTACTAATCGAGCTAA+GGG 0.582672 4.1:-6588694 MS.gene70089:CDS
AGTTCACCTCTAGCAAGAGC+TGG 0.583470 4.1:+6586983 None:intergenic
TGGAGCAGGAGCAGCTGAAG+GGG 0.584707 4.1:-6587032 MS.gene70089:CDS
TAGGTTATAACCCTAGATAT+GGG 0.587092 4.1:-6587175 MS.gene70089:CDS
TTGGATTCAATGTTTAGACC+TGG 0.588863 4.1:-6588748 MS.gene70089:CDS
CTTATTGGGGAACCTGGTGT+CGG 0.589543 4.1:-6587468 MS.gene70089:CDS
GATATGGGTCTACTTGTAGC+GGG 0.589741 4.1:-6587160 MS.gene70089:CDS
TGATGTCCCCGAAACCATAG+AGG 0.595369 4.1:-6587400 MS.gene70089:CDS
TGATGACATAATACTTGCCT+GGG 0.597243 4.1:+6587911 None:intergenic
GGAAAGACAGCCATTGCTGA+AGG 0.598239 4.1:-6587447 MS.gene70089:CDS
TCTTAGAGAGGGTGAAGGTG+TGG 0.599604 4.1:-6587981 MS.gene70089:CDS
TGAGGGTGCTGATAGTGTTG+GGG 0.601686 4.1:-6587763 MS.gene70089:CDS
TCTTTCCCTCTATGGTTTCG+GGG 0.604706 4.1:+6587394 None:intergenic
CAATTCAGGAATCATGTCGA+GGG 0.605004 4.1:-6588935 None:intergenic
CCCGAGTAACTAGACAGTCT+GGG 0.606554 4.1:+6588790 None:intergenic
TGTTGGCTCAGGAGGAGGCA+AGG 0.607258 4.1:-6588600 MS.gene70089:CDS
TTTGACCAAGCTAGCAGAGG+AGG 0.607369 4.1:-6587679 MS.gene70089:intron
CCTAAAAGATGCACGTGTCG+AGG 0.614327 4.1:-6588476 MS.gene70089:CDS
TGGTGAAGGAACTGGTATTG+CGG 0.615599 4.1:-6588527 MS.gene70089:CDS
GTTACTACTTCCAGAGCCAA+CGG 0.622846 4.1:+6587737 None:intergenic
CCAAGACTCTCTTGGCACGT+GGG 0.623311 4.1:+6588398 None:intergenic
TTGAAGCCAGCTCTTGCTAG+AGG 0.624182 4.1:-6586989 MS.gene70089:CDS
CAAGACTCTCTTGGCACGTG+GGG 0.624750 4.1:+6588399 None:intergenic
AATTGGATCCTGTTGTGGGT+AGG 0.625477 4.1:-6587551 MS.gene70089:CDS
TTGAGCAAGACCTTCAGCAA+TGG 0.626338 4.1:+6587437 None:intergenic
AAGGAGCAGCTAGATCAAGA+AGG 0.632838 4.1:-6588849 MS.gene70089:CDS
AGATATGGGTCTACTTGTAG+CGG 0.638102 4.1:-6587161 MS.gene70089:CDS
ACAATTCAGGAATCATGTCG+AGG 0.643511 4.1:-6588936 None:intergenic
TTCGACCAGCCACTAGACCA+GGG 0.645722 4.1:+6588890 None:intergenic
TCTGGGTGCAGCAGTTCGTG+TGG 0.646472 4.1:+6588807 None:intergenic
GATGTCCCCGAAACCATAGA+GGG 0.650692 4.1:-6587399 MS.gene70089:CDS
CCAGGTTCCCCAATAAGACA+AGG 0.651573 4.1:+6587474 None:intergenic
AGGCATGTCAATAACAACAA+AGG 0.662987 4.1:-6588868 MS.gene70089:CDS
TCCAACTAATATTCGCACCC+AGG 0.666203 4.1:-6587928 MS.gene70089:CDS
CAATTTGACCAAGCTAGCAG+AGG 0.667069 4.1:-6587682 MS.gene70089:CDS
GGTACTAATCGAGCTAAGGG+TGG 0.687277 4.1:-6588691 MS.gene70089:CDS
TGGCTCAGGAGGAGGCAAGG+CGG 0.734449 4.1:-6588597 MS.gene70089:CDS
GTAGCGGGAACTAAATACCG+TGG 0.739992 4.1:-6587145 MS.gene70089:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAATCAAAAACAATTTA+TGG + chr4.1:6588560-6588579 None:intergenic 10.0%
!! TAAAATCAAAAACAATTTAT+GGG + chr4.1:6588559-6588578 None:intergenic 10.0%
!!! AATTGTTTTTGATTTTATTC+AGG - chr4.1:6588562-6588581 MS.gene70089:CDS 15.0%
!!! ATTGTTTTTGATTTTATTCA+GGG - chr4.1:6588563-6588582 MS.gene70089:CDS 15.0%
!!! GTTCTTTTGTTTATTTTATT+TGG - chr4.1:6587778-6587797 MS.gene70089:CDS 15.0%
!! AAAAATAATCCTTGTCTTAT+TGG - chr4.1:6588418-6588437 MS.gene70089:CDS 20.0%
!! AAATAAACAAAAGAACAGAA+AGG + chr4.1:6587774-6587793 None:intergenic 20.0%
!! AGAAAGATTGAAAAAACTAA+TGG - chr4.1:6588788-6588807 MS.gene70089:CDS 20.0%
!!! AAAATAATCCTTGTCTTATT+GGG - chr4.1:6588419-6588438 MS.gene70089:CDS 20.0%
!!! AATAAGACAAGGATTATTTT+TGG + chr4.1:6588419-6588438 None:intergenic 20.0%
!!! TTGTTTTTGATTTTATTCAG+GGG - chr4.1:6588564-6588583 MS.gene70089:CDS 20.0%
! AAGATTGAAAAAACTAATGG+AGG - chr4.1:6588791-6588810 MS.gene70089:CDS 25.0%
! AGCTATCAAAGTAATTATGT+TGG - chr4.1:6587284-6587303 MS.gene70089:intron 25.0%
! ATTACGTACTTTGAATTCTT+TGG - chr4.1:6587134-6587153 MS.gene70089:CDS 25.0%
! CTGATTATAATTCTTAGATG+TGG - chr4.1:6588648-6588667 MS.gene70089:CDS 25.0%
! GTTGAAATTTATCCATGAAT+TGG - chr4.1:6587727-6587746 MS.gene70089:CDS 25.0%
!! AAATAATCCTTGTCTTATTG+GGG - chr4.1:6588420-6588439 MS.gene70089:CDS 25.0%
!!! ATGTGGAATTTTAGTACTTT+CGG - chr4.1:6588665-6588684 MS.gene70089:CDS 25.0%
!!! TGTTTTTGATTTTATTCAGG+GGG - chr4.1:6588565-6588584 MS.gene70089:CDS 25.0%
ACATCACGAAAGAGAAAAAT+TGG + chr4.1:6588315-6588334 None:intergenic 30.0%
AGCAAAAATCAAGTCATGTT+TGG + chr4.1:6587658-6587677 None:intergenic 30.0%
ATCTTTCTTCAAATTCTCCA+CGG + chr4.1:6588776-6588795 None:intergenic 30.0%
TAACAATAAGATGCCAACTT+TGG - chr4.1:6588183-6588202 MS.gene70089:intron 30.0%
TAGGTTATAACCCTAGATAT+GGG - chr4.1:6588726-6588745 MS.gene70089:CDS 30.0%
TTTCCAGGTCACAATTATAT+CGG - chr4.1:6587873-6587892 MS.gene70089:intron 30.0%
!! TGTGGAATTTTAGTACTTTC+GGG - chr4.1:6588666-6588685 MS.gene70089:CDS 30.0%
AAACAAAAGAACAGAAAGGC+CGG + chr4.1:6587770-6587789 None:intergenic 35.0%
AATCTTGTACTCCACTTGAT+GGG - chr4.1:6588093-6588112 MS.gene70089:intron 35.0%
ACATAAATCACGCCAATTCA+TGG + chr4.1:6587742-6587761 None:intergenic 35.0%
AGCACGTGTTCTTGAAAATT+TGG - chr4.1:6587944-6587963 MS.gene70089:CDS 35.0%
AGGCATGTCAATAACAACAA+AGG - chr4.1:6587033-6587052 MS.gene70089:CDS 35.0%
AGGTAGAGAAGATAATTGGA+AGG - chr4.1:6587445-6587464 MS.gene70089:CDS 35.0%
ATGATGACATAATACTTGCC+TGG + chr4.1:6587994-6588013 None:intergenic 35.0%
ATTGGTACTAATCGAGCTAA+GGG - chr4.1:6587207-6587226 MS.gene70089:intron 35.0%
CATCTGTCATGAAGAAAACT+AGG + chr4.1:6588260-6588279 None:intergenic 35.0%
CCTGGAAATTGCAAAATGTA+AGG + chr4.1:6587861-6587880 None:intergenic 35.0%
GAGCAAGTTAAACATGTTCA+AGG + chr4.1:6588619-6588638 None:intergenic 35.0%
GCACCTTAGAATGAAAATCT+TGG + chr4.1:6587179-6587198 None:intergenic 35.0%
GGAACTGAACAGATTCTATT+GGG - chr4.1:6587345-6587364 MS.gene70089:intron 35.0%
GGTAGAGAAGATAATTGGAA+GGG - chr4.1:6587446-6587465 MS.gene70089:CDS 35.0%
GTAGAGAAGATAATTGGAAG+GGG - chr4.1:6587447-6587466 MS.gene70089:CDS 35.0%
GTAGGTTATAACCCTAGATA+TGG - chr4.1:6588725-6588744 MS.gene70089:CDS 35.0%
GTCAAAATCACAGGGAAAAT+TGG - chr4.1:6588333-6588352 MS.gene70089:intron 35.0%
TAATCTTGTACTCCACTTGA+TGG - chr4.1:6588092-6588111 MS.gene70089:intron 35.0%
TACAAGTAGACCCATATCTA+GGG + chr4.1:6588739-6588758 None:intergenic 35.0%
TGATGACATAATACTTGCCT+GGG + chr4.1:6587993-6588012 None:intergenic 35.0%
TGGAACTGAACAGATTCTAT+TGG - chr4.1:6587344-6587363 MS.gene70089:intron 35.0%
TTAGAATGAAAATCTTGGCC+AGG + chr4.1:6587174-6587193 None:intergenic 35.0%
TTCGTGATGTCAAAATCACA+GGG - chr4.1:6588325-6588344 MS.gene70089:intron 35.0%
TTGGATTCAATGTTTAGACC+TGG - chr4.1:6587153-6587172 MS.gene70089:CDS 35.0%
TTTCGTGATGTCAAAATCAC+AGG - chr4.1:6588324-6588343 MS.gene70089:intron 35.0%
! CAGATTCTATTGGGTCTTAT+TGG - chr4.1:6587354-6587373 MS.gene70089:intron 35.0%
! CCTTACATTTTGCAATTTCC+AGG - chr4.1:6587858-6587877 MS.gene70089:intron 35.0%
! TGATTTTATTCAGGGGGTAA+GGG - chr4.1:6588571-6588590 MS.gene70089:CDS 35.0%
! TGGCCAAGATTTTCATTCTA+AGG - chr4.1:6587173-6587192 MS.gene70089:CDS 35.0%
! TTGATTTTATTCAGGGGGTA+AGG - chr4.1:6588570-6588589 MS.gene70089:CDS 35.0%
!! CAAAGTAATTATGTTGGCTC+AGG - chr4.1:6587290-6587309 MS.gene70089:intron 35.0%
!! CTAGTTTTCTTCATGACAGA+TGG - chr4.1:6588258-6588277 MS.gene70089:intron 35.0%
!! TTTTGCTTTGAGTGATCTGT+CGG - chr4.1:6587671-6587690 MS.gene70089:intron 35.0%
!!! ATCTTTTAGGTTAATCCCCA+TGG + chr4.1:6587415-6587434 None:intergenic 35.0%
AACCTACATCATGCAGAACA+AGG + chr4.1:6588712-6588731 None:intergenic 40.0%
AAGATAATTGGAAGGGGAAG+TGG - chr4.1:6587453-6587472 MS.gene70089:CDS 40.0%
AATAACCTGTTCCCATCAAG+TGG + chr4.1:6588107-6588126 None:intergenic 40.0%
AGATATGGGTCTACTTGTAG+CGG - chr4.1:6588740-6588759 MS.gene70089:CDS 40.0%
CAATAAGATGCCAACTTTGG+AGG - chr4.1:6588186-6588205 MS.gene70089:intron 40.0%
CTACAAGTAGACCCATATCT+AGG + chr4.1:6588740-6588759 None:intergenic 40.0%
CTCTGTAAAACGCTCAAACA+TGG + chr4.1:6587262-6587281 None:intergenic 40.0%
CTTCTTTCCCTCTATGGTTT+CGG + chr4.1:6588512-6588531 None:intergenic 40.0%
GATCCGATATAATTGTGACC+TGG + chr4.1:6587879-6587898 None:intergenic 40.0%
GATGAAGTGCACACTCTAAT+TGG - chr4.1:6588849-6588868 MS.gene70089:CDS 40.0%
GATTGGTACTAATCGAGCTA+AGG - chr4.1:6587206-6587225 MS.gene70089:intron 40.0%
GGAAAATTGGATCCTGTTGT+GGG - chr4.1:6588346-6588365 MS.gene70089:intron 40.0%
GTCGAGGTAGAGAAGATAAT+TGG - chr4.1:6587441-6587460 MS.gene70089:CDS 40.0%
TGAGTGACACGTTCAATTTG+TGG + chr4.1:6588379-6588398 None:intergenic 40.0%
TTCTTTCCCTCTATGGTTTC+GGG + chr4.1:6588511-6588530 None:intergenic 40.0%
! GAACGTGTCACTCAAATCTT+GGG - chr4.1:6588385-6588404 MS.gene70089:CDS 40.0%
! GATTTTATTCAGGGGGTAAG+GGG - chr4.1:6588572-6588591 MS.gene70089:CDS 40.0%
! GGCGTGATTTATGTTTTGTC+CGG - chr4.1:6587748-6587767 MS.gene70089:CDS 40.0%
! TGAACGTGTCACTCAAATCT+TGG - chr4.1:6588384-6588403 MS.gene70089:CDS 40.0%
!! AGTAATTATGTTGGCTCAGG+AGG - chr4.1:6587293-6587312 MS.gene70089:intron 40.0%
!! CTATTGGGTCTTATTGGTGA+AGG - chr4.1:6587360-6587379 MS.gene70089:intron 40.0%
!! CTTTTGGGTCTTCTTAGAGA+GGG - chr4.1:6587909-6587928 MS.gene70089:intron 40.0%
!!! CTAAGGTTTTGAAGTCCATG+GGG - chr4.1:6587397-6587416 MS.gene70089:CDS 40.0%
!!! GCTAAGGTTTTGAAGTCCAT+GGG - chr4.1:6587396-6587415 MS.gene70089:CDS 40.0%
AAGGAGCAGCTAGATCAAGA+AGG - chr4.1:6587052-6587071 MS.gene70089:CDS 45.0%
AATTGGATCCTGTTGTGGGT+AGG - chr4.1:6588350-6588369 MS.gene70089:intron 45.0%
ACAAGGCTTTCACGTCATTC+AGG + chr4.1:6588695-6588714 None:intergenic 45.0%
ACCAACCTTCTTTCCCTCTA+TGG + chr4.1:6588518-6588537 None:intergenic 45.0%
ACCATAGAGGGAAAGAAGGT+TGG - chr4.1:6588514-6588533 MS.gene70089:CDS 45.0%
ACCCAGACTGTCTAGTTACT+CGG - chr4.1:6587110-6587129 MS.gene70089:CDS 45.0%
AGTCTTGGAACTCTCATTGG+AGG - chr4.1:6587518-6587537 MS.gene70089:CDS 45.0%
ATGGGAACAGGTTATTCGCA+TGG - chr4.1:6588111-6588130 MS.gene70089:intron 45.0%
CAATTTGACCAAGCTAGCAG+AGG - chr4.1:6588219-6588238 MS.gene70089:intron 45.0%
CGAAACCATAGAGGGAAAGA+AGG - chr4.1:6588510-6588529 MS.gene70089:CDS 45.0%
GAACAGGTTATTCGCATGGT+TGG - chr4.1:6588115-6588134 MS.gene70089:intron 45.0%
GAGAGTCTTGGAACTCTCAT+TGG - chr4.1:6587515-6587534 MS.gene70089:CDS 45.0%
GATATGGGTCTACTTGTAGC+GGG - chr4.1:6588741-6588760 MS.gene70089:CDS 45.0%
GATTAATGTCCCTGGTCTAG+TGG - chr4.1:6587002-6587021 MS.gene70089:CDS 45.0%
GGGAAAATTGGATCCTGTTG+TGG - chr4.1:6588345-6588364 MS.gene70089:intron 45.0%
GTTACTACTTCCAGAGCCAA+CGG + chr4.1:6588167-6588186 None:intergenic 45.0%
TCCAACTAATATTCGCACCC+AGG - chr4.1:6587973-6587992 MS.gene70089:CDS 45.0%
TCTTTCCCTCTATGGTTTCG+GGG + chr4.1:6588510-6588529 None:intergenic 45.0%
TGAGAGTTCCAAGACTCTCT+TGG + chr4.1:6587514-6587533 None:intergenic 45.0%
TGGTGAAGGAACTGGTATTG+CGG - chr4.1:6587374-6587393 MS.gene70089:intron 45.0%
TTGAGCAAGACCTTCAGCAA+TGG + chr4.1:6588467-6588486 None:intergenic 45.0%
TTGCTGAAGGTCTTGCTCAA+CGG - chr4.1:6588467-6588486 MS.gene70089:CDS 45.0%
! ATGCCAACTTTGGAGGAGTA+TGG - chr4.1:6588193-6588212 MS.gene70089:intron 45.0%
! CTCTGCTAGCTTGGTCAAAT+TGG + chr4.1:6588221-6588240 None:intergenic 45.0%
! TCTAAGGTGCTCACTCAGAT+TGG - chr4.1:6587189-6587208 MS.gene70089:intron 45.0%
!! AATTATGTTGGCTCAGGAGG+AGG - chr4.1:6587296-6587315 MS.gene70089:intron 45.0%
!! AGCCTTGTTCTGCATGATGT+AGG - chr4.1:6588707-6588726 MS.gene70089:CDS 45.0%
!! CTTGCTCAACGGATTGCAAA+TGG - chr4.1:6588478-6588497 MS.gene70089:CDS 45.0%
!! GCTTTTGGGTCTTCTTAGAG+AGG - chr4.1:6587908-6587927 MS.gene70089:intron 45.0%
!! GGATCTGAGCACTTGCTTTT+GGG - chr4.1:6587894-6587913 MS.gene70089:intron 45.0%
!! GGTCTTATTGGTGAAGGAAC+TGG - chr4.1:6587366-6587385 MS.gene70089:intron 45.0%
!! GTTATTCGCATGGTTGGTGA+GGG - chr4.1:6588121-6588140 MS.gene70089:intron 45.0%
!!! GGCTAAGGTTTTGAAGTCCA+TGG - chr4.1:6587395-6587414 MS.gene70089:CDS 45.0%
!! ATATAATAAAAATACATAAA+AGG + chr4.1:6588022-6588041 None:intergenic 5.0%
AATCGAGCTAAGGGTGGTAG+AGG - chr4.1:6587216-6587235 MS.gene70089:intron 50.0%
AGCTGAAGGGGCAATTGATG+CGG - chr4.1:6588881-6588900 MS.gene70089:CDS 50.0%
AGGAACTGGTATTGCGGCTA+AGG - chr4.1:6587380-6587399 MS.gene70089:intron 50.0%
AGTTACCTCCTCTGCTAGCT+TGG + chr4.1:6588230-6588249 None:intergenic 50.0%
AGTTCACCTCTAGCAAGAGC+TGG + chr4.1:6588921-6588940 None:intergenic 50.0%
CCAGGTTCCCCAATAAGACA+AGG + chr4.1:6588430-6588449 None:intergenic 50.0%
CCCAGACTGTCTAGTTACTC+GGG - chr4.1:6587111-6587130 MS.gene70089:CDS 50.0%
CCCGAGTAACTAGACAGTCT+GGG + chr4.1:6587114-6587133 None:intergenic 50.0%
CCTAAAAGATGCACGTGTCG+AGG - chr4.1:6587425-6587444 MS.gene70089:CDS 50.0%
CTTATTGGGGAACCTGGTGT+CGG - chr4.1:6588433-6588452 MS.gene70089:CDS 50.0%
GATGTCCCCGAAACCATAGA+GGG - chr4.1:6588502-6588521 MS.gene70089:CDS 50.0%
GCCTGGGTGCGAATATTAGT+TGG + chr4.1:6587977-6587996 None:intergenic 50.0%
GGAAAGACAGCCATTGCTGA+AGG - chr4.1:6588454-6588473 MS.gene70089:CDS 50.0%
GGTACTAATCGAGCTAAGGG+TGG - chr4.1:6587210-6587229 MS.gene70089:intron 50.0%
GGTCTTCTTAGAGAGGGTGA+AGG - chr4.1:6587915-6587934 MS.gene70089:intron 50.0%
GTACTCCACTTGATGGGAAC+AGG - chr4.1:6588099-6588118 MS.gene70089:intron 50.0%
GTGCACACTCTAATTGGAGC+AGG - chr4.1:6588855-6588874 MS.gene70089:CDS 50.0%
GTGCCATACTCCTCCAAAGT+TGG + chr4.1:6588199-6588218 None:intergenic 50.0%
TCCCGAGTAACTAGACAGTC+TGG + chr4.1:6587115-6587134 None:intergenic 50.0%
TCTTAGAGAGGGTGAAGGTG+TGG - chr4.1:6587920-6587939 MS.gene70089:intron 50.0%
TGATGTCCCCGAAACCATAG+AGG - chr4.1:6588501-6588520 MS.gene70089:CDS 50.0%
TTGAAGCCAGCTCTTGCTAG+AGG - chr4.1:6588912-6588931 MS.gene70089:CDS 50.0%
TTGGAGGAAGCTCGTCAACT+TGG - chr4.1:6587534-6587553 MS.gene70089:CDS 50.0%
TTTGACCAAGCTAGCAGAGG+AGG - chr4.1:6588222-6588241 MS.gene70089:intron 50.0%
! CCTCGACACGTGCATCTTTT+AGG + chr4.1:6587428-6587447 None:intergenic 50.0%
! CCTTGTCTTATTGGGGAACC+TGG - chr4.1:6588427-6588446 MS.gene70089:CDS 50.0%
! CGGATCTGAGCACTTGCTTT+TGG - chr4.1:6587893-6587912 MS.gene70089:intron 50.0%
! CGGCTGGGACACAATTTTGT+TGG - chr4.1:6587324-6587343 MS.gene70089:intron 50.0%
! GGTTATTCGCATGGTTGGTG+AGG - chr4.1:6588120-6588139 MS.gene70089:intron 50.0%
! GTAGCGGGAACTAAATACCG+TGG - chr4.1:6588756-6588775 MS.gene70089:CDS 50.0%
!! GTGAGGGTGCTGATAGTGTT+GGG - chr4.1:6588137-6588156 MS.gene70089:intron 50.0%
!! TGAGGGTGCTGATAGTGTTG+GGG - chr4.1:6588138-6588157 MS.gene70089:intron 50.0%
AATGTCCCTGGTCTAGTGGC+TGG - chr4.1:6587006-6587025 MS.gene70089:CDS 55.0%
ATGGCTGTCTTTCCGACACC+AGG + chr4.1:6588448-6588467 None:intergenic 55.0%
ATTGGAGCAGGAGCAGCTGA+AGG - chr4.1:6588867-6588886 MS.gene70089:CDS 55.0%
CAAGACTCTCTTGGCACGTG+GGG + chr4.1:6587505-6587524 None:intergenic 55.0%
CCAAGACTCTCTTGGCACGT+GGG + chr4.1:6587506-6587525 None:intergenic 55.0%
CTCTTGGCACGTGGGGTAAA+CGG + chr4.1:6587498-6587517 None:intergenic 55.0%
GCGCAGTCGATTAATGTCCC+TGG - chr4.1:6586994-6587013 MS.gene70089:CDS 55.0%
TCCAAGACTCTCTTGGCACG+TGG + chr4.1:6587507-6587526 None:intergenic 55.0%
TTCGACCAGCCACTAGACCA+GGG + chr4.1:6587014-6587033 None:intergenic 55.0%
TTGGAGCAGGAGCAGCTGAA+GGG - chr4.1:6588868-6588887 MS.gene70089:CDS 55.0%
! GATAGTGTTGGGGCTACCGT+TGG - chr4.1:6588148-6588167 MS.gene70089:intron 55.0%
!! GGTGAGGGTGCTGATAGTGT+TGG - chr4.1:6588136-6588155 MS.gene70089:intron 55.0%
CCCACGTGCCAAGAGAGTCT+TGG - chr4.1:6587503-6587522 MS.gene70089:CDS 60.0%
CTTCGACCAGCCACTAGACC+AGG + chr4.1:6587015-6587034 None:intergenic 60.0%
TCTGGGTGCAGCAGTTCGTG+TGG + chr4.1:6587097-6587116 None:intergenic 60.0%
TGGAGCAGGAGCAGCTGAAG+GGG - chr4.1:6588869-6588888 MS.gene70089:CDS 60.0%
TGTGGCTGCCTACCCACAAC+AGG + chr4.1:6588361-6588380 None:intergenic 60.0%
! CTGGTCTAGTGGCTGGTCGA+AGG - chr4.1:6587013-6587032 MS.gene70089:CDS 60.0%
!! TGTTGGCTCAGGAGGAGGCA+AGG - chr4.1:6587301-6587320 MS.gene70089:intron 60.0%
TGGCTCAGGAGGAGGCAAGG+CGG - chr4.1:6587304-6587323 MS.gene70089:intron 65.0%
!! GTTGGGGCTACCGTTGGCTC+TGG - chr4.1:6588154-6588173 MS.gene70089:intron 65.0%
CAGGAGGAGGCAAGGCGGCT+GGG - chr4.1:6587309-6587328 MS.gene70089:intron 70.0%
TCAGGAGGAGGCAAGGCGGC+TGG - chr4.1:6587308-6587327 MS.gene70089:intron 70.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 6586979 6588944 6586979 ID=MS.gene70089
chr4.1 mRNA 6586979 6588944 6586979 ID=MS.gene70089.t1;Parent=MS.gene70089
chr4.1 exon 6588368 6588944 6588368 ID=MS.gene70089.t1.exon1;Parent=MS.gene70089.t1
chr4.1 CDS 6588368 6588944 6588368 ID=cds.MS.gene70089.t1;Parent=MS.gene70089.t1
chr4.1 exon 6587925 6588043 6587925 ID=MS.gene70089.t1.exon2;Parent=MS.gene70089.t1
chr4.1 CDS 6587925 6588043 6587925 ID=cds.MS.gene70089.t1;Parent=MS.gene70089.t1
chr4.1 exon 6587680 6587802 6587680 ID=MS.gene70089.t1.exon3;Parent=MS.gene70089.t1
chr4.1 CDS 6587680 6587802 6587680 ID=cds.MS.gene70089.t1;Parent=MS.gene70089.t1
chr4.1 exon 6587392 6587577 6587392 ID=MS.gene70089.t1.exon4;Parent=MS.gene70089.t1
chr4.1 CDS 6587392 6587577 6587392 ID=cds.MS.gene70089.t1;Parent=MS.gene70089.t1
chr4.1 exon 6586979 6587194 6586979 ID=MS.gene70089.t1.exon5;Parent=MS.gene70089.t1
chr4.1 CDS 6586979 6587194 6586979 ID=cds.MS.gene70089.t1;Parent=MS.gene70089.t1
Gene Sequence

>MS.gene70089

ATGTCGAGGGTTTTGGCGCAGTCGATTAATGTCCCTGGTCTAGTGGCTGGTCGAAGGCATGTCAATAACAACAAAGGAGCAGCTAGATCAAGAAGGTCTGTCAGAATGATGTTTACCACACGAACTGCTGCACCCAGACTGTCTAGTTACTCGGGATTACGTACTTTGAATTCTTTGGATTCAATGTTTAGACCTGGCCAAGATTTTCATTCTAAGGTGCTCACTCAGATTGGTACTAATCGAGCTAAGGGTGGTAGAGGTAGCAGATGCGTTACTAAAGCCATGTTTGAGCGTTTTACAGAGAAAGCTATCAAAGTAATTATGTTGGCTCAGGAGGAGGCAAGGCGGCTGGGACACAATTTTGTTGGAACTGAACAGATTCTATTGGGTCTTATTGGTGAAGGAACTGGTATTGCGGCTAAGGTTTTGAAGTCCATGGGGATTAACCTAAAAGATGCACGTGTCGAGGTAGAGAAGATAATTGGAAGGGGAAGTGGTTTTGTCGCTGTTGAGATTCCGTTTACCCCACGTGCCAAGAGAGTCTTGGAACTCTCATTGGAGGAAGCTCGTCAACTTGGTAAACGATAGCATACTTTTATAATGTCGTTTTGCATATCTAATCAATTACTTTGTTTACAAAAAATGTGTTCACGACTTATTATTTGTATGATATATTCCAAACATGACTTGATTTTTGCTTTGAGTGATCTGTCGGTTGACTAATTTGAATTATTTTCATTCAAAGTGAGTTGAAATTTATCCATGAATTGGCGTGATTTATGTTTTGTCCGGCCTTTCTGTTCTTTTGTTTATTTTATTTGGAGTGTTTAAAAATTAGTATTCACGTGCAATACTTTGCTTGTGCTTGCTGAAAGTTTGCCTTACATTTTGCAATTTCCAGGTCACAATTATATCGGATCTGAGCACTTGCTTTTGGGTCTTCTTAGAGAGGGTGAAGGTGTGGCAGCACGTGTTCTTGAAAATTTGGTGCTGATCCAACTAATATTCGCACCCAGGCAAGTATTATGTCATCATTTATTCCTTTTATGTATTTTTATTATATAAGAACATGTTTTCATTTCACTTTTTATCTGAATTTATGTTTTTGTGTGTTAATCTTGTACTCCACTTGATGGGAACAGGTTATTCGCATGGTTGGTGAGGGTGCTGATAGTGTTGGGGCTACCGTTGGCTCTGGAAGTAGTAACAATAAGATGCCAACTTTGGAGGAGTATGGCACCAATTTGACCAAGCTAGCAGAGGAGGTAACTTACAATTCCTAGTTTTCTTCATGACAGATGGTAGATAATGTCTCAGTCTGTGTTGATGCTTACCAATTTTTCTCTTTCGTGATGTCAAAATCACAGGGAAAATTGGATCCTGTTGTGGGTAGGCAGCCACAAATTGAACGTGTCACTCAAATCTTGGGTCGTCGTACCAAAAATAATCCTTGTCTTATTGGGGAACCTGGTGTCGGAAAGACAGCCATTGCTGAAGGTCTTGCTCAACGGATTGCAAATGGTGATGTCCCCGAAACCATAGAGGGAAAGAAGGTTGGTGTTTGTTTCTATCTCTAGCCCATAAATTGTTTTTGATTTTATTCAGGGGGTAAGGGGTTTGCTCTTTCATTTTCAGCACCTTGAACATGTTTAACTTGCTCAATCTTGATCTGATTATAATTCTTAGATGTGGAATTTTAGTACTTTCGGGTGTCCTGAATGACGTGAAAGCCTTGTTCTGCATGATGTAGGTTATAACCCTAGATATGGGTCTACTTGTAGCGGGAACTAAATACCGTGGAGAATTTGAAGAAAGATTGAAAAAACTAATGGAGGAAATCAAACAAAGTGATGAAATAATACTTTTCATTGATGAAGTGCACACTCTAATTGGAGCAGGAGCAGCTGAAGGGGCAATTGATGCGGCAAACATATTGAAGCCAGCTCTTGCTAGAGGTGAACTACAG

Protein sequence

>MS.gene70089.t1

MSRVLAQSINVPGLVAGRRHVNNNKGAARSRRSVRMMFTTRTAAPRLSSYSGLRTLNSLDSMFRPGQDFHSKVLTQIGTNRAKGGRGSRCVTKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLVLIQLIFAPRQVIRMVGEGADSVGATVGSGSSNNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQ